Last updated on 2026-06-19 11:53:49 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2025.7-1 | 1.75 | 38.65 | 40.40 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2025.7-1 | 1.40 | 28.31 | 29.71 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2025.7-1 | 62.84 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2025.7-1 | 205.41 | ERROR | |||
| r-devel-windows-x86_64 | 2025.7-1 | 4.00 | 61.00 | 65.00 | OK | |
| r-patched-linux-x86_64 | 2025.7-1 | 2.06 | 36.20 | 38.26 | OK | |
| r-release-linux-x86_64 | 2025.7-1 | 1.96 | 36.15 | 38.11 | OK | |
| r-release-macos-arm64 | 2025.7-1 | 1.00 | 41.00 | 42.00 | OK | |
| r-release-macos-x86_64 | 2025.7-1 | 2.00 | 187.00 | 189.00 | OK | |
| r-release-windows-x86_64 | 2025.7-1 | 4.00 | 64.00 | 68.00 | OK | |
| r-oldrel-macos-arm64 | 2025.7-1 | OK | ||||
| r-oldrel-macos-x86_64 | 2025.7-1 | 2.00 | 195.00 | 197.00 | OK | |
| r-oldrel-windows-x86_64 | 2025.7-1 | 5.00 | 68.00 | 73.00 | OK |
Version: 2025.7-1
Check: tests
Result: ERROR
Running ‘rotations.R’ [1s/1s]
Running the tests in ‘tests/rotations.R’ failed.
Complete output:
> # Tests here only compare against values computed with GPArotation code,
> # to ensure the regular and DF versions give the same result
>
>
> Sys.getenv("R_LIBS")
[1] "/tmp/Rtmp1hCgG2/RLIBS_c26894e97ef63"
> library()
Packages in library '/tmp/Rtmp1hCgG2/RLIBS_c26894e97ef63':
GPArotateDF Derivative Free Gradient Projection Factor
Rotation
GPArotation Gradient Projection Factor Rotation
Packages in library '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/library':
KernSmooth Functions for Kernel Smoothing Supporting Wand
& Jones (1995)
MASS Support Functions and Datasets for Venables and
Ripley's MASS
Matrix Sparse and Dense Matrix Classes and Methods
base The R Base Package
boot Bootstrap Functions
class Functions for Classification
cluster "Finding Groups in Data": Cluster Analysis
Extended Rousseeuw et al.
codetools Code Analysis Tools for R
compiler The R Compiler Package
datasets The R Datasets Package
foreign Read Data Stored by 'Minitab', 'S', 'SAS',
'SPSS', 'Stata', 'Systat', 'Weka', 'dBase', ...
grDevices The R Graphics Devices and Support for Colours
and Fonts
graphics The R Graphics Package
grid The Grid Graphics Package
lattice Trellis Graphics for R
methods Formal Methods and Classes
mgcv Mixed GAM Computation Vehicle with Automatic
Smoothness Estimation
nlme Linear and Nonlinear Mixed Effects Models
nnet Feed-Forward Neural Networks and Multinomial
Log-Linear Models
parallel Support for Parallel Computation in R
rpart Recursive Partitioning and Regression Trees
spatial Functions for Kriging and Point Pattern
Analysis
splines Regression Spline Functions and Classes
stats The R Stats Package
stats4 Statistical Functions using S4 Classes
survival Survival Analysis
tcltk Tcl/Tk Interface
tools Tools for Package Development
utils The R Utils Package
> require("GPArotation")
Loading required package: GPArotation
> require("GPArotateDF")
Loading required package: GPArotateDF
> search()
[1] ".GlobalEnv" "package:GPArotateDF" "package:GPArotation"
[4] "package:stats" "package:graphics" "package:grDevices"
[7] "package:utils" "package:datasets" "package:methods"
[10] "Autoloads" "package:base"
> Sys.info()
sysname
"Linux"
release
"7.0.10+deb14-amd64"
version
"#1 SMP PREEMPT_DYNAMIC Debian 7.0.10-1 (2026-05-27)"
nodename
"gimli1"
machine
"x86_64"
login
"hornik"
user
"hornik"
effective_user
"hornik"
>
> require("stats")
>
> fuzz <- 1e-6
> all.ok <- TRUE
>
>
> data(ability.cov)
> L <- loadings(factanal(factors = 2, covmat=ability.cov))
>
> # quartimax
>
> LG <- quartimax(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = FALSE, eps=1e-5, method = "quartimax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 2.071172e-10 2.57213e-10
> LG <- quartimax(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = TRUE, eps=1e-5, method = "quartimax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 3.594091e-11 3.001116e-11
>
>
>
> # quartimin
>
> LG <- quartimin(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "quartimin")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 2.399083e-11 2.122768e-12
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Factor1 Factor2
Factor1 0.00000000000000000e+00 -2.40939117168714745e-06
Factor2 -2.40939117168714745e-06 0.00000000000000000e+00
>
> LG <- quartimin(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-5, method = "quartimin")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 1.159026e-12 1.261096e-11
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Factor1 Factor2
Factor1 0.00000000000000000e+00 -1.61240317597677318e-06
Factor2 -1.61240317597677318e-06 0.00000000000000000e+00
>
> # oblimax commented out as it is gives problem quite consistently
>
> #LG <- oblimax(L, normalize = FALSE, eps=1e-5)
> #LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "oblimax")
> # Oblimax fails for fuzz = 1e-6. But succeeds for 0.01
> # if( 0.01 < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
> # cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
> # cat("difference:\n")
> # print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
> # all.ok <- FALSE
> # }
> # if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
> # cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
> # cat("difference:\n")
> # print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
> # all.ok <- FALSE
> # }
>
> #LG <- oblimax(L, normalize = TRUE, eps=1e-5)
> #LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-5, method = "oblimax")
> # if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
> # cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
> # cat("difference:\n")
> # print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
> # all.ok <- FALSE
> # }
> # if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
> # cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
> # cat("difference:\n")
> # print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
> # all.ok <- FALSE
> # }
>
>
> # entropy
>
> LG <- entropy(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = FALSE, eps=1e-5, method = "entropy")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 2.380919e-10 2.879861e-10
> LG <- entropy(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = TRUE, eps=1e-5, method = "entropy")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 2.954305e-12 2.090064e-12
>
>
>
> # simplimax
>
> LG <- simplimax(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "simplimax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
>
> LG <- simplimax(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-5, method = "simplimax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
>
>
> # bentlerQ
>
> LG <- bentlerQ(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "bentler")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 5.007946e-09 1.588765e-10
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Factor1 Factor2
Factor1 0.00000000000000000e+00 -3.94838404905728524e-05
Factor2 -3.94838404905728524e-05 -3.33066907387546962e-16
>
> LG <- bentlerQ(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-5, method = "bentler")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 7.240893e-09 6.148903e-08
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Factor1 Factor2
Factor1 -2.22044604925031308e-16 -1.01274249892813195e-04
Factor2 -1.01274249892813195e-04 4.44089209850062616e-16
>
>
> # bentlerT
>
> LG <- bentlerT(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = FALSE, eps=1e-5, method = "bentler")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 1.091502e-10 1.295173e-10
> LG <- bentlerT(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = TRUE, eps=1e-5, method = "bentler")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 2.900089e-09 2.613755e-09
>
>
> # geominQ
>
> LG <- geominQ(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "geomin")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
>
> LG <- geominQ(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-5, method = "geomin")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
>
>
> # geominT
>
> LG <- geominT(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = FALSE, eps=1e-5, method = "geomin")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 2.031329e-12 2.959919e-12
> LG <- geominT(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = TRUE, eps=1e-5, method = "geomin")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
>
>
> # infomaxQ
>
> LG <- infomaxQ(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "infomax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 8.975e-15 5.708275e-12
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Factor1 Factor2
Factor1 0.00000000000000000e+00 1.70503978286218327e-06
Factor2 1.70503978286218327e-06 0.00000000000000000e+00
>
> # changed to eps 1e-6 in order to pass the test.
> LG <- infomaxQ(L, normalize = TRUE, eps=1e-6)
> LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-6, method = "infomax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
>
>
> # infomaxT
>
> LG <- infomaxT(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = FALSE, eps=1e-5, method = "infomax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 4.178387e-12 4.433292e-12
> LG <- infomaxT(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = TRUE, eps=1e-5, method = "infomax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 2.276025e-11 2.200358e-11
>
>
> # CF Equamax Q
>
> LG <- GPFoblq(L, normalize = FALSE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
> LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 5.955028e-12 3.25221e-13
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
[,1] [,2]
[1,] -4.44089209850062616e-16 1.40617309019042125e-06
[2,] 1.40617309019042125e-06 -2.22044604925031308e-16
>
> LG <- GPFoblq(L, normalize = TRUE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
> LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 7.097006e-12 2.832944e-11
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
[,1] [,2]
[1,] 3.33066907387546962e-16 -1.64903800370375109e-06
[2,] -1.64903800370375109e-06 4.44089209850062616e-16
>
>
> # CF equamax T
>
> LG <- GPForth(L, normalize = FALSE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
> LGDF <- GPForth.df(L, normalize = FALSE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 4.167409e-11 4.79377e-11
> LG <- GPForth(L, normalize = TRUE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
> LGDF <- GPForth.df(L, normalize = TRUE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
>
>
> # targetQ
> LG <- targetQ(L, Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2), normalize=FALSE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "target",
+ methodArgs=list(Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2)))
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 3.94618e-11 3.993706e-11
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
>
> LG <- targetQ(L, Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2), normalize=TRUE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-5, method = "target",
+ methodArgs=list(Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2)))
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 3.719858e-12 5.00393e-12
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
>
> # targetT
>
> LG <- targetT(L, Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2), normalize=FALSE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = FALSE, eps=1e-5, method = "target",
+ methodArgs=list(Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2)))
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 1.885372e-11 2.512166e-11
>
> LG <- targetT(L, Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2), normalize=TRUE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = TRUE, eps=1e-5, method = "target",
+ methodArgs=list(Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2)))
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
>
>
> A <- matrix(c(0.664, 0.688, 0.492, 0.837, 0.705, 0.82, 0.661, 0.457, 0.765,
+ 0.322, 0.248, 0.304, -0.291, -0.314, -0.377, 0.397, 0.294, 0.428,
+ -0.075, 0.192, 0.224, 0.037, 0.155, -0.104, 0.077, 0-.488, 0.009),
+ ncol = 3)
> T0 <- matrix(NA, ncol = 3, nrow = 9)
> T0[1, 1] <- T0[2, 1] <- T0[1, 2] <- 0
> LG <- targetT(A, Target = T0)
> LGDF <- GPForth.df(A, method="target", methodArgs=list(Target = T0))
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
[,1] [,2] [,3]
[1,]
[2,]
[3,]
[4,]
[5,]
[6,]
[7,]
[8,]
[9,]
[,1] [,2] [,3]
SS loadings 4.298329e-09 1.12457e-08 5.386704e-10
>
> fuzz <- 1e-2 # Because loadings to zero, lower the bar to same results
> LG <- targetQ(A, Target = T0)
> LGDF <- GPFoblq.df(A, method="target", methodArgs=list(Target = T0))
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
[,1] [,2] [,3]
[1,]
[2,]
[3,] -4.737575e-01 4.441155e-01
[4,] 2.013065e+00 -1.875580e+00 -2.990878e-01
[5,] 1.786464e+00 -1.663424e+00 -2.666271e-01
[6,] 2.391433e+00 -2.229573e+00 -3.535882e-01
[7,] -3.829006e-01 3.582927e-01
[8,] 2.033391e-01 -1.933861e-01
[9,] -2.683019e-01 2.509629e-01
[,1] [,2] [,3]
SS loadings 1.28826 2.348151 0.6468996
>
> # pstT
> # This won't converge properly
> # No further investigations performed.
>
>
>
> cat("tests completed.\n")
tests completed.
>
>
>
> if (! all.ok) stop("some tests FAILED")
Error: some tests FAILED
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2025.7-1
Check: tests
Result: ERROR
Running ‘rotations.R’
Running the tests in ‘tests/rotations.R’ failed.
Complete output:
> # Tests here only compare against values computed with GPArotation code,
> # to ensure the regular and DF versions give the same result
>
>
> Sys.getenv("R_LIBS")
[1] "/tmp/Rtmp5acgfS/RLIBS_9ffd745d22cdb"
> library()
Packages in library '/tmp/Rtmp5acgfS/RLIBS_9ffd745d22cdb':
GPArotateDF Derivative Free Gradient Projection Factor
Rotation
GPArotation Gradient Projection Factor Rotation
Packages in library '/data/gannet/ripley/R/R-clang/library':
KernSmooth Functions for Kernel Smoothing Supporting Wand
& Jones (1995)
MASS Support Functions and Datasets for Venables and
Ripley's MASS
Matrix Sparse and Dense Matrix Classes and Methods
base The R Base Package
boot Bootstrap Functions
class Functions for Classification
cluster "Finding Groups in Data": Cluster Analysis
Extended Rousseeuw et al.
codetools Code Analysis Tools for R
compiler The R Compiler Package
datasets The R Datasets Package
foreign Read Data Stored by 'Minitab', 'S', 'SAS',
'SPSS', 'Stata', 'Systat', 'Weka', 'dBase', ...
grDevices The R Graphics Devices and Support for Colours
and Fonts
graphics The R Graphics Package
grid The Grid Graphics Package
lattice Trellis Graphics for R
methods Formal Methods and Classes
mgcv Mixed GAM Computation Vehicle with Automatic
Smoothness Estimation
nlme Linear and Nonlinear Mixed Effects Models
nnet Feed-Forward Neural Networks and Multinomial
Log-Linear Models
parallel Support for Parallel Computation in R
rpart Recursive Partitioning and Regression Trees
spatial Functions for Kriging and Point Pattern
Analysis
splines Regression Spline Functions and Classes
stats The R Stats Package
stats4 Statistical Functions using S4 Classes
survival Survival Analysis
tcltk Tcl/Tk Interface
tools Tools for Package Development
utils The R Utils Package
> require("GPArotation")
Loading required package: GPArotation
> require("GPArotateDF")
Loading required package: GPArotateDF
> search()
[1] ".GlobalEnv" "package:GPArotateDF" "package:GPArotation"
[4] "package:stats" "package:graphics" "package:grDevices"
[7] "package:utils" "package:datasets" "package:methods"
[10] "Autoloads" "package:base"
> Sys.info()
sysname
"Linux"
release
"6.18.13-100.fc42.x86_64"
version
"#1 SMP PREEMPT_DYNAMIC Thu Feb 19 20:58:08 UTC 2026"
nodename
"gannet.stats.ox.ac.uk"
machine
"x86_64"
login
"ripley"
user
"ripley"
effective_user
"ripley"
>
> require("stats")
>
> fuzz <- 1e-6
> all.ok <- TRUE
>
>
> data(ability.cov)
> L <- loadings(factanal(factors = 2, covmat=ability.cov))
>
> # quartimax
>
> LG <- quartimax(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = FALSE, eps=1e-5, method = "quartimax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 2.071172e-10 2.57213e-10
> LG <- quartimax(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = TRUE, eps=1e-5, method = "quartimax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 3.594091e-11 3.001116e-11
>
>
>
> # quartimin
>
> LG <- quartimin(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "quartimin")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 2.399083e-11 2.122768e-12
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Factor1 Factor2
Factor1 0.00000000000000000e+00 -2.40939117168714745e-06
Factor2 -2.40939117168714745e-06 0.00000000000000000e+00
>
> LG <- quartimin(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-5, method = "quartimin")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 1.159026e-12 1.261096e-11
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Factor1 Factor2
Factor1 0.00000000000000000e+00 -1.61240317597677318e-06
Factor2 -1.61240317597677318e-06 0.00000000000000000e+00
>
> # oblimax commented out as it is gives problem quite consistently
>
> #LG <- oblimax(L, normalize = FALSE, eps=1e-5)
> #LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "oblimax")
> # Oblimax fails for fuzz = 1e-6. But succeeds for 0.01
> # if( 0.01 < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
> # cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
> # cat("difference:\n")
> # print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
> # all.ok <- FALSE
> # }
> # if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
> # cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
> # cat("difference:\n")
> # print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
> # all.ok <- FALSE
> # }
>
> #LG <- oblimax(L, normalize = TRUE, eps=1e-5)
> #LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-5, method = "oblimax")
> # if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
> # cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
> # cat("difference:\n")
> # print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
> # all.ok <- FALSE
> # }
> # if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
> # cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
> # cat("difference:\n")
> # print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
> # all.ok <- FALSE
> # }
>
>
> # entropy
>
> LG <- entropy(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = FALSE, eps=1e-5, method = "entropy")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 2.380919e-10 2.879861e-10
> LG <- entropy(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = TRUE, eps=1e-5, method = "entropy")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 2.954305e-12 2.090064e-12
>
>
>
> # simplimax
>
> LG <- simplimax(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "simplimax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
>
> LG <- simplimax(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-5, method = "simplimax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
>
>
> # bentlerQ
>
> LG <- bentlerQ(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "bentler")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 5.007946e-09 1.588765e-10
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Factor1 Factor2
Factor1 0.00000000000000000e+00 -3.94838404905728524e-05
Factor2 -3.94838404905728524e-05 -3.33066907387546962e-16
>
> LG <- bentlerQ(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-5, method = "bentler")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 7.240893e-09 6.148903e-08
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Factor1 Factor2
Factor1 -2.22044604925031308e-16 -1.01274249892813195e-04
Factor2 -1.01274249892813195e-04 4.44089209850062616e-16
>
>
> # bentlerT
>
> LG <- bentlerT(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = FALSE, eps=1e-5, method = "bentler")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 1.091502e-10 1.295173e-10
> LG <- bentlerT(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = TRUE, eps=1e-5, method = "bentler")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 2.900089e-09 2.613755e-09
>
>
> # geominQ
>
> LG <- geominQ(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "geomin")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
>
> LG <- geominQ(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-5, method = "geomin")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
>
>
> # geominT
>
> LG <- geominT(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = FALSE, eps=1e-5, method = "geomin")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 2.031329e-12 2.959919e-12
> LG <- geominT(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = TRUE, eps=1e-5, method = "geomin")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
>
>
> # infomaxQ
>
> LG <- infomaxQ(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "infomax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 8.975e-15 5.708275e-12
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Factor1 Factor2
Factor1 0.00000000000000000e+00 1.70503978286218327e-06
Factor2 1.70503978286218327e-06 0.00000000000000000e+00
>
> # changed to eps 1e-6 in order to pass the test.
> LG <- infomaxQ(L, normalize = TRUE, eps=1e-6)
> LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-6, method = "infomax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
>
>
> # infomaxT
>
> LG <- infomaxT(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = FALSE, eps=1e-5, method = "infomax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 4.178387e-12 4.433292e-12
> LG <- infomaxT(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = TRUE, eps=1e-5, method = "infomax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 2.276025e-11 2.200358e-11
>
>
> # CF Equamax Q
>
> LG <- GPFoblq(L, normalize = FALSE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
> LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 5.955028e-12 3.25221e-13
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
[,1] [,2]
[1,] -4.44089209850062616e-16 1.40617309019042125e-06
[2,] 1.40617309019042125e-06 -2.22044604925031308e-16
>
> LG <- GPFoblq(L, normalize = TRUE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
> LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 7.097006e-12 2.832944e-11
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
[,1] [,2]
[1,] 3.33066907387546962e-16 -1.64903800370375109e-06
[2,] -1.64903800370375109e-06 4.44089209850062616e-16
>
>
> # CF equamax T
>
> LG <- GPForth(L, normalize = FALSE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
> LGDF <- GPForth.df(L, normalize = FALSE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 4.167409e-11 4.79377e-11
> LG <- GPForth(L, normalize = TRUE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
> LGDF <- GPForth.df(L, normalize = TRUE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
>
>
> # targetQ
> LG <- targetQ(L, Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2), normalize=FALSE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "target",
+ methodArgs=list(Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2)))
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 3.94618e-11 3.993706e-11
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
>
> LG <- targetQ(L, Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2), normalize=TRUE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-5, method = "target",
+ methodArgs=list(Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2)))
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 3.719858e-12 5.00393e-12
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
>
> # targetT
>
> LG <- targetT(L, Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2), normalize=FALSE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = FALSE, eps=1e-5, method = "target",
+ methodArgs=list(Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2)))
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 1.885372e-11 2.512166e-11
>
> LG <- targetT(L, Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2), normalize=TRUE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = TRUE, eps=1e-5, method = "target",
+ methodArgs=list(Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2)))
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
>
>
> A <- matrix(c(0.664, 0.688, 0.492, 0.837, 0.705, 0.82, 0.661, 0.457, 0.765,
+ 0.322, 0.248, 0.304, -0.291, -0.314, -0.377, 0.397, 0.294, 0.428,
+ -0.075, 0.192, 0.224, 0.037, 0.155, -0.104, 0.077, 0-.488, 0.009),
+ ncol = 3)
> T0 <- matrix(NA, ncol = 3, nrow = 9)
> T0[1, 1] <- T0[2, 1] <- T0[1, 2] <- 0
> LG <- targetT(A, Target = T0)
> LGDF <- GPForth.df(A, method="target", methodArgs=list(Target = T0))
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
[,1] [,2] [,3]
[1,]
[2,]
[3,]
[4,]
[5,]
[6,]
[7,]
[8,]
[9,]
[,1] [,2] [,3]
SS loadings 4.298329e-09 1.12457e-08 5.386704e-10
>
> fuzz <- 1e-2 # Because loadings to zero, lower the bar to same results
> LG <- targetQ(A, Target = T0)
> LGDF <- GPFoblq.df(A, method="target", methodArgs=list(Target = T0))
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
[,1] [,2] [,3]
[1,]
[2,]
[3,] -4.737575e-01 4.441155e-01
[4,] 2.013065e+00 -1.875580e+00 -2.990878e-01
[5,] 1.786464e+00 -1.663424e+00 -2.666271e-01
[6,] 2.391433e+00 -2.229573e+00 -3.535882e-01
[7,] -3.829006e-01 3.582927e-01
[8,] 2.033391e-01 -1.933861e-01
[9,] -2.683019e-01 2.509629e-01
[,1] [,2] [,3]
SS loadings 1.28826 2.348151 0.6468996
>
> # pstT
> # This won't converge properly
> # No further investigations performed.
>
>
>
> cat("tests completed.\n")
tests completed.
>
>
>
> if (! all.ok) stop("some tests FAILED")
Error: some tests FAILED
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2025.7-1
Check: tests
Result: ERROR
Running ‘rotations.R’ [137s/178s]
Running the tests in ‘tests/rotations.R’ failed.
Complete output:
> # Tests here only compare against values computed with GPArotation code,
> # to ensure the regular and DF versions give the same result
>
>
> Sys.getenv("R_LIBS")
[1] "/data/gannet/ripley/R/packages/tests-devel/GPArotateDF.Rcheck:/data/gannet/ripley/R/test-dev:/data/gannet/ripley/R/test-BioCdata"
> library()
Packages in library '/data/gannet/ripley/R/packages/tests-devel/GPArotateDF.Rcheck':
GPArotateDF Derivative Free Gradient Projection Factor
Rotation
Packages in library '/data/gannet/ripley/R/test-dev':
AATtools Reliability and Scoring Routines for the
Approach-Avoidance Task
ABACUS Apps Based Activities for Communicating and
Understanding Statistics
ABC.RAP Array Based CpG Region Analysis Pipeline
ABCDscores Summary Scores of the Adolescent Brain
Cognitive Development (ABCD) Study
ABCanalysis Computed ABC Analysis
ABCoptim Implementation of Artificial Bee Colony (ABC)
Optimization
ABHgenotypeR Easy Visualization of ABH Genotypes
ABM Agent Based Model Simulation Framework
ABPS The Abnormal Blood Profile Score to Detect
Blood Doping
ABRSQOL Quality-of-Life Solver for "Measuring Quality
of Life under Spatial Frictions"
ABSurvTDC Survival Analysis using Time Dependent
Covariate for Animal Breeding
ACDm Tools for Autoregressive Conditional Duration
Models
ACE.CoCo Analysis of Correlated High-Dimensional
Expression (ACE) Data
ACEP Análisis Computacional de Eventos de Protesta
ACEsearch 'ACE' Search Engine API
ACEsimFit ACE Kin Pair Data Simulations and Model Fitting
ACEt Estimating Dynamic Heritability and Twin Model
Comparison
ACNE Affymetrix SNP Probe-Summarization using
Non-Negative Matrix Factorization
ACSWR A Companion Package for the Book "A Course in
Statistics with R"
ACTCD Asymptotic Classification Theory for Cognitive
Diagnosis
ACV Optimal Out-of-Sample Forecast Evaluation and
Testing under Stationarity
ACWR Acute Chronic Workload Ratio Calculation
ADAPTS Automated Deconvolution Augmentation of
Profiles for Tissue Specific Cells
ADCT Adaptive Design in Clinical Trials
ADDT Analysis of Accelerated Destructive Degradation
Test Data
ADER Data Analysis in Ecology
ADGofTest Anderson-Darling GoF test
ADLP Accident and Development Period Adjusted Linear
Pools for Actuarial Stochastic Reserving
ADMM Algorithms using Alternating Direction Method
of Multipliers
ADP Adoption Probability, Triers and Users Rate of
a New Product
ADPF Use Least Squares Polynomial Regression and
Statistical Testing to Improve Savitzky-Golay
ADSIHT Adaptive Double Sparse Iterative Hard
Thresholding
ADTSA Time Series Analysis
ADVICE Automatic Direct Variable Selection via
Interrupted Coefficient Estimation
AEDForecasting Change Point Analysis in ARIMA Forecasting
AEP Statistical Modelling for Asymmetric
Exponential Power Distribution
AER Applied Econometrics with R
AEenrich Adverse Event Enrichment Tests
AFFECT Accelerated Functional Failure Time Model with
Error-Contaminated Survival Times
AFR Toolkit for Regression Analysis of Kazakhstan
Banking Sector Data
AGD Analysis of Growth Data
AGHmatrix Relationship Matrices for Diploid and
Autopolyploid Species
AGPRIS AGricultural PRoductivity in Space
AHMbook Functions and Data for the Book 'Applied
Hierarchical Modeling in Ecology' Vols 1 and 2
AHPGaussian New Multicriteria Method: AHPGaussian
AHPWR Compute Analytic Hierarchy Process
AHPhybrid AHP Hybrid Method
AHPtools Consistency in the Analytic Hierarchy Process
AHSurv Flexible Parametric Accelerated Hazards Models
AIBias Longitudinal Bias Auditing for Sequential
Decision Systems
AICcmodavg Model Selection and Multimodel Inference Based
on (Q)AIC(c)
AID Box-Cox Power Transformation
AIDA Analysis of Interval DAta
AIFFtools Read AIFF Files and Convert to WAVE Format
AIGRA Agentic Item Generation, Review, and Analysis
AIGovernance Statistical Auditing and Governance Reporting
for Employment AI Systems
AIPW Augmented Inverse Probability Weighting
AIUQ Ab Initio Uncertainty Quantification
AIscreenR AI Screening Tools in R for Systematic
Reviewing
ALDEx2 Analysis Of Differential Abundance Taking
Sample and Scale Variation Into Account
ALDEx3 Linear Models for Sequence Count Data
ALDqr Quantile Regression Using Asymmetric Laplace
Distribution
ALFAM2 Dynamic Model of Ammonia Emission from
Field-Applied Manure
ALLSPICER ALLelic Spectrum of Pleiotropy Informed
Correlated Effects
ALS Multivariate Curve Resolution Alternating Least
Squares (MCR-ALS)
ALSCPC Accelerated line search algorithm for
simultaneous orthogonal transformation of
several positive definite symmetric matrices to
nearly diagonal form.
ALUES Agricultural Land Use Evaluation System
ALassoSurvIC Adaptive Lasso for the Cox Regression with
Interval Censored and Possibly Left Truncated
Data
AMAPVox LiDAR Data Voxelisation
AMCP A Model Comparison Perspective
AMCTestmakeR Generate LaTeX Code for Auto-Multiple-Choice
(AMC)
AMDconfigurations Geometric Analysis of Configurations in
High-Dimensional Spaces
AMIM Compute the Adjusted Market Inefficiency
Measure
AMISforInfectiousDiseases
Implement the AMIS Algorithm for Infectious
Disease Models
AMModels Adaptive Management Model Manager
AMPLE Shiny Apps to Support Capacity Building on
Harvest Control Rules
AMR Antimicrobial Resistance Data Analysis
ANN2 Artificial Neural Networks for Anomaly
Detection
ANOFA Analyses of Frequency Data
ANOPA Analyses of Proportions using Anscombe
Transform
ANOVAIREVA Interactive Document for Working with Analysis
of Variance
ANOVAShiny Interactive Document for Working with Analysis
of Variance
ANOVAShiny2 Interactive Document for Working with Analysis
of Variance
ANSM5 Functions and Data for the Book "Applied
Nonparametric Statistical Methods", 5th Edition
AOUSDOHtools Analyzing AOU SDOH Survey Data
AOV1R Inference in the Balanced One-Way ANOVA Model
with Random Factor
AOboot Bootstrapping in Different One-Way and Two-Way
ANOVA
APCI A New Age-Period-Cohort Model for Describing
and Investigating Inter-Cohort Differences and
Life Course Dynamics
APCalign Resolving Plant Taxon Names Using the
Australian Plant Census
APCanalysis Analysis of Unreplicated Orthogonal Experiments
using All Possible Comparisons
APCinteraction Nonparametric Interaction Tests in Balanced
Two-Way ANOVA Models
APCtools Routines for Descriptive and Model-Based APC
Analysis
APFr Multiple Testing Approach using Average Power
Function (APF) and Bayes FDR Robust Estimation
APIS Auto-Adaptive Parentage Inference Software
Tolerant to Missing Parents
APPEstimation Adjusted Prediction Model Performance
Estimation
APRScenario Structural Scenario Analysis for Bayesian
Structural Vector Autoregression Models
APS Analysing Prediction Stability of
Non-Deterministic Prediction Models
APTIcalc Air Pollution Tolerance Index (APTI) Calculator
APackOfTheClones Visualization of Clonal Expansion for Single
Cell Immune Profiles
AQEval Air Quality Evaluation
AQLSchemes Retrieving Acceptance Sampling Schemes
AQuadtree Confidentiality of Spatial Point Data
AQuality Water and Measurements Quality
ARCHISSUR Active Recovery of a Constrained and Hidden Set
by Stepwise Uncertainty Reduction Strategy
ARCensReg Fitting Univariate Censored Linear Regression
Model with Autoregressive Errors
ARCokrig Autoregressive Cokriging Models for
Multifidelity Codes
ARDECO Annual Regional Database of the European
Commission (ARDECO)
ARDL ARDL, ECM and Bounds-Test for Cointegration
ARGOS Automatic Regression for Governing Equations
(ARGOS)
ARHT Adaptable Regularized Hotelling's T^2 Test for
High-Dimensional Data
ARIMAANN Time Series Forecasting using ARIMA-ANN Hybrid
Model
ARIbrain All-Resolution Inference
ARMALSTM Fitting of Hybrid ARMA-LSTM Models
ARPobservation Tools for Simulating Direct Behavioral
Observation Recording Procedures Based on
Alternating Renewal Processes
ARTofR To Insert Title, Divider, and Block of Comments
ARTool Aligned Rank Transform
ARTtransfer Adaptive and Robust Pipeline for Transfer
Learning
ARUtools Management and Processing of Autonomous
Recording Unit (ARU) Data
ASGS.foyer Interface to the Australian Statistical
Geography Standard
ASML Algorithm Portfolio Selection with Machine
Learning
ASMap Linkage Map Construction using the MSTmap
Algorithm
ASMbook Functions for the Book "Applied Statistical
Modeling for Ecologists"
ASRgenomics Complementary Genomic Functions
ASSA Applied Singular Spectrum Analysis (ASSA)
ASSISTant Adaptive Subgroup Selection in Group Sequential
Trials
AST Age-Spatial-Temporal Model
ASV Stochastic Volatility Models with or without
Leverage
ATAforecasting Automatic Time Series Analysis and Forecasting
using the Ata Method
ATE.ERROR Estimating ATE with Misclassified Outcomes and
Mismeasured Covariates
ATNr Run Allometric Trophic Networks Models
ATQ Alert Time Quality - Evaluating Timely Epidemic
Metrics
ATR Alternative Tree Representation
ATbounds Bounding Treatment Effects by Limited
Information Pooling
AUC Threshold Independent Performance Measures for
Probabilistic Classifiers
AUKtest Calculate the AUK Estimator
AUtests Approximate Unconditional and Permutation Tests
AV1R 'AV1' Video Encoding for Biological Microscopy
Data
AVGAS A Variable Selection using Genetic Algorithms
AWR 'AWS' Java 'SDK' for R
AWR.Kinesis Amazon 'Kinesis' Consumer Application for
Stream Processing
AZIAD Analyzing Zero-Inflated and Zero-Altered Data
AalenJohansen Conditional Aalen-Johansen Estimation
AbSolution Interactive Feature-Based Analysis of AIRR-Seq
Data
Ac3net Inferring Directional Conservative Causal Core
Gene Networks
AcademicThemes Colour Plots with Palettes from Academic
Institutions
AccSamplingDesign Acceptance Sampling Plans Design
AccelStab Accelerated Stability Kinetic Modelling
AcceptReject Acceptance-Rejection Method for Generating
Pseudo-Random Observations
AcceptanceSampling Creation and Evaluation of Acceptance Sampling
Plans
Achilles Achilles Data Source Characterization
ActCR Extract Circadian Rhythms Metrics from
Actigraphy Data
ActiveDriver Finding Cancer Driver Proteins with Enriched
Mutations in Post-Translational Modification
Sites
ActiveDriverWGS A Driver Discovery Tool for Cancer Whole
Genomes
ActiveLearning4SPM Active Learning for Process Monitoring
ActivePathways Integrative Pathway Enrichment Analysis of
Multivariate Omics Data
ActivityIndex Activity Index Calculation using Raw
'Accelerometry' Data
ActuarialM Computation of Actuarial Measures Using Bell G
Family
AcuityView A Package for Displaying Visual Scenes as They
May Appear to an Animal with Lower Acuity
AdIsMF Adsorption Isotherm Model Fitting
AdMit Adaptive Mixture of Student-t Distributions
AdaSampling Adaptive Sampling for Positive Unlabeled and
Label Noise Learning
AdapDiscom Adaptive Sparse Regression for Block Missing
Multimodal Data
AdapSamp Adaptive Sampling Algorithms
AdaptGauss Gaussian Mixture Models (GMM)
AdaptiveBoxplot FDR(BH) Boxplot and FWER(Holm) Boxplot
AddiVortes (Bayesian) Additive Voronoi Tessellations
AdequacyModel Adequacy of Probabilistic Models and General
Purpose Optimization
AdhereR Adherence to Medications
AdhereRViz Adherence to Medications
AdmixPoly Global and Local Admixture Inference in
Polyploids
AdsorpR Adsorption Isotherm Models
AdvBinomApps Upper Clopper-Pearson Confidence Limits for
Burn-in Studies under Additional Available
Information
AdvDif4 Solving 1D Advection Bi-Flux Diffusion Equation
AdvancedBasketballStats
Advanced Basketball Statistics
AdverseEvents 'shiny' Application for Adverse Event Analysis
of 'OnCore' Data
AeRobiology A Computational Tool for Aerobiological Data
AeroEvapR Estimating Reservoir Evaporation via
Aerodynamic Approach
AeroSampleR Estimate Aerosol Particle Collection Through
Sample Lines
AgeBandDecomposition Age Band Decomposition Method for Tree Ring
Standardization
AgePopDenom Model Fine-Scale Age-Structured Population Data
using Open-Source Data
AgeTopicModels Inferring Age-Dependent Disease Topic from
Diagnosis Data
AggregateR Aggregate Numeric, Date and Categorical
Variables
AgreementInterval Agreement Interval of Two Measurement Methods
AgriDiversiX Agricultural Crop Diversification Indices
Analysis
AgroR Experimental Statistics and Graphics for
Agricultural Sciences
AgroReg Regression Analysis Linear and Nonlinear for
Agriculture
AgroTech Data Analysis of Pesticide Application
Technology
AhoCorasickTrie Fast Searching for Multiple Keywords in
Multiple Texts
AiES Axon Integrity Evaluation System for Microscopy
Images
AirExposure Exposure Model to Air Pollutants Based on
Mobility and Daily Activities
AirMonitor Air Quality Data Analysis
AirScreen Feature Screening via Adaptive Iterative Ridge
(Air-HOLP and Air-OLS)
AirportProblems Analysis of Cost Allocation for Airport
Problems
Ake Associated Kernel Estimations
AlgDesign Algorithmic Experimental Design
AlgeriAPIs Access Algerian Data via Public APIs
AlignLV Multiple Group Item Response Theory Alignment
Helpers for 'lavaan' and 'mirt'
AllMetrics Calculating Multiple Performance Metrics of a
Prediction Model
AlleleRetain Allele Retention, Inbreeding, and Demography
AlleleShift Predict and Visualize Population-Level Changes
in Allele Frequencies in Response to Climate
Change
AllelicSeries Allelic Series Test
Allspice RNA-Seq Profile Classifier
AlphaPart Partition/Decomposition of Breeding Values by
Paths of Information
AlphaSimR Breeding Program Simulations
AlteredPQR Detection of Altered Protein Quantitative
Relationships
Amelia A Program for Missing Data
AmesHousing The Ames Iowa Housing Data
AmigaFFH Commodore Amiga File Format Handler
AmmoniaConcentration Un-Ionized Ammonia Concentration
AmoudSurv Tractable Parametric Odds-Based Regression
Models
AmpGram Prediction of Antimicrobial Peptides
AmpliconDuo Statistical Analysis of Amplicon Data of the
Same Sample to Identify Artefacts
AmyloGram Prediction of Amyloid Proteins
Anaconda Targeted Differential and Global Enrichment
Analysis of Taxonomic Rank by Shared Asvs
Analitica Exploratory Data Analysis, Group Comparison
Tools, and Other Procedures
AnalyzeFMRI Functions for Analysis of fMRI Datasets Stored
in the ANALYZE or 'NIFTI' Format
AnanseSeurat Construct ANANSE GRN-Analysis Seurat
AncReg Ancestor Regression
AnchorRegression Perform AnchorRegression
Andromeda Asynchronous Disk-Based Representation of
Massive Data
AnglerCreelSurveySimulation
Simulate a Bus Route Creel Survey of Anglers
AnimalSequences Analyse Animal Sequential Behaviour and
Communication
AnnoProbe Annotate the Gene Symbols for Probes in
Expression Array
AnnotationBustR Extract Subsequences from GenBank Annotations
AnnotationDbi Manipulation of SQLite-based annotations in
Bioconductor
AnnotationFilter Facilities for Filtering Bioconductor
Annotation Resources
AnnotationForge Tools for building SQLite-based annotation data
packages
AnnotationHub Client to access AnnotationHub resources
AntAngioCOOL Anti-Angiogenic Peptide Prediction
AntClassify Functional Guilds, Invasion Status, Endemism,
and Rarity of Ants
AnthropMMD An R Package for the Mean Measure of Divergence
(MMD)
Anthropometry Statistical Methods for Anthropometric Data
AntibodyForests Delineating Inter- And Intra-Antibody
Repertoire Evolution
AntibodyTiters Antibody Titer Analysis of Vaccinated Patients
AntsNet Unified Simulation of Isomorphisms Between Ant
Colony Intelligence and Machine Learning
AnxietySleep Sleep Quality and Anxiety in Confinement
Aoptbdtvc A-Optimal Block Designs for Comparing Test
Treatments with Controls
ApacheLogProcessor Process the Apache Web Server Log Files
AplosNCA Use 'Aplos NCA API' for Pharmacokinetic
Analysis
Apoderoides Prioritize and Delete Erroneous Taxa in a Large
Phylogenetic Tree
AppliedPredictiveModeling
Functions and Data Sets for 'Applied Predictive
Modeling'
ApplyPolygenicScore Utilities for the Application of a Polygenic
Score to a VCF
AquaAnalytix Water Quality Analysis
AquaBEHER Estimation and Prediction of Wet Season
Calendar and Soil Water Balance for Agriculture
AquaEnv Integrated Development Toolbox for Aquatic
Chemical Model Generation
AquaticLifeHistory Life History Analysis Tools
ArArRedux Rigorous Data Reduction and Error Propagation
of Ar40 / Ar39 Data
ArCo Artificial Counterfactual Package
ArDec Time Series Autoregressive-Based Decomposition
ArchaeoPhases Post-Processing of Markov Chain Monte Carlo
Simulations for Chronological Modelling
ArchaeoPhases.dataset Data Sets for 'ArchaeoPhases' Vignettes
ArchipelagoEngine Spatial Weight Construction for Archipelagic
Geographies
ArctosR An Interface to the 'Arctos' Database
ArgentinAPI Access Argentinian Data via APIs and Curated
Datasets
Argentum Access and Import WMS and WFS Data from
Argentine Organizations
AriGaMyANNSVR Hybrid ARIMA-GARCH and Two Specially Designed
ML-Based Models
Arothron Geometric Morphometric Methods and Virtual
Anthropology Tools
ArrayExpress Access the ArrayExpress Collection at EMBL-EBI
Biostudies and build Bioconductor data
structures: ExpressionSet, AffyBatch,
NChannelSet
ArvindSt Five Novel Stochastic Regression Models with
Arvind-Distributed Errors and Effects
AsianOption Asian Option Pricing under Price Impact
AsioHeaders 'Asio' C++ Header Files
AssetPricing Optimal Pricing of Assets with Fixed Expiry
Date
AssocBin Measuring Association with Recursive Binning
AssociationExplorer2 A User-Friendly 'shiny' Application for
Exploring Associations and Visual Patterns
AssumpSure 'shiny' Application for Statistical Test
Assumption Checking and Guidance
AsthmaNHANES Asthma Data Sets from NHANES
AsyK Kernel Density Estimation
AsymmetricSORDs Asymmetric Second Order Rotatable Designs
(AsymmetricSORDs)
AsynchLong Regression Analysis of Sparse Asynchronous
Longitudinal Data
AteMeVs Average Treatment Effects with Measurement
Error and Variable Selection for Confounders
Athlytics Sports Physiology Analysis from Local 'Strava'
Data
AtlasMaker Make Multiple 'leaflet' Maps in 'Shiny'
AtmChile Download Air Quality and Meteorological
Information of Chile
AudioScatter Audiogram Scattergrams
AurieLSHGaussian Creates a Neighbourhood Using Locality
Sensitive Hashing for Gaussian Projections
AustralianPoliticians Provides Datasets About Australian Politicians
AutoAds Advertisement Metrics Calculation
AutoDeskR An Interface to the 'AutoDesk' 'API' Platform
AutoMLR Automated Multi-Outcome Machine Learning
Combination Models
AutoNN Automatic Neural Network Modeling for Time
Series Forecasting
AutoPlots Creating Echarts Visualizations as Easy as
Possible
AutoScore An Interpretable Machine Learning-Based
Automatic Clinical Score Generator
AutoStepwiseGLM Builds Stepwise GLMs via Train and Test
Approach
AutoTransQF A Novel Automatic Shifted Log Transformation
AutoWMM Perform the Weighted Multiplier Method on Trees
Autoplotprotein Development of Visualization Tools for Protein
Sequence
AutoregressionMDE Minimum Distance Estimation in Autoregressive
Model
Autoseed Retrieve Disease-Related Genes from Public
Sources
AuxSurvey Survey Analysis with Auxiliary Discretized
Variables
AvInertia Calculate the Inertial Properties of a Flying
Bird
AzureAppInsights Include Azure Application Insights in Shiny
Apps
AzureAuth Authentication Services for Azure Active
Directory
AzureCognitive Interface to Azure Cognitive Services
AzureContainers Interface to 'Container Instances', 'Docker
Registry' and 'Kubernetes' in 'Azure'
AzureCosmosR Interface to the 'Azure Cosmos DB' 'NoSQL'
Database Service
AzureGraph Simple Interface to 'Microsoft Graph'
AzureKeyVault Key and Secret Management in 'Azure'
AzureKusto Interface to 'Kusto'/'Azure Data Explorer'
AzureQstor Interface to 'Azure Queue Storage'
AzureRMR Interface to 'Azure Resource Manager'
AzureStor Storage Management in 'Azure'
AzureTableStor Interface to the Table Storage Service in
'Azure'
AzureVM Virtual Machines in 'Azure'
AzureVMmetadata Interface to Azure Virtual Machine Instance
Metadata
AzureVision Interface to Azure Computer Vision Services
BACCO Bayesian Analysis of Computer Code Output
(BACCO)
BACprior Choice of Omega in the BAC Algorithm
BAGofT A Binary Regression Adaptive Goodness-of-Fit
Test (BAGofT)
BALLI Expression RNA-Seq Data Analysis Based on
Linear Mixed Model
BAMBI Bivariate Angular Mixture Models
BAMMtools Analysis and Visualization of Macroevolutionary
Dynamics on Phylogenetic Trees
BANAM Bayesian Analysis of the Network
Autocorrelation Model
BAQM Babson Analytics and Quantitative Methods Tools
BAR Bayesian Adaptive Randomization
BAREB A Bayesian Repulsive Biclustering Model for
Periodontal Data
BART Bayesian Additive Regression Trees
BAS Bayesian Variable Selection and Model Averaging
using Bayesian Adaptive Sampling
BASS Bayesian Adaptive Spline Surfaces
BASiNET Classification of RNA Sequences using Complex
Network Theory
BASiNETEntropy Classification of RNA Sequences using Complex
Network and Information Theory
BAT Biodiversity Assessment Tools
BATSS Bayesian Adaptive Trial Simulator Software
(BATSS) for Generalised Linear Models
BAYSTAR On Bayesian Analysis of Threshold
Autoregressive Models
BAwiR Analysis of Basketball Data
BB Solving and Optimizing Large-Scale Nonlinear
Systems
BBEST Bayesian Estimation of Incoherent Neutron
Scattering Backgrounds
BBI Benthic Biotic Indices Calculation from
Composition Data
BBmisc Miscellaneous Helper Functions for B. Bischl
BCA1SG Block Coordinate Ascent with One-Step
Generalized Rosen Algorithm
BCBCSF Bias-Corrected Bayesian Classification with
Selected Features
BCC1997 Calculation of Option Prices Based on a
Universal Solution
BCClong Bayesian Consensus Clustering for Multiple
Longitudinal Features
BCD Bivariate Distributions via Conditional
Specification
BCDAG Bayesian Structure and Causal Learning of
Gaussian Directed Graphs
BCEA Bayesian Cost Effectiveness Analysis
BCEE The Bayesian Causal Effect Estimation Algorithm
BCFM Bayesian Clustering Factor Models
BCHM Clinical Trial Calculation Based on BCHM Design
BCRA Breast Cancer Risk Assessment
BCSreg Box-Cox Symmetric Regression for Non-Negative
Data
BCgee Bias-Corrected Estimates for Generalized Linear
Models for Dependent Data
BDAlgo Bloom Detecting Algorithm
BDEsize Efficient Determination of Sample Size in
Balanced Design of Experiments
BDWreg Bayesian Inference for Discrete Weibull
Regression
BDgraph Bayesian Structure Learning in Graphical Models
using Birth-Death MCMC
BEACH Biometric Exploratory Analysis Creation House
BED Biological Entity Dictionary (BED)
BEDASSLE Quantifies Effects of Geo/Eco Distance on
Genetic Differentiation
BEDMatrix Extract Genotypes from a PLINK .bed File
BEKKs Multivariate Conditional Volatility Modelling
and Forecasting
BEMPdata Access the Bangladesh Environmental Mobility
Panel Dataset
BEND Bayesian Estimation of Nonlinear Data (BEND)
BERTopic Topic Modeling with 'BERTopic'
BESTree Branch-Exclusive Splits Trees
BET Binary Expansion Testing
BElikelihood Likelihood Method for Evaluating Bioequivalence
BFF Bayes Factor Functions
BFI Bayesian Federated Inference
BFM Beta Factor Model
BFS Get Data from the Swiss Federal Statistical
Office
BFpack Flexible Bayes Factor Testing of Scientific
Expectations
BGData A Suite of Packages for Analysis of Big Genomic
Data
BGFD Bell-G and Complementary Bell-G Family of
Distributions
BGGE Bayesian Genomic Linear Models Applied to GE
Genome Selection
BGGM Bayesian Gaussian Graphical Models
BGLR Bayesian Generalized Linear Regression
BGPhazard Markov Beta and Gamma Processes for Modeling
Hazard Rates
BGVAR Bayesian Global Vector Autoregressions
BGmisc An R Package for Extended Behavior Genetics
Analysis
BH Boost C++ Header Files
BHAI Estimate the Burden of Healthcare-Associated
Infections
BHMSMAfMRI Bayesian Hierarchical Multi-Subject Multiscale
Analysis of Functional MRI (fMRI) Data
BHSBVAR Structural Bayesian Vector Autoregression
Models
BI Blinding Assessment Indexes for Randomized,
Controlled, Clinical Trials
BICORN Integrative Inference of De Novo Cis-Regulatory
Modules
BIDistances Bioinformatic Distances
BIEN Tools for Accessing the Botanical Information
and Ecology Network Database
BIFIEsurvey Tools for Survey Statistics in Educational
Assessment
BIGDAWG Case-Cotrol Analysis of Multi-Allelic Loci
BIGL Biochemically Intuitive Generalized Loewe Model
BIGr Breeding Insight Genomics Functions for
Polyploid and Diploid Species
BINCOR Estimate the Correlation Between Two Irregular
Time Series
BIOEFIC Relative Bioefficiency via Simultaneous
Regressions
BIOMASS Estimating Aboveground Biomass and Its
Uncertainty in Tropical Forests
BIOdry Multilevel Modeling of Dendroclimatical
Fluctuations
BIS Programmatic Access to Bank for International
Settlements Data
BISdata Download Data from the Bank for International
Settlements (BIS)
BKP Beta Kernel Process Modeling
BKT Bayesian Knowledge Tracing Model
BKTR Bayesian Kernelized Tensor Regression
BLA Boundary Line Analysis
BLMEngineInR Biotic Ligand Model Engine
BLModel Black-Litterman Posterior Distribution
BLOQ Methods to Impute and Analyze Data with BLOQ
Observations
BLPestimatoR Performs a BLP Demand Estimation
BLR Bayesian Linear Regression
BLRShiny Interactive Document for Working with Binary
Logistic Regression Analysis
BLRShiny2 Interactive Document for Working with Binary
Logistic Regression Analysis
BLSM Bayesian Latent Space Model
BLSloadR Download Time Series Data from the U.S. Bureau
of Labor Statistics
BMA Bayesian Model Averaging
BMAmevt Multivariate Extremes: Bayesian Estimation of
the Spectral Measure
BMEmapping Spatial Interpolation using Bayesian Maximum
Entropy (BME)
BMIselect Bayesian MI-LASSO for Variable Selection on
Multiply-Imputed Datasets
BMRMM An Implementation of the Bayesian Markov
(Renewal) Mixed Models
BMS Bayesian Model Averaging Library
BMT The BMT Distribution
BMconcor CONCOR for Structural- And Regular-Equivalence
Blockmodeling
BMisc Miscellaneous Functions for Panel Data,
Quantiles, and Printing Results
BNPTSclust A Bayesian Nonparametric Algorithm for Time
Series Clustering
BNPmix Bayesian Nonparametric Mixture Models
BNSP Bayesian Non- And Semi-Parametric Model Fitting
BNrich Pathway Enrichment Analysis Based on Bayesian
Network
BOIN Bayesian Optimal INterval (BOIN) Design for
Single-Agent and Drug- Combination Phase I
Clinical Trials
BOJ Interface to Bank of Japan Statistics
BOLDconnectR Retrieve, Transform and Analyze the Barcode of
Life Data Systems Data
BOP2FE Bayesian Optimal Phase II Design with Futility
and Efficacy Stopping Boundaries
BORG Bounded Outcome Risk Guard for Model Evaluation
BPM Bayesian Purity Model to Estimate Tumor Purity
BPrinStratTTE Causal Effects in Principal Strata Defined by
Antidrug Antibodies
BRACE Bias Reduction Through Analysis of Competing
Events (BRACE)
BRACoD.R BRACoD: Bayesian Regression Analysis of
Compositional Data
BRCore A Unified Framework for Identification and
Ecological Interpretation of Microbial Data
from Bioenergy Research Centers
BREADR Estimates Degrees of Relatedness (Up to the
Second Degree) for Extreme Low-Coverage Data
BRETIGEA Brain Cell Type Specific Gene Expression
Analysis
BRINDA Computation of BRINDA Adjusted Micronutrient
Biomarkers for Inflammation
BRISC Fast Inference for Large Spatial Datasets using
BRISC
BRL Beta Record Linkage
BRPL Methods for Bivariate Poverty Line Calculations
BRRAT Bayesian Regression Robustness Assessment Test
BRcal Boldness-Recalibration of Binary Events
BSDA Basic Statistics and Data Analysis
BSET A Bayesian Surrogate Evaluation Test
BSGW Bayesian Survival Model with Lasso Shrinkage
Using Generalized Weibull Regression
BSL Bayesian Synthetic Likelihood
BSPADATA Bayesian Proposal to Fit Spatial Econometric
Models
BSPBSS Bayesian Spatial Blind Source Separation
BSS Brownian Semistationary Processes
BSSasymp Asymptotic Covariance Matrices of Some BSS
Mixing and Unmixing Matrix Estimates
BSSoverSpace Blind Source Separation for Multivariate
Spatial Data using Eigen Analysis
BSSprep Whitening Data as Preparation for Blind Source
Separation
BSTFA Bayesian Spatio-Temporal Factor Analysis Model
BSTZINB Association Among Disease Counts and
Socio-Environmental Factors
BSW Fitting a Log-Binomial Model Using the
Bekhit–Schöpe–Wagenpfeil (BSW) Algorithm
BSagri Safety Assessment in Agricultural Field Trials
BSgenome Software infrastructure for efficient
representation of full genomes and their SNPs
BTIME Bayesian Hierarchical Models for Single-Cell
Protein Data
BTLLasso Modelling Heterogeneity in Paired Comparison
Data
BTM Biterm Topic Models for Short Text
BTSPAS Bayesian Time-Stratified Population Analysis
BTSR Bounded Time Series Regression
BTTL Bradley-Terry Transfer Learning
BTWAR Butterworth-Induced Autoregressive Model
BTYD Implementing BTYD Models with the Log Sum Exp
Patch
BTdecayLasso Bradley-Terry Model with Exponential Time
Decayed Log-Likelihood and Adaptive Lasso
BTtest Estimate the Number of Factors in Large
Nonstationary Datasets
BUCSS Bias and Uncertainty Corrected Sample Size
BVAR Hierarchical Bayesian Vector Autoregression
BVARverse Tidy Bayesian Vector Autoregression
BWGS BreedWheat Genomic Selection Pipeline
BWStest Baumgartner Weiss Schindler Test of Equal
Distributions
BaM Functions and Datasets for "Bayesian Methods: A
Social and Behavioral Sciences Approach"
BaSTA Age-Specific Bayesian Survival Trajectory
Analysis from Incomplete Census or
Capture-Recapture/Recovery Data
BaSkePro Bayesian Model to Archaeological Faunal
Skeletal Profiles
BacenAPI Data Collection from the Central Bank of Brazil
BagWhiskerPlot Bag-and-Whisker Plot
BalanceCheck Balance Check for Multiple Covariates in
Matched Observational Studies
BalancedSampling Balanced and Spatially Balanced Sampling
Ball Statistical Inference and Sure Independence
Screening via Ball Statistics
BallMapper The Ball Mapper Algorithm
BarBorGradient Function Minimum Approximator
BarcodingR Species Identification using DNA Barcodes
Barnard Barnard's Unconditional Test
BaseSet Working with Sets the Tidy Way
BaseTempSeed Estimation of Seed Germination Base Temperature
in Thermal Modelling
BasketTrial Bayesian Basket Trial Design and Analysis
BasketballAnalyzeR Analysis and Visualization of Basketball Data
BatchExperiments Statistical Experiments on Batch Computing
Clusters
BatchGetSymbols Downloads and Organizes Financial Data for
Multiple Tickers
BatchJobs Batch Computing with R
BayLum Chronological Bayesian Models Integrating
Optically Stimulated Luminescence and
Radiocarbon Age Dating
Bayenet Robust Bayesian Elastic Net
BayesAT Bayesian Adaptive Trial
BayesBP Bayesian Estimation using Bernstein Polynomial
Fits Rate Matrix
BayesBinMix Bayesian Estimation of Mixtures of Multivariate
Bernoulli Distributions
BayesBrainMap Estimate Brain Networks and Connectivity with
Population-Derived Priors
BayesCACE Bayesian Model for CACE Analysis
BayesCPclust A Bayesian Approach for Clustering
Constant-Wise Change-Point Data
BayesCR Bayesian Analysis of Censored Regression Models
Under Scale Mixture of Skew Normal
Distributions
BayesCTDesign Two Arm Bayesian Clinical Trial Design with and
Without Historical Control Data
BayesCVI Bayesian Cluster Validity Index
BayesChange Bayesian Methods for Change Point Analysis
BayesCombo Bayesian Evidence Combination
BayesDIP Bayesian Decreasingly Informative Priors for
Early Termination Phase II Trials
BayesDecon Density Deconvolution Using Bayesian
Semiparametric Methods
BayesDesign Bayesian Single-Arm Design with Survival
Endpoints
BayesDissolution Bayesian Models for Dissolution Testing
BayesERtools Bayesian Exposure-Response Analysis Tools
BayesESS Determining Effective Sample Size
BayesFBHborrow Bayesian Dynamic Borrowing with Flexible
Baseline Hazard Function
BayesFM Bayesian Inference for Factor Modeling
BayesFactor Computation of Bayes Factors for Common Designs
BayesFluxR Implementation of Bayesian Neural Networks
BayesForge Bayesian Inference using 'numpyro' and 'XLA'
BayesGP Efficient Implementation of Gaussian Process in
Bayesian Hierarchical Models
BayesGPfit Fast Bayesian Gaussian Process Regression
Fitting
BayesGWQS Bayesian Grouped Weighted Quantile Sum
Regression
BayesGmed Bayesian Causal Mediation Analysis using 'Stan'
BayesGrowth Estimate Fish Growth Using MCMC Analysis
BayesLCA Bayesian Latent Class Analysis
BayesLN Bayesian Inference for Log-Normal Data
BayesLogit PolyaGamma Sampling
BayesMFSurv Bayesian Misclassified-Failure Survival Model
BayesMallows Bayesian Preference Learning with the Mallows
Rank Model
BayesMallowsSMC2 Nested Sequential Monte Carlo for the Bayesian
Mallows Model
BayesMixSurv Bayesian Mixture Survival Models using Additive
Mixture-of-Weibull Hazards, with Lasso
Shrinkage and Stratification
BayesMoFo Bayesian Mortality Forecasting
BayesMortalityPlus Bayesian Mortality Modelling
BayesMultMeta Bayesian Multivariate Meta-Analysis
BayesMultiMode Bayesian Mode Inference
BayesNSGP Bayesian Analysis of Non-Stationary Gaussian
Process Models
BayesNetBP Bayesian Network Belief Propagation
BayesPET Bayesian Prediction of Event Times for Blinded
Randomized Controlled Trials
BayesPIM Bayesian Prevalence-Incidence Mixture Model
BayesPPD Bayesian Power Prior Design
BayesPPDSurv Bayesian Power Prior Design for Survival Data
BayesPPR Bayesian Projection Pursuit Regression
BayesPieceHazSelect Variable Selection in a Hierarchical Bayesian
Model for a Hazard Function
BayesPocket Bayesian Causal Inference for Periodontal
Diseases in Longitudinal Studies
BayesPostEst Generate Postestimation Quantities for Bayesian
MCMC Estimation
BayesPower Sample Size and Power Calculation for Bayesian
Testing with Bayes Factor
BayesProject Fast Projection Direction for Multivariate
Changepoint Detection
BayesRS Bayes Factors for Hierarchical Linear Models
with Continuous Predictors
BayesRTMB Bayesian Inference Using 'RTMB'
BayesRegDTR Bayesian Regression for Dynamic Treatment
Regimes
BayesRep Bayesian Analysis of Replication Studies
BayesRepDesign Bayesian Design of Replication Studies
BayesS5 Bayesian Variable Selection Using Simplified
Shotgun Stochastic Search with Screening (S5)
BayesSIM Integrated Interface of Bayesian Single Index
Models using 'nimble'
BayesSUR Bayesian Seemingly Unrelated Regression Models
in High-Dimensional Settings
BayesSampling Bayes Linear Estimators for Finite Population
BayesSurvival Bayesian Survival Analysis for Right Censored
Data
BayesSurvive Bayesian Survival Models for High-Dimensional
Data
BayesTSM Bayesian Progressive Three State Model with
Censoring Due to Intervention
BayesTools Tools for Bayesian Analyses
BayesTree Bayesian Additive Regression Trees
BayesTreePrior Bayesian Tree Prior Simulation
BayesTwin Bayesian Analysis of Item-Level Twin Data
BayesVarSel Bayes Factors, Model Choice and Variable
Selection in Linear Models
BayesVolcano Creating Volcano Plots from Bayesian Model
Posteriors
BayesX R Utilities Accompanying the Software Package
BayesX
BayesXsrc Distribution of the 'BayesX' C++ Sources
BayesfMRI Spatial Bayesian Methods for Task Functional
MRI Studies
BayesianDEB Bayesian Dynamic Energy Budget Modelling
BayesianDisaggregation
Bayesian Methods for Economic Data
Disaggregation
BayesianFitForecast Bayesian Parameter Estimation and Forecasting
for Epidemiological Models
BayesianInference Bayesian Inference
BayesianLasso Bayesian Lasso Regression and Tools for the
Lasso Distribution
BayesianLaterality Predict Brain Asymmetry Based on Handedness and
Dichotic Listening
BayesianMCPMod Simulate, Evaluate, and Analyze Dose Finding
Trials with Bayesian MCPMod
BayesianMediationA Bayesian Mediation Analysis
BayesianNetwork Bayesian Network Modeling and Analysis
BayesianPlatformDesignTimeTrend
Simulate and Analyse Bayesian Platform Trial
with Time Trend
BayesianPower Sample Size and Power for Comparing Inequality
Constrained Hypotheses
BayesianQDM Bayesian Quantitative Decision-Making Framework
for Binary and Continuous Endpoints
BayesianReasoning Plot Positive and Negative Predictive Values
for Medical Tests
BayesianTools General-Purpose MCMC and SMC Samplers and Tools
for Bayesian Statistics
Bayesiangammareg Double Generalized Gamma Regression Models
Bayesiantreg Bayesian t Regression for Modeling Mean and
Scale Parameters
Bayesrel Bayesian Reliability Estimation
Bchron Age-Depth Radiocarbon Modelling
BeQut Bayesian Estimation for Quantile Regression
Mixed Models
BeSS Best Subset Selection in Linear, Logistic and
CoxPH Models
BeastJar JAR Dependency for MCMC Using 'BEAST'
BeeBDC Occurrence Data Cleaning
Benchmarking Benchmark and Frontier Analysis Using DEA and
SFA
BenfordTests Statistical Tests for Evaluating Conformity to
Benford's Law
Bergm Bayesian Exponential Random Graph Models
BerkeleyForestsAnalytics
Compute and Summarize Core Forest Metrics from
Field Data
Bernadette Bayesian Inference and Model Selection for
Stochastic Epidemics
Bessel Computations and Approximations for Bessel
Functions
Bestie Bayesian Estimation of Intervention Effects
BetaBit Mini Games from Adventures of Beta and Bit
BetaDanish The Beta-Danish Distribution for Lifetime Data
Analysis
BetaPASS Calculate Power and Sample Size with Beta
Regression
BetterReg Better Statistics for OLS and Binomial Logistic
Regression
BeviMed Bayesian Evaluation of Variant Involvement in
Mendelian Disease
BeyondBenford Compare the Goodness of Fit of Benford's and
Blondeau Da Silva's Digit Distributions to a
Given Dataset
Bhat General Likelihood Exploration
BiCausality Binary Causality Inference Framework
BiDAG Bayesian Inference for Directed Acyclic Graphs
BiDimRegression Calculates the Bidimensional Regression Between
Two 2D Configurations
BiObjClass Classification of Algorithms
BiTSLS Bidirectional Two-Stage Least Squares
Estimation
BiTrinA Binarization and Trinarization of
One-Dimensional Data
BiVariAn Bivariate Automatic Analysis
BiasCorrector A GUI to Correct Measurement Bias in DNA
Methylation Analyses
BiasedUrn Biased Urn Model Distributions
BibPlots Plot Functions for Use in Bibliometrics
BifactorIndicesCalculator
Bifactor Indices Calculator
BigDataPE Secure and Intuitive Access to 'BigDataPE'
'API' Datasets
BigDataStatMeth Scalable Statistical Computing with HDF5-Backed
Matrices
BigQuic Big Quadratic Inverse Covariance Estimation
BigVAR Dimension Reduction Methods for Multivariate
Time Series
BimodalIndex The Bimodality Index
BinGSD Calculate Boundaries and Conditional Power for
Single Arm Group Sequential Test with Binary
Endpoint
BinMat Processes Binary Data Obtained from Fragment
Analysis (Such as AFLPs, ISSRs, and RFLPs)
BinNonNor Data Generation with Binary and Continuous
Non-Normal Components
BinNor Simultaneous Generation of Multivariate Binary
and Normal Variates
BinOrdNonNor Concurrent Generation of Binary, Ordinal and
Continuous Data
BinSegBstrap Piecewise Smooth Regression by Bootstrapped
Binary Segmentation
Binarize Binarization of One-Dimensional Data
BinaryDosage Creates, Merges, and Reads Binary Dosage Files
BinaryEMVS Variable Selection for Binary Data Using the EM
Algorithm
BinaryEPPM Mean and Scale-Factor Modeling of Under- And
Over-Dispersed Binary Data
BinaryReplicates Dealing with Binary Replicates
BinarybalancedCut Threshold Cut Point of Probability for a Binary
Classifier Model
BioCro Modular Crop Growth Simulations
BioGSP Biological Graph Signal Processing for Spatial
Data Analysis
BioIndex Biological Indicators and Indices for MEDITS
Survey Data
BioInsight Filter and Plot RNA Biotypes
BioM2 Biologically Explainable Machine Learning
Framework
BioMoR Bioinformatics Modeling with Recursion and
Autoencoder-Based Ensemble
BioMonTools Biomonitoring and Bioassessment Calculations
BioNet Routines for the functional analysis of
biological networks
BioPET Biomarker Prognostic Enrichment Tool
BioPETsurv Biomarker Prognostic Enrichment Tool for
Time-to-Event Trial
BioPred An R Package for Biomarkers Analysis in
Precision Medicine
BioProbability Probability in Biostatistics
BioRssay Analyze Bioassays and Probit Graphs
BioStatR Initiation à La Statistique Avec R
BioTIMEr Tools to Use and Explore the 'BioTIME' Database
BioThermR Standardized Processing and Analysis of Thermal
Imaging Data in Animal Studies
BioTrajectory Image Processing Tools for Barnes Maze
Experiments
BioUtils Biological Data Analysis and Visualization
BioVenn Create Area-Proportional Venn Diagrams from
Biological Lists
BioVizSeq Visualizing the Elements Within Bio-Sequences
BioWorldR A Curated Collection of Biodiversity and
Species Datasets and Utilities
Biobase Biobase: Base functions for Bioconductor
BiocBaseUtils Utility and internal functions for Bioconductor
packages
BiocCheck Bioconductor-specific package checks
BiocFileCache Manage Files Across Sessions
BiocGenerics S4 generic functions used in Bioconductor
BiocIO Standard Input and Output for Bioconductor
Packages
BiocManager Access the Bioconductor Project Package
Repository
BiocNeighbors Nearest Neighbor Detection for Bioconductor
Packages
BiocParallel Bioconductor facilities for parallel evaluation
BiocSingular Singular Value Decomposition for Bioconductor
Packages
BiocStyle Standard styles for vignettes and other
Bioconductor documents
BiocVersion Set the appropriate version of Bioconductor
packages
Biodem Biodemography Functions
BiodiversityR Package for Community Ecology and Suitability
Analysis
Bioi Biological Image Analysis
Bios2cor From Biological Sequences and Simulations to
Correlation Analysis
BiostatsUHNplus Nested Data Summary, Adverse Events and REDCap
Biostrings Efficient manipulation of biological strings
BipartiteModularityMaximization
Partition Bipartite Network into
Non-Overlapping Biclusters by Optimizing
Bipartite Modularity
BiplotML Logistic Biplot Estimation Using Machine
Learning Algorithms
BivGeo Basu-Dhar Bivariate Geometric Distribution
BivLaplaceRL Bivariate Laplace Transforms, Stochastic
Orders, and Entropy Measures in Reliability
BivRec Bivariate Alternating Recurrent Event Data
Analysis
BivRegBLS Tolerance Interval and EIV Regression - Method
Comparison Studies
BivUnifBin Generation of Bivariate Uniform Data and Its
Relation to Bivariate Binary Data
Bivariate.Pareto Bivariate Pareto Models
BlakerCI Blaker's Binomial and Poisson Confidence Limits
BlandAltmanLeh Plots (Slightly Extended) Bland-Altman Plots
BlanketStatsments Build and Compare Statistical Models
Blend Robust Bayesian Longitudinal Regularized
Semiparametric Mixed Models
Blendstat Joint Analysis of Experiments with Mixtures and
Random Effects
BlockCov Estimation of Large Block Covariance Matrices
BlockMissingData Integrating Multi-Source Block-Wise Missing
Data in Model Selection
BlockmodelingGUI GUI for the Generalised Blockmodeling of Valued
Networks
BlockwiseRankTest Block-Wise Rank in Similarity Graph Edge-Count
Two-Sample Test (BRISE)
BlueCarbon Estimation of Organic Carbon Stocks and
Sequestration Rates from Soil Core Data
BlythStillCasellaCI Blyth-Still-Casella Exact Binomial Confidence
Intervals
BoSSA A Bunch of Structure and Sequence Analysis
BoardGames Board Games and Tools for Building Board Games
Bolstad Functions for Elementary Bayesian Inference
Bolstad2 Bolstad Functions
BoltzMM Boltzmann Machines with MM Algorithms
BonEV An Improved Multiple Testing Procedure for
Controlling False Discovery Rates
BondValuation Fixed Coupon Bond Valuation Allowing for Odd
Coupon Periods and Various Day Count
Conventions
BoneDensityMapping Maps Bone Densities from CT Scans to Surface
Models
BoneProfileR Tools to Study Bone Compactness
BoolNet Construction, Simulation and Analysis of
Boolean Networks
Boom Bayesian Object Oriented Modeling
BoomSpikeSlab MCMC for Spike and Slab Regression
BoostMLR Boosting for Multivariate Longitudinal
Responses
BootMRMR Bootstrap-MRMR Technique for Informative Gene
Selection
BootPR Bootstrap Prediction Intervals and
Bias-Corrected Forecasting
BootWPTOS Test Stationarity using Bootstrap Wavelet
Packet Tests
BootstrapQTL Bootstrap cis-QTL Method that Corrects for the
Winner's Curse
BootstrapTests Bootstrap-Based Hypothesis Testing using
Different Resampling Schemes
Boptbd Bayesian Optimal Block Designs
Boruta Wrapper Algorithm for All Relevant Feature
Selection
BosonSampling Classical Boson Sampling
BoundEdgeworth Bound on the Error of the First-Order Edgeworth
Expansion
BoundIRT Fit Bounded Continuous Item Response Theory
Models to Data
BoundaryStats Boundary Overlap Statistics
BoutrosLab.plotting.general
Functions to Create Publication-Quality Plots
BradleyTerry2 Bradley-Terry Models
BrainCon Inference the Partial Correlations Based on
Time Series Data
BrainNetTest Hypothesis Testing for Populations of Brain
Networks
BranchGLM Efficient Best Subset Selection for GLMs via
Branch and Bound Algorithms
Branching Simulation and Estimation for Branching
Processes
BrazilCrime Accesses Brazilian Public Security Data from
SINESP Since 2015
BrazilDataAPI Access Brazilian Data via APIs and Curated
Datasets
BrazilMet Download and Processing of Automatic Weather
Stations (AWS) Data of INMET-Brazil
BreakPoints Identify Breakpoints in Series of Data
Brobdingnag Very Large Numbers in R
BrokenAdaptiveRidge Broken Adaptive Ridge Regression with Cyclops
Brq Bayesian Analysis of Quantile Regression Models
BsMD Bayes Screening and Model Discrimination
Buddle A Deep Learning for Statistical Classification
and Regression Analysis with Random Effects
BuildSys System for Building and Debugging C/C++ Dynamic
Libraries
BurStFin Burns Statistics Financial
BurStMisc Burns Statistics Miscellaneous
BusinessDuration Calculates Business Duration Between Two Dates
ButtR Download and Extract Data from the
'OzButterflies' Database
BuyseTest Generalized Pairwise Comparisons
Bvalue B-Value and Empirical Equivalence Bound
BwQuant Bandwidth Selectors for Local Linear Quantile
Regression
C19dNUTS Dataset of Regional COVID-19 Deaths per 100,000
Pop (NUTS)
C443 See a Forest for the Trees
C50 C5.0 Decision Trees and Rule-Based Models
CA3variants Three-Way Correspondence Analysis Variants
CADF Customer Analytics Data Formatting
CADFtest A Package to Perform Covariate Augmented
Dickey-Fuller Unit Root Tests
CAESAR.Suite CAESAR: a Cross-Technology and Cross-Resolution
Framework for Spatial Omics Annotation
CAGR Compound Annual Growth Rate
CAISEr Comparison of Algorithms with Iterative Sample
Size Estimation
CALANGO Comparative Analysis with Annotation-Based
Genomic Components
CALF Coarse Approximation Linear Function
CALIBERrfimpute Multiple Imputation Using MICE and Random
Forest
CANE Comprehensive Groups of Experiments Analysis
for Numerous Environments
CAOP.RAA.2024 Official Administrative Map of the Azores (CAOP
2024)
CARBayes Spatial Generalised Linear Mixed Models for
Areal Unit Data
CARBayesST Spatio-Temporal Generalised Linear Mixed Models
for Areal Unit Data
CARBayesdata Data Used in the Vignettes Accompanying the
CARBayes and CARBayesST Packages
CARM Covariate-Adjusted Adaptive Randomization via
Mahalanobis-Distance
CARME CAR-MM Modelling in Stan
CARMS Continuous Time Markov Rate Modeling for
Reliability Analysis
CARRoT Predicting Categorical and Continuous Outcomes
Using One in Ten Rule
CASCORE Covariate Assisted Spectral Clustering on
Ratios of Eigenvectors
CASIdata Datasets from Computer Age Statistical
Inference
CASMI 'CASMI'-Based Functions
CAST 'caret' Applications for Spatial-Temporal
Models
CATAcode Explore and Code Responses to
Check-All-that-Apply Survey Items
CATT The Cochran-Armitage Trend Test
CATTexact Computation of the p-Value for the Exact
Conditional Cochran-Armitage Trend Test
CAinterprTools Graphical Aid in Correspondence Analysis
Interpretation and Significance Testings
CAvariants Correspondence Analysis Variants
CB2 CRISPR Pooled Screen Analysis using
Beta-Binomial Test
CBAModel Stochastic 3D Structure Model for
Binder-Conductive Additive Phase
CBASSED50 Process CBASS-Derived PAM Data
CBCgrps Compare Baseline Characteristics Between Groups
CBPE Correlation-Based Penalized Estimators
CBPS Covariate Balancing Propensity Score
CBRT CBRT Data on Turkish Economy
CBSr Fits Cubic Bezier Spline Functions to
Intertemporal and Risky Choice Data
CBT Confidence Bound Target Algorithm
CBTF Caught by the Fuzz! - A Minimalistic Fuzz-Test
Runner
CBnetworkMA Contrast-Based Bayesian Network Meta Analysis
CC Control Charts
CCA Canonical Correlation Analysis
CCAMLRGIS Antarctic Spatial Data Manipulation
CCI Computational Test for Conditional Independence
CCM Correlation Classification Method
CCMMR Minimization of the Convex Clustering Loss
Function
CCMnet Congruence Class Models for Networks
CCP Significance Tests for Canonical Correlation
Analysis (CCA)
CCSRfind Convert ICD-10 Codes to CCSR Codes
CCWeights Perform Weighted Linear Regression for
Calibration Curve
CCd The Cauchy-Cacoullos (Discrete Cauchy)
Distribution
CDCPLACES Access the 'CDC PLACES' API
CDF Centroid Decision Forest for High-Dimensional
Classification
CDFt Downscaling and Bias Correction via
Non-Parametric CDF-Transform
CDGHMM Hidden Markov Models for Multivariate Panel
Data
CDM Cognitive Diagnosis Modeling
CDMConnector Connect to an OMOP Common Data Model
CDSE 'Copernicus Data Space Ecosystem' API Wrapper
CDSS Course-Dependent Skill Structures
CDSim Simulating Climate Data for Research and
Modelling
CDVI Cuddy-Della Valle Index for Capturing the
Instability in Time Series Data
CDatanet Econometrics of Network Data
CDsampling Constrained Sampling in Paid Research Studies
CEACT Cost-Effectiveness Analysis Toolkit for
Clinical Trials
CEC Cross-Entropy Clustering
CEDA CRISPR Screen and Gene Expression Differential
Analysis
CEDMr Capability-Ecological Developmental Model
(CEDM) Analysis
CEEMDANML CEEMDAN Decomposition Based Hybrid Machine
Learning Models
CEGO Combinatorial Efficient Global Optimization
CEOdata Datasets of the CEO (Centre d'Estudis d'Opinio)
for Opinion Polls in Catalonia
CERFIT Causal Effect Random Forest of Interaction
Trees
CEoptim Cross-Entropy R Package for Optimization
CFAcoop Colony Formation Assay: Taking into Account
Cellular Cooperation
CFC Cause-Specific Framework for Competing-Risk
Analysis
CFF Simple Similarity for User-Based Collaborative
Filtering Systems
CFM Analyzing Censored Factor Models
CFO CFO-Type Designs in Phase I/II Clinical Trials
CFilt Collaborative Filtering Models for
Recommendation Systems
CFtime Using CF-Compliant Calendars with Climate
Projection Data
CGE Computing General Equilibrium
CGGP Composite Grid Gaussian Processes
CGManalyzer Continuous Glucose Monitoring Data Analyzer
CGMissingDataR Impute Missing Glucose Values in CGM Data
CGNM Cluster Gauss-Newton Method
CGP Composite Gaussian Process Models
CGR Compound Growth Rate for Capturing the Growth
Rate Over the Period
CHAPGWAS CHAP-GWAS: Leveraging Chromosomal Haplotypes to
Improve Genome-Wide Association Studies
CHEMIST Causal Inference with High-Dimensional
Error-Prone Covariates and Misclassified
Treatments
CHMM Coupled Hidden Markov Models
CHNCapitalStock Compute Chinese Capital Stocks
CHNOSZ Thermodynamic Calculations and Diagrams for
Geochemistry
CHOIRBM Plots the CHOIR Body Map
CIAAWconsensus Isotope Ratio Meta-Analysis
CIARA Cluster Independent Algorithm for Rare Cell
Types Identification
CICA Clusterwise Independent Component Analysis
CICI Causal Inference with Continuous (Multiple Time
Point) Interventions
CIEE Estimating and Testing Direct Effects in
Directed Acyclic Graphs using Estimating
Equations
CIM Compositional Impact of Migration
CIMEHR Gaussian Clinically Informative Visiting and
Observation Processes in Electronic Health
Record (EHR) Data
CIMTx Causal Inference for Multiple Treatments with a
Binary Outcome
CINE Classification International Normalized of
Education
CINID Curculionidae INstar IDentification
CINNA Deciphering Central Informative Nodes in
Network Analysis
CINmetrics Calculate Chromosomal Instability Metrics
CIPerm Computationally-Efficient Confidence Intervals
for Mean Shift from Permutation Methods
CIS.DGLM Covariates, Interaction, and Selection for DGLM
CITAN CITation ANalysis Toolpack
CITMIC Estimation of Cell Infiltration Based on Cell
Crosstalk
CIfinder Estimate the Confidence Intervals for
Predictive Values
CIplot Functions to Plot Confidence Interval
CIpostSelect Confidence Interval Post-Selection of Variable
CJAMP Copula-Based Joint Analysis of Multiple
Phenotypes
CJIVE Canonical Joint and Individual Variation
Explained (CJIVE)
CKAT Composite Kernel Association Test for
Pharmacogenetics Studies
CKLRT Composite Kernel Machine Regression Based on
Likelihood Ratio Test
CKNNRLD Clustering-Based K-Nearest Neighbor Regression
for Longitudinal Data
CLA Critical Line Algorithm in Pure R
CLAST Exact Confidence Limits after a Sequential
Trial
CLIC The LIC for Distributed Cosine Regression
Analysis
CLME Constrained Inference for Linear Mixed Effects
Models
CLONETv2 Clonality Estimates in Tumor
CLRtools Diagnostic Tools for Logistic and Conditional
Logistic Regression
CLSIEP15 Clinical and Laboratory Standards Institute
(CLSI) EP15-A3 Calculations
CLUSTShiny Interactive Document for Working with Cluster
Analysis
CLVTools Tools for Customer Lifetime Value Estimation
CLimd Generating Rainfall Rasters from IMD NetCDF
Data
CMAPSS Commercial Modular Aero-Propulsion System
Simulation Data Set
CMF Collective Matrix Factorization
CMFsurrogate Calibrated Model Fusion Approach to Combine
Surrogate Markers
CMGFM Covariate-Augumented Generalized Factor Model
CMHNPA Cochran-Mantel-Haenszel and Nonparametric ANOVA
CMHSU Mental Health Status, Substance Use Status and
their Concurrent Status in North American
Healthcare Administrative Databases
CMIP6VisR Visualization and Analysis of Coupled Model
Intercomparison Project, Phase-6 (CMIP6)
Hydroclimatic Data
CMLS Constrained Multivariate Least Squares
CMMs Compositional Mediation Model
CMShiny Interactive Document for Working with Confusion
Matrix
CMTFtoolbox Create (Advanced) Coupled Matrix and Tensor
Factorization Models
CMapViz Representation Tool For Output Of Connectivity
Map (CMap) Analysis
CMatching Matching Algorithms for Causal Inference with
Clustered Data
CMplot Circle Manhattan Plot
CNAIM Common Network Asset Indices Methodology
(CNAIM)
CNID Get Basic Information from Chinese ID Number
CNLTreg Complex-Valued Wavelet Lifting for Signal
Denoising
CNLTtsa Complex-Valued Wavelet Lifting for Univariate
and Bivariate Time Series Analysis
CNPS Nonparametric Statistics
CNSigs Analysis of Copy Number Signatures
CNVScope A Versatile Toolkit for Copy Number Variation
Relationship Data Analysis and Visualization
CNVreg CNV-Profile Regression for Copy Number Variants
Association Analysis with Penalized Regression
CNprep Pre-Process DNA Copy Number (CN) Data for
Detection of CN Events
COAP High-Dimensional Covariate-Augmented
Overdispersed Poisson Factor Model
COINT Unit Root Tests with Structural Breaks and
Fully-Modified Estimators
COINr Composite Indicator Construction and Analysis
COLP Causal Discovery for Categorical Data with
Label Permutation
COMBAT A Combined Association Test for Genes using
Summary Statistics
COMBO Correcting Misclassified Binary Outcomes in
Association Studies
COMIX Coarsened Mixtures of Hierarchical Skew Kernels
COMMA Correcting Misclassified Mediation Analysis
COMPoissonReg Conway-Maxwell Poisson (COM-Poisson) Regression
CONCUR Copy Number Profile Curve-Based Association
Test
COR The COR for Optimal Subset Selection in
Distributed Estimation
CORE Cores of Recurrent Events
CORElearn Classification, Regression and Feature
Evaluation
CORPlot Cumulative Odds Ratio Plot
COST Copula-Based Semiparametric Models for
Spatio-Temporal Data
COUNT Functions, Data and Code for Count Data
COVID19 R Interface to COVID-19 Data Hub
COVIDIBGE Downloading, Reading and Analyzing PNAD COVID19
Microdata
COveR Clustering with Overlaps
CP Conditional Power Calculations
CPBayes Bayesian Meta Analysis for Studying
Cross-Phenotype Genetic Associations
CPC Implementation of Cluster-Polarization
Coefficient
CPCAT The Closure Principle Computational Approach
Test
CPE Concordance Probability Estimates in Survival
Analysis
CPGLIB Competing Proximal Gradients Library
CPMCGLM Correction of the P-Value after Multiple Coding
in Generalized Linear Models
CPNCoverageAnalysis Conceptual Properties Norming Studies as
Parameter Estimation
CPP Composition of Probabilistic Preferences (CPP)
CPoptim Convex Partition Optimisation
CPsurv Nonparametric Change Point Estimation for
Survival Data
CR2 Compute Cluster Robust Standard Errors with
Degrees of Freedom Adjustments
CRABS Congruent Rate Analyses in Birth-Death
Scenarios
CRANsearcher RStudio Addin for Searching Packages in CRAN
Database Based on Keywords
CRE Interpretable Discovery and Inference of
Heterogeneous Treatment Effects
CREAM Clustering of Genomic Regions Analysis Method
CREDS Calibrated Ratio Estimator under Double
Sampling Design
CRMetrics Cell Ranger Output Filtering and Metrics
Visualization
CRTConjoint Conditional Randomization Testing (CRT)
Approach for Conjoint Analysis
CRTSize Sample Size Estimation Functions for Cluster
Randomized Trials
CRTgeeDR Doubly Robust Inverse Probability Weighted
Augmented GEE Estimator
CRTspat Workflow for Cluster Randomised Trials with
Spillover
CRediTas Generate CRediT Author Statements
CSCNet Fitting and Tuning Regularized Cause-Specific
Cox Models with Elastic-Net Penalty
CSDownscale Statistical Downscaling of Climate Predictions
CSESA CRISPR-Based Salmonella Enterica Serotype
Analyzer
CSHShydRology Canadian Hydrological Analyses
CSIndicators Climate Services' Indicators Based on
Sub-Seasonal to Decadal Predictions
CSMES Cost-Sensitive Multi-Criteria Ensemble
Selection for Uncertain Cost Conditions
CSTE Covariate Specific Treatment Effect (CSTE)
Curve
CSTools Assessing Skill of Climate Forecasts on
Seasonal-to-Decadal Timescales
CSclone Bayesian Nonparametric Modeling in R
CSeQTL Cell Type-Specific Expression Quantitative
Trait Loci Mapping
CSeqpat Frequent Contiguous Sequential Pattern Mining
of Text
CSwR Companion to the Book "Computational Statistics
with R"
CTD A Method for 'Connecting The Dots' in Weighted
Graphs
CTE Constant Temperature Equivalent
CTNote CTN Outcomes, Treatments, and Endpoints
CTRing Density Profiles of Wood from CT Scan Images
CTShiny Interactive Document for Working with
Classification Tree Analysis
CTShiny2 Interactive Document for Working with
Classification Tree Analysis
CTT Classical Test Theory Functions
CTTShiny Classical Test Theory via Shiny
CTTvis Visualize Item Metrics of the Classical Test
Theory Framework
CTxCC Multivariate Normal Mean Monitoring Through
Critical-to-X Control Chart
CUB A Class of Mixture Models for Ordinal Data
CUFF Charles's Utility Function using Formula
CUMP Analyze Multivariate Phenotypes by Combining
Univariate Results
CUSUMdesign Compute Decision Interval and Average Run
Length for CUSUM Charts
CUtools Clinical Utility Tools to Analyze a Predictive
Model
CVD Color Vision Deficiencies
CVST Fast Cross-Validation via Sequential Testing
CVThresh Level-Dependent Cross-Validation Thresholding
CVXR Disciplined Convex Optimization
CVglasso Lasso Penalized Precision Matrix Estimation
CVrisk Compute Risk Scores for Cardiovascular Diseases
CWT Continuous Wavelet Transformation for
Spectroscopy
CaDENCE Conditional Density Estimation Network
Construction and Evaluation
CaMeA Causal Meta-Analysis for Aggregated Data
CaPO4Sim A Virtual Patient Simulator in the Context of
Calcium and Phosphate Homeostasis
Cairo R Graphics Device using Cairo Graphics Library
for Creating High-Quality Bitmap (PNG, JPEG,
TIFF), Vector (PDF, SVG, PostScript) and
Display (X11 and Win32) Output
CalSim The Calibration Simplex
CalcThemAll.PRM Calculate Pesticide Risk Metric (PRM) Values
from Multiple Pesticides...Calc Them All
CalibratR Mapping ML Scores to Calibrated Predictions
CalibrateSSB Weighting and Estimation for Panel Data with
Non-Response
CalibrationCurves Calibration Performance
CamelUp 'CamelUp' Board Game as a Teaching Aid for
Introductory Statistics
CancerEvolutionVisualization
Publication Quality Phylogenetic Tree Plots
CancerGram Prediction of Anticancer Peptides
Canek Batch Correction of Single Cell Transcriptome
Data
CanonicalFamilyExtra Extra Canonical Link Family Objects for
Generalized Linear Models
Capsule Comprehensive Reproducibility Framework for R
and Bioinformatics Analysis
CardiacDP Automated Cardiac Data Processing via ACF, GA &
Tracking Index
CardioCurveR Nonlinear Modeling of R-R Interval Dynamics
CardioDataSets A Comprehensive Collection of Cardiovascular
and Heart Disease Datasets
CareDensity Calculate the Care Density or Fragmented Care
Density Given a Patient-Sharing Network
CarletonStats Functions for Statistics Classes at Carleton
College
Carlson Carlson Elliptic Integrals and Incomplete
Elliptic Integrals
Cascade Selection, Reverse-Engineering and Prediction
in Cascade Networks
CascadeData Experimental Data of Cascade Experiments in
Genomics
CaseBasedReasoning Case Based Reasoning
CaseCohortCoxSurvival Case-Cohort Cox Survival Inference
CatDataAnalysis Datasets for Categorical Data Analysis by
Agresti
CatDyn Fishery Stock Assessment by Catch Dynamics
Models
CatEncoders Encoders for Categorical Variables
CatPredi Optimal Categorisation of Continuous Variables
in Prediction Models
CatReg Solution Paths for Linear and Logistic
Regression Models with Categorical Predictors,
with SCOPE Penalty
CatastRo Interface to the Spanish 'Catastro' Web
Services
Category Category Analysis
CausCor Calculate Correlations and Estimate Causality
CausalGPS Matching on Generalized Propensity Scores with
Continuous Exposures
CausalImpact Inferring Causal Effects using Bayesian
Structural Time-Series Models
CausalMBSTS MBSTS Models for Causal Inference and
Forecasting
CausalMetaR Causally Interpretable Meta-Analysis
CausalMixGPD Bayesian Nonparametric Conditional Density
Modeling in Causal Inference and Clustering
with a Heavy-Tail Extension
CausalModels Causal Inference Modeling for Estimation of
Causal Effects
CausalQueries Make, Update, and Query Binary Causal Models
CausalSpline Nonlinear Causal Dose-Response Estimation via
Splines
CautiousLearning Control Charts with Guaranteed In-Control
Performance and Cautious Parameters Learning
CePa Centrality-Based Pathway Enrichment
CeRNASeek Identification and Analysis of ceRNA Regulation
CellDEEP Cell DiffErential Expression by Pooling
('CellDEEP')
CellWindX Marker Gene Analysis and Visualization for
Single-Cell Data
CenBAR Broken Adaptive Ridge AFT Model with Censored
Data
CensMFM Finite Mixture of Multivariate Censored/Missing
Data
CensRegSMSN Censored Linear Regression Models under
Heavy‑tailed Distributions
CensSpatial Censored Spatial Models
Census2016 Data from the Australian Census 2016
CepReg A Cepstral Model for Covariate-Dependent Time
Series
CepalStatR Access to the 'CEPALSTAT API'
CerioliOutlierDetection
Outlier Detection Using the Iterated RMCD
Method of Cerioli (2010)
Certara.DarwinReporter
Data Visualization Utilities for 'pyDarwin'
Machine Learning Pharmacometric Model
Development
Certara.ModelResults Generate Diagnostics for Pharmacometric Models
Using 'shiny'
Certara.NLME8 Utilities for Certara's Nonlinear Mixed-Effects
Modeling Engine
Certara.R Easily Install Pharmacometric Packages and
Shiny Applications Developed by Certara
Certara.RDarwin Interface for 'pyDarwin' Machine Learning
Pharmacometric Model Development
Certara.RsNLME Pharmacometric Modeling
Certara.RsNLME.ModelBuilder
Pharmacometric Model Building Using 'shiny'
Certara.RsNLME.ModelExecutor
Execute Pharmacometric Models Using 'shiny'
Certara.VPCResults Generate Visual Predictive Checks (VPC) Using
'shiny'
Certara.Xpose.NLME Enhances 'xpose' Diagnostics for Pharmacometric
Models from 'Certara.RsNLME' and Phoenix NLME
ChIPseeker ChIPseeker for ChIP peak Annotation,
Comparison, and Visualization
ChainLadder Statistical Methods and Models for Claims
Reserving in General Insurance
ChangePointTaylor Identify Changes in Mean
ChangepointTesting Change Point Estimation for Clustered Signals
ChannelAttribution Markov Model for Online Multi-Channel
Attribution
ChannelAttributionApp Shiny Web Application for the Multichannel
Attribution Problem
Chaos01 0-1 Test for Chaos
ChaosGame Chaos Game
CharAnalysis Peak Detection and Fire History from
Sediment-Charcoal Records
Characterization Implement Descriptive Studies Using the Common
Data Model
ChauBoxplot Chauvenet-Type Boxplot
CheckDigit Calculate and Verify Check Digits
ChemmineR Cheminformatics Toolkit for R
ChemoSpec Exploratory Chemometrics for Spectroscopy
ChemoSpec2D Exploratory Chemometrics for 2D Spectroscopy
ChemoSpecUtils Functions Supporting Packages ChemoSpec and
ChemoSpec2D
ChernoffDist Chernoff's Distribution
ChessGmooG FIDE Chess Players Ratings for 2015 and 2020
ChestVolume Estimate the Chest Volume with Markers Data
ChileDataAPI Access Chilean Data via APIs and Curated
Datasets
ChillModels Processing Chill and Heat Models for Temperate
Fruit Trees
ChinAPIs Access Chinese Data via Public APIs and Curated
Datasets
ChineseNames Chinese Name Database 1930-2008
ChoiceModelR Choice Modeling in R
CholWishart Cholesky Decomposition of the Wishart
Distribution
CimpleG A Method to Identify Single CpG Sites for
Classification and Deconvolution
CircMLE Maximum Likelihood Analysis of Circular Data
CircNNTSR Statistical Analysis of Circular Data using
Nonnegative Trigonometric Sums (NNTS) Models
CircNNTSRSymmetric Circular Data using Symmetric NNTS Models
CircNNTSRaxial Axial Data using NNTS Models
CircNNTSRmult Multivariate Circular Data using MNNTS Models
CircOutlier Detection of Outliers in Circular-Circular
Regression
CircStats Circular Statistics, from "Topics in Circular
Statistics" (2001)
CircaCP Sleep and Circadian Metrics Estimation from
Actigraphy Data
CirceR Construct Cohort Inclusion and Restriction
Criteria Expressions
CirclesIntersections Algorithm for Computation of the Intersection
Areas of N Circles
CircularBoxplots Grouped Boxplots for Circular Data
CircularDDM Circular Drift-Diffusion Model
CircularRegression Circular Regression Models
CircularSilhouette Fast Silhouette on Circular or Linear Data
Clusters
CiteSource Data-Driven Search Strategy Development and
Evidence Synthesis Reporting
Ckmeans.1d.dp Optimal, Fast, and Reproducible Univariate
Clustering
Claddis Measuring Morphological Diversity and
Evolutionary Tempo
ClaimsProblems Analysis of Conflicting Claims
ClamR Time Series Modeling for Climate Change Proxies
ClassComparison Classes and Methods for "Class Comparison"
Problems on Microarrays
ClassDiscovery Classes and Methods for "Class Discovery" with
Microarrays or Proteomics
ClassificationEnsembles
Automatically Builds 12 Classification Models
(6 Individual and 6 Ensembles of Models) from
Classification Data
ClassifyITS Fungal Assignment Pipeline
CleanBSequences Curing of Biological Sequences
Cleanet Automated Doublet Detection and Classification
for Cytometry Data
CleaningValidation Cleaning Validation Functions for
Pharmaceutical Cleaning Process
ClickClust Model-Based Clustering of Categorical Sequences
ClickHouseHTTP A Simple HTTP Database Interface to
'ClickHouse'
CliftLRD Complex-Valued Wavelet Lifting Estimators of
the Hurst Exponent for Irregularly Sampled Time
Series
ClimClass Climate Classification According to Several
Indices
ClimInd Climate Indices
ClimMobTools API Client for the 'ClimMob' Platform
ClimProjDiags Set of Tools to Compute Various Climate Indices
ClimaRep Estimating Climate Representativeness
ClinSigMeasures Clinical Significance Measures
ClinTrialPredict Predicting and Simulating Clinical Trial with
Time-to-Event Endpoint
ClinicalTrialSummary Summary Measures for Clinical Trials with
Survival Outcomes
ClinicalUtilityRecal Recalibration Methods for Improved Clinical
Utility of Risk Scores
CliquePercolation Clique Percolation for Networks
CloneSeeker Seeking and Finding Clones in Copy Number and
Sequencing Data
CluMP Clustering of Micro Panel Data
ClueR Cluster Evaluation
ClusBoot Bootstrap a Clustering Solution to Establish
the Stability of the Clusters
ClusPred Simultaneous Semi-Parametric Estimation of
Clustering and Regression
ClusROC ROC Analysis in Three-Class Classification
Problems for Clustered Data
ClusTCR2 Identifying Similar T Cell Receptor
Hyper-Variable Sequences with 'ClusTCR2'
ClusTorus Prediction and Clustering on the Torus by
Conformal Prediction
ClussCluster Simultaneous Detection of Clusters and
Cluster-Specific Genes in High-Throughput
Transcriptome Data
ClustAssess Tools for Assessing Clustering
ClustBlock Clustering of Datasets
ClustGeo Hierarchical Clustering with Spatial
Constraints
ClustImpute K-Means Clustering with Build-in Missing Data
Imputation
ClustMC Cluster-Based Multiple Comparisons
ClustOfVar Clustering of Variables
ClustVarLV Clustering of Variables Around Latent Variables
ClusterBootstrap Analyze Clustered Data using the Cluster
Bootstrap
ClusterR Gaussian Mixture Models, K-Means,
Mini-Batch-Kmeans, K-Medoids and Affinity
Propagation Clustering
ClusterRankTest Rank Tests for Clustered Data
ClusterStability Assessment of Stability of Individual Objects
or Clusters in Partitioning Solutions
ClusterVAR Fitting Latent Class Vector-Autoregressive
(VAR) Models
ClusteredMutations Location and Visualization of Clustered Somatic
Mutations
Clustering Techniques for Evaluating Clustering
CoClust A Copula-Based Clustering Algorithm
CoDaImpact Interpreting CoDa Regression Models
CoDaLoMic Compositional Models to Longitudinal Microbiome
Data
CoDiNA Co-Expression Differential Network Analysis
CoFM Copula Factor Models
CoImp Parametric and Nonparametric Copula-Based
Imputation Methods
CoMiRe Convex Mixture Regression
CoNI Correlation Guided Network Integration (CoNI)
CoRpower Power Calculations for Assessing Correlates of
Risk in Clinical Efficacy Trials
CoSMoS Complete Stochastic Modelling Solution
CoTiMA Continuous Time Meta-Analysis ('CoTiMA')
CoalescentPhylo Phylogenetics via Root Distances Method Under
the Coalescent
CoastlineFD Calculation of the Fractal Dimension of a
Coastline
CodataGS Genomic Prediction Using SNP Codata
CodeDepends Analysis of R Code for Reproducible Research
and Code Comprehension
CodelistGenerator Identify Relevant Clinical Codes and Evaluate
Their Use
CohortCharacteristics Summarise and Visualise Characteristics of
Patients in the OMOP CDM
CohortConstructor Build and Manipulate Study Cohorts Using a
Common Data Model
CohortContrast Enrichment Analysis of Clinically Relevant
Concepts in Common Data Model Cohort Data
CohortGenerator Cohort Generation for the OMOP Common Data
Model
CohortMethod Comparative Cohort Method with Large Scale
Propensity and Outcome Models
CohortPlat Simulation of Cohort Platform Trials for
Combination Treatments
CohortSurvival Estimate Survival from Common Data Model
Cohorts
CohortSymmetry Sequence Symmetry Analysis Using the
Observational Medical Outcomes Partnership
Common Data Model
CoinMinD Simultaneous Confidence Intervals for
Multinomial Proportions
Coinprofile Coincident Profile
ColOpenData Download Colombian Demographic, Climate and
Geospatial Data
CollocInfer Collocation Inference for Dynamic Systems
ColombiAPI Access Colombian Data via APIs and Curated
Datasets
ColorNameR Give Colors a Name
Colossus "Risk Model Regression and Analysis with
Complex Non-Linear Models"
ComBatFamQC Comprehensive Batch Effect Diagnostics and
Harmonization
ComICS Computational Methods for Immune Cell-Type
Subsets
ComRiskModel Fitting of Complementary Risk Models
CombinS Construction Methods for Series of PBIB Designs
via Combinatory Method S
CombinePortfolio Estimation of Optimal Portfolio Weights by
Combining Simple Portfolio Strategies
CommEcol Community Ecology Analyses
CommKern Network-Based Communities and Kernel Machine
Methods
CommonDataModel OMOP CDM DDL and Documentation Generator
CommonJavaJars Useful Libraries for Building a Java Based GUI
under R
CommonMean.Copula Common Mean Vector under Copula Models
Comp2ROC Compare Two ROC Curves that Intersect
CompAREdesign Statistical Functions for the Design of Studies
with Composite Endpoints
CompClassMetrics Classification Measures when Subclasses are
Involved
CompDist Multisection Composite Distributions
CompExpDes Designs for Computer Experimentations
CompGR Complete Annual Growth Rate Generator
CompModels Pseudo Computer Models for Optimization
CompPareto Discrete Composite Distributions with Pareto
Tails
CompQuadForm Distribution Function of Quadratic Forms in
Normal Variables
CompR Paired Comparison Data Analysis
CompareCausalNetworks Interface to Diverse Estimation Methods of
Causal Networks
CompareMultipleModels Finding the Best Model Using Eight Metrics
Values
CompareTests Correct for Verification Bias in Diagnostic
Accuracy & Agreement
ComparisonSurv Comparison of Survival Curves Between Two
Groups
Compind Composite Indicators Functions
ComplexHeatmap Make Complex Heatmaps
ComplexUpset Create Complex UpSet Plots Using 'ggplot2'
Components
CompositeReliability Determine the Composite Reliability of a
Naturalistic, Unbalanced Dataset
Compositional Compositional Data Analysis
CompositionalClust Clustering with Compositional Data
CompositionalHDDA High Dimensional Discriminant Analysis with
Compositional Data
CompositionalML Machine Learning with Compositional Data
CompositionalNAimp Missing Value Imputation with Compositional
Data
CompositionalRF Multivariate Random Forest with Compositional
Responses
CompositionalSR Spatial Regression Models with Compositional
Data
CompoundDb Creating and Using (Chemical) Compound
Annotation Databases
CompoundEvents Statistical Modeling of Compound Events
ComradesM The Comrades Marathon 1921 to 2019
ConFluxPro Soil Gas Analysis and Flux Modeling
ConNEcT Contingency Measure-Based Networks for Binary
Time Series
ConSciR Tools for Conservation Science
ConSpline Partial Linear Least-Squares Regression using
Constrained Splines
ConconiAnaerobicThresholdTest
Conconi Estimate of Anaerobic Threshold from a
TCX File
ConcordanceTest An Alternative to the Kruskal-Wallis Based on
the Kendall Tau Distance
CondCopulas Estimation and Inference for Conditional Copula
Models
CondMVT Conditional Multivariate t Distribution,
Expectation Maximization Algorithm, and Its
Stochastic Variants
CondiS Censored Data Imputation for Direct Modeling
ConfMatrix Confusion Matrix
ConfidenceEllipse Computation of 2D and 3D Elliptical Joint
Confidence Regions
ConfigParser Package to Parse an INI File, Including
Variable Interpolation
ConformalSmallest Efficient Tuning-Free Conformal Prediction
ConfusionTableR Confusion Matrix Toolset
CongressData A Functional Tool for 'CongressData'
CongreveLamsdell2016 Distance Metrics for Trees Generated by
Congreve and Lamsdell
Conigrave Flexible Tools for Multiple Imputation
ConjointChecks Implementation of a Method to Check the
Cancellation Axioms of Additive Conjoint
Measurement
ConnMatTools Tools for Working with Connectivity Data
ConnectednessApproach Connectedness Approach
Connection Measures of Independence and Connection Without
Linear Models
ConsRank Compute the Median Ranking(s) According to the
Kemeny's Axiomatic Approach
ConsRankClass Classification and Clustering of Preference
Rankings
ConsReg Fits Regression & ARMA Models Subject to
Constraints to the Coefficient
ConsensusClusterPlus ConsensusClusterPlus
ConsensusClustering Consensus Clustering
ConsensusOPLS Consensus OPLS for Multi-Block Data Fusion
ContRespPP Predictive Probability for a Continuous
Response with an ANOVA Structure
ContaminatedMixt Clustering and Classification with the
Contaminated Normal
ContourFunctions Create Contour Plots from Data or a Function
ConvergenceClubs Finding Convergence Clubs
ConvergenceConcepts Seeing Convergence Concepts in Action
ConversationAlign Process Text and Compute Linguistic Alignment
in Conversation Transcripts
ConvertPar Estimating IRT Parameters via Machine Learning
Algorithms
Convolutioner Convolution of Data
CooRTweet Coordinated Networks Detection on Social Media
CooccurrenceAffinity Affinity in Co-Occurrence Data
CoopGame Important Concepts of Cooperative Game Theory
CoordinateCleaner Automated Cleaning of Occurrence Records from
Biological Collections
CopCTS Copula-Based Semiparametric Analysis for Time
Series Data with Detection Limits
CopernicusClimate Search Download and Handle Data from Copernicus
Climate Data Service
CopernicusDEM Copernicus Digital Elevation Models
CopernicusDataspace Search Download and Handle Data from the
Copernicus Data Space Ecosystem
CopernicusMarine Search Download and Handle Data from Copernicus
Marine Service Information
Copula.Markov Copula-Based Estimation and Statistical Process
Control for Serially Correlated Time Series
Copula.Markov.survival
Copula Markov Model with Dependent Censoring
Copula.surv Analysis of Bivariate Survival Data Based on
Copulas
CopulaCenR Copula-Based Regression Models for Multivariate
Censored Data
CopulaGAMM Copula-Based Mixed Regression Models
CopulaInference Estimation and Goodness-of-Fit of Copula-Based
Models with Arbitrary Distributions
CopulaREMADA Copula Mixed Models for Multivariate
Meta-Analysis of Diagnostic Test Accuracy
Studies
CopulaSCR Analysis of Semi-Competing Risks Data Using
Copula-Based Models
CorMID Correct Mass Isotopologue Distribution Vectors
CoreMicrobiomeR Identification of Core Microbiome
CorrBin Nonparametrics with Clustered Binary and
Multinomial Data
CorrMixed Estimate Correlations Between Repeatedly
Measured Endpoints (E.g., Reliability) Based on
Linear Mixed-Effects Models
CorrToolBox Modeling Correlational Magnitude
Transformations in Discretization Contexts
CorrectOverloadedPeaks
Correct Overloaded Peaks from GC-APCI-MS Data
CorrectedFDR Correcting False Discovery Rates
Correlplot A Collection of Functions for Graphing
Correlation Matrices
CortSineScore Compute Cortisol Sine Score (CSS) for Diurnal
Cortisol Analysis
Counterfactual Estimation and Inference Methods for
Counterfactual Analysis
Counternull Randomization-Based Inference
Countr Flexible Univariate Count Models Based on
Renewal Processes
CountsEPPM Mean and Variance Modeling of Count Data
CovCorTest Statistical Tests for Covariance and
Correlation Matrices and their Structures
CovEsts Nonparametric Estimators for Covariance
Functions
CovSel Model-Free Covariate Selection
CovTools Statistical Tools for Covariance Analysis
CovidMutations Mutation Analysis Toolkit for COVID-19
(Coronavirus Disease 2019)
CoxAIPW Doubly Robust Inference for Cox Marginal
Structural Model with Informative Censoring
CoxBcv Bias-Corrected Sandwich Variance Estimators for
Marginal Cox Analysis of Cluster Randomized
Trials
CoxBoost Cox Models by Likelihood Based Boosting for a
Single Survival Endpoint or Competing Risks
CoxICPen Variable Selection for Cox's Model with
Interval-Censored Data
CoxLikelihood Robust Likelihood Ratio Test and Confidence
Intervals for the Cox Model
CoxMK A Model-X Knockoff Method for Genome-Wide
Survival Association Analysis
CoxPlus Cox Regression (Proportional Hazards Model)
with Multiple Causes and Mixed Effects
Coxmos Cox MultiBlock Survival
CpGFilter CpG Filtering Method Based on Intra-Class
Correlation Coefficients
CpGassoc Association Between Methylation and a Phenotype
of Interest
CpmERCCutoff Calculation of Log2 Counts per Million Cutoff
from ERCC Controls
CptNonPar Nonparametric Change Point Detection for
Multivariate Time Series
CreditRisk Evaluation of Credit Risk with Structural and
Reduced Form Models
Cronbach Cronbach's Alpha
CropBreeding Stability Analysis in Crop Breeding
CropScapeR Access Cropland Data Layer Data via the
'CropScape' Web Service
CropWaterBalance Climate Water Balance for Irrigation Purposes
CrossCarry Analysis of Data from a Crossover Design with
GEE
CrossClustering A Partial Clustering Algorithm
CrossExpression Cross-Expression Analysis of Spatial
Transcriptomics Data
CrossValidate Classes and Methods for Cross Validation of
"Class Prediction" Algorithms
Crossover Analysis and Search of Crossover Designs
Crosstabs.Loglinear Cross Tabulation and Loglinear Analyses of
Categorical Data
CryptRndTest Statistical Tests for Cryptographic Randomness
CsChange Testing for Change in C-Statistic
Cubist Rule- And Instance-Based Regression Modeling
CureDepCens Dependent Censoring Regression Models with Cure
Fraction
CurricularAnalytics Exploring and Analyzing Academic Curricula
CurricularComplexity Toolkit for Analyzing Curricular Complexity
CurricularComplexityData
Data for Exploring Curricular Complexity
CustomDerivative Pricing Various Types of Custom Derivatives
CustomerScoringMetrics
Evaluation Metrics for Customer Scoring Models
Depending on Binary Classifiers
CustosAscensor Costs Allocation for the Installation of an
Elevator
CutpointsOEHR Optimal Equal-HR Method to Find Two Cutpoints
for U-Shaped Relationships in Cox Model
CvmortalityMult Cross-Validation for Multi-Population Mortality
Models
Cyclops Cyclic Coordinate Descent for Logistic, Poisson
and Survival Analysis
CytOpT Optimal Transport for Gating Transfer in
Cytometry Data with Domain Adaptation
CytoProfile Cytokine Profiling Analysis Tool
CytoSimplex Simplex Visualization of Cell Fate Similarity
in Single-Cell Data
CytobankAPI Cytobank API Wrapper for R
D3GB Interactive Genome Browser
D3mirt Descriptive 3D Multidimensional Item Response
Theory Modeling
D3partitionR Interactive Charts of Nested and Hierarchical
Data with 'D3.js'
D4TAlink.light GDP - Workflow Management
DA Discriminant Analysis for Evolutionary
Inference
DAAG Data Analysis and Graphics Data and Functions
DAAGbio Data Sets and Functions, for Demonstrations
with Expression Arrays and Gene Sequences
DAGassist Test Robustness with Directed Acyclic Graphs
DAIME Effects of Changing Deposition Rates
DAISIE Dynamical Assembly of Islands by Speciation,
Immigration and Extinction
DAISIEprep Extracts Phylogenetic Island Community Data
from Phylogenetic Trees
DAKS Data Analysis and Knowledge Spaces
DALEX moDel Agnostic Language for Exploration and
eXplanation
DALEXtra Extension for 'DALEX' Package
DALSM Nonparametric Double Additive Location-Scale
Model (DALSM)
DALY The DALY Calculator - Graphical User Interface
for Probabilistic DALY Calculation in R
DAMOCLES Dynamic Assembly Model of Colonization, Local
Extinction and Speciation
DANDELION Discovery of Candidate Disease Genes Using
Trans-Regulatory Effects
DAPAR Tools for the Differential Analysis of Proteins
Abundance with R
DATAstudio The Research Data Warehouse of Miguel de
Carvalho
DArand Differential Analysis with Random Reference
Genes
DBCVindex Calculates the Density-Based Clustering
Validation (DBCV) Index
DBHC Sequence Clustering with Discrete-Output HMMs
DBI R Database Interface
DBItest Testing DBI Backends
DBModelSelect Distribution-Based Model Selection
DBNMFrank Rank Selection for Non-Negative Matrix
Factorization
DBR Discrete Beta Regression
DBTC Dada-BLAST-Taxon Assign-Condense Metabarcode
Analysis
DBfit A Double Bootstrap Method for Analyzing Linear
Models with Autoregressive Errors
DBmaps A Metadata-Driven Framework for Streamlining
Database Joins
DCCA Detrended Fluctuation and Detrended
Cross-Correlation Analysis
DCEM Clustering Big Data using Expectation
Maximization Star (EM*) Algorithm
DCEmgmt DCE Data Reshaping and Processing
DCEtool Efficient and Accessible Discrete Choice
Experiments
DCG Data Cloud Geometry (DCG): Using Random Walks
to Find Community Structure in Social Network
Analysis
DCL Claims Reserving under the Double Chain Ladder
Model
DCLEAR Distance Based Cell Lineage Reconstruction
DCchoice Analyzing Dichotomous Choice Contingent
Valuation Data
DChaos Chaotic Time Series Analysis
DCluster Functions for the Detection of Spatial Clusters
of Diseases
DClusterm Model-Based Detection of Disease Clusters
DDD Diversity-Dependent Diversification
DDESONN A Deep Dynamic Experimental Self-Organizing
Neural Network Framework
DDHFm Variance Stabilization by Data-Driven Haar-Fisz
(for Microarrays)
DDIwR DDI with R
DDL Doubly Debiased Lasso (DDL)
DDM Death Registration Coverage Estimation
DDPM Data Sets for Discrete Probability Models
DDPstar Density Regression via Dirichlet Process
Mixtures of Normal Structured Additive
Regression Models
DDRTree Learning Principal Graphs with DDRTree
DEBBI Differential Evolution-Based Bayesian Inference
DECIDE DEComposition of Indirect and Direct Effects
DECIPHER Tools for curating, analyzing, and manipulating
biological sequences
DEET Differential Expression Enrichment Tool
DEEVD Density Estimation by Extreme Value
Distributions
DEHOGT Differentially Expressed Heterogeneous
Overdispersion Gene Test for Count Data
DELTD Kernel Density Estimation using Lifetime
Distributions
DEM The Distributed EM Algorithms in Multivariate
Gaussian Mixture Models
DENSaftertransform Estimating Density after Logarithmic or Power
Transformation of Data
DEPONS2R Read, Plot and Analyse Output from the DEPONS
Model
DER Income Polarization Index
DES Discrete Event Simulation
DESA Detecting Epidemics using School Absenteeism
DESNP Differentially Expressed Single Nucleotide
Polymorphism
DESeq2 Differential gene expression analysis based on
the negative binomial distribution
DET Representation of DET Curve with Confidence
Intervals
DEXiR 'DEXi' Library
DEmixR Fit Two-Component Normal and Lognormal Mixture
Models
DEoptim Global Optimization by Differential Evolution
DEoptimR Differential Evolution Optimization in Pure R
DEploid Deconvolute Mixed Genomes with Unknown
Proportions
DEploid.utils 'DEploid' Data Analysis and Results
Interpretation
DEplotting Visualization Tools for German Regional Data
DFA Detrended Fluctuation Analysis
DFA.CANCOR Linear Discriminant Function and Canonical
Correlation Analysis
DFBA Distribution-Free Bayesian Analysis
DFD Extract Drugs from Differential Expression Data
from LINCS Database
DFIT Differential Functioning of Items and Tests
DGEAR Differential Gene Expression Analysis with R
DGEobj Differential Gene Expression (DGE) Analysis
Results Data Object
DGEobj.utils Differential Gene Expression (DGE) Analysis
Utility Toolkit
DGLMExtPois Double Generalized Linear Models Extending
Poisson Regression
DGP4LCF Dependent Gaussian Processes for Longitudinal
Correlated Factors
DHARMa Residual Diagnostics for Hierarchical
(Multi-Level / Mixed) Regression Models
DHBins Hexmaps for NZ District Health Boards
DHS.rates Calculates Demographic Indicators
DHSr Create Large Scale Repeated Regression Summary
Statistics Dataset and Visualization Seamlessly
DICErClust Deep Significance Clustering for Clinical Risk
Stratification
DICOMread Reading and Saving DICOM Image Files
DIDHAD Difference-in-Differences in Heterogeneous
Adoption Designs with Quasi Untreated Groups
DIDmultiplegt Estimators DID with Multiple Groups and Periods
DIDmultiplegtDYN Estimation in Staggered First Switch Designs,
where Groups Experience their First Treatment
Change at Different Points in Time
DIETCOST Calculate the Cost and Environmental Impact of
a Ideal Diet
DIFM Dynamic ICAR Spatiotemporal Factor Models
DIFboost Detection of Differential Item Functioning
(DIF) in Rasch Models by Boosting Techniques
DIFlasso A Penalty Approach to Differential Item
Functioning in Rasch Models
DIFplus Multilevel Mantel-Haenszel Statistics for
Differential Item Functioning Detection
DIFshiny Differential Item Functioning via Shiny
Application
DIFtree Item Focussed Trees for the Identification of
Items in Differential Item Functioning
DIGSS Determination of Intervals Using Georeferenced
Survey Simulation
DIME Differential Identification using Mixture
Ensemble
DIMORA Diffusion Models R Analysis
DIRECT Bayesian Clustering of Multivariate Data Under
the Dirichlet-Process Prior
DIRMR Distributed Imputation for Random Effects
Models with Missing Responses
DIVINE Curated Datasets and Tools for Epidemiological
Data Analysis
DIZtools Lightweight Utilities for 'DIZ' R Package
Development
DIZutils Utilities for 'DIZ' R Package Development
DImodels Diversity-Interactions (DI) Models
DImodelsMulti Fit Multivariate Diversity-Interactions Models
with Repeated Measures
DImodelsVis Visualising and Interpreting Statistical Models
Fit to Compositional Data
DIscBIO A User-Friendly Pipeline for Biomarker
Discovery in Single-Cell Transcriptomics
DJL Distance Measure Based Judgment and Learning
DLASSO Implementation of Adaptive or Non-Adaptive
Differentiable Lasso and SCAD Penalties in
Linear Models
DLEGFM Distributed Loading Estimation for General
Factor Model
DLFM Distributed Laplace Factor Model
DLL Decorrelated Local Linear Estimator
DLMRMV Distributed Linear Regression Models with
Response Missing Variables
DLMtool Data-Limited Methods Toolkit
DLPCA The Distributed Local PCA Algorithm
DMCfun Diffusion Model of Conflict (DMC) in Reaction
Time Tasks
DMMF Daily Based Morgan-Morgan-Finney (DMMF) Soil
Erosion Model
DMRnet Delete or Merge Regressors Algorithms for
Linear and Logistic Model Selection and
High-Dimensional Data
DMtest Differential Methylation Tests (DMtest)
DNAcopy DNA Copy Number Data Analysis
DNAmf Diffusion Non-Additive Model with Tunable
Precision
DNAmixturesLite Statistical Inference for Mixed Traces of DNA
(Lite-Version)
DNAmotif DNA Sequence Motifs
DNAseqtest Generating and Testing DNA Sequences
DNAtools Tools for Analysing Forensic Genetic DNA Data
DNMF Discriminant Non-Negative Matrix Factorization
DNNSIM Single-Index Neural Network for Skewed
Heavy-Tailed Data
DNetFinder Estimating Differential Networks under
Semiparametric Gaussian Graphical Models
DOEM The Distributed Online Expectation Maximization
Algorithms to Solve Parameters of Poisson
Mixture Models
DOIcreator Append DOIs to References in Word Documents
DOPE Drug Ontology Parsing Engine
DOS Design of Observational Studies
DOS2 Design of Observational Studies, Companion to
the Second Edition
DOSE Disease Ontology Semantic and Enrichment
analysis
DOSPortfolio Dynamic Optimal Shrinkage Portfolio
DOVE Durability of Vaccine Efficacy
DOYPAColors Don't Overthink Your Palette of Colors
DOvalidation Kernel Hazard Estimation with Best One-Sided
and Double One-Sided Cross-Validation
DPCD Dirichlet Process Clustering with
Dissimilarities
DPI The Directed Prediction Index for Causal
Direction Inference from Observational Data
DPP Inference of Parameters of Normal Distributions
from a Mixture of Normals
DPQ Density, Probability, Quantile ('DPQ')
Computations
DPQBootstrap Dirichlet Quantile Bootstrap for Time Series
DPQmpfr DPQ (Density, Probability, Quantile)
Distribution Computations using MPFR
DPTM Dynamic Panel Multiple Threshold Model with
Fixed Effects
DPpack Differentially Private Statistical Analysis and
Machine Learning
DQA Data Quality Assessment Tools
DQAgui Graphical User Interface for Data Quality
Assessment
DQAstats Core Functions for Data Quality Assessment
DR.SC Joint Dimension Reduction and Spatial
Clustering
DRDID Doubly Robust Difference-in-Differences
Estimators
DREGAR Regularized Estimation of Dynamic Linear
Regression in the Presence of Autocorrelated
Residuals (DREGAR)
DRHotNet Differential Risk Hotspots in a Linear Network
DRIP Discontinuous Regression and Image Processing
DRPT Density Ratio Permutation Test
DRR Dimensionality Reduction via Regression
DRaWR Discriminative Random Walk with Restart
DRclass Consider Ambiguity in Probabilistic
Descriptions Using Density Ratio Classes
DRomics Dose Response for Omics
DRquality Quality Measurements for Dimensionality
Reduction
DRsurvCRT Doubly-Robust Estimation for Survival Outcomes
in Cluster-Randomized Trials
DRviaSPCN Drug Repurposing in Cancer via a Subpathway
Crosstalk Network
DSAIDE Dynamical Systems Approach to Infectious
Disease Epidemiology (Ecology/Evolution)
DSAIRM Dynamical Systems Approach to Immune Response
Modeling
DSAM Data Splitting Algorithms for Model
Developments
DSBayes Bayesian Subgroup Analysis in Clinical Trials
DSFM Distributed Skew Factor Model Estimation
Methods
DSI 'DataSHIELD' Interface
DSIR Data Science Infrastructure for Global Health
DSL Distributed Storage and List
DSLite 'DataSHIELD' Implementation on Local Datasets
DSMolgenisArmadillo 'DataSHIELD' Client for 'MOLGENIS Armadillo'
DSOpal 'DataSHIELD' Implementation for 'Opal'
DSSAT A Comprehensive R Interface for the DSSAT
Cropping Systems Model
DSWE Data Science for Wind Energy
DSjobtracker What Skills and Qualifications are Required for
Data Science Related Jobs?
DSpoty Get 'Spotify' API Multiple Information
DT A Wrapper of the JavaScript Library
'DataTables'
DT2 'DataTables' 2.x for R
DTAT Dose Titration Algorithm Tuning
DTAXG Diagnostic Test Assessment in the Absence of
Gold Standard
DTAplots Creates Plots Accompanying Bayesian Diagnostic
Test Accuracy Meta-Analyses
DTComPair Comparison of Binary Diagnostic Tests in a
Paired Study Design
DTDA Doubly Truncated Data Analysis
DTDA.cif Doubly Truncated Data Analysis, Cumulative
Incidence Functions
DTDA.ni Doubly Truncated Data Analysis, Non Iterative
DTEAssurance Assurance Methods for Clinical Trials with a
Delayed Treatment Effect
DTEBOP2 Bayesian Optimal Phase II Randomized Clinical
Trial Design with Delayed Outcomes
DTFM Distributed Online Covariance Matrix Tests for
Truncated Factor Model
DTMCPack Suite of Functions Related to Discrete-Time
Discrete-State Markov Chains
DTRKernSmooth Estimate and Make Inference About Optimal
Treatment Regimes via Smoothed Methods
DTRlearn2 Statistical Learning Methods for Optimizing
Dynamic Treatment Regimes
DTRreg DTR Estimation and Inference via G-Estimation,
Dynamic WOLS, Q-Learning, and Dynamic Weighted
Survival Modeling (DWSurv)
DTS Discrete Tempered Stable Distributions
DTSEA Drug Target Set Enrichment Analysis
DTSg A Class for Working with Time Series Data Based
on 'data.table' and 'R6' with Largely Optional
Reference Semantics
DTWBI Imputation of Time Series Based on Dynamic Time
Warping
DTWUMI Imputation of Multivariate Time Series Based on
Dynamic Time Warping
DTwrappers Simplified Data Analysis with Wrapper Functions
for the 'Data.Table' Package
DTwrappers2 Extensions of 'DTwrappers'
DUToolkit Visualizing and Quantifying Decision
Uncertainty
DVHmetrics Analyze Dose-Volume Histograms and Check
Constraints
DWDLargeR Fast Algorithms for Large Scale Generalized
Distance Weighted Discrimination
DWLS Gene Expression Deconvolution Using Dampened
Weighted Least Squares
DWaveNARDL Dual Wavelet Based NARDL Model
DWreg Parametric Regression for Discrete Response
DYM Did You Mean?
DamageDetective Detecting Damaged Cells in Single-Cell RNA
Sequencing Data
DamiaNN Neural Network Numerai
DandEFA Dandelion Plot for R-Mode Exploratory Factor
Analysis
DanielBiostatistics10th
Functions for Wayne W. Daniel's Biostatistics,
Tenth Edition
Dark The Analysis of Dark Adaptation Data
DarkDiv Estimating Dark Diversity and Site-Specific
Species Pools
DasGuptR Das Gupta Standardisation and Decomposition
Dasst Tools for Reading, Processing and Writing
'DSSAT' Files
DataClean Data Cleaning
DataDNA Data Frame Fingerprints and Lineage Figures
DataEditR An Interactive Editor for Viewing, Entering,
Filtering & Editing Data
DataExplorer Automate Data Exploration and Treatment
DataFusionGDM Machine Learning for Integrating Partially
Overlapped Genetic Datasets
DataGraph Export Data from 'R' to 'DataGraph'
DataLoader Import Multiple File Types
DataMetProcess Meteorological Data Processing
DataPackageR Construct Reproducible Analytic Data Sets as R
Packages
DataQualityDashboard Execute and View Data Quality Checks on OMOP
CDM Database
DataSetsUni A Collection of Univariate Data Sets
DataSetsVerse A Metapackage for Thematic and Domain-Specific
Datasets
DataSimilarity Quantifying Similarity of Datasets and
Multivariate Two- And k-Sample Testing
DataSpaceR Interface to 'the CAVD DataSpace'
DataSum Comprehensive Data Summarization for
Statistical Analysis
DataVisualizations Visualizations of High-Dimensional Data
DataViz Data Visualisation Using an HTML Page and
'D3.js'
DatabaseConnector Connecting to Various Database Platforms
DatabaseConnectorJars JAR Dependencies for the 'DatabaseConnector'
Package
DatabionicSwarm Swarm Intelligence for Self-Organized
Clustering
DatastreamDSWS2R Provides a Link Between the 'LSEG Datastream'
System and R
DatastreamR Datastream API
DateTimeRangePicker A Datetime Range Picker Widget for Usage in
'Shiny' Applications
Davies The Davies Quantile Function
Dcurvature Discrete Curvature with 'shiny' Explorer
DeBoinR Box-Plots and Outlier Detection for Probability
Density Functions
DeCAFS Detecting Changes in Autocorrelated and
Fluctuating Signals
DeRezende.Ferreira Zero Coupon Yield Curve Modelling
DeSciDe Tool for Unbiased Literature Searching and Gene
List Curation
DebiasInfer Efficient Inference on High-Dimensional Linear
Model with Missing Outcomes
DecisionDrift Detecting, Decomposing, and Stress-Testing
Temporal Change in Repeated Decision Systems
DeclareDesign Declare and Diagnose Research Designs
DecomposeR Empirical Mode Decomposition for
Cyclostratigraphy
DecorateR Fit and Deploy DECORATE Trees
DedooseR Monitoring and Analyzing Dedoose Qualitative
Data Exports
Deducer A Data Analysis GUI for R
DeductiveR Deductive Rational Method
DeepLearningCausal Causal Inference with Super Learner and Deep
Neural Networks
DegreeDayCalc Degree-Day Phenology Calculator ('shiny'
Application)
Delaporte Statistical Functions for the Delaporte
Distribution
DelayedArray A unified framework for working transparently
with on-disk and in-memory array-like datasets
DelayedEffect.Design Sample Size and Power Calculations using the
APPLE, SEPPLE, APPLE+ and SEPPLE+ Methods
DelayedMatrixStats Functions that Apply to Rows and Columns of
'DelayedMatrix' Objects
Delta Measure of Agreement Between Two Raters
DeltaMAN Delta Measurement of Agreement for Nominal Data
DemoDecomp Decompose Demographic Functions
DemoKin Estimate Population Kin Distribution
DemographicTable Create Demographic Table
DendSer Dendrogram Seriation: Ordering for
Visualisation
DendroSync A Set of Tools for Calculating Spatial
Synchrony Between Tree-Ring Chronologies
DensParcorr Dens-Based Method for Partial Correlation
Estimation in Large Scale Brain Networks
DepCens Dependent Censoring Regression Models
DepLogo Dependency Logo
DepMod Decision-Analytic Modelling for Depression
Prevention and Treatment
DepthProc Statistical Depth Functions for Multivariate
Analysis
Deriv Symbolic Differentiation
DescTools Tools for Descriptive Statistics
DescToolsAddIns Interactive Functions to be Used as Shortcuts
in 'RStudio'
DescribeDF Description of a Data Frame
DescribeDisplay An Interface to the 'DescribeDisplay' 'GGobi'
Plugin
DescriptiveRepresentationCalculator
Characterizing Observed and Expected
Representation
DescriptiveStats.OBeu Descriptive Statistics 'OpenBudgets.eu'
DescriptiveWH Descriptive Statistics
Design.parameters Parameters of the Experimental Designs
DesignLibrary Library of Research Designs
Desimml Distributed Estimation in Single-Index Models
with Multiple Links ('Desimml')
DetLifeInsurance Life Insurance Premium and Reserves Valuation
DetMCD Implementation of the DetMCD Algorithm (Robust
and Deterministic Estimation of Location and
Scatter)
DevTreatRules Develop Treatment Rules with Observational Data
Devore7 Data sets from Devore's "Prob and Stat for Eng
(7th ed)"
Dforest Decision Forest
DiDforBigData A Big Data Implementation of
Difference-in-Differences Estimation with
Staggered Treatment
DiNAMIC.Duo Finding Recurrent DNA Copy Number Alterations
and Differences
DiPALM Differential Pattern Analysis via Linear
Modeling
DiPhiSeq Robust Tests for Differential Dispersion and
Differential Expression in RNA-Sequencing Data
DiPs Directional Penalties for Optimal Matching in
Observational Studies
DiSCos Distributional Synthetic Controls Estimation
DiSSMod Fitting Sample Selection Models for Discrete
Response Variables
DiagrammeR Graph/Network Visualization
DiagrammeRsvg Export DiagrammeR Graphviz Graphs as SVG
DiallelAnalysisR Diallel Analysis with R
DiceDesign Designs of Computer Experiments
DiceEval Construction and Evaluation of Metamodels
DiceKriging Kriging Methods for Computer Experiments
DiceOptim Kriging-Based Optimization for Computer
Experiments
DiceView Methods for Visualization of Computer
Experiments Design and Surrogate
Dict R6 Based Key-Value Dictionary Implementation
DidacticBoost A Simple Implementation and Demonstration of
Gradient Boosting
DiffCorr Analyzing and Visualizing Differential
Correlation Networks in Biological Data
DiffNet Identifying Significant Node Scores using
Network Diffusion Algorithm
DiffXTables Pattern Analysis Across Contingency Tables
DigestiveDataSets A Curated Collection of Digestive System and
Gastrointestinal Disease Datasets
Dimodal Spacing Tests for Multi-Modality
DirStats Nonparametric Methods for Directional Data
Dire Linear Regressions with a Latent Outcome
Variable
DirectEffects Estimating Controlled Direct Effects for
Explaining Causal Findings
DirectStandardisation Adjusted Means and Proportions by Direct
Standardisation
DirectedClustering Directed Weighted Clustering Coefficient
Directional A Collection of Functions for Directional Data
Analysis
DirichletMultinomial Dirichlet-Multinomial Mixture Model Machine
Learning for Microbiome Data
DirichletRF "Dirichlet Random Forest"
DirichletReg Dirichlet Regression
DisImpact Calculates Disproportionate Impact When Binary
Success Data are Disaggregated by Subgroups
DisaggregateTS High-Dimensional Temporal Disaggregation
DisasterAlert Disaster Alert and Sentiment Analysis
DiscreteDLM Bayesian Distributed Lag Model Fitting for
Binary and Count Response Data
DiscreteDatasets Example Data Sets for Use with Discrete
Statistical Tests
DiscreteDists Discrete Statistical Distributions
DiscreteFDR FDR Based Multiple Testing Procedures with
Adaptation for Discrete Tests
DiscreteFWER FWER-Based Multiple Testing Procedures with
Adaptation for Discrete Tests
DiscreteGapStatistic An Extension of the Gap Statistic for
Ordinal/Categorical Data
DiscreteInverseWeibull
Discrete Inverse Weibull Distribution
DiscreteLaplace Discrete Laplace Distributions
DiscreteQvalue Improved q-Values for Discrete Uniform and
Homogeneous Tests
DiscreteTests Vectorised Computation of P-Values and Their
Supports for Several Discrete Statistical Tests
DiscreteWeibull Discrete Weibull Distributions (Type 1 and 3)
DisimForMixed Calculate Dissimilarity Matrix for Dataset with
Mixed Attributes
DistPlotter A Graphical User Interface for Plotting Common
Univariate Distributions
Distance Distance Sampling Detection Function and
Abundance Estimation
DistatisR DiSTATIS Three Way Metric Multidimensional
Scaling
Distributacalcul Probability Distribution Functions
DistributionIV Distributional Instrumental Variable (DIV)
Model
DistributionOptimization
Distribution Optimization
DistributionTest Powerful Goodness-of-Fit Tests Based on the
Likelihood Ratio
DistributionUtils Distribution Utilities
Ditwah Ditwah Storm Data and Tools for Storm
Monitoring and Early Warning November 2025, Sri
Lanka
DivE Diversity Estimator
DiversificationR Econometric Tools to Measure Portfolio
Diversification
DiversityStats Diversity Indices with Statistical Inference
DoE.MIParray Creation of Arrays by Mixed Integer Programming
DoE.base Full Factorials, Orthogonal Arrays and Base
Utilities for DoE Packages
DoE.wrapper Wrapper Package for Design of Experiments
Functionality
DockerParallel Using the Docker Container to Create R Workers
on Local or Cloud Platform
Docovt Distributed Online Covariance Matrix Tests
Dogoftest Distributed Online Goodness-of-Fit Tests for
Distributed Datasets
Domean Distributed Online Mean Tests
DominoDataR 'Domino Data R SDK'
DonutMap Donut Maps with 'sf', 'ggplot2', and 'leaflet'
DoseFinding Planning and Analyzing Dose Finding Experiments
DoubleCone Test Against Parametric Regression Function
DoubleExpSeq Differential Exon Usage Test for RNA-Seq Data
via Empirical Bayes Shrinkage of the Dispersion
Parameter
DoubleML Double Machine Learning in R
Dowd Functions Ported from 'MMR2' Toolbox Offered in
Kevin Dowd's Book Measuring Market Risk
DownBallotR Access Federal, State, and Local Election Data
Dpit Distribution Pitting
DrBats Data Representation: Bayesian Approach That's
Sparse
DrData Interactive Statistical Analysis and Machine
Learning Platform
DrImpute Imputing Dropout Events in Single-Cell
RNA-Sequencing Data
DrillR R Driver for Apache Drill
DrivePlotR Linked Plot Maps for Multivariate
High-Resolution Spatio-Temporal Data
DropletUtils Utilities for Handling Single-Cell Droplet Data
DrugExposureDiagnostics
Diagnostics for OMOP Common Data Model Drug
Records
DrugSim2DR Predict Drug Functional Similarity to Drug
Repurposing
DrugUtilisation Summarise Patient-Level Drug Utilisation in
Data Mapped to the OMOP Common Data Model
DstarM Analyze Two Choice Reaction Time Data with the
D*M Method
Dtableone Tabular Comparison of Paired Diagnostic Tests
Durga Effect Size Estimation and Visualisation
DyMEP Dynamic Multi Environment Phenology-Model
DySS Dynamic Screening Systems
DyadRatios Dyad Ratios Algorithm for Latent Variable
Estimation
DyadiCarma Dyadic Matrices and their Algebra using 'Rcpp'
and 'RcppArmadillo'
Dykstra Quadratic Programming using Cyclic Projections
DynClust Denoising and Clustering for Dynamical Image
Sequence (2D or 3D)+t
DynDoc Dynamic document tools
DynForest Random Forest with Multivariate Longitudinal
Predictors
DynNom Visualising Statistical Models using Dynamic
Nomograms
DynTxRegime Methods for Estimating Optimal Dynamic
Treatment Regimes
DynareR Bringing the Power of 'Dynare' to 'R', 'R
Markdown', and 'Quarto'
DysPIA Dysregulated Pathway Identification Analysis
DysPIAData Background and Pathway Data Used in 'DysPIA'
E2E Ensemble Learning Framework for Diagnostic and
Prognostic Modeling
EATME Exponentially Weighted Moving Average with
Adjustments to Measurement Error
EAVA Deterministic Verbal Autopsy Coding with Expert
Algorithm Verbal Autopsy
EBASE Estuarine Bayesian Single-Station Estimation
Method for Ecosystem Metabolism
EBCHS An Empirical Bayes Method for Chi-Squared Data
EBEN Empirical Bayesian Elastic Net
EBImage Image processing and analysis toolbox for R
EBMAforecast Estimate Ensemble Bayesian Model Averaging
Forecasts using Gibbs Sampling or EM-Algorithms
EBcoBART Co-Data Learning for Bayesian Additive
Regression Trees
EBrank Empirical Bayes Ranking
ECDFniche Empirical Cumulative Distribution Function
Niche Modeling Tools
ECG Center of Gravity Methods
ECGofTestDx A Goodness-of-Fit Test for Elliptical
Distributions with Diagnostic Capabilities
ECMLE Approximating Evidence via Bounded Harmonic
Means
ECOSolveR Embedded Conic Solver in R
ECOTOXr Download and Extract Data from US EPA's ECOTOX
Database
ECTSVR Cointegration Based Support Vector Regression
Model
ECTTDNN Cointegration Based Timedelay Neural Network
Model
ECharts2Shiny Embedding Interactive Charts Generated with
ECharts Library into Shiny Applications
ECoL Complexity Measures for Supervised Problems
EDCimport Import Data from EDC Software
EDISON Network Reconstruction and Changepoint
Detection
EDIutils An API Client for the Environmental Data
Initiative Repository
EDNE.EQ Implements the EDNE-Test for Equivalence
EDOIF Empirical Distribution Ordering Inference
Framework (EDOIF)
EDOtrans Euclidean Distance-Optimized Data
Transformation
EE.Data Objects for Predicting Energy Expenditure
EEAaq Handle Air Quality Data from the European
Environment Agency Data Portal
EEEA Explicit Exploration Strategy for Evolutionary
Algorithms
EEM Read and Preprocess Fluorescence
Excitation-Emission Matrix (EEM) Data
EEMDSVR Ensemble Empirical Mode Decomposition and Its
Variant Based Support Vector Regression Model
EEMDelm Ensemble Empirical Mode Decomposition and Its
Variant Based ELM Model
EEMDlstm EEMD Based LSTM Model for Time Series
Forecasting
EEML Ensemble Explainable Machine Learning Models
EFA.MRFA Dimensionality Assessment Using Minimum Rank
Factor Analysis
EFA.dimensions Exploratory Factor Analysis Functions for
Assessing Dimensionality
EFAfactors Determining the Number of Factors in
Exploratory Factor Analysis
EFAtools Fast and Flexible Implementations of
Exploratory Factor Analysis Tools
EFAutilities Utility Functions for Exploratory Factor
Analysis
EFDR Wavelet-Based Enhanced FDR for Detecting
Signals from Complete or Incomplete Spatially
Aggregated Data
EFM Elliptical Factor Models
EFSATools EFSA Ensemble of Data Collections Tools
EGAnet Exploratory Graph Analysis – a Framework for
Estimating the Number of Dimensions in
Multivariate Data using Network Psychometrics
EGM Intracardiac Electrograms
EGRET Exploration and Graphics for RivEr Trends
EGRETci Exploration and Graphics for RivEr Trends
Confidence Intervals
EGRNi Ensemble Gene Regulatory Network Inference
EHR Electronic Health Record (EHR) Data Processing
and Analysis Tool
EHRmuse Multi-Cohort Selection Bias Correction using
IPW and AIPW Methods
EHRtemporalVariability
Delineating Temporal Dataset Shifts in
Electronic Health Records
EIAapi Query Data from the 'EIA' API
EIEntropy Ecological Inference Applying Entropy
EIX Explain Interactions in 'XGBoost'
EKMCMC MCMC Procedures for Estimating Enzyme Kinetics
Constants
EL Two-Sample Empirical Likelihood
EL2Surv Empirical Likelihood (EL) for Comparing Two
Survival Functions
ELAplus Energy Landscape Analysis for Ecological
Communities
ELIC LIC for Distributed Elliptical Model
ELISAtools ELISA Data Analysis with Batch Correction
ELT Experience Life Tables
ELYP Empirical Likelihood Analysis for the Cox Model
and Yang-Prentice (2005) Model
ELmethodVar Empirical Likelihood Inference of Variance
Components in Linear Mixed-Effects Models
EMAR Empirical Model Assessment
EMAS Epigenome-Wide Mediation Analysis Study
EMC2 Bayesian Hierarchical Analysis of Cognitive
Models of Choice
EMCluster EM Algorithm for Model-Based Clustering of
Finite Mixture Gaussian Distribution
EMD Empirical Mode Decomposition and Hilbert
Spectral Analysis
EMDANNhybrid Empirical Mode Decomposition Based Artificial
Neural Network Model
EMDSVRhybrid Empirical Mode Decomposition Based Support
Vector Regression Model
EMGCR Fit a Mixture Cure Rate Model with Custom Link
Function
EMJMCMC Evolutionary Mode Jumping Markov Chain Monte
Carlo Expert Toolbox
EML Read and Write Ecological Metadata Language
Files
EMLI Computationally Efficient Maximum Likelihood
Identification of Linear Dynamical Systems
EMMAgeo End-Member Modelling of Grain-Size Data
EMMIXSSL Semi-Supervised Gaussian Mixture Model with a
Missing-Data Mechanism
EMMIXgene A Mixture Model-Based Approach to the
Clustering of Microarray Expression Data
EMMIXmfa Mixture Models with Component-Wise Factor
Analyzers
EMMLi A Maximum Likelihood Approach to the Analysis
of Modularity
EMMREML Fitting Mixed Models with Known Covariance
Structures
EMOTIONS Ensemble Models for Lactation Curves
EMP Expected Maximum Profit Classification
Performance Measure
EMSC Extended Multiplicative Signal Correction
EMSNM EM Algorithm for Sigmoid Normal Model
EMSS Some EM-Type Estimation Methods for the Heckman
Selection Model
EMSaov The Analysis of Variance with EMS
EMT Exact Multinomial Test: Goodness-of-Fit Test
for Discrete Multivariate Data
EMbC Expectation-Maximization Binary Clustering
EMgaussian Expectation-Maximization Algorithm for
Multivariate Normal (Gaussian) with Missing
Data
EMpeaksR Conducting the Peak Fitting Based on the EM
Algorithm
ENMTools Analysis of Niche Evolution using Niche and
Distribution Models
ENMeval Automated Tuning and Evaluations of Ecological
Niche Models
EPLSIM Partial Linear Single Index Models for
Environmental Mixture Analysis
EPT Ensemble Patch Transform, Visualization and
Decomposition
EPX Ensemble of Phalanxes
EQL Extended-Quasi-Likelihood-Function (EQL)
EQRN Extreme Quantile Regression Neural Networks for
Risk Forecasting
EQUALCompareImages Comparison of Images for Researchers Without
Coding Skills
EQUALPrognosis Analysing Prognostic Studies
EQUALSTATS Algorithm Driven Statistical Analysis for
Researchers without Coding Skills
EQUALencrypt Encryption and Decryption of Files and Data for
Researchers Without Coding Skills
EQUALrepeat Algorithm Driven Time Series Analysis for
Researchers without Coding Skills
EQUIVNONINF Testing for Equivalence and Noninferiority
ER Effect + Residual Modelling
ERDbuilder Entity Relationship Diagrams Builder
ERP Significance Analysis of Event-Related
Potentials Data
ERPM Exponential Random Partition Models
ERPeq Probabilistic Hazard Assessment
ERSA Exploratory Regression 'Shiny' App
ES Edge Selection
ESG A Package for Asset Projection
ETAS Modeling Earthquake Data Using 'ETAS' Model
ETASbootstrap Bootstrap Confidence Interval Estimation for
'ETAS' Model Parameters
ETC Equivalence to Control
ETDQualitizer Automated Eye Tracking Data Quality
Determination for Screen-Based Eye Trackers
ETLUtils Utility Functions to Execute Standard
Extract/Transform/Load Operations (using
Package 'ff') on Large Data
ETRep Analysis of Elliptical Tubes Under the Relative
Curvature Condition
EUfootball Football Match Data of European Leagues
EVI Epidemic Volatility Index as an Early-Warning
Tool
EValue Sensitivity Analyses for Unmeasured Confounding
and Other Biases in Observational Studies and
Meta-Analyses
EVchargcost Computes and Plot the Optimal Charging Strategy
for Electric Vehicles
EWGoF Goodness-of-Fit Tests for the Exponential and
Two-Parameter Weibull Distributions
EWOC.Comb Escalation with Overdose Control using 2 Drug
Combinations
EWS Early Warning System
EWSmethods Forecasting Tipping Points at the Community
Level
EXPAR Fitting of Exponential Autoregressive (EXPAR)
Model
EXPARMA Fitting of Exponential Autoregressive Moving
Average (EXPARMA) Model
EXRQ Extreme Regression of Quantiles
EZFragility Compute Neural Fragility for Ictal iEEG Time
Series
EZbakR Analyze and Integrate Any Type of Nucleotide
Recoding RNA-Seq Data
EZtune Tunes AdaBoost, Elastic Net, Support Vector
Machines, and Gradient Boosting Machines
Eagle Multiple Locus Association Mapping on a
Genome-Wide Scale
Ease Simulating Explicit Population Genetics Models
EasyABC Efficient Approximate Bayesian Computation
Sampling Schemes
EasyDescribe A Convenient Way of Descriptive Statistics
EasyMx Easy Model-Builder Functions for 'OpenMx'
EasyStat Automated Statistical Analysis, Visualization
and Multi-Format Narrative Reporting
EbayesThresh Empirical Bayes Thresholding and Related
Methods
Ecdat Data Sets for Econometrics
Ecfun Functions for 'Ecdat'
EcoCleanR Enhancing Data Quality of Biogeographic Ranges
with Application for Marine Invertebrates
EcoDiet Estimating a Diet Matrix from Biotracer and
Stomach Content Data
EcoEnsemble A General Framework for Combining Ecosystem
Models
EcoMetrics Econometrics Model Building
EcoNetGen Simulate and Sample from Ecological Interaction
Networks
EcoNiche Community Niche Position and Width Estimation
Tools
EcoTroph An Implementation of the EcoTroph Ecosystem
Modelling Approach
Ecohydmod Ecohydrological Modelling
EconAndProdEfficiency Economic and Production Efficiency
EconCausal Causal Analysis for Macroeconomic Time Series
(ECM-MARS, BSTS, Bayesian GLM-AR(1))
EconGeo Computing Key Indicators of the Spatial
Distribution of Economic Activities
EcotoneFinder Characterising and Locating Ecotones and
Communities
Ecume Equality of 2 (or k) Continuous Univariate and
Multivariate Distributions
EdSurvey Analysis of NCES Education Survey and
Assessment Data
EffectLiteR Average and Conditional Effects
EffectStars Visualization of Categorical Response Models
EffectStars2 Effect Stars
EffectTreat Prediction of Therapeutic Success
EfficientMaxEigenpair Efficient Initials for Computing the Maximal
Eigenpair
EgoCor Simple Presentation of Estimated Exponential
Semi-Variograms
EleChemr Electrochemical Reactions Simulation
ElectDecomp Decomposition of Seats-to-Votes Distortions
ElicitationWizard LLM-Based Bayesian Prior Elicitation Wizard
Elja Linear, Logistic and Generalized Linear Models
Regressions for the EnvWAS/EWAS Approach
ElliptCopulas Inference of Elliptical Distributions and
Copulas
EloChoice Preference Rating for Visual Stimuli Based on
Elo Ratings
EloOptimized Optimized Elo Rating Method for Obtaining
Dominance Ranks
EloRating Animal Dominance Hierarchies by Elo Rating
EmbedSOM Fast Embedding Guided by Self-Organizing Map
EmiR Evolutionary Minimizer for R
EmissV Tools for Create Emissions for Air Quality
Models
EmpiricalBrownsMethod Uses Brown's method to combine p-values from
dependent tests
EmpiricalCalibration Routines for Performing Empirical Calibration
of Observational Study Estimates
EmpiricalDynamics Empirical Discovery of Differential Equations
from Time Series Data
EnTraineR Enhanced Teaching Assistant (AI) for
Statistical Analysis
EncompassTest Direct Multi-Step Forecast Based Comparison of
Nested Models via an Encompassing Test
EnergyOnlineCPM Distribution Free Multivariate Control Chart
Based on Energy Test
EngrEcon Engineering Economics Analysis for Engineering
Projects Cost Analysis
EngrExpt Data sets from "Introductory Statistics for
Engineering Experimentation"
EnhancedVolcano Publication-ready volcano plots with enhanced
colouring and labeling
EnrichIntersect Enrichment Analysis and Intersecting Sankey
Diagram
EnsCat Clustering of Categorical Data
EntropicStatistics Functions Based on Entropic Statistics
EntropyEstimation Estimation of Entropy and Related Quantities
EnvCpt Detection of Structural Changes in Climate and
Environment Time Series
EnvNJ Whole Genome Phylogenies Using Sequence
Environments
EnvNicheR Niche Estimation
EnvStats Package for Environmental Statistics, Including
US EPA Guidance
EnviroPRA2 Environmental Probabilistic Risk Assessment
Tools
Epi Statistical Analysis in Epidemiology
EpiContactTrace Epidemiological Tool for Contact Tracing
EpiCurve Plot an Epidemic Curve
EpiDISH Epigenetic Dissection of
Intra-Sample-Heterogeneity
EpiDynamics Dynamic Models in Epidemiology
EpiEstim Estimate Time Varying Reproduction Numbers from
Epidemic Curves
EpiForsk Code Sharing at the Department of Epidemiology
Research at Statens Serum Institut
EpiILM Spatial and Network Based Individual Level
Models for Epidemics
EpiInvert Variational Techniques in Epidemiology
EpiLPS A Fast and Flexible Bayesian Tool for
Estimating Epidemiological Parameters
EpiModel Mathematical Modeling of Infectious Disease
Dynamics
EpiNova Flexible Extended State-Space Epidemiological
Models with Modern Inference
EpiPvr Estimating Plant Pathogen Epidemiology
Parameters from Laboratory Assays
EpiReport Epidemiological Report
EpiSemble Ensemble Based Machine Learning Approach for
Predicting Methylation States
EpiSignalDetection Signal Detection Analysis
EpiSimR A 'Shiny' App to Simulate the Dynamics of
Epidemic and Endemic Diseases Spread
EpiStandard Directly Standardise Rates by Age
EpiStats Tools for Epidemiologists
EpiTest Test for Gene x Gene Interactions in
Bi-Parental Populations
EpidigiR Digital Epidemiological Analysis and
Visualization Tools
EpistemicGameTheory Constructing an Epistemic Model for the Games
with Two Players
Epoch IEEG (Intracranial Electroencephalography)
Epoch Data Tools
Equalden.HD Testing the Equality of a High Dimensional Set
of Densities
EquiSurv Modeling, Confidence Intervals and Equivalence
of Survival Curves
EquiTrends Equivalence Testing for Pre-Trends in
Difference-in-Differences Designs
EraBrewer Color Palettes from the Album Covers of Each
Taylor Swift Era
ErlangC Solve Erlang-C Model
EstCRM Calibrating Parameters for the Samejima's
Continuous IRT Model
EstHTSeed Hydro Time Analysis of Seed Germination
EstemPMM Polynomial Maximization Method for Non-Gaussian
Regression
EstimDiagnostics Diagnostic Tools and Unit Tests for Statistical
Estimators
EstimateBreed Estimation of Environmental Variables and
Genetic Parameters
EstimateGroupNetwork Perform the Joint Graphical Lasso and Selects
Tuning Parameters
EstimationTools Maximum Likelihood Estimation for Probability
Functions from Data Sets
EthSEQ Ethnicity Annotation from Whole-Exome and
Targeted Sequencing Data
EuclideanSD An Euclidean View of Center and Spread
Euclimatch Euclidean Climatch Algorithm
Eunomia Standard Dataset Manager for Observational
Medical Outcomes Partnership Common Data Model
Sample Datasets
EvCombR Evidence Combination in R
Evacluster Evaluation Clustering Methods for Disease
Subtypes Diagnosis
EvalTest Tools for Evaluating Diagnostic Test
Performance
EvaluateCore Quality Evaluation of Core Collections
EvaluationMeasures Collection of Model Evaluation Measure
Functions
Evapotranspiration Modelling Actual, Potential and Reference Crop
Evapotranspiration
EventPredInCure Event Prediction Including Cured Population
EventWinRatios Event-Specific Win Ratios for Terminal and
Non-Terminal Events
EvidenceSynthesis Synthesizing Causal Evidence in a Distributed
Research Network
EviewsR A Seamless Integration of 'EViews' and R
EvoPhylo Pre- And Postprocessing of Morphological Data
from Relaxed Clock Bayesian Phylogenetics
EvolutionaryGames Important Concepts of Evolutionary Game Theory
Evomorph Evolutionary Morphometric Simulation
EwR Econometrics with R
ExGaussEstim Quantile Maximization Likelihood Estimation and
Bayesian Ex-Gaussian Estimation
ExNRuleEnsemble A k Nearest Neibour Ensemble Based on Extended
Neighbourhood Rule
ExPanDaR Explore Your Data Interactively
ExPosition Exploratory Analysis with the Singular Value
Decomposition
Exact Unconditional Exact Test
ExactCIdiff Inductive Confidence Intervals for the
Difference Between Two Proportions
ExactCIone Admissible Exact Intervals for One-Dimensional
Discrete Distributions
ExactCox Exact Test and Exact Confidence Interval for
the Cox Model
ExactMed Exact Mediation Analysis for Binary Outcomes
ExactMultinom Multinomial Goodness-of-Fit Tests
ExactVaRTest Exact Finite-Sample Value-at-Risk Back-Testing
ExamPAData Data Sets for Predictive Analytics Exam
ExceedanceTools Confidence/Credible Regions for Exceedance Sets
and Contour Lines
ExcelFunctionsR Imports Excel Functions to R
ExcessMass Excess Mass Calculation and Plots
ExclusionTable Creating Tables of Excluded Observations
ExhaustiveSearch A Fast and Scalable Exhaustive Feature
Selection Framework
ExpAnalysis3d Pacote Para Analise De Experimentos Com
Graficos De Superficie Resposta
ExpBites Analyzing Human Exposure to Mosquito Biting
ExpDE Modular Differential Evolution for
Experimenting with Operators
ExpDes Experimental Designs Package
ExpGenetic Non-Additive Expression Analysis of Hybrid
Offspring
ExpRep Experiment Repetitions
ExperimentHub Client to access ExperimentHub resources
ExpertChoice Design of Discrete Choice and Conjoint Analysis
ExplodeLayout Calculate Exploded Coordinates Based on
Original Node Coordinates and Node Clustering
Membership
ExploreTheData A Set of Tools for Exploratory Data Analysis
ExposR Models Topographic Exposure to Hurricane Winds
ExpressionCellNet Network-Based Analysis of Gene Expression
Perturbations
ExtDist Extending the Range of Functions for
Probability Distributions
ExtMallows An Extended Mallows Model and Its Hierarchical
Version for Ranked Data Aggregation
ExtendedABSurvTDC Survival Analysis using Indicators under Time
Dependent Covariates
ExtendedLaplace The Extended Laplace Distribution
ExtrPatt Spatial Dependencies and Indices for Extremes
ExtractTrainData Extract Values from Raster
ExtremalDep Extremal Dependence Models
ExtremeBounds Extreme Bounds Analysis (EBA)
ExtremeCI Realistic Confidence Intervals for
Non-Stationary Extreme Value Statistics
ExtremeRisks Extreme Risk Measures
EzGP Easy-to-Interpret Gaussian Process Models for
Computer Experiments
FABInference FAB p-Values and Confidence Intervals
FACTMLE Maximum Likelihood Factor Analysis
FADA Variable Selection for Supervised
Classification in High Dimension
FADPclust Functional Data Clustering Using Adaptive
Density Peak Detection
FAIRmaterials Ontology Tools with Data FAIRification in
Development
FAMetA Fatty Acid Metabolic Analysis
FAMoS A Flexible Algorithm for Model Selection
FAO56 Evapotranspiration Based on FAO Penman-Monteith
Equation
FAOSTAT Download Data from the FAOSTAT Database
FAPA Factor Analytic Profile Analysis of Ipsatized
Data
FARDEEP Fast and Robust Deconvolution of Tumor
Infiltrating Lymphocyte from Expression
Profiles using Least Trimmed Squares
FARS Factor-Augmented Regression Scenarios
FAS Factor-Augmented Sparse Regression Tuning-Free
Testing
FAST.R Analyze and Visualize FAST-Generated Data
FAVA Quantify Compositional Variability Across
Relative Abundance Vectors
FAVAR Bayesian Analysis of a FAVAR Model
FAdist Distributions that are Sometimes Used in
Hydrology
FAfA Factor Analysis for All
FAmle Maximum Likelihood and Bayesian Estimation of
Univariate Probability Distributions
FAwR Functions and Datasets for "Forest Analytics
with R"
FBFsearch Algorithm for Searching the Space of Gaussian
Directed Acyclic Graph Models Through Moment
Fractional Bayes Factors
FBMS Flexible Bayesian Model Selection and Model
Averaging
FBN FISH Based Normalization and Copy Number
Inference of SNP Microarray Data
FCO Flexible Cutoffs for Model Fit Evaluation in
Covariance-Based Structural Models
FCPS Fundamental Clustering Problems Suite
FCUSUM Fourier CUSUM Cointegration Test
FCVAR Estimation and Inference for the Fractionally
Cointegrated VAR
FD Measuring Functional Diversity (FD) from
Multiple Traits, and Other Tools for Functional
Ecology
FDOTT Optimal Transport Based Testing in Factorial
Design
FDRestimation Estimate, Plot, and Summarize False Discovery
Rates
FDRsamplesize2 Computing Power and Sample Size for the False
Discovery Rate in Multiple Applications
FDRsampsize Compute Sample Size that Meets Requirements for
Average Power and FDR
FDX False Discovery Exceedance Controlling Multiple
Testing Procedures
FDboost Boosting Functional Regression Models
FEA Finite Element Modeling for R
FENmlm Fixed Effects Nonlinear Maximum Likelihood
Models
FER Financial Engineering in R
FESta Fishing Effort Standardisation
FEprovideR Fixed Effects Logistic Model with
High-Dimensional Parameters
FFD Freedom from Disease
FFTrees Generate, Visualise, and Evaluate
Fast-and-Frugal Decision Trees
FFdownload Download Data from Kenneth French's Website
FGLMtrunc Truncated Functional Generalized Linear Models
FGRepo Functional Genomics Repository for POST-GWAS
Analysis
FGalgorithm Flury and Gautschi algorithms
FHDI Fractional Hot Deck and Fully Efficient
Fractional Imputation
FHtest Tests for Right and Interval-Censored Survival
Data Based on the Fleming-Harrington Class
FI Provide Functions for Forest Inventory
Calculations
FIESTA Forest Inventory Estimation and Analysis
FIESTAutils Utility Functions for Forest Inventory
Estimation and Analysis
FILEST Fine-Level Structure Simulator
FIND Objective Comparison of Phase I Dose-Finding
Designs
FIRM Flexible Integration of Single-Cell RNA-Seq
Data
FITSio FITS (Flexible Image Transport System)
Utilities
FKF Fast Kalman Filter
FKSUM Fast Kernel Sums
FKmL Fréchet Distance-Based K-Means and Extensions
for Longitudinal Data
FLAG Flexible and Accurate Gaussian Graphical Models
FLAME Interpretable Matching for Causal Inference
FLASHMM Fast and Scalable Single Cell Differential
Expression Analysis using Mixed-Effects Models
FLOPART Functional Labeled Optimal Partitioning
FLORAL Fit Log-Ratio Lasso Regression for
Compositional Data
FLR Fuzzy Logic Rule Classifier
FLSSS Mining Rigs for Problems in the Subset Sum
Family
FLightR Reconstruct Animal Paths from Solar Geolocation
Loggers Data
FMAT The Fill-Mask Association Test
FMAdist Frequentist Model Averaging Distribution
FMC Factorial Experiments with Minimum Level
Changes
FMCensSkewReg Finite Mixture of Censored Regression Models
with Skewed Distributions
FME A Flexible Modelling Environment for Inverse
Modelling, Sensitivity, Identifiability and
Monte Carlo Analysis
FMM Rhythmic Patterns Modeling by FMM Models
FMP Filtered Monotonic Polynomial IRT Models
FMStable Finite Moment Stable Distributions
FMradio Factor Modeling for Radiomics Data
FMsmsnReg Regression Models with Finite Mixtures of Skew
Heavy-Tailed Errors
FNN Fast Nearest Neighbor Search Algorithms and
Applications
FOCI Feature Ordering by Conditional Independence
FORD Feature Ordering by Integrated R Square
Dependence
FPCA3D Three Dimensional Functional Component Analysis
FPCdpca The FPCdpca Criterion on Distributed Principal
Component Analysis
FPDclustering PD-Clustering and Related Methods
FPLdata Read in Fantasy Premier League Data
FRACTION Numeric Number into Fraction
FRAPO Financial Risk Modelling and Portfolio
Optimisation with R
FRApp FRAP Data Analysis Using Nonlinear Mixed Effect
Models with 'shiny'
FRB Fast and Robust Bootstrap
FRCC Fast Regularized Canonical Correlation Analysis
FRCI Fuzzy & Randomized Confidence Intervals
FREEtree Tree Method for High Dimensional Longitudinal
Data
FREQ FREQ: Estimate population size from capture
frequencies
FRESA.CAD Feature Selection Algorithms for Computer Aided
Diagnosis
FRI Relative Importance of Main and Interaction
Effects
FRK Fixed Rank Kriging
FSA Simple Fisheries Stock Assessment Methods
FSAdata Data to Support Fish Stock Assessment ('FSA')
Package
FSDAM Forward Stepwise Deep Autoencoder-Based
Monotone NLDR
FSK2R An Interface Between the 'FSKX' Standard and
'R'
FSM Finite Selection Model
FSSF Generate Fully-Sequential Space-Filling Designs
Inside a Unit Hypercube
FSTpackage Unified Sequence-Based Association Tests
Allowing for Multiple Functional Annotation
Scores
FSelector Selecting Attributes
FSelectorRcpp 'Rcpp' Implementation of 'FSelector'
Entropy-Based Feature Selection Algorithms with
a Sparse Matrix Support
FSinR Feature Selection in R
FTSgof White Noise and Goodness-of-Fit Tests for
Functional Time Series
FUNTA Functional Tangential Angle Pseudo-Depth
FVDDPpkg Implement Fleming-Viot-Dependent Dirichlet
Processes
FWDselect Selecting Variables in Regression Models
FWRGB Fresh Weight Determination from Visual Image of
the Plant
FaaSr 'FaaSr' Local Test Development Package
FactChar Characterization and Diagnostic Tools for
Factorial Block Designs
FactEff Efficiencies of Block Designs for Factorial and
Fractional Factorial Experiments
FactoClass Combination of Factorial Methods and Cluster
Analysis
FactoInvestigate Automatic Description of Factorial Analysis
FactoMineR Multivariate Exploratory Data Analysis and Data
Mining
FactorAssumptions Set of Assumptions for Factor and Principal
Component Analysis
FactorCopula Factor, Bi-Factor, Second-Order and Factor Tree
Copula Models
FactorCopulaModel Factor Copula Models
FactorHet Estimate Heterogeneous Effects in Factorial
Experiments Using Grouping and Sparsity
Factoshiny Perform Factorial Analysis from 'FactoMineR'
with a Shiny Application
Fahrmeir Data from the Book "Multivariate Statistical
Modelling Based on Generalized Linear Models",
First Edition, by Ludwig Fahrmeir and Gerhard
Tutz
FakeDataR Privacy-Preserving Synthetic Data for 'LLM'
Workflows
FamEvent Family Age-at-Onset Data Simulation and
Penetrance Estimation
Familias Probabilities for Pedigrees Given DNA Data
Families Kinship Ties in (Virtual) Multi-Generation
Populations
FastBandChol Fast Estimation of a Covariance Matrix by
Banding the Cholesky Factor
FastCUB Fast Estimation of CUB Models via Louis'
Identity
FastGP Efficiently Using Gaussian Processes with Rcpp
and RcppEigen
FastGaSP Fast and Exact Computation of Gaussian
Stochastic Process
FastHamming Fast Computation of Pairwise Hamming Distances
FastImputation Learn from Training Data then Quickly Fill in
Missing Data
FastJM Semi-Parametric Joint Modeling of Longitudinal
and Survival Data
FastKM A Fast Multiple-Kernel Method Based on a
Low-Rank Approximation
FastKNN Fast k-Nearest Neighbors
FastKRR Kernel Ridge Regression using 'RcppArmadillo'
FastPCS FastPCS Robust Fit of Multivariate Location and
Scatter
FastRCS Fits the FastRCS Robust Multivariable Linear
Regression Model
FastRWeb Fast Interactive Framework for Web Scripting
Using R
FastRet Retention Time Prediction in Liquid
Chromatography
FastSegmentation Unsupervised Cell Segmentation by Fast Gaussian
Processes
FastStepGraph A Fast Algorithm for Sparse Precision Matrix
Estimation
FastSurvival Fast Kaplan-Meier, Log-Rank, and Hazard Ratio
Estimation for Survival Analysis
FastUtils Fast, Readable Utility Functions
FatTailsR Kiener Distributions and Fat Tails in Finance
and Neuroscience
FateID Quantification of Fate Bias in Multipotent
Progenitors
FaultTree Fault Trees for Risk and Reliability Analysis
FeaLect Scores Features for Feature Selection
FeatureExtraction Generating Features for a Cohort
FeatureImpCluster Feature Importance for Partitional Clustering
FeatureTerminatoR Feature Selection Engine to Remove Features
with Minimal Predictive Power
FedData Download Geospatial Data Available from Several
Federated Data Sources
FedIRT Federated Item Response Theory Models
FertNet Process Data from the Social Networks and
Fertility Survey
Fgmutils Forest Growth Model Utilities
FiRE Finder of Rare Entities (FiRE)
FiSh Fisher-Shannon Method
FielDHub A Shiny App for Design of Experiments in Life
Sciences
FieldSimR Simulation of Plot Errors and Phenotypes in
Plant Breeding Field Trials
FilmsGmooG IMDb Film Ratings from the Summer of 2022
FinAna Financial Analysis and Regression Diagnostic
Analysis
FinCal Time Value of Money, Time Series Analysis and
Computational Finance
FinCovRegularization Covariance Matrix Estimation and Regularization
for Finance
FinNet Quickly Build and Manipulate Financial Networks
FinTS Companion to Tsay (2005) Analysis of Financial
Time Series
FinanceGraphs Flexible Graphs for Analysis of Financial Data
and Time Series
FinancialMath Financial Mathematics for Actuaries
FindIt Finding Heterogeneous Treatment Effects
FinePop Fine-Scale Population Analysis
FisPro Fuzzy Inference System Design and Optimization
Fiscal Income Tax Calculations (UK)
FishDiveR Classify Aquatic Animal Behaviours from
Vertical Movement Data
FishPhyloMaker Phylogenies for a List of Finned-Ray Fishes
FishProxCompAnalyzer Proximate Composition Analysis of Fish and Feed
Ingredients
FisherEM The FisherEM Algorithm to Simultaneously
Cluster and Visualize High-Dimensional Data
FitDynMix Estimation of Dynamic Mixtures
FitUltD Fit Univariate Mixed and Usual Distributions
FixSeqMTP Fixed Sequence Multiple Testing Procedures
FixedPoint Algorithms for Finding Fixed Point Vectors of
Functions
FjordLight Available Light Within the Water Column and on
the Seafloor of Arctic Fjords
FlexDir Tools to Work with the Flexible Dirichlet
Distribution
FlexGAM Generalized Additive Models with Flexible
Response Functions
FlexParamCurve Tools to Fit Flexible Parametric Curves
FlexRL A Flexible Model for Record Linkage
FlexReg Regression Models for Bounded Continuous and
Discrete Responses
FlexScan Flexible Scan Statistics
FlexVarJM Estimate Joint Models with Subject-Specific
Variance
FlickrAPI Access to Flickr API
FloodFreqPlot Flood Probability Plotting and Graphical
Frequency Analysis
FlowRegEnvCost The Environmental Costs of Flow Regulation
FlowScreen Daily Streamflow Trend and Change Point
Screening
FlowerMate Reciprocity Indices for Style-Polymorphic
Plants
Fluidigm Handling Fluidigm Data
FluxPoint Change Point Detection for Non-Stationary and
Cross-Correlated Time Series
FluxSeparator Separation of Diffusive and Ebullitive Fluxes
FlyingR Simulation of Bird Flight Range
FnR Inbreeding and Numerator Relationship
Coefficients
FoCo2 Coherent Forecast Combination for Linearly
Constrained Multiple Time Series
FoRDM Forest Many-Objective Robust Decision Making
('FoRDM')
FoReco Forecast Reconciliation
FoRecoML Forecast Reconciliation with Machine Learning
ForCausality A Curated Collection of 'Causal Inference'
Datasets and Tools
ForIT Functions to Estimate Tree Volume and Phytomass
in the Italian Forest Inventory 2005
ForLion 'ForLion' Algorithm to Find D-Optimal Designs
for Experiments
ForagingOrg Organization Measures for Visual Foraging
ForeCA Forecastable Component Analysis
ForeComp Size-Power Tradeoff Visualization for Equal
Predictive Ability of Two Forecasts
ForecastCombinations Forecast Combinations
ForecastingEnsembles Time Series Forecasting Using 23 Individual
Models
ForestDisc Forest Discretization
ForestElementsR Data Structures and Functions for Working with
Forest Data
ForestFit Statistical Modelling for Plant Size
Distributions
ForestGapR Tropical Forest Canopy Gaps Analysis
ForestTools Tools for Analyzing Remote Sensing Forest Data
FormShare A Simple Connection Between the 'FormShare App'
and 'R' for Advanced Analytics
FormulR Comprehensive Tools for Drug Formulation
Analysis and Visualization
Formula Extended Model Formulas
FossilSim Simulation and Plots for Fossil and Taxonomy
Data
FossilSimShiny Shiny Application for 'FossilSim'
FourScores A Game for Human vs. Human or Human vs. AI
FourWayHMM Parsimonious Hidden Markov Models for Four-Way
Data
FourgameteP FourGamete Test
FrF2 Fractional Factorial Designs with 2-Level
Factors
FrF2.catlg128 Catalogues of Resolution IV 128 Run 2-Level
Fractional Factorials Up to 33 Factors that Do
Have 5-Letter Words
FracFixR Compositional Statistical Framework for RNA
Fractionation Analysis
FracKrigingR Spatial Multivariate Data Modeling
FractalParameterEstimation
Simulation and Parameter Estimation of
Randomized Sierpinski Carpets using the
p-p-p-q-Model
Fragman Fragment Analysis in R
FrailtyCompRisk Competing Risks Models for Multi-Center
Survival Data with Frailty
Frames2 Estimation in Dual Frame Surveys
FreqProf Frequency Profiles Computing and Plotting
Fstability Calculate Feature Stability
FuelDeep3D 3D Fuel Segmentation Using Terrestrial Laser
Scanning and Deep Learning
FunChisq Model-Free Functional Chi-Squared and Exact
Tests
FunSurv Modeling Time-to-Event Data with Functional
Predictors
FunWithNumbers Fun with Fractions and Number Sequences
FuncDiv Compute Contributional Diversity Metrics
FunctanSNP Functional Analysis (with Interactions) for
Dense SNP Data
FunctionalCalibration Aggregated Functional Data Calibration using
Splines and Wavelets
FunnelPlotR Funnel Plots for Comparing Institutional
Performance
FusionLearn Fusion Learning
FuzzyAHP (Fuzzy) AHP Calculation
FuzzyClass Fuzzy and Non-Fuzzy Classifiers
FuzzyImputationTest Imputation Procedures and Quality Tests for
Fuzzy Data
FuzzyM Fuzzy Cognitive Maps Operations
FuzzyNumbers Tools to Deal with Fuzzy Numbers
FuzzyNumbers.Ext.2 Apply Two Fuzzy Numbers on a Monotone Function
FuzzyPovertyR Estimation of Fuzzy Poverty Measures
FuzzyQ Fuzzy Quantification of Common and Rare Species
FuzzyR Fuzzy Logic Toolkit for R
FuzzyResampling Resampling Methods for Triangular and
Trapezoidal Fuzzy Numbers
FuzzySTs Fuzzy Statistical Tools
FuzzySimRes Simulation and Resampling Methods for Epistemic
Fuzzy Data
FuzzySpec Fuzzy Spectral Clustering with
Variable-Weighted Adjacency Matrices
FuzzyStatTra Statistical Methods for Trapezoidal Fuzzy
Numbers
G2Sd Grain-Size Statistics and Description of
Sediment
GA Genetic Algorithms
GABB Facilitation of Data Preparation and Plotting
Procedures for RDA and PCA Analyses
GACE Generalized Adaptive Capped Estimator for Time
Series Forecasting
GACFF Genetic Similarity in User-Based Collaborative
Filtering
GAD Analysis of Variance from General Principles
GADAG A Genetic Algorithm for Learning Directed
Acyclic Graphs
GAGAs Global Adaptive Generative Adjustment Algorithm
for Generalized Linear Models
GAGBLUP Genetic Algorithm Assisted Genomic Best Liner
Unbiased Prediction
GAIPE Graphical Extension with Accuracy in Parameter
Estimation (GAIPE)
GALAHAD Geometry-Adaptive Lyapunov-Assured Hybrid
Optimizer with Softplus Reparameterization and
Trust-Region Control
GALLO Genomic Annotation in Livestock for Positional
Candidate LOci
GAMens Applies GAMbag, GAMrsm and GAMens Ensemble
Classifiers for Binary Classification
GANPA Gene Association Network-Based Pathway Analysis
(GANPA)
GANPAdata The GANPA Datasets Package
GAPR Generalized Association Plots
GARCH.X Estimation and Exogenous Covariate Selection
for ARCH-m(X), Additive ARCH-m(x), and GARCH-X
Models
GARCHIto Class of GARCH-Ito Models
GARCHSK Estimating a GARCHSK Model and GJRSK Model
GARCOM Gene and Region Counting of Mutations
("GARCOM")
GAReg Genetic Algorithms in Regression
GAparsimony Searching Parsimony Models with Genetic
Algorithms
GB2 Generalized Beta Distribution of the Second
Kind: Properties, Likelihood, Estimation
GB2group Estimation of the Generalised Beta Distribution
of the Second Kind from Grouped Data
GB5mcPred Gradient Boosting Algorithm for Predicting
Methylation States
GBASS Generalized Bayesian Adaptive Smoothing Splines
GBJ Generalized Berk-Jones Test for Set-Based
Inference in Genetic Association Studies
GBOP2 Generalized Bayesian Optimal Phase II Design
(G-BOP2)
GCCfactor GCC Estimation of the Multilevel Factor Model
GCD Global Charcoal Database
GCEstim Regression Coefficients Estimation Using the
Generalized Cross Entropy
GCPBayes Bayesian Meta-Analysis of Pleiotropic Effects
Using Group Structure
GCPM Generalized Credit Portfolio Model
GCSM Implements Generic Composite Similarity Measure
GCalignR Simple Peak Alignment for Gas-Chromatography
Data
GCubeR Estimation of Forest Volume, Biomass, and
Carbon
GD Geographical Detectors for Assessing Spatial
Factors
GDAdata Datasets for the Book Graphical Data Analysis
with R
GDAtools Geometric Data Analysis
GDILM.ME Spatial Modeling of Infectious Diseases with
Co-Variate Error
GDILM.SIR Inference for Infectious Disease Transmission
in SIR Framework
GDINA The Generalized DINA Model Framework
GDPuc Easily Convert GDP Data
GDSARM Gauss - Dantzig Selector: Aggregation over
Random Models
GE General Equilibrium Modeling
GEC Generalized Exponentiated Composite
Distributions
GECal Generalized Entropy Calibration
GEEaSPU Adaptive Association Tests for Multiple
Phenotypes using Generalized Estimating
Equations (GEE)
GEEmediate Mediation Analysis for Generalized Linear
Models Using the Difference Method
GEInfo Gene-Environment Interaction Analysis
Incorporating Prior Information
GEInter Robust Gene-Environment Interaction Analysis
GEMSS Generalization Error Minimization in
SubSampling for Gaussian Processes
GENEAclassify Segmentation and Classification of
Accelerometer Data
GENEAcore Pre-Processing of 'GENEActiv' Data
GENEAread Package for Reading Binary Files
GENLIB Genealogical Data Analysis
GENMETA Implements Generalized Meta-Analysis Using
Iterated Reweighted Least Squares Algorithm
GEOmap Topographic and Geologic Mapping
GEOmetadb A compilation of metadata from NCBI GEO
GEOquery Get data from NCBI Gene Expression Omnibus
(GEO)
GESE Gene-Based Segregation Test
GET Global Envelopes
GETdesigns Generalized Extended Triangular Designs
('GETdesigns')
GEVACO Joint Test of Gene and GxE Interactions via
Varying Coefficients
GEVcdn GEV Conditional Density Estimation Network
GEint Misspecified Models for Gene-Environment
Interaction
GEmetrics Best Linear Unbiased Prediction of
Genotype-by-Environment Metrics
GFA Group Factor Analysis
GFD Tests for General Factorial Designs
GFDmcv General Hypothesis Testing Problems for
Multivariate Coefficients of Variation
GFDrmst Multiple RMST-Based Tests in General Factorial
Designs
GFDrmtl Multiple RMTL-Based Tests for Competing Risks
Data in General Factorial Designs
GFDsurv Tests for Survival Data in General Factorial
Designs
GFE Gross Flows Estimation under Complex Surveys
GFFStrandLoc Strand-Wise Gene and Protein Extraction from
GFF3 Files
GFGM.copula Generalized Farlie-Gumbel-Morgenstern Copula
GFM Generalized Factor Model
GFisher Generalized Fisher's Combination Tests Under
Dependence
GGClassification Gabriel Graph Based Large-Margin Classifiers
GGEBiplots GGE Biplots with 'ggplot2'
GGIR Raw Accelerometer Data Analysis
GGIRread Wearable Accelerometer Data File Readers
GGMncv Gaussian Graphical Models with Nonconvex
Regularization
GGMridge Gaussian Graphical Models Using Ridge Penalty
Followed by Thresholding and Reestimation
GGRidge Graphical Group Ridge
GGUM Generalized Graded Unfolding Model
GGally Extension to 'ggplot2'
GGenemy Audit 'ggplot2' Visualizations for
Accessibility and Best Practices
GGoutlieR Identify Individuals with Unusual Geo-Genetic
Patterns
GHCNr Download Weather Station Data from GHCNd
GHRexplore Exploratory Analysis of Temporal and
Spatio-Temporal Health Data
GHRmodel Bayesian Hierarchical Modelling of
Spatio-Temporal Health Data
GIC A General Iterative Clustering Algorithm
GIFT Access to the Global Inventory of Floras and
Traits (GIFT)
GIGrvg Random Variate Generator for the GIG
Distribution
GIMMEgVAR Group Iterative Multiple Model Estimation with
'graphicalVAR'
GINAX Performs Genome-Wide Iterative Fine-Mapping for
Non-Gaussian Data using GINA-X
GISINTEGRATION GIS Integration
GISSB Network Analysis on the Norwegian Road Network
GISTools Further Capabilities in Geographic Information
Science
GInSARCorW GACOS InSAR Correction Workflow
GIplot Gaussian Interval Plot (GIplot)
GJRM Generalised Joint Regression Modelling
GJRM.data Data Sets for Copula Additive Distributional
Regression Using R
GK2011 Gaines and Kuklinski (2011) Estimators for
Hybrid Experiments
GLAD Gain and Loss Analysis of DNA
GLBFP General Linear Blend Frequency Polygon Density
Estimation
GLCMTextures GLCM Textures of Raster Layers
GLDEX Fitting Single and Mixture of Generalised
Lambda Distributions
GLDreg Fit GLD Regression/Quantile/AFT Model to Data
GLMBasedRaschEstimation
GLM-Based Estimation for Rasch Model Parameters
GLMMRR Generalized Linear Mixed Model (GLMM) for
Binary Randomized Response Data
GLMMadaptive Generalized Linear Mixed Models using Adaptive
Gaussian Quadrature
GLMMcosinor Fit a Cosinor Model Using a Generalized Mixed
Modeling Framework
GLMMselect Bayesian Model Selection for Generalized Linear
Mixed Models
GLMcat Generalized Linear Models for Categorical
Responses
GLMpack Data and Code to Accompany Generalized Linear
Models, 2nd Edition
GLMsData Generalized Linear Model Data Sets
GLSME Generalized Least Squares with Measurement
Error
GLSUP Generalised Linear Step-Up Procedure for
Multiple Hypothesis Testing
GLmom Generalized L-Moments Estimation for Extreme
Value Distributions
GMAC Genomic Mediation Analysis with Adaptive
Confounding Adjustment
GMC Generalized Measure of Correlation (GMC)
GMCM Fast Estimation of Gaussian Mixture Copula
Models
GMDH Short Term Forecasting via GMDH-Type Neural
Network Algorithms
GMDH2 Binary Classification via GMDH-Type Neural
Network Algorithms
GMDHreg Regression using GMDH Algorithms
GMMAT Generalized Linear Mixed Model Association
Tests
GMMBoost Likelihood-Based Boosting for Generalized Mixed
Models
GMMinit Optimal Initial Value for Gaussian Mixture
Model
GMPro Graph Matching with Degree Profiles
GMSE Generalised Management Strategy Evaluation
Simulator
GMSimpute Generalized Mass Spectrum Missing Peaks
Abundance Imputation
GMX Extended Graphical Model Checks for the Rasch
Family of Models
GNAR Methods for Fitting Network Time Series Models
GNE Computation of Generalized Nash Equilibria
GNRS Access the 'Geographic Name Resolution Service'
GNSSseg Homogenization of GNSS Series
GOCompare Comprehensive GO Terms Comparison Between
Species
GOFShiny Interactive Document for Working with Goodness
of Fit Analysis
GOFclustering Goodness-of-Fit Testing for Model-Based
Clustering
GORCure Fit Generalized Odds Rate Mixture Cure Model
with Interval Censored Data
GOSemSim GO-terms Semantic Similarity Measures
GOplot Visualization of Functional Analysis Data
GOstats Tools for manipulating GO and microarrays
GPAbin Unifying Multiple Biplot Visualisations into a
Single Display
GPArotateDF Derivative Free Gradient Projection Factor
Rotation
GPArotation Gradient Projection Factor Rotation
GPBayes Tools for Gaussian Process Modeling in
Uncertainty Quantification
GPCMlasso Differential Item Functioning in Generalized
Partial Credit Models
GPCsign Gaussian Process Classification as Described in
Bachoc et al. (2020)
GPEMR Growth Parameter Estimation Method
GPFDA Gaussian Process for Functional Data Analysis
GPGame Solving Complex Game Problems using Gaussian
Processes
GPL2025 Convert Chip ID of the GPL2015 into GeneBank
Accession and ENTREZID
GPLTR Generalized Partially Linear Tree-Based
Regression Model
GPP Gaussian Process Projection
GPRMortality Gaussian Process Regression for Mortality Rates
GPSCDF Generalized Propensity Score Cumulative
Distribution Function
GPSeqClus Sequential Clustering Algorithm for Location
Data
GPTCM Generalized Promotion Time Cure Model with
Bayesian Shrinkage Priors
GPTreeO Dividing Local Gaussian Processes for Online
Learning Regression
GPUmatrix Basic Linear Algebra with GPU
GPareto Gaussian Processes for Pareto Front Estimation
and Optimization
GPfit Gaussian Processes Modeling
GPflexViz Graphical Visualizations Related to Genomic
Prediction
GPoM Generalized Polynomial Modelling
GPpenalty Penalized Likelihood in Gaussian Processes
GPvam Maximum Likelihood Estimation of Multiple
Membership Mixed Models Used in Value-Added
Modeling
GPvecchia Scalable Gaussian-Process Approximations
GRAB Genome-Wide Robust Analysis for Biobank Data
(GRAB)
GRANDpriv Graph Release with Assured Node Differential
Privacy
GRCFE Generate Optimal Row-Column Factorial
Experiments
GRCRegression Modified Poisson Regression of Grouped and
Right-Censored Counts
GRCdesigns Generalized Row-Column Designs
GREENREG Tool for Statistical and Environmental Analysis
GREENeR Geospatial Regression Equation for European
Nutrient Losses (GREEN)
GREMLINS Generalized Multipartite Networks
GRIDCOPULA Bivariate Copula Functions Based on Regular
Grid
GRIN2 Genomic Random Interval (GRIN)
GRNNs General Regression Neural Networks Package
GROAN Genomic Regression Workbench
GRShiny Graded Response Model
GRSxE Testing Gene-Environment Interactions Through
Genetic Risk Scores
GRelevance Graph-Based k-Sample Comparisons and Relevance
Analysis in High Dimensions
GSA Gene Set Analysis
GSA.UN Global Sensitivity Analysis Tool
GSD Graph Signal Decomposition
GSDA Gene Set Distance Analysis (GSDA)
GSE Robust Estimation in the Presence of Cellwise
and Casewise Contamination and Missing Data
GSEABase Gene set enrichment data structures and methods
GSED Group Sequential Enrichment Design
GSEMA Gene Set Enrichment Meta-Analysis
GSM Gamma Shape Mixture
GSMX Multivariate Genomic Selection
GSODR Global Surface Summary of the Day ('GSOD')
Weather Data Client
GSSE Genotype-Specific Survival Estimation
GSSTDA Progression Analysis of Disease with Survival
using Topological Data Analysis
GSVA Gene Set Variation Analysis for Microarray and
RNA-Seq Data
GSelection Genomic Selection
GSparO Group Sparse Optimization
GTAPViz Automating 'GTAP' Data Processing and
Visualization
GTDL The Generalized Time-Dependent Logistic Family
GTEs Group Technical Effects
GTRT Graph Theoretic Randomness Tests
GTbasedIM Game Theory-Based Influence Measures
GUD Bayesian Modal Regression Based on the GUD
Family
GUEST Graphical Models in Ultrahigh-Dimensional and
Error-Prone Data via Boosting Algorithm
GUILDS Implementation of Sampling Formulas for the
Unified Neutral Model of Biodiversity and
Biogeography, with or without Guild Structure
GUTS Fast Calculation of the Likelihood of a
Stochastic Survival Model
GUniFrac Generalized UniFrac Distances, Distance-Based
Multivariate Methods and Feature-Based
Univariate Methods for Microbiome Data Analysis
GVARX Perform Global Vector Autoregression Estimation
and Inference
GVS 'Geocoordinate Validation Service'
GWASExactHW Exact Hardy-Weinburg Testing for Genome Wide
Association Studies
GWASTools Tools for Genome Wide Association Studies
GWASbyCluster Identifying Significant SNPs in Genome Wide
Association Studies (GWAS) via Clustering
GWASinlps Non-Local Prior Based Iterative Variable
Selection Tool for Genome-Wide Association
Studies
GWASinspector Comprehensive and Easy to Use Quality Control
of GWAS Results
GWEX Multi-Site Stochastic Models for Daily
Precipitation and Temperature
GWI Count and Continuous Generalized Variability
Indexes
GWLelast Geographically Weighted Logistic Elastic Net
Regression
GWPR.light Geographically Weighted Panel Regression
GWRLASSO A Hybrid Model for Spatial Prediction Through
Local Regression
GWRM Generalized Waring Regression Model for Count
Data
GWSDAT GroundWater Spatiotemporal Data Analysis Tool
(GWSDAT)
GWalkR Interactive Exploratory Data Analysis Tool
GWlasso Geographically Weighted Lasso
GWmodel Geographically-Weighted Models
GWnnegPCA Geographically Weighted Non-Negative Principal
Components Analysis
GWnorm G-Wishart Normalising Constants for Gaussian
Graphical Models
GWpcor Geographically Weighted Partial Correlation
Coefficient
GWsignif Estimating Genome-Wide Significance for Whole
Genome Sequencing Studies, Either Single SNP
Tests or Region-Based Tests
GaSP Train and Apply a Gaussian Stochastic Process
Model
GalaxyR 'Galaxy' API Implementation
GameTheory Cooperative Game Theory
Gammareg Classic Gamma Regression: Joint Modeling of
Mean and Shape Parameters
GapAnalysis Conservation Indicators Using Spatial
Information
GauPro Gaussian Process Fitting
GaussSuppression Tabular Data Suppression using Gaussian
Elimination
GaussianHMM1d Inference, Goodness-of-Fit and Forecast for
Univariate Gaussian Hidden Markov Models
GeDS Geometrically Designed Spline Regression
GeNetIt Spatial Graph-Theoretic Genetic Gravity
Modelling
GeRnika Simulation, Visualization and Comparison of
Tumor Evolution Data
GenAI Generative Artificial Intelligence
GenAlgo Classes and Methods to Use Genetic Algorithms
for Feature Selection
GenBinomApps Clopper-Pearson Confidence Interval and
Generalized Binomial Distribution
GenEst Generalized Mortality Estimator
GenHMM1d Goodness-of-Fit for Zero-Inflated Univariate
Hidden Markov Models
GenMarkov Multivariate Markov Chains
GenOU Sequential Change-Point Tests for Generalized
Ornstein-Uhlenbeck Processes
GenOrd Simulation of Discrete Random Variables with
Given Correlation Matrix and Marginal
Distributions via a Gaussian or Student's t
Copula
GenSA R Functions for Generalized Simulated Annealing
GenTag Generate Color Tag Sequences
GenTwoArmsTrialSize Generalized Two Arms Clinical Trial Sample Size
Calculation
GenWin Spline Based Window Boundaries for Genomic
Analyses
GencoDymo2 Comprehensive Analysis of 'GENCODE' Annotations
and Splice Site Motifs
GenderInfer This is a Collection of Functions to Analyse
Gender Differences
GeneCycle Identification of Periodically Expressed Genes
GeneF Package for Generalized F-Statistics
GeneNMF Non-Negative Matrix Factorization for
Single-Cell Omics
GeneNet Modeling and Inferring Gene Networks
GenePopStats Population Genetics Statistics for Selective
Sweep
GeneScape Simulation of Single Cell RNA-Seq Data with
Complex Structure
GeneScoreR Gene Scoring from Count Tables
GeneralOaxaca Blinder-Oaxaca Decomposition for Generalized
Linear Model
GeneralizedHyperbolic The Generalized Hyperbolic Distribution
GeneralizedUmatrix Credible Visualization for Two-Dimensional
Projections of Data
GeneralizedUmatrixGPU Credible Visualization for Two-Dimensional
Projections of Data
GeneralizedWendland Fully Parameterized Generalized Wendland
Covariance Function
GenerateIndexPedigree Generate Pedigrees for Index Case Based on US
Census Data
GenericML Generic Machine Learning Inference
GeneticSubsetter Identify Favorable Subsets of Germplasm
Collections
GenoPop Genotype Imputation and Population Genomics
Efficiently from Variant Call Formatted (VCF)
Files
GenoTriplo Genotyping Triploids (or Diploids) from
Luminescence Data
GenomeAdmixR Simulate Admixture of Genomes
GenomeInfoDb Utilities for manipulating chromosome names,
including modifying them to follow a particular
naming style
GenomicAlignments Representation and manipulation of short
genomic alignments
GenomicDataCommons NIH / NCI Genomic Data Commons Access
GenomicFeatures Query the gene models of a given
organism/assembly
GenomicInteractions Utilities for handling genomic interaction data
GenomicRanges Representation and manipulation of genomic
intervals
GenomicSig Computation of Genomic Signatures
GenomicTools.fileHandler
File Handlers for Genomic Data Analysis
GeoAdjust Accounting for Random Displacements of True GPS
Coordinates of Data
GeoDensityR Generate Density Rasters from Polygon and
Census Data
GeoFIS Spatial Data Processing for Decision Making
GeoModels Procedures for Gaussian and Non Gaussian
Geostatistical (Large) Data Analysis
GeoMongo Geospatial Queries Using 'PyMongo'
GeoRange Calculating Geographic Range from Occurrence
Data
GeoThinneR Efficient Spatial Thinning of Species
Occurrences
GeoTox Spatiotemporal Mixture Risk Assessment
GeoWeightedModel User-Friendly Interface for
Geographically-Weighted Models
GeodRegr Geodesic Regression
GeomArchetypal Finds the Geometrical Archetypal Analysis of a
Data Frame
GeometricMorphometricsMix
Heterogeneous Methods for Shape and Other
Multidimensional Data
GephiForR 'Gephi' Network Visualization
GerminaR Indices and Graphics for Assess Seed
Germination Process
GetBCBData Imports Datasets from BCB (Central Bank of
Brazil) using Its Official API
GetDFPData2 Reading Annual and Quarterly Financial Reports
from B3
GetFREData Reading FRE Corporate Data of Public Traded
Companies from B3
GetLattesData Reading Bibliometric Data from Lattes Platform
GetQuandlData Fast and Cached Import of Data from 'Quandl'
Using the 'json API'
GetTDData Get Data for Brazilian Bonds (Tesouro Direto)
GetoptLong Parsing Command-Line Arguments
Ghat Quantifying Evolution and Selection on Complex
Traits
Ghost Missing Data Segments Imputation in
Multivariate Streams
GiANT Gene Set Uncertainty in Enrichment Analysis
GiRaF Gibbs Random Fields Analysis
Gifi Multivariate Analysis with Optimal Scaling
GillespieSSA Gillespie's Stochastic Simulation Algorithm
(SSA)
GillespieSSA2 Gillespie's Stochastic Simulation Algorithm for
Impatient People
GimmeMyPlot Graphical Utilities for Visualizing and
Exploring Data
GimmeMyStats Statistics Utilities
Gini Gini Coefficient
GiniDecompLY Gini Decomposition by Income Sources
GiniDistance A New Gini Correlation Between Quantitative and
Qualitative Variables
GitAI Extracts Knowledge from 'Git' Repositories
GitStats Standardized Git Repository Data
GlarmaVarSel Variable Selection in Sparse GLARMA Models
Glarmadillo Solve the Graphical Lasso Problem with
'Armadillo'
GlmSimulatoR Creates Ideal Data for Generalized Linear
Models
GlobalAncova Global test for groups of variables via model
comparisons
GlobalOptions Generate Functions to Get or Set Global Options
Gmedian Geometric Median, k-Medians Clustering and
Robust Median PCA
Gmisc Descriptive Statistics, Transition Plots, and
More
GmooG Datasets for the Book 'Getting (more out of)
Graphics'
GmptzCurve Gompertz Curve Fitting
GoFKernel Testing Goodness-of-Fit with the Kernel Density
Estimator
GoMiner Automate the Mapping Between a List of Genes
and Gene Ontology Categories
GofCens Goodness-of-Fit Methods for Right-Censored Data
GomoGomonoMi Animate Text using the 'Animate.css' Library
GoodFibes Detection and Reconstruction of Muscle Fibers
from diceCT Image Data
GoodFitSBM Monte Carlo Goodness-of-Fit Tests for
Stochastic Block Models
GoodmanKruskal Association Analysis for Categorical Variables
Goodreader Scrape and Analyze 'Goodreads' Book Data
GoogleKnowledgeGraphR Retrieve Information from 'Google Knowledge
Graph' API
GowerSom Self-Organizing Maps for Mixed-Attribute Data
Using Gower Distance
GpGp Fast Gaussian Process Computation Using
Vecchia's Approximation
GrFA Group Factor Analysis
GrabSVG Granularity-Based Spatially Variable Genes
Identifications
Grace Graph-Constrained Estimation and Hypothesis
Tests
GramQuad Gram Quadrature
GraphRankTest Rank in Similarity Graph Edge-Count Two-Sample
Test (RISE)
GrapheR A Multi-Platform GUI for Drawing Customizable
Graphs in R
GreedyEPL Greedy Expected Posterior Loss
GreedyExperimentalDesign
Greedy Experimental Design Construction
GreedyExperimentalDesignJARs
GreedyExperimentalDesign JARs
Greg Regression Helper Functions
GregoryQuadrature Gregory Weights for Function Integration
GreyModel Fitting and Forecasting of Grey Model
Greymodels Shiny App for Grey Forecasting Model
GridOnClusters Multivariate Joint Grid Discretization
GroupBN Inferring Group Bayesian Networks using
Hierarchical Feature Clustering
GroupComparisons Paired/Unpaired Parametric/Non-Parametric Group
Comparisons
GroupSeq Group Sequential Design Probabilities - With
Graphical User Interface
GroupTest Multiple Testing Procedure for Grouped
Hypotheses
GrowthCurveME Mixed-Effects Modeling for Growth Data
GrpString String Patterns and Statistical Differences
Between Two Groups of Strings
GsymPoint Estimation of the Generalized Symmetry Point,
an Optimal Cutpoint in Continuous Diagnostic
Tests
Guerry Maps, Data and Methods Related to Guerry (1833)
"Moral Statistics of France"
GulFM General Unilateral Load Estimator for Two-Layer
Latent Factor Models
Gviz Plotting data and annotation information along
genomic coordinates
GxEScanR Run GWAS/GWEIS Scans Using Binary Dosage Files
GxEprs Genotype-by-Environment Interaction in
Polygenic Score Models
H2x2Factorial Sample Size Calculation in Hierarchical 2x2
Factorial Trials
HAC Estimation, Simulation and Visualization of
Hierarchical Archimedean Copulae (HAC)
HACSim Iterative Extrapolation of Species' Haplotype
Accumulation Curves for Genetic Diversity
Assessment
HAMMER High-Dimensional Factor-Analytic Representation
Modeling and Metrics
HARplus Enhanced R Package for 'GEMPACK' .har and .sl4
Files
HARr 'HAR' ('GEMPACK') File Read/Write Utility
HBSTM Hierarchical Bayesian Space-Time Models for
Gaussian Space-Time Data
HBV.IANIGLA Modular Hydrological Model
HCD Hierarchical Community Detection by Recursive
Partitioning
HCPclust Hierarchical Conformal Prediction for Clustered
Data with Missing Responses
HCR Causal Discovery from Discrete Data using
Hidden Compact Representation
HCTDesign Group Sequential Design for Historical Control
Trial with Survival Outcome
HCUPtools Access and Work with HCUP Resources and
Datasets
HCmodelSets Regression with a Large Number of Potential
Explanatory Variables
HDANOVA High-Dimensional Analysis of Variance
HDBRR High Dimensional Bayesian Ridge Regression
without MCMC
HDCD High-Dimensional Changepoint Detection
HDCurves Hierarchical Derivative Curve Estimation
HDF5Array HDF5 datasets as array-like objects in R
HDGLM Tests for High Dimensional Generalized Linear
Models
HDInterval Highest (Posterior) Density Intervals
HDLSSkST Distribution-Free Exact High Dimensional Low
Sample Size k-Sample Tests
HDMAADMM ADMM for High-Dimensional Mediation Models
HDMFA High-Dimensional Matrix Factor Analysis
HDMT A Multiple Testing Procedure for
High-Dimensional Mediation Hypotheses
HDNRA High-Dimensional Location Testing with
Normal-Reference Approaches
HDOMDesign High-Dimensional Orthogonal Maximin Distance
Designs
HDRFA High-Dimensional Robust Factor Analysis
HDShOP High-Dimensional Shrinkage Optimal Portfolios
HDSinRdata Data for the 'Mastering Health Data Science
Using R' Online Textbook
HDSpatialScan Multivariate and Functional Spatial Scan
Statistics
HDStIM High Dimensional Stimulation Immune Mapping
('HDStIM')
HDTSA High Dimensional Time Series Analysis Tools
HDXBoxeR Analysis of Hydrogen-Deuterium Exchange
Mass-Spectrometry Data
HDclassif High Dimensional Supervised Classification and
Clustering
HDclust Clustering High Dimensional Data with Hidden
Markov Model on Variable Blocks
HDcpDetect Detect Change Points in Means of High
Dimensional Data
HDiR Directional Highest Density Regions
HDoutliers Leland Wilkinson's Algorithm for Detecting
Multidimensional Outliers
HDtweedie The Lasso for Tweedie's Compound Poisson Model
Using an IRLS-BMD Algorithm
HEDA 'Hydropeaking Events Detection Algorithm'
HEssRNA Heritability-Based Estimation of Sample Size
for RNA-Seq Data
HEtools Homomorphic Encryption Polynomials
HGDMr Hysteretic and Gatekeeping Depressions Model
HGMND Heterogeneous Graphical Model for Non-Negative
Data
HGNChelper Identify and Correct Invalid HGNC Human Gene
Symbols and MGI Mouse Gene Symbols
HGSL Heterogeneous Group Square-Root Lasso
HGraph Use Graph Structure to Travel
HH Statistical Analysis and Data Display:
Heiberger and Holland
HHBayes Bayesian Household Transmission Modeling with
'Stan'
HIMA High-Dimensional Mediation Analysis
HIViz Interactive Dashboard for 'HIV' Data
Visualization
HK80 Conversion Tools for HK80 Geographical
Coordinate System
HKRbook Apps and Data for the Book "Introduction to
Statistics"
HLAtools Toolkit for HLA Immunogenomics
HLMdiag Diagnostic Tools for Hierarchical (Multilevel)
Linear Models
HLSM Hierarchical Latent Space Network Model
HMC High-Dimensional Mean Comparison with
Projection and Cross-Fitting
HMDA Holistic Multimodel Domain Analysis for
Exploratory Machine Learning
HMDHFDplus Read Human Mortality Database and Human
Fertility Database Data from the Web
HMM Hidden Markov Models
HMMHSMM Inference and Estimation of Hidden Markov
Models and Hidden Semi-Markov Models
HMMRel Hidden Markov Models for Reliability and
Maintenance
HMMcopula Markov Regime Switching Copula Models
Estimation and Goodness-of-Fit
HMMextra0s Hidden Markov Models with Extra Zeros
HMMpa Analysing Accelerometer Data Using Hidden
Markov Models
HMR Flux Estimation with Static Chamber Data
HMTL Heterogeneous Multi-Task Feature Learning
HNPclassifier Hierarchical Neyman-Pearson Classification for
Ordered Classes
HOIFCar Covariate Adjustment in RCT by Higher-Order
Influence Functions
HOME Harmonized Orphanhood Mortality Estimation
HOasso Higher Order Assortativity for Complex Networks
HPZoneAPI 'HPZone' API Interface
HQM Superefficient Estimation of Future Conditional
Hazards Based on Marker Information
HRTnomaly Historical, Relational, and Tail
Anomaly-Detection Algorithms
HRW Datasets, Functions and Scripts for
Semiparametric Regression Supporting Harezlak,
Ruppert & Wand (2018)
HSAR Hierarchical Spatial Autoregressive Model
HSAUR A Handbook of Statistical Analyses Using R (1st
Edition)
HSAUR2 A Handbook of Statistical Analyses Using R (2nd
Edition)
HSAUR3 A Handbook of Statistical Analyses Using R (3rd
Edition)
HSEtest Homogeneity of Stratum Effects Test
HSPOR Hidden Smooth Polynomial Regression for Rupture
Detection
HTDV Hypothesis Testing for Dependent Variables with
Unbalanced Data
HTGM High Throughput 'GoMiner'
HTGM2D Two Dimensional High Throughput 'GoMiner'
HTGM3D Three Dimensional High Throughput 'GoMiner'
HTGM4D Four Dimensional High Throughput 'GoMiner'
HTLR Bayesian Logistic Regression with Heavy-Tailed
Priors
HTMLUtils Facilitates Automated HTML Report Creation
HTRX Haplotype Trend Regression with eXtra
Flexibility (HTRX)
HTSCluster Clustering High-Throughput Transcriptome
Sequencing (HTS) Data
HTSFilter Filter replicated high-throughput transcriptome
sequencing data
HTSeed Fitting of Hydrotime Model for Seed Germination
Time Course
HTSeedGLM Hydro Thermal Time Analysis of Seed Germination
Using Generalised Linear Model
HTT Hypothesis Testing Tree
HUM Compute HUM Value and Visualize ROC Curves
HVT Constructing Hierarchical Voronoi Tessellations
and Overlay Heatmaps for Data Analysis
HWEintrinsic Objective Bayesian Testing for the
Hardy-Weinberg Equilibrium Problem
HYDROCAL Hydraulic Roughness Calculator
HYPEtools Tools for Processing and Analyzing Files from
the Hydrological Catchment Model HYPE
HZIP Likelihood-Based Inference for Joint Modeling
of Correlated Count and Binary Outcomes with
Extra Variability and Zeros
HaDeX Analysis and Visualisation of
Hydrogen/Deuterium Exchange Mass Spectrometry
Data
HaDeX2 Analysis and Visualisation of
Hydrogen/Deuterium Exchange Mass Spectrometry
Data
HadIBDs Incomplete Block Designs using Hadamard Matrix
(HadIBDs)
HadamardR Hadamard Matrix Generation
HanStat Package for Easy Interpretation of Statistical
Methods
HandTill2001 Multiple Class Area under ROC Curve
Hapi Inference of Chromosome-Length Haplotypes Using
Genomic Data of Single Gamete Cells
Haplin Analyzing Case-Parent Triad and/or Case-Control
Data with SNP Haplotypes
HaploCatcher A Predictive Haplotyping Package
HaploDiploidEquilibrium
Calculate F Statistics Using Mixed Haploid and
Diploid Organism Data
HaploSim Functions to Simulate Haplotypes
HaploVar Defining Local Haplotype Variants for Use in
Trait Association and Trait Prediction Analyses
HardyWeinberg Statistical Tests and Graphics for
Hardy-Weinberg Equilibrium
Harvest.Tree Harvest the Classification Tree
Hassani.SACF Computing Lower Bound of Ljung-Box Test
Hassani.Silva A Test for Comparing the Predictive Accuracy of
Two Sets of Forecasts
HausdorffGoF One- And Two-Sample Hausdorff Goodness-of-Fit
Test
HazardDiff Conditional Treatment Effect for Competing
Risks
HealthCal Health Calculator
HealthMarkers Clinical and Metabolic Biomarker Calculation
Toolkit
HeatmapR Create Heatmaps Using Base Graphics
Heatplus Heatmaps with row and/or column covariates and
colored clusters
HeckmanEM Fit Normal, Student-t or Contaminated Normal
Heckman Selection Models
HeckmanStan Heckman Selection Models Based on Bayesian
Analysis
HellCor The Hellinger Correlation
HelloFrog A Quirky ASCII-Art Frog Alternative to 'print'
HelpersMG Tools for Various R Functions Helpers
HetSeq Identifying Modulators of Cellular Responses
Leveraging Intercellular Heterogeneity
HeterFunctionalData Test of No Main and/or Interaction Effects in
Functional Data
HextractoR Integrated Tool for Hairping Extraction of RNA
Sequences
HhP Hierarchical Heterogeneity Analysis via
Penalization
HiCDOC A/B compartment detection and differential
analysis
HiCParser Parser for HiC data in R
HiCcompare HiCcompare: Joint normalization and comparative
analysis of multiple Hi-C datasets
HiClimR Hierarchical Climate Regionalization
HiCocietyExample Example HiC and Two 'HiCociety' Outputs for
Demonstration and Testing
HiDimDA High Dimensional Discriminant Analysis
HiGarrote Nonnegative Garrote Method Incorporating
Hierarchical Relationships
HiResTEC Non-Targeted Fluxomics on High-Resolution
Mass-Spectrometry Data
HiTC High Throughput Chromosome Conformation Capture
analysis
HiddenMarkov Hidden Markov Models
HierPortfolios Hierarchical Risk Clustering Portfolio
Allocation Strategies
HighFive The 'HighFive' 'C++' Interface to 'HDF5'
HighestMedianRules Implementation of Voting Rules Electing the
Candidate with Highest Median Grade
HistDAWass Histogram-Valued Data Analysis
HistDat Summary Statistics for Histogram/Count Data
HistData Data Sets from the History of Statistics and
Data Visualization
HistogramTools Utility Functions for R Histograms
HiveR 2D and 3D Hive Plots for R
Hmisc Harrell Miscellaneous
Hmsc Hierarchical Model of Species Communities
HoRM Supplemental Functions and Datasets for
"Handbook of Regression Methods"
HodgesTools Common Use Tools for Genomic Analysis
Holomics A User-Friendly R 'shiny' Application for
Multi-Omics Data Integration and Analysis
Homeric Doughnut Plots
HomomorphicEncryption BFV, BGV, CKKS Schema for Fully Homomorphic
Encryption
HonestDiD Robust Inference in Difference-in-Differences
and Event Study Designs
Horsekicks Provide Extensions to the Prussian Army Death
by Horsekick Data
HospitalNetwork Building Networks of Hospitals Through Patients
Transfers
Hotelling Hotelling's T^2 Test and Variants
HotellingEllipse Hotelling’s T-Squared Statistic and Ellipse
HuraultMisc Guillem Hurault Functions' Library
HurreconR Models Hurricane Wind Speed, Wind Direction,
and Wind Damage
HyMETT Hydrologic Model Evaluation and Time-Series
Tools
HyRiM Multicriteria Risk Management using Zero-Sum
Games with Vector-Valued Payoffs that are
Probability Distributions
HybridDesign Hybrid Design for Phase I Dose-Finding Studies
HybridMicrobiomes Analysis of Host-Associated Microbiomes from
Hybrid Organisms
HydroCode Hydrological Codes
HydroMe Estimating Water Retention and Infiltration
Model Parameters using Experimental Data
HydroPortailStats 'HydroPortail' Statistical Functions
HyperG Hypergraphs in R
HyperbolicDist The Hyperbolic Distribution
IADT Interaction Difference Test for Prediction
Models
IALS Iterative Alternating Least Square Estimation
for Large-Dimensional Matrix Factor Model
IAPWS95 Thermophysical Properties of Water and Steam
IASD Model Selection for Index of Asymmetry
Distribution
IATScore Scoring Algorithm for the Implicit Association
Test (IAT)
IATanalytics Compute Effect Sizes and Reliability for
Implicit Association Test (IAT) Data
IATscores Implicit Association Test Scores Using Robust
Statistics
IAcsSPCR Data and Functions for "An Intro. to Accept.
Samp. & SPC/R"
IBCF.MTME Item Based Collaborative Filtering for
Multi-Trait and Multi-Environment Data
IBDInfer Design-Based Causal Inference Method for
Incomplete Block Designs
IBFS Initial Basic Feasible Solution for
Transportation Problem
IBLM Interpretable Boosted Linear Models
IBMPopSim Individual Based Model Population Simulation
IBRtools Integrating Biomarker-Based Assessments and
Radarchart Creation
IBclust Information Bottleneck Methods for Clustering
Mixed-Type Data
IBrokers R API to Interactive Brokers Trader Workstation
ICAOD Optimal Designs for Nonlinear Models via ICA
ICBioMark Data-Driven Design of Targeted Gene Panels for
Estimating Immunotherapy Biomarkers
ICC Facilitating Estimation of the Intraclass
Correlation Coefficient
ICC.Sample.Size Calculation of Sample Size and Power for ICC
ICCDesign Intraclass Correlation Coefficient (ICC)
Design, Calculation and Interactive 'shiny'
Toolkit
ICCbin Facilitates Clustered Binary Data Generation,
and Estimation of Intracluster Correlation
Coefficient (ICC) for Binary Data
ICD10gm Metadata Processing for the German Modification
of the ICD-10 Coding System
ICED IntraClass Effect Decomposition
ICEHmeasures The Equiplot Graph and Complex Inequality
Measures
ICEbox Individual Conditional Expectation Plot Toolbox
ICGE Estimation of Number of Clusters and
Identification of Atypical Units
ICGOR Fit Generalized Odds Rate Hazards Model with
Interval Censored Data
ICODS Data Analysis for ODS and Case-Cohort Designs
with Interval-Censoring
ICS Tools for Exploring Multivariate Data via
ICS/ICA
ICSClust Tandem Clustering with Invariant Coordinate
Selection
ICSKAT Interval-Censored Sequence Kernel Association
Test
ICSNP Tools for Multivariate Nonparametrics
ICSOutlier Outlier Detection Using Invariant Coordinate
Selection
ICSS ICSS Algorithm by Inclan/Tiao (1994)
ICSShiny ICS via a Shiny Application
ICSsmoothing Data Smoothing by Interpolating Cubic Splines
ICV Indirect Cross-Validation (ICV) for Kernel
Density Estimation
ICcalib Cox Model with Interval-Censored Starting Time
of a Covariate
ICcforest An Ensemble Method for Interval-Censored
Survival Data
ICglm Information Criteria for Generalized Linear
Regression
ICompELM Independent Component Analysis Based Extreme
Learning Machine
ICsurv Semiparametric Regression Analysis of
Interval-Censored Data
ICtest Estimating and Testing the Number of
Interesting Components in Linear Dimension
Reduction
ICvectorfields Vector Fields from Spatial Time Series of
Population Abundance
IDCard Update Chinese ID Card Number to Eighteen
Digits
IDE Integro-Difference Equation Spatio-Temporal
Models
IDEAFilter Agnostic, Idiomatic Data Filter Module for
Shiny
IDEATools Individual and Group Farm Sustainability
Assessments using the IDEA4 Method
IDF Estimation and Plotting of IDF Curves
IDLFM Individual Dynamic Latent Factor Model
IDMIR Identification of Dysregulated MiRNAs Based on
MiRNA-MiRNA Interaction Network
IDPSurvival Imprecise Dirichlet Process for Survival
Analysis
IDPmisc 'Utilities of Institute of Data Analyses and
Process Design (www.zhaw.ch/idp)'
IDSL.CSA Composite Spectra Analysis (CSA) for
High-Resolution Mass Spectrometry Analyses
IDSL.FSA Fragmentation Spectra Analysis (FSA)
IDSL.IPA Intrinsic Peak Analysis (IPA) for HRMS Data
IDSL.MXP Parser for mzML, mzXML, and netCDF Files (Mass
Spectrometry Data)
IDSL.NPA Nominal Peak Analysis (NPA)
IDSL.SUFA Simplified UFA
IDSL.UFA United Formula Annotation (UFA) for HRMS Data
Processing
IDSL.UFAx Exhaustive Chemical Enumeration for United
Formula Annotation
IDSpatialStats Estimate Global Clustering in Infectious
Disease
IDetect Isolate-Detect Method for Multiple Change-Point
Detection
IDmeasurer Assessment of Individual Identity in Animal
Signals
IDmining Intrinsic Dimension for Data Mining
IETD Inter-Event Time Definition
IFC Tools for Imaging Flow Cytometry
IFMCDM Intuitionistic Fuzzy Multi-Criteria Decision
Making Methods
IFTPredictor Predictions Using Item-Focused Tree Models
IGC.CSM Simulate Impact of Different Urban Policies
Through a General Equilibrium Model
IGST Informative Gene Selection Tool
IHSEP Inhomogeneous Self-Exciting Process
IHW Independent Hypothesis Weighting
IIProductionUnknown Analyzing Data Through of Percentage of
Importance Indice (Production Unknown) and Its
Derivations
IIS Datasets to Accompany Wolfe and Schneider -
Intuitive Introductory Statistics
IIVpredictor Modeling Within Individual Variability as
Predictor
IJSE Infinitesimal Jackknife Standard Errors for
'brms' Models
ILORA Indian Alien Flora Information Database
Retrieval
ILRCM Convert Irregular Longitudinal Data to Regular
Intervals and Perform Clustering
ILS Interlaboratory Study
ILSAmerge Merge and Download International Large-Scale
Assessments (ILSA) Data
ILSAstats Statistics for International Large-Scale
Assessments (ILSA)
ILSM Analyze Interconnection Structure of Tripartite
Interaction Networks
IMD Index of Multiple Deprivation Data for the UK
IMIFA Infinite Mixtures of Infinite Factor Analysers
and Related Models
IMIX Gaussian Mixture Model for Multi-Omics Data
Integration
IMP Interactive Model Performance Evaluation
IMPACT The Impact of Items
IMTest Information Matrix Test for Generalized Partial
Credit Models
IMak Item Maker
IMmailgun Send Emails using 'Mailgun'
INCVCommunityDetection
Inductive Node-Splitting Cross-Validation for
Community Detection
INFOSET Computing a New Informative Distribution Set of
Asset Returns
INLA Full Bayesian Analysis of Latent Gaussian
Models using Integrated Nested Laplace
Approximations
INLABMA Bayesian Model Averaging with INLA
INLAjoint Multivariate Joint Modeling for Longitudinal
and Time-to-Event Outcomes with 'INLA'
INLAspacetime Spatial and Spatio-Temporal Models using 'INLA'
INLAtools Functionalities for the 'INLA' Package
INLAvaan Approximate Bayesian Latent Variable Analysis
INQC Quality Control of Climatological Daily Time
Series
INTRIGUE Quantify and Control Reproducibility in
High-Throughput Experiments
INetTool Integration Network
IOBR Immune Oncology Biological Research
IOLS Iterated Ordinary Least Squares Regression
IPAG Tools for IPAG Courses
IPCWK Kendall's Tau Partial Corr. for Survival Trait
and Biomarkers
IPDfromKM Map Digitized Survival Curves Back to
Individual Patient Data
IPEC Root Mean Square Curvature Calculation
IPEDS Data from the Integrated Post-Secondary
Education Data System
IPEDSuploadables Transforms Institutional Data into Text Files
for IPEDS Automated Import/Upload
IPLGP Identification of Parental Lines via Genomic
Prediction
IPMRF Intervention in Prediction Measure for Random
Forests
IPMbook Functions and Data for the Book 'Integrated
Population Models'
IPPP Inhomogeneous Poisson Point Processes
IPV Item Pool Visualization
IPWboxplot Adapted Boxplot to Missing Observations
IQCC Improved Quality Control Charts
IRISMustangMetrics Statistics and Metrics for Seismic Data
IRISSeismic Classes and Methods for Seismic Data Analysis
IRR2FPR Computing False Positive Rate from Inter-Rater
Reliability
IRTBEMM Family of Bayesian EMM Algorithm for Item
Response Models
IRTM Theory-Driven Item Response Theory (IRT) Models
IRTShiny Item Response Theory via Shiny
IRTest Parameter Estimation of Item Response Theory
with Estimation of Latent Distribution
IRanges Foundation of integer range manipulation in
Bioconductor
IRdisplay 'Jupyter' Display Machinery
IRexamples Collection of Practical Institutional Research
Examples and Tutorials
IRkernel Native R Kernel for the 'Jupyter Notebook'
IRon Solving Imbalanced Regression Tasks
ISAR Introduction to Sports Analytics using R (ISAR)
Data
ISCA Compare Heterogeneous Social Groups
ISCAM Companion to the Book "Investigating
Statistical Concepts, Applications, and
Methods"
ISCO08ConveRsions Converts ISCO-08 to Job Prestige Scores,
ISCO-88 and Job Name
ISEtools Ion Selective Electrodes Analysis Methods
ISLR Data for an Introduction to Statistical
Learning with Applications in R
ISLR2 Introduction to Statistical Learning, Second
Edition
ISM Interpretive Structural Modelling (ISM)
ISMtools Interpretive Structural Modelling Analysis
Tools
ISO11784Tools ISO11784 PIT Tag ID Format Converters
ISO6976.2016 Calorific Values and Properties of Natural Gas
per ISO 6976:2016
ISOcodes Selected ISO Codes
ISOweek Week of the year and weekday according to ISO
8601
ISPYARDSWinProbabilityGSDesign
Trial Design in Respiratory Disease Based on
the Win Probability
ISR The Iterated Score Regression-Based Estimation
ISRaD Tools and Data for the International Soil
Radiocarbon Database
ISS Isotonic Subgroup Selection
ISwR Introductory Statistics with R
ITNr Analysis of the International Trade Network
IVCor A Robust Integrated Variance Correlation
IVDML Double Machine Learning with Instrumental
Variables and Heterogeneity
IVPP Invariance Partial Pruning Test
IVYplot Produces an IVY Plot (Similar to Dot Plot)
with/without Frequencies
IceSat2R 'ICESat-2' Altimeter Data using R
Icens NPMLE for Censored and Truncated Data
IgAScores Score Taxon-Level IgA Binding in IgA-Seq
Experiments
IgorR Read Binary Files Saved by 'Igor Pro'
(Including 'Neuromatic' Data)
ImCluster Efficiency of Cluster Sampling for Crop Surveys
ImFoR Non-Linear Height Diameter Models for Forestry
ImML Machine Learning Algorithms Fitting and
Validation for Forestry
ImNN Neural Networks for Predicting Volume of Forest
Trees
ImVol Volume Prediction of Trees Using Linear and
Nonlinear Allometric Equations
Immigrate Iterative Max-Min Entropy Margin-Maximization
with Interaction Terms for Feature Selection
ImmuneSigR Immune Cell Signature Retrieval and Single-Cell
Scoring
Immutables Fast and Functional Data Structures
Imneuron AI Powered Neural Network Solutions for
Regression Tasks
ImpShrinkage Improved Shrinkage Estimations for Multiple
Linear Regression
ImpactEffectsize Calculation and Visualization of the Impact
Effect Size Measure
ImportExport Import and Export Data
ImportanceIndice Analyzing Data Through of Percentage of
Importance Indice and Its Derivations
ImputeLongiCovs Longitudinal Imputation of Categorical
Variables via a Joint Transition Model
ImputeRobust Robust Multiple Imputation with Generalized
Additive Models for Location Scale and Shape
InPosition Inference Tests for ExPosition
InSilicoVA Probabilistic Verbal Autopsy Coding with
'InSilicoVA' Algorithm
IncDTW Incremental Calculation of Dynamic Time Warping
IncidencePrevalence Estimate Incidence and Prevalence using the
OMOP Common Data Model
IncomPair Comparison of Means for the Incomplete Paired
Data
IndGenErrors Tests of Independence Between Innovations of
Generalized Error Models
IndTestPP Tests of Independence and Analysis of
Dependence Between Point Processes in Time
IndepTest Nonparametric Independence Tests Based on
Entropy Estimation
IndexConstruction Index Construction for Time Series Data
IndexNumR Index Number Calculation
IndexNumber Index Numbers in Social Sciences
IndexNumberTools Working with Index Numbers
IndexWizard Constructing and Analyzing Complex Selection
Indices
IndiAPIs Access Indian Data via Public APIs and Curated
Datasets
Indicator Composite 'Indicator' Construction and
Imputation Data
IndonesiAPIs Access Indonesian Data via Public APIs and
Curated Datasets
InferenceSMR Inference About the Standardized Mortality
Ratio when Evaluating the Effect of a Screening
Program on Survival
InfiniumPurify Estimate and Account for Tumor Purity in Cancer
Methylation Data Analysis
Inflation Core Inflation
InflectSSP Melt Curve Fitting and Melt Shift Analysis
Inflongitudinal Detecting Influential Subjects in Longitudinal
Data
InfluenceBorrowing Adaptive Influence-Based Borrowing for Hybrid
Control Trials
Information Data Exploration with Information Theory
(Weight-of-Evidence and Information Value)
InformativeCensoring Multiple Imputation for Informative Censoring
Infusion Inference Using Simulation
InjurySeverityScore Translate ICD-9 into Injury Severity Score
Inquilab Dissipation Kinetics Analysis, Half Life
Period, Rate Constant, Plots
InsectLabelR Create Labels for Insect in Collection
InspectChangepoint High-Dimensional Changepoint Estimation via
Sparse Projection
InspectionPlanner Phytosanitary Inspection Sampling Planner
InsuSensCalc Insulin Sensitivity Indices Calculator
IntCal Radiocarbon Calibration Curves
IntNMF Integrative Clustering of Multiple Genomic
Dataset
IntegratedJM Joint Modeling of the Gene-Expression and
Bioassay Data, Taking Care of the Effect Due to
a Fingerprint Feature
InterNL Time Series Intervention Model Using Non-Linear
Function
InterSIM Simulation of Inter-Related Genomic Datasets
InterVA4 Replicate and Analyse 'InterVA4'
InterVA5 Replicate and Analyse 'InterVA5'
InteractionPoweR Power Analyses for Interaction Effects in
Cross-Sectional Regressions
InteractionSet Base Classes for Storing Genomic Interaction
Data
InteractiveComplexHeatmap
Make Interactive Complex Heatmaps
Interatrix Compute Chi-Square Measures with Corrections
InterfaceqPCR GUI to Analyse qPCR Results after PMA Treatment
or not
InterpolateR A Comprehensive Toolkit for Fast and Efficient
Spatial Interpolation
InterpretMSSpectrum Interpreting High Resolution Mass Spectra
IntervalQuestionStat Tools to Deal with Interval-Valued Responses in
Questionnaires
IntervalSurgeon Operating on Integer-Bounded Intervals
InvStablePrior Inverse Stable Prior for Widely-Used
Exponential Models
InvariantCausalPrediction
Invariant Causal Prediction
InvasionCorrection Invasion Correction
IrishDirectorates A Dynamic Bipartite Latent Space Model to
Analyse Irish Companies' Boards from 2003 to
2013
IrregLong Analysis of Longitudinal Data with Irregular
Observation Times
Iscores Proper Scoring Rules for Missing Value
Imputation
IsingFit Fitting Ising Models Using the ELasso Method
IsingSampler Sampling Methods and Distribution Functions for
the Ising Model
Isinglandr Landscape Construction and Simulation for Ising
Networks
Iso Functions to Perform Isotonic Regression
IsoCor Analyze Isotope Ratios in a 'Shiny'-App
IsoMemo Retrieve Data using the 'IsoMemo' API
IsoSpecR The IsoSpec Algorithm
IsoplotR Statistical Toolbox for Radiometric
Geochronology
IsoplotRgui Web Interface to 'IsoplotR'
IsoriX Isoscape Computation and Inference of Spatial
Origins using Mixed Models
IssueTrackeR List Things to Do
ItemRest Automated Item Removal Strategies for
Exploratory Factor Analysis
IterativeHardThresholding
Iterative Hard Thresholding Extensions to
Cyclops
IxPopDyMod Framework for Tick Population and Infection
Modeling
JADE Blind Source Separation Methods Based on Joint
Diagonalization and Some BSS Performance
Criteria
JANE Just Another Latent Space Network Clustering
Algorithm
JATSdecoder A Metadata and Text Extraction and Manipulation
Tool Set
JBrowseR An R Interface to the JBrowse 2 Genome Browser
JCRImpactFactor Journal Citation Reports ('JCR') Impact Factor
by 'Clarivate' 'Analytics'
JDCruncheR 'JDemetra+' Quality Report Generator
JFE Tools for Analyzing Time Series Data of Just
Finance and Econometrics
JFM Rock Mass Structural Analysis from 3D Mesh of
Point Cloud
JGR Java GUI for R
JICO Joint and Individual Regression
JLPM Joint Latent Process Models
JM Joint Modeling of Longitudinal and Survival
Data
JM4QTN Joint Mapping for Quantitative Trait Loci
JMH Joint Model of Heterogeneous Repeated Measures
and Survival Data
JMI Jackknife Mutual Information
JMbayes Joint Modeling of Longitudinal and
Time-to-Event Data under a Bayesian Approach
JMbayes2 Extended Joint Models for Longitudinal and
Time-to-Event Data
JMbdirect Joint Model for Longitudinal and Multiple Time
to Events Data
JMdesign Joint Modeling of Longitudinal and Survival
Data - Power Calculation
JNplots Visualize Outputs from the 'Johnson-Neyman'
Technique
JOPS Practical Smoothing with P-Splines
JPEN Covariance and Inverse Covariance Matrix
Estimation Using Joint Penalty
JPSurv Joinpoint Model for Relative and Cause-Specific
Survival
JSDNE Estimating the Age using Auricular Surface by
DNE
JSM Semiparametric Joint Modeling of Survival and
Longitudinal Data
JSUparameters Estimate Parameters of the Best-Fitting
JohnsonSU Distribution
JSconsole A 'RStudio' Addin to Send 'JavaScript' Code to
the 'V8' Console
JSmediation Mediation Analysis Using Joint Significance
JSparO Joint Sparse Optimization via Proximal Gradient
Method for Cell Fate Conversion
JUMP Replicability Analysis of High-Throughput
Experiments
JWileymisc Miscellaneous Utilities and Functions
JacobiEigen Classical Jacobi Eigenvalue Algorithm
Jacquard Estimation of Jacquard's Genetic Identity
Coefficients
JamendoR Access to 'Jamendo' API
JapanAPIs Access Japanese Data via Public APIs and
Curated Datasets
JavaGD Java Graphics Device
Jaya Gradient-Free Optimization Algorithm for Single
and Multi-Objective Problems
Jcvrisk Risk Calculator for Cardiovascular Disease in
Japan
Jdmbs Monte Carlo Option Pricing Algorithms for Jump
Diffusion Models with Correlational Companies
Jmisc Julian Miscellaneous Function
JoF Modelling and Simulating Judgments of Frequency
JoSAE Unit-Level and Area-Level Small Area Estimation
JointAI Joint Analysis and Imputation of Incomplete
Data
JointFPM A Parametric Model for Estimating the Mean
Number of Events
Julia Fractal Image Data Generator
JuliaCall Seamless Integration Between R and 'Julia'
JuliaConnectoR A Functionally Oriented Interface for
Integrating 'Julia' with R
JuliaFormulae Translate R Regression Model Formulae to
'Julia' Syntax
JumpDiffSim Jump Diffusion Simulation and Calibration for
Merton and Kou Models
JustifyAlpha Justifying Alpha Levels for Hypothesis Tests
K4PrestasiSiswa Student Achievement Data Files for TIMSS 2023
Grade 4
K4ProsesSiswa Student Process Data Files for TIMSS 2023 Grade
4
K4Sekolah School Context Data Files for TIMSS 2023 Grade
4
KCSKNNShiny K-Nearest Neighbour Classifier
KCSNBShiny Naive Bayes Classifier
KDEmcmc Kernel Density Estimation with a Markov Chain
Monte Carlo Sample
KEGGREST Client-side REST access to the Kyoto
Encyclopedia of Genes and Genomes (KEGG)
KEGGgraph KEGGgraph: A graph approach to KEGG PATHWAY in
R and Bioconductor
KEPTED Kernel-Embedding-of-Probability Test for
Elliptical Distribution
KFAS Kalman Filter and Smoother for Exponential
Family State Space Models
KFPCA Kendall Functional Principal Component Analysis
KFPLS Kernel Functional Partial Least Squares
KGode Kernel Based Gradient Matching for Parameter
Inference in Ordinary Differential Equations
KHQ Methods for Calculating 'KHQ' Scores and
'KHQ5D' Utility Index Scores
KINSIMU Panel Evaluation in Forensic Kinship Analysis
KLINK Kinship Analysis with Linked Markers
KLexp Kernel_lasso Expansion
KMD Kernel Measure of Multi-Sample Dissimilarity
KMEANS.KNN KMeans and KNN Clustering Package
KMLtoSHAPE Preserving Attribute Values: Converting KML to
Shapefile
KMsurv Datasets from Klein and Moeschberger (1997),
Survival Analysis
KMunicate KMunicate-Style Kaplan–Meier Plots
KNNShiny Interactive Document for Working with KNN
Analysis
KODAMA Knowledge Discovery by Accuracy Maximization
KOFM Test the Kronecker Product Structure in Tensor
Factor Models
KOGMWU Functional Summary and Meta-Analysis of Gene
Expression Data
KOLaide Pick and Plot Key Opinion Leaders from a
Network Given Constraints
KONPsurv KONP Tests: Powerful K-Sample Tests for
Right-Censored Data
KOR.addrlink Matching Address Data to Reference Index
KPC Kernel Partial Correlation Coefficient
KQM K Quantiles Medoids (KQM) Clustering
KRIS Keen and Reliable Interface Subroutines for
Bioinformatic Analysis
KRLS Kernel-Based Regularized Least Squares
KRMM Kernel Ridge Mixed Model
KRONX Clock of Regimes for Regime-Switching Fragility
Analysis
KSA Retained Component Criterion for Principal
Component Analysis
KSEAapp Kinase-Substrate Enrichment Analysis
KSIC Korea Standard Industrial Classification (KSIC)
KSPM Kernel Semi-Parametric Models
KScorrect Lilliefors-Corrected Kolmogorov-Smirnov
Goodness-of-Fit Tests
KSgeneral Computing P-Values of the One-Sample K-S Test
and the Two-Sample K-S and Kuiper Tests for
(Dis)Continuous Null Distribution
KTensorGraphs Co-Tucker3 Analysis of Two Sequences of
Matrices
KWCChangepoint Robust Changepoint Detection for Functional and
Multivariate Data
KWELA Hierarchical Adaptive 'RT-QuIC' Classification
for Complex Matrices
KappaGUI An R-Shiny Application for Calculating Cohen's
and Fleiss' Kappa
Karen Kalman Reaction Networks
KarsTS An Interface for Microclimate Time Series
Analysis
KbMvtSkew Khattree-Bahuguna's Univariate and Multivariate
Skewness
Kcop Smooth Test for Equality of Copulas and
Clustering Multivariate
Kendall Kendall Rank Correlation and Mann-Kendall Trend
Test
Keng Knock Errors Off Nice Guesses
KernSmoothIRT Nonparametric Item Response Theory
KernelKnn Kernel k Nearest Neighbors
Kernelheaping Kernel Density Estimation for Heaped and
Rounded Data
Keyboard Bayesian Designs for Early Phase Clinical
Trials
Kifidi Summary Table and Means Plots
KinMixLite Inference About Relationships from DNA Mixtures
KinformR Relationship-Informed Pedigree and Variant
Scoring
KingCountyHouses Data on House Sales in King County WA
Kira Machine Learning
Kmedians K-Medians
KnapsackSampling Generate Feasible Samples of a Knapsack Problem
KneeArrower Finds Cutoff Points on Knee Curves
KnockoffHybrid Hybrid Analysis of Population and Trio Data
with Knockoff Statistics for FDR Control
KnockoffTrio GWAS with Trio and Duo Data using Knockoff
Statistics for FDR Control
KnowBR Discriminating Well Surveyed Spatial Units from
Exhaustive Biodiversity Databases
KoboconnectR Download Data from Kobotoolbox to R
Kpart Cubic Spline Fitting with Knot Selection
KrakenR Comprehensive R Interface for Accessing Kraken
Cryptocurrency Exchange REST API
KraljicMatrix A Quantified Implementation of the Kraljic
Matrix
KrigInv Kriging-Based Inversion for Deterministic and
Noisy Computer Experiments
Kurt Performs Kurtosis-Based Statistical Analyses
L0Learn Fast Algorithms for Best Subset Selection
L0TFinv A Splicing Approach to the Inverse Problem of
L0 Trend Filtering
L0cpt Change Point Detection with L0 Penalty
L0ggm Smooth L0 Penalty Approximations for Gaussian
Graphical Models
L1centrality Graph/Network Analysis Based on L1 Centrality
L1pack Routines for L1 Estimation
L2DensityGoFtest Density Goodness-of-Fit Test
L2E Robust Structured Regression via the L2
Criterion
L2hdchange L2 Inference for Change Points in
High-Dimensional Time Series
LA Lioness Algorithm (LA)
LABTNSCPSS Calculation of Comorbidity and Frailty Scores
LAD Derive Leaf Angle Distribution (LAD) from
Measured Leaf Inclination Angles
LAGOSNE Interface to the Lake Multi-Scaled Geospatial
and Temporal Database
LAIr Converting NDVI to LAI of Field, Proximal and
Satellite Data
LAM Some Latent Variable Models
LARisk Estimation of Lifetime Attributable Risk of
Cancer from Radiation Exposure
LATERmodel Linear Approach to Threshold with Ergodic Rate
for Reaction Times
LAWBL Latent (Variable) Analysis with Bayesian
Learning
LBBNN Latent Binary Bayesian Neural Networks Using
'torch'
LBDiscover Literature-Based Discovery Tools for Biomedical
Research
LBI Likelihood Based Inference
LBPG The Length-Biased Power Garima Distribution
LBSPR Length-Based Spawning Potential Ratio
LCAextend Latent Class Analysis (LCA) with Familial
Dependence in Extended Pedigrees
LCCR Latent Class Capture-Recapture Models
LCCkNN Adaptive k-Nearest Neighbor Classifier Based on
Local Curvature Estimation
LCFdata Data sets for package
``LMERConvenienceFunctions''
LCMCR Bayesian Non-Parametric Latent-Class
Capture-Recapture
LCMSQA Liquid Chromatography/Mass Spectrometry (LC/MS)
Quality Assessment
LCPA A General Framework for Latent Classify and
Profile Analysis
LDAShiny Interactive Topic Modeling and Bibliometric
Analysis via Shiny
LDATS Latent Dirichlet Allocation Coupled with Time
Series Analyses
LDATree Oblique Classification Trees with Uncorrelated
Linear Discriminant Analysis Splits
LDAandLDAS Linkage Disequilibrium of Ancestry (LDA) and
LDA Score (LDAS)
LDAcoop Analysis of Data from Limiting Dilution Assay
(LDA) with or without Cellular Cooperation
LDAvis Interactive Visualization of Topic Models
LDM Testing Hypotheses About the Microbiome using
the Linear Decomposition Model
LDNN Longitudinal Data Neural Network
LDRTools Tools for Linear Dimension Reduction
LDcorSV Linkage Disequilibrium Corrected by the
Structure and the Relatedness
LDlinkR Calculating Linkage Disequilibrium (LD) in
Human Population Groups of Interest
LEA LEA: an R package for Landscape and Ecological
Association Studies
LEAVcore Constitution of Core Collections using Length
of Encoded Attribute Values
LEGIT Latent Environmental & Genetic InTeraction
(LEGIT) Model
LEdecomp Decompose Life Expectancy by Age (and Cause)
LFApp Shiny Apps for Lateral Flow Assays
LFDR.MLE Estimation of the Local False Discovery Rates
by Type II Maximum Likelihood Estimation
LFDR.MME Estimating Local False Discovery Rates Using
the Method of Moments
LFDREmpiricalBayes Estimating Local False Discovery Rates Using
Empirical Bayes Methods
LFM Laplace Factor Model Analysis and Evaluation
LGCU Implementation of Learning Gamma CUSUM
(Cumulative Sum) Control Charts
LGDtoolkit Collection of Tools for LGD Rating Model
Development
LGEWIS Tests for Genetic Association/Gene-Environment
Interaction in Longitudinal Studies
LGRF Set-Based Tests for Genetic Association in
Longitudinal Studies
LHD Latin Hypercube Designs (LHDs)
LIC The LIC Criterion for Optimal Subset Selection
LINselect Selection of Linear Estimators
LISTO Performing Comprehensive Overlap Assessments
LJexm Extract, Convert, and Merge 'pdf' Files from
'zip' Files
LJmp3converter Convert Video Files to 'mp3' Format, Merge or
Trim Audio Files using 'FFmpeg'
LKT Logistic Knowledge Tracing
LLM Logit Leaf Model Classifier for Binary
Classification
LLMAgentR Language Model Agents in R for AI Workflows and
Research
LLMR Interface for Large Language Model APIs in R
LLMTranslate 'shiny' App for TRAPD/ISPOR Survey Translation
with LLMs
LLMing Large Language Model (LLM) Tools for
Psychological Text Analysis
LLSR Data Analysis of Liquid-Liquid Systems using R
LMD A Self-Adaptive Approach for Demodulating
Multi-Component Signal
LMERConvenienceFunctions
Model Selection and Post-Hoc Analysis for
(G)LMER Models
LMMsolver Linear Mixed Models with Sparse Matrix Methods
and Smoothing
LMMstar Repeated Measurement Models for Discrete Times
LMN Inference for Linear Models with Nuisance
Parameters
LMPdata Easy Import of the EU Labour Market Policy Data
LMest Generalized Latent Markov Models
LMfilteR Filter Methods for Parameter Estimation in
Linear and Non Linear Regression Models
LMoFit Advanced L-Moment Fitting of Distributions
LNIRT LogNormal Response Time Item Response Theory
Models
LNPar Estimation and Testing for a Lognormal-Pareto
Mixture
LOCOM2 A Logistic Regression Model for Testing
Microbial Differential Abundance
LOCUS Low-Rank Decomposition of Brain Connectivity
Matrices with Uniform Sparsity
LOGAN Log File Analysis in International Large-Scale
Assessments
LOMAR Localization Microscopy Data Analysis
LOPART Labeled Optimal Partitioning
LOST Missing Morphometric Data Simulation and
Estimation
LPBkg Detecting New Signals under Background
Mismodelling
LPCM Local Principal Curve Methods
LPDynR Land Productivity Dynamics Indicator
LPM Linear Parametric Models Applied to
Hydrological Series
LPStimeSeries Learned Pattern Similarity and Representation
for Time Series
LPmerge Merging Linkage Maps by Linear Programming
LREP Estimate and Test Exponential vs. Pareto
Distributions
LRMF3 Low Rank Matrix Factorization S3 Objects
LRMiss Linear Regression with Missing Data
LRQVB Low Rank Correction Quantile Variational
Bayesian Algorithm for Multi-Source
Heterogeneous Models
LRTesteR Likelihood Ratio Tests and Confidence Intervals
LS2W Locally Stationary Two-Dimensional Wavelet
Process Estimation Scheme
LS2Wstat A Multiscale Test of Spatial Stationarity for
LS2W Processes
LSAMBA Lasso-SAMBA Algorithm
LSAfun Applied Latent Semantic Analysis (LSA)
Functions
LSAmitR Daten, Beispiele und Funktionen zu 'Large-Scale
Assessment mit R'
LSD Lots of Superior Depictions
LSDinterface Interface Tools for 'LSD' Simulation Results
Files
LSDirf Impulse-Response Function Analysis for
Agent-Based Models
LSDsensitivity Sensitivity Analysis Tools for 'LSD'
Simulations
LSE Constrained Least Squares and Generalized QR
Factorization
LSEbootLS Bootstrap Methods for Regression Models with
Locally Stationary Errors
LSMjml Fitting Latent Space Item Response Models using
Joint Maximum Likelihood Estimation
LSMonteCarlo American options pricing with Least Squares
Monte Carlo method
LSPFP Lysate and Secretome Peptide Feature Plotter
LSRS Land Surface Remote Sensing
LST Land Surface Temperature Retrieval for Landsat
8
LSTMfactors Determining the Number of Factors in
Exploratory Factor Analysis by LSTM
LSTS Locally Stationary Time Series
LSTbook Data and Software for "Lessons in Statistical
Thinking"
LSVAR Estimation of Low Rank Plus Sparse Structured
Vector Auto-Regressive (VAR) Model
LSWPlib Simulation and Spectral Estimation of Locally
Stationary Wavelet Packet Processes
LSX Semi-Supervised Algorithm for Document Scaling
LTASR Functions to Replicate the Center for Disease
Control and Prevention's 'LTAS' Software in R
LTCDM Latent Transition Cognitive Diagnosis Model
with Covariates
LTFGRS Implementation of Several Phenotype-Based
Family Genetic Risk Scores
LTFHPlus Implementation of LT-FH++
LTPDvar LTPD and AOQL Plans for Acceptance Sampling
Inspection by Variables
LTRCtrees Survival Trees to Fit Left-Truncated and
Right-Censored and Interval-Censored Survival
Data
LUCIDus LUCID with Multiple Omics Data
LVGP Latent Variable Gaussian Process Modeling with
Qualitative and Quantitative Input Variables
LWFBrook90R Simulate Evapotranspiration and Soil Moisture
with the SVAT Model LWF-Brook90
LZeroSpikeInference Exact Spike Train Inference via L0 Optimization
LaF Fast Access to Large ASCII Files
LaMa Fast Numerical Maximum Likelihood Estimation
for Latent Markov Models
LabApplStat Miscellaneous Scripts from the Data Science
Laboratory (UCPH)
LabRS Laboratorio di Ricerca Sociale con R
LabourMarketAreas Identification, Tuning, Visualisation and
Analysis of Labour Market Areas
LactCurveModels Lactation Curve Model Fitting for Dairy Animals
LadderFuelsR Automated Tool for Vertical Fuel Continuity
Analysis using Airborne Laser Scanning Data
LagSequential Lag-Sequential Categorical Data Analysis
Lahman Sean 'Lahman' Baseball Database
LakeMetabolizer Tools for the Analysis of Ecosystem Metabolism
LambertW Probabilistic Models to Analyze and Gaussianize
Heavy-Tailed, Skewed Data
LandComp Analysing Landscape Composition and Structure
at Multiple Scales
Landmarking Analysis using Landmark Models
Langevin Langevin Analysis in One and Two Dimensions
LangevinFlow Langevin Diffusion Samplers with a C++ Backend
LaplacesDemon Complete Environment for Bayesian Inference
Largevars Testing Large VARs for the Presence of
Cointegration
LassoBacktracking Modelling Interactions in High-Dimensional Data
with Backtracking
LassoHiDFastGibbs Fast High-Dimensional Gibbs Samplers for
Bayesian Lasso Regression
LassoNet 3CoSE Algorithm
LassoSIR Sparsed Sliced Inverse Regression via Lasso
Latamverse Latin American Data via 'RESTful' APIs and
Curated Datasets
LatentBMA Bayesian Model Averaging for Univariate Link
Latent Gaussian Models
Laterality Functions to Calculate Common Laterality
Statistics in Primatology
LatticeDesign Lattice-Based Space-Filling Designs
LatticeKrig Multi-Resolution Kriging Based on Markov Random
Fields
LeArEst Border and Area Estimation of Data Measured
with Additive Error
LeMaRns Length-Based Multispecies Analysis by Numerical
Simulation
LePage LePage Type Tests
LeadSense Medtronic Brain Sense Local Field Potencial
Analysis
LeafArea Rapid Digital Image Analysis of Leaf Area
LearnBayes Functions for Learning Bayesian Inference
LearnClust Learning Hierarchical Clustering Algorithms
LearnGeom Learning Plane Geometry
LearnNonparam 'R6'-Based Flexible Framework for Permutation
Tests
LearnPCA Functions, Data Sets and Vignettes to Aid in
Learning Principal Components Analysis (PCA)
LearnSL Learn Supervised Classification Methods Through
Examples and Code
LearnVizLMM Learning and Communicating Linear Mixed Models
Without Data
LearningRlab Statistical Learning Functions
LearningStats Elemental Descriptive and Inferential
Statistics
LeaveOutKSS Leave-Out Variance Component Estimation for
Two-Way Fixed Effects Models
LexFindR Find Related Items and Lexical Dimensions in a
Lexicon
LexisNexisTools Working with Files from 'LexisNexis'
LexisPlotR Plot Lexis Diagrams for Demographic Purposes
LiblineaR Linear Predictive Models Based on the LIBLINEAR
C/C++ Library
Libra Linearized Bregman Algorithms for Generalized
Linear Models
LifeHist Life History Models of Individuals
LifeInsuranceContracts
Framework for Traditional Life Insurance
Contracts
LifeInsureR Modelling Traditional Life Insurance Contracts
LifeTableBuilder Interactive 'shiny' Application for
Constructing Life Tables
LifeTableFertility 'shiny' Application for Life Table and
Fertility Analysis
LifemapR Data Visualisation on 'Lifemap' Tree
Lifertable Life and Fertility Tables Specially for Insects
LiftTest A Bootstrap Proportion Test for Brand Lift
Testing
LightFitR Design Complex Light Regimes
LightLogR Process Data from Wearable Light Loggers and
Optical Radiation Dosimeters
LikertEZ Easy Analysis and Visualization of Likert Scale
Data
LikertMakeR Synthesise and Correlate Likert Scale and
Rating-Scale Data Based on Summary Statistics
LilRhino For Implementation of Feed Reduction, Learning
Examples, NLP and Code Management
LimnoPalettes A Limnology Themed Palette Generator
LinCal Static Univariate Frequentist and Bayesian
Linear Calibration
LinRegInteractive Interactive Interpretation of Linear Regression
Models
LindenmayeR Functions to Explore L-Systems (Lindenmayer
Systems)
LindleyPowerSeries Lindley Power Series Distribution
LinearRegressionMDE Minimum Distance Estimation in Linear
Regression Model
Linkage Clustering Communication Networks Using the
Stochastic Topic Block Model Through Linkage.fr
LinkedGASP Linked Emulator of a Coupled System of
Simulators
LinkedMatrix Column-Linked and Row-Linked Matrices
Linnorm Linear model and normality based normalization
and transformation method (Linnorm)
LipidMS Lipid Annotation for LC-MS/MS DDA or DIA Data
LipidomicsR Elegant Tools for Processing and Visualization
of Lipidomics Data
LipinskiFilters Computes and Visualize Lipinski's Parameters
LitFetchR Automatically Fetching References Metadata from
Literature Databases
Lmoments L-Moments and Quantile Mixtures
LncFinder LncRNA Identification and Analysis Using
Heterologous Features
LoBrA Generalized Spline Mixed Effect Models for
Longitudinal Breath Data
LoTTA Bayesian Inference in Regression Discontinuity
Designs
LocKer Locally Sparse Estimator of Generalized Varying
Coefficient Model for Asynchronous Longitudinal
Data
LocaTT Geographically-Conscious Taxonomic Assignment
for Metabarcoding
LocalControl Nonparametric Methods for Generating High
Quality Comparative Effectiveness Evidence
LocalCop Local Likelihood Inference for Conditional
Copula Models
Lock5Data Datasets for "Statistics: UnLocking the Power
of Data"
LogConcDEAD Log-Concave Density Estimation in Arbitrary
Dimensions
LogRegEquiv Logistic Regression Equivalence
LogicForest Logic Forest
LogicReg Logic Regression
LogisticCopula A Copula Based Extension of Logistic Regression
LogisticCurveFitting Logistic Curve Fitting by Rhodes Method
LogisticEnsembles Automatically Runs 18 Logistic Models-14
Individual Logistic Models and 4 Ensembles of
Models
LogisticRCI Linear and Logistic Regression-Based Reliable
Change Index
LongCART Recursive Partitioning for Longitudinal Data
and Right Censored Data Using Baseline
Covariates
LongDat A Tool for 'Covariate'-Sensitive Longitudinal
Analysis on 'omics' Data
LongDecompHE Longitudinal Decomposition of Health Expectancy
by Age and Cause
LoopAnalyst A Collection of Tools to Conduct Levins' Loop
Analysis
LoopDetectR Comprehensive Feedback Loop Detection in ODE
Models
LoopRig Integration and Analysis of Chromatin Loop Data
LorMe Lightweight One-Line Resolving Microbial
Ecology Program
LorenzRegression Lorenz and Penalized Lorenz Regressions
LowRankQP Low Rank Quadratic Programming
LqG Robust Group Variable Screening Based on
Maximum Lq-Likelihood Estimation
Luminescence Comprehensive Luminescence Dating Data Analysis
M2SMF Multi-Modal Similarity Matrix Factorization for
Integrative Multi-Omics Data Analysis
M2SMJF Multi-Modal Similarity Matrix Joint
Factorization
M3 Reading M3 Files
M3C Monte Carlo Reference-based Consensus
Clustering
M3JF Multi-Modal Matrix Joint Factorization for
Integrative Multi-Omics Data Analysis
MACER Molecular Acquisition, Cleaning, and Evaluation
in R 'MACER'
MADMMplasso Multi Variate Multi Response ADMM with
Interaction Effects
MADtests Hypothesis Tests and Confidence Intervals for
Median Absolute Deviations
MAFLD Diagnosis of Metabolic Dysfunction Associated
Fatty Liver Disease
MAGEE Mixed Model Association Test for
GEne-Environment Interaction
MAGMA.R MAny-Group MAtching
MAGNAMWAR A Pipeline for Meta-Genome Wide Association
MAICtools Performing Matched-Adjusted Indirect
Comparisons (MAIC)
MAIHDA Multilevel Analysis of Individual Heterogeneity
and Discriminatory Accuracy
MAINT.Data Model and Analyse Interval Data
MAIVE Meta Analysis Instrumental Variable Estimator
MAKL Multiple Approximate Kernel Learning (MAKL)
MALDIquant Quantitative Analysis of Mass Spectrometry Data
MALDIquantForeign Import/Export Routines for 'MALDIquant'
MALDIrppa MALDI Mass Spectrometry Data Robust
Pre-Processing and Analysis
MAMS Designing Multi-Arm Multi-Stage Studies
MANOVA.RM Resampling-Based Analysis of Multivariate Data
and Repeated Measures Designs
MAP Multimodal Automated Phenotyping
MAPA Multiple Aggregation Prediction Algorithm
MAPCtools Multivariate Age-Period-Cohort (MAPC) Modeling
for Health Data
MARMoT Matching on Poset-Based Average Rank for
Multiple Treatments (MARMoT)
MARSANNhybrid MARS Based ANN Hybrid Model
MARSGWR A Hybrid Spatial Model for Capturing Spatially
Varying Relationships Between Variables in the
Data
MARSS Multivariate Autoregressive State-Space
Modeling
MARSSVRhybrid MARS SVR Hybrid
MASSExtra Some 'MASS' Enhancements
MASSTIMATE Body Mass Estimation Equations for Vertebrates
MAST Model-based Analysis of Single Cell
Transcriptomics
MAT Multidimensional Adaptive Testing
MATA Model-Averaged Tail Area (MATA) Confidence
Interval and Distribution
MATES Multi-View Aggregated Two Sample Tests
MAVE Methods for Dimension Reduction
MAZE Mediation Analysis for Zero-Inflated Mediators
MAd Meta-Analysis with Mean Differences
MAnorm2 Tools for Normalizing and Comparing ChIP-seq
Samples
MB The Use of Marginal Distributions in
Conditional Forecasting
MBA Multilevel B-Spline Approximation
MBAnalysis Multiblock Exploratory and Predictive Data
Analysis
MBBEFDLite Statistical Functions for the
Maxwell-Boltzmann-Bose-Einstein-Fermi-Dirac
(MBBEFD) Family of Distributions
MBC Multivariate Bias Correction of Climate Model
Outputs
MBCbook Companion Package for the Book "Model-Based
Clustering and Classification for Data Science"
MBESS The MBESS R Package
MBHdesign Spatial Designs for Ecological and
Environmental Surveys
MBMethPred Medulloblastoma Subgroups Prediction
MBNMAdose Dose-Response MBNMA Models
MBNMAtime Run Time-Course Model-Based Network
Meta-Analysis (MBNMA) Models
MBRM Mixed Regression Models with Generalized
Log-Gamma Random Effects
MBSGS Multivariate Bayesian Sparse Group Selection
with Spike and Slab
MBSP Multivariate Bayesian Model with Shrinkage
Priors
MBmca Nucleic Acid Melting Curve Analysis
MCARtest Optimal Nonparametric Testing of Missing
Completely at Random
MCAvariants Multiple Correspondence Analysis Variants
MCBackscattering Monte Carlo Simulation for Surface
Backscattering
MCCM Mixed Correlation Coefficient Matrix
MCI Multiplicative Competitive Interaction (MCI)
Model
MCID Estimating the Minimal Clinically Important
Difference
MCL Markov Cluster Algorithm
MCM Estimating and Testing Intergenerational Social
Mobility Effect
MCMC.qpcr Bayesian Analysis of qRT-PCR Data
MCMC4Extremes Posterior Distribution of Extreme Value Models
in R
MCMCglmm MCMC Generalised Linear Mixed Models
MCMCpack Markov Chain Monte Carlo (MCMC) Package
MCMCprecision Precision of Discrete Parameters in
Transdimensional MCMC
MCMCvis Tools to Visualize, Manipulate, and Summarize
MCMC Output
MCOE Creates New Folders and Loads Standard
Practices for Monterey County Office of
Education
MCPAN Multiple Comparisons Using Normal Approximation
MCPMod Design and Analysis of Dose-Finding Studies
MCPModBC Improved Inference in Multiple Comparison
Procedure – Modelling
MCPModGeneral A Supplement to the 'DoseFinding' Package for
the General Case
MCPModPack Simulation-Based Design and Analysis of
Dose-Finding Trials
MCPtests Multiples Comparisons Procedures
MCS Model Confidence Set Procedure
MCSim Determine the Optimal Number of Clusters
MCSimMod Working with 'MCSim' Models
MCTrend Monte Carlo Trend Analysis
MChtest Monte Carlo Hypothesis Tests with Sequential
Stopping
MCseqReplic Monte Carlo Simulations of Time Changes in
Sequences
MD2sample Various Methods for the Two Sample Problem in
D>1 Dimensions
MDCcure Martingale Dependence Tools and Testing for
Mixture Cure Models
MDDC Modified Detecting Deviating Cells Algorithm in
Pharmacovigilance
MDFS MultiDimensional Feature Selection
MDMA Mathijs Deen's Miscellaneous Auxiliaries
MDMR Multivariate Distance Matrix Regression
MDOLS Inference of Quadratic Functional for
Moderate-Dimensional OLS
MDP2 Markov Decision Processes (MDPs)
MDPIexploreR Web Scraping and Bibliometric Analysis of MDPI
Journals
MDPtoolbox Markov Decision Processes Toolbox
MDSMap High Density Genetic Linkage Mapping using
Multidimensional Scaling
MDSPCAShiny Interactive Document for Working with
Multidimensional Scaling and Principal
Component Analysis
MDSS Modeling Human Dentin Serial Sectioning
MDgof Various Methods for the Goodness-of-Fit Problem
in D>1 Dimensions
MDimNormn Multi-Dimensional MA Normalization for Plate
Effect
MEAanalysis Analyse and Visualise Multi Electrode Array
Burst Data
MECfda Scalar-on-Function Regression with Measurement
Error Correction
MED Mediation by Tilted Balancing
MEDesigns Mating Environmental Designs
MEDseq Mixtures of Exponential-Distance Models with
Covariates
MEFM Perform MEFM Estimation on Matrix Time Series
MEGB Gradient Boosting for Longitudinal Data
MEMSS Data Sets from Mixed-Effects Models in S
MERO Performing Monte Carlo Expectation Maximization
Random Forest Imputation for Biological Data
MESS Miscellaneous Esoteric Statistical Scripts
MEclustnet Fit the Mixture of Experts Latent Position
Cluster Model to Network Data
MEsreg Generalized Maximum Entropy Estimation for
Smooth Transition and Kink Regression Models
MF.beta4 Measuring Ecosystem Multi-Functionality and Its
Decomposition
MFAg Multiple Factor Analysis (MFA)
MFDFA MultiFractal Detrended Fluctuation Analysis
MFF Meta Fuzzy Functions
MFO Maximal Fat Oxidation and Kinetics Calculation
MFPCA Multivariate Functional Principal Component
Analysis for Data Observed on Different
Dimensional Domains
MFRCD Optimal Row-Column Designs for Asymmetrical
Factorial Experiments
MFSD Multivariate Functional Spatial Data
MFSIS Model-Free Sure Independent Screening
Procedures
MGBT Multiple Grubbs-Beck Low-Outlier Test
MGDrivE Mosquito Gene Drive Explorer
MGDrivE2 Mosquito Gene Drive Explorer 2
MGL Module Graphical Lasso
MGLM Multivariate Response Generalized Linear Models
MGMM Missingness-Aware Gaussian Mixture Models
MGPSDK Interact with the Maxar 'MGP' Application
Programming Interfaces
MGSDA Multi-Group Sparse Discriminant Analysis
MHCtools Analysis of MHC Data in Non-Model Species
MHD Metric Halfspace Depth
MHDA Massive Hierarchically Data Analysis
MHQoL Mental Health Quality of Life Toolkit
MHTdiscrete Multiple Hypotheses Testing for Discrete Data
MHTmult Multiple Hypotheses Testing for Multiple
Families/Groups Structure
MHTrajectoryR Bayesian Model Selection in Logistic Regression
for the Detection of Adverse Drug Reactions
MIAmaxent A Modular, Integrated Approach to Maximum
Entropy Distribution Modeling
MIC Analysis of Antimicrobial Minimum Inhibitory
Concentration Data
MICsplines The Computing of Monotonic Spline Bases and
Constrained Least-Squares Estimates
MIDASim Simulating Realistic Microbiome Data using
'MIDASim'
MIDN Nearly Exact Sample Size Calculation for Exact
Powerful Nonrandomized Tests for Differences
Between Binomial Proportions
MIGEE Impute Missing Values and Fitting Linear Mixed
Effect Model
MIIPW IPW and Mean Score Methods for Time-Course
Missing Data
MIIVefa Exploratory Factor Analysis Using Model Implied
Instrumental Variables
MIIVsem Model Implied Instrumental Variable (MIIV)
Estimation of Structural Equation Models
MIMER Data Wrangling for Antimicrobial Resistance
Studies
MIMSunit Algorithm to Compute Monitor Independent
Movement Summary Unit (MIMS-Unit)
MINTplates Encode "License-Plates" from Sequences and
Decode Them Back
MIRDD Diagnostic Tool by Multiple Imputation for
Regression Discontinuity Designs
MIXFIM Evaluation of the FIM in NLMEMs using MCMC
MJMbamlss Multivariate Joint Models with 'bamlss'
MKLE Maximum Kernel Likelihood Estimation
MKMeans A Modern K-Means (MKMeans) Clustering Algorithm
MKclass Statistical Classification
MKdescr Descriptive Statistics
MKendall Matrix Kendall's Tau and Matrix Elliptical
Factor Model
MKinfer Inferential Statistics
MKmisc Miscellaneous Functions from M. Kohl
MKomics Omics Data Analysis
MKpower Power Analysis and Sample Size Calculation
ML.MSBD Maximum Likelihood Inference on Multi-State
Trees
ML2Pvae Variational Autoencoder Models for IRT
Parameter Estimation
MLBC Bias Correction Methods for Models Using
Synthetic Data
MLCIRTwithin Latent Class Item Response Theory (LC-IRT)
Models under Within-Item Multidimensionality
MLCM Maximum Likelihood Conjoint Measurement
MLCOPULA Classification Models with Copula Functions
MLCausal Causal Inference Methods for Multilevel and
Clustered Data
MLDS Maximum Likelihood Difference Scaling
MLDataR Collection of Machine Learning Datasets for
Supervised Machine Learning
MLE Maximum Likelihood Estimation of Various
Univariate and Multivariate Distributions
MLEce Asymptotic Efficient Closed-Form Estimators for
Multivariate Distributions
MLEcens Computation of the MLE for Bivariate Interval
Censored Data
MLFDR High Dimensional Mediation Analysis using Local
False Discovery Rates
MLFS Machine Learning Forest Simulator
MLGL Multi-Layer Group-Lasso
MLGdata Datasets for Use with Salvan, Sartori and Pace
(2020)
MLID Multilevel Index of Dissimilarity
MLInterfaces Uniform interfaces to R machine learning
procedures for data in Bioconductor containers
MLML2R Maximum Likelihood Estimation of DNA
Methylation and Hydroxymethylation Proportions
MLMOI Estimating Frequencies, Prevalence and
Multiplicity of Infection
MLMusingR Practical Multilevel Modeling
MLPUGS Multi-Label Prediction Using Gibbs Sampling
(and Classifier Chains)
MLSP Machine Learning Models for Soil Properties
MLZ Mean Length-Based Estimators of Mortality using
TMB
MLeval Machine Learning Model Evaluation
MLmetrics Machine Learning Evaluation Metrics
MLmorph Integrating Morphological Modeling and Machine
Learning for Decision Support
MLpreemption Maximum Likelihood Estimation of the Niche
Preemption Model
MLwrap Machine Learning Modelling for Everyone
MM The Multiplicative Multinomial Distribution
MM4LMM Inference of Linear Mixed Models Through MM
Algorithm
MMAC Data for Mathematical Modeling and Applied
Calculus
MMAD An R Package of Minorization-Maximization
Algorithm via the Assembly--Decomposition
Technology
MMD Minimal Multilocus Distance (MMD) for Source
Attribution and Loci Selection
MMDCopula Robust Estimation of Copulas by Maximum Mean
Discrepancy
MMDai Multivariate Multinomial Distribution
Approximation and Imputation for Incomplete
Categorical Data
MMDvariance Detecting Differentially Variable Genes Using
the Mixture of Marginal Distributions
MMGFM Multi-Study Multi-Modality Generalized Factor
Model
MMINP Microbe-Metabolite Interactions-Based Metabolic
Profiles Predictor
MMLR Fitting Markov-Modulated Linear Regression
Models
MMOC Multi-Omic Spectral Clustering using the Flag
Manifold
MMRcaseselection Case Classification and Selection Based on
Regression Results
MMWRweek Convert Dates to MMWR Day, Week, and Year
MMeM Multivariate Mixed Effects Model
MN Matrix Normal Distribution
MNARclust Clustering Data with Non-Ignorable Missingness
using Semi-Parametric Mixture Models
MNB Diagnostic Tools for a Multivariate Negative
Binomial Regression Model
MNLR Interactive Shiny Presentation for Working with
Multinomial Logistic Regression
MNM Multivariate Nonparametric Methods. An Approach
Based on Spatial Signs and Ranks
MNP Fitting the Multinomial Probit Model
MNS Mixed Neighbourhood Selection
MNormTest Multivariate Normal Hypothesis Testing
MOCCA Multi-Objective Optimization for Collecting
Cluster Alternatives
MODISTools Interface to the 'MODIS Land Products Subsets'
Web Services
MOEADr Component-Wise MOEA/D Implementation
MOFA2 Multi-Omics Factor Analysis v2
MOFAT Maximum One-Factor-at-a-Time Designs
MOLHD Multiple Objective Latin Hypercube Design
MOM Estimation and Testing of Hypothesis
MOODE Multi-Objective Optimal Design of Experiments
MOQA Basic Quality Data Assurance for
Epidemiological Research
MOSAlloc Constraint Multiobjective Sample Allocation
MOST Multiphase Optimization Strategy
MOTE Effect Size and Confidence Interval Calculator
MOsemiind Marshall-Olkin Shock Models with
Semi-Independent Time
MOutliers Multivariate Outlier Detection Methods
MPBoost Treatment Allocation in Clinical Trials by the
Maximal Procedure
MPCI Multivariate Process Capability Indices (MPCI)
MPCR Multi Precision Computing
MPDiR Data Sets and Scripts for Modeling
Psychophysical Data in R
MPGE A Two-Step Approach to Testing Overall Effect
of Gene-Environment Interaction for Multiple
Phenotypes
MPI Computation of Multidimensional Poverty Index
(MPI)
MPN Most Probable Number and Other Microbial
Enumeration Techniques
MPS Estimating Through the Maximum Product Spacing
Approach
MPSEM Modelling Phylogenetic Signals using
Eigenvector Maps
MPTinR Analyze Multinomial Processing Tree Models
MPV Data Sets from Montgomery, Peck and Vining
MPsychoR Modern Psychometrics with R
MQMF Modelling and Quantitative Methods in Fisheries
MR.RGM Fitting Multivariate Bidirectional Mendelian
Randomization Networks Using Bayesian Directed
Cyclic Graphical Models
MRAM Multivariate Regression Association Measure
MRCE Multivariate Regression with Covariance
Estimation
MRCV Methods for Analyzing Multiple Response
Categorical Variables (MRCVs)
MRFA Fitting and Predicting Large-Scale Nonlinear
Regression Problems using Multi-Resolution
Functional ANOVA (MRFA) Approach
MRFcov Markov Random Fields with Additional Covariates
MRG Create Non-Confidential Multi-Resolution Grids
MRHawkes Multivariate Renewal Hawkes Process
MRIreduce ROI-Based Transformation of Neuroimages into
High-Dimensional Data Frames
MRMCaov Multi-Reader Multi-Case Analysis of Variance
MRMCbinary Multi-Reader Multi-Case Analysis of Binary
Diagnostic Tests
MRMCsamplesize Sample Size Estimations for Planning
Multi-Reader Multi-Case (MRMC) Studies Without
Pilot Data
MRPC PC Algorithm with the Principle of Mendelian
Randomization
MRQoL Minimal Clinically Important Difference and
Response Shift Effect for Health-Related
Quality of Life
MRReg MDL Multiresolution Linear Regression Framework
MRStdCRT Model-Robust Standardization in
Cluster-Randomized Trials
MRStdLCRT Model-Robust Standardization for Longitudinal
Cluster-Randomized Trials
MRTAnalysis Assessing Proximal, Distal, and Mediated Causal
Excursion Effects for Micro-Randomized Trials
MRTSampleSize A Sample Size Calculator for Micro-Randomized
Trials
MRTSampleSizeBinary Sample Size Calculator for MRT with Binary
Outcomes
MRZero Diet Mendelian Randomization
MRgrowth Mark-Recapture Growth Models
MRmediation A Causal Mediation Method with Methylated
Region (MR) as the Mediator
MSBStatsData Data Sets for Courses at the Münster School of
Business
MSCCT Multiple Survival Crossing Curves Tests
MSCMT Multivariate Synthetic Control Method Using
Time Series
MSCquartets Analyzing Gene Tree Quartets under the
Multi-Species Coalescent
MSCsimtester Tests of Multispecies Coalescent Gene Tree
Simulator Output
MSEtool Management Strategy Evaluation Toolkit
MSG Data and Functions for the Book Modern
Statistical Graphics
MSGARCH Markov-Switching GARCH Models
MSGARCHelm Hybridization of MS-GARCH and ELM Model
MSIMST Bayesian Monotonic Single-Index Regression
Model with the Skew-T Likelihood
MSMGOptimizer Mine Sustainability Modeling Group (MSMG)
'SimaPro' CSV Optimizer
MSML Model Selection Based on Machine Learning (ML)
MSMU Descriptive Statistics Functions for Numeric
Data
MSMwRA Multivariate Statistical Methods with R
Applications
MSN Multivariate Survival Data with Network
Structures
MSPRT A Modified Sequential Probability Ratio Test
(MSPRT)
MSSQL Tools to Work with Microsoft SQL Server
Databases via 'RODBC'
MST Multivariate Survival Trees
MSTest Hypothesis Testing for Markov Switching Models
MSUthemes Michigan State University (MSU) Palettes and
Themes
MSbox Mass Spectrometry Tools
MSclassifR Automated Classification of Mass Spectra
MSclust Multiple-Scaled Clustering
MScombine Combine Data from Positive and Negative
Ionization Mode Finding Common Entities
MSigSeg Multiple SIGnal SEGmentation
MSinference Multiscale Inference for Nonparametric Time
Trend(s)
MSnbase Base Functions and Classes for Mass
Spectrometry and Proteomics
MSoutcomes CORe Multiple Sclerosis Outcomes Toolkit
MSwM Fitting Markov Switching Models
MTA Multiscalar Territorial Analysis
MTAR Multi-Trait Analysis of Rare-Variant
Association Study
MTE Maximum Tangent Likelihood Estimation for
Robust Linear Regression and Variable Selection
MTLR Survival Prediction with Multi-Task Logistic
Regression
MTPS Multi-Task Prediction using Stacking Algorithms
MTS All-Purpose Toolkit for Analyzing Multivariate
Time Series (MTS) and Estimating Multivariate
Volatility Models
MTSYS Methods in Mahalanobis-Taguchi (MT) System
MTest A Procedure for Multicollinearity Testing using
Bootstrap
MUACz Generate MUAC and BMI z-Scores and Percentiles
for Children and Adolescents
MUGS Multisource Graph Synthesis with EHR Data
MUS Monetary Unit Sampling and Estimation Methods,
Widely Used in Auditing
MUVR2 Multivariate Methods with Unbiased Variable
Selection
MVA An Introduction to Applied Multivariate
Analysis with R
MVET Multivariate Estimates and Tests
MVN Multivariate Normality Tests
MVNBayesian Bayesian Analysis Framework for MVN (Mixture)
Distribution
MVNGmod Matrix-Variate Non-Gaussian Linear Regression
Models
MVOPR Multi-View Orthogonal Projection Regression for
Multi-Modality Integration
MVPBT Publication Bias Tests for Meta-Analysis of
Diagnostic Accuracy Test
MVQuickGraphs Quick Multivariate Graphs
MVR Mean-Variance Regularization
MVSKmod Matrix-Variate Skew Linear Regression Models
MVT Estimation and Testing for the Multivariate
t-Distribution
MVTests Multivariate Hypothesis Tests
MVar Multivariate Analysis
MVar.pt Analise multivariada (brazilian portuguese)
MVisAGe Compute and Visualize Bivariate Associations
MWright Mainardi-Wright Family of Distributions
MaOEA Many Objective Evolutionary Algorithm
MacBehaviour Behavioural Studies of Large Language Models
MachineShop Machine Learning Models and Tools
MacroFilters Robust Trend-Cycle Decomposition for
Macroeconomic Time Series
MacroZooBenthosWaterA Fresh Water Quality Analysis Based on
Macrozoobenthos
MaddisonData Maddison Project Data
Maeswrap Wrapper Functions for MAESTRA/MAESPA
MagmaClustR Clustering and Prediction using Multi-Task
Gaussian Processes with Common Mean
MainExistingDatasets Main Existing Human Datasets
MajKMeans k-Means Algorithm with a
Majorization-Minimization Method
MajMinKmeans k-Means Algorithm with a
Majorization-Minimization Method
MakefileR Create 'Makefiles' Using R
ManagedCloudProvider Providing the Kubernetes-Like Functions for the
Non-Kubernetes Cloud Service
MandalaR Building Mandalas from Parametric Equations of
Classical Curves
Mangrove Risk Prediction on Trees
ManifoldOptim An R Interface to the 'ROPTLIB' Library for
Riemannian Manifold Optimization
ManlyMix Manly Mixture Modeling and Model-Based
Clustering
MannWhitneyCopula Computing Mann-Whitney Effect Based on Copulas
MantaID A Machine-Learning Based Tool to Automate the
Identification of Biological Database IDs
ManyIVsNets Environmental Phillips Curve Analysis with
Multiple Instrumental Variables and Networks
ManyTests Multiple Testing Procedures of Cox (2011) and
Wong and Cox (2007)
Map2NCBI Mapping Markers to the Nearest Genomic Feature
MapGAM Mapping Smoothed Effect Estimates from
Individual-Level Data
Mapinguari Process-Based Biogeographical Analysis
MapperAlgo Topological Data Analysis: Mapper Algorithm
MappingCalc Mapping Calculator for EQ-5D Utility Scores
MarZIC Marginal Mediation Effects with Zero-Inflated
Compositional Mediator
MareyMap Estimation of Meiotic Recombination Rates Using
Marey Maps
MarginalMaxTest Max-Type Test for Marginal Correlation with
Bootstrap
MarginalMediation Marginal Mediation
MariNET Build Network Based on Linear Mixed Models from
EHRs
MarketMatching Market Matching and Causal Impact Inference
Markovchart Markov Chain-Based Cost-Optimal Control Charts
MarkowitzR Statistical Significance of the Markowitz
Portfolio
MassSpecWavelet Peak Detection for Mass Spectrometry data using
wavelet-based algorithms
MassWateR Quality Control and Analysis of Massachusetts
Water Quality Data
Massign Simple Matrix Construction
MasterBayes Maximum Likelihood and Markov Chain Monte Carlo
(MCMC) Methods for Pedigree Reconstruction and
Analysis
MatTransMix Clustering with Matrix Gaussian and Matrix
Transformation Mixture Models
MatchGATE Estimate Group Average Treatment Effects with
Matching
MatchIt Nonparametric Preprocessing for Parametric
Causal Inference
MatchLinReg Combining Matching and Linear Regression for
Causal Inference
MatchThem Matching and Weighting Multiply Imputed
Datasets
Matching Multivariate and Propensity Score Matching with
Balance Optimization
MatchingPursuit Processing Time Series Data Using the Matching
Pursuit Algorithm
MatrixCorrelation Matrix Correlation Coefficients
MatrixEQTL Matrix eQTL: Ultra Fast eQTL Analysis via Large
Matrix Operations
MatrixExtra Extra Methods for Sparse Matrices
MatrixGenerics S4 Generic Summary Statistic Functions that
Operate on Matrix-Like Objects
MatrixHMM Parsimonious Families of Hidden Markov Models
for Matrix-Variate Longitudinal Data
MatrixMixtures Model-Based Clustering via Matrix-Variate
Mixture Models
MatrixModels Modelling with Sparse and Dense Matrices
MaxIntTools Testing Maximal Interaction in Two-Mode
Clustering via a Permutation Based Procedure
MaxMC Maximized Monte Carlo
MaxPro Maximum Projection Designs
MaxSkew Orthogonal Data Projections with Maximal
Skewness
MaxWiK Machine Learning Method Based on Isolation
Kernel Mean Embedding
MaxentVariableSelection
Selecting the Best Set of Relevant
Environmental Variables along with the Optimal
Regularization Multiplier for Maxent Niche
Modeling
MaximinInfer Inference for Maximin Effects in
High-Dimensional Settings
MazamaCoreUtils Utility Functions for Production R Code
MazamaLocationUtils Manage Spatial Metadata for Known Locations
MazamaRollUtils Efficient Rolling Functions
MazamaSpatialPlots Thematic Plots for Mazama Spatial Datasets
MazamaSpatialUtils Spatial Data Download and Utility Functions
MazamaTimeSeries Core Functionality for Environmental Time
Series
McMiso Multicore Multivariable Isotonic Regression
Mcomp Data from the M-Competitions
MeTo Meteorological Tools
Meanimiles Estimation of Meanimiles
MeasurementDiagnostics
Diagnostics for Lists of Codes Based on
Measurements
MedDataSets Comprehensive Medical, Disease, Treatment, and
Drug Datasets
MedDietCalc Multi Calculator to Compute Scores of Adherence
to Mediterranean Diet
MedLEA Morphological and Structural Features of
Medicinal Leaves
MedZIsc Statistical Framework for Co-Mediators of
Zero-Inflated Single-Cell Data
MediaK Calculate MeDiA_K Distance
Mediana Clinical Trial Simulations
MedianaDesigner Power and Sample Size Calculations for Clinical
Trials
MedxR Access Drug Regulatory Data via FDA and Health
Canada APIs
MendelianRandomization
Mendelian Randomization Package
Mercator Clustering and Visualizing Distance Matrices
Mestim Computes the Variance-Covariance Matrix of
Multidimensional Parameters Using M-Estimation
MetAlyzer Read and Analyze 'MetIDQ™' Software
Output Files
MetBrewer Color Palettes Inspired by Works at the
Metropolitan Museum of Art
MetSizeR A Shiny App for Sample Size Estimation in
Metabolomic Experiments
MetaAnalyser An Interactive Visualisation of Meta-Analysis
as a Physical Weighing Machine
MetaCycle Evaluate Periodicity in Large Scale Data
MetaDose Dose-Response Meta-Regression for Meta-Analysis
MetaEntropy Functional Shannon Entropy for Virome
Mutational Analysis
MetaHD A Multivariate Meta-Analysis Model for
High-Dimensional Data
MetaHunt Privacy-Preserving Meta-Analysis via Low-Rank
Basis Hunting
MetaIntegration Ensemble Meta-Prediction Framework
MetaLandSim Landscape and Range Expansion Simulation
MetaNLP Natural Language Processing for Meta Analysis
MetaNet Network Analysis for Omics Data
MetaRVM Meta-Population Compartmental Model for
Respiratory Virus Diseases
MetaSKAT Meta Analysis for SNP-Set (Sequence) Kernel
Association Test
MetaSubtract Subtracting Summary Statistics of One or more
Cohorts from Meta-GWAS Results
MetaUtility Utility Functions for Conducting and
Interpreting Meta-Analyses
MetaboCoreUtils Core Utils for Metabolomics Data
MetaboQC Normalize Metabolomic Data using QC Signal
MetabolAnalyze Probabilistic Latent Variable Models for
Metabolomic Data
MetabolSSMF Simplex-Structured Matrix Factorisation for
Metabolomics Analysis
MetabolicSurv A Biomarker Validation Approach for
Classification and Predicting Survival Using
Metabolomics Signature
MetabolicSyndrome Diagnosis of Metabolic Syndrome
MetabolomicsBasics Basic Functions to Investigate Metabolomics
Data Matrices
MethComp Analysis of Agreement in Method Comparison
Studies
MethEvolSIM Simulate DNA Methylation Dynamics on Different
Genomic Structures along Genealogies
MethScope Ultra-Fast Analysis of Sparse DNA Methylome via
Recurrent Pattern Encoding
MethodCompare Evaluating Bias and Precision in Method
Comparison Studies
MethodOpt Advanced Method Optimization for
Spectra-Generating Sampling and Analysis
Instrumentation
MetricGraph Random Fields on Metric Graphs
Metrics Evaluation Metrics for Machine Learning
MetricsWeighted Weighted Metrics and Performance Measures for
Machine Learning
MexBrewer Color Palettes Inspired by Works of Mexican
Painters and Muralists
MexicoDataAPI Access Mexican Data via APIs and Curated
Datasets
MfUSampler Multivariate-from-Univariate (MfU) MCMC Sampler
Mfuzz Soft clustering of omics time series data
Mhorseshoe Approximate Algorithm for Horseshoe Prior
MiRKAT Microbiome Regression-Based Kernel Association
Tests
MiRNAQCD Micro-RNA Quality Control and Diagnosis
MiRSEA 'MicroRNA' Set Enrichment Analysis
MicSim Performing Continuous-Time Microsimulation
MicroDatosEs Utilities for Official Spanish Microdata
MicroMacroMultilevel Micro-Macro Multilevel Modeling
MicroMoB Discrete Time Simulation of Mosquito-Borne
Pathogen Transmission
MicroNiche Microbial Niche Measurements
MicrobTiSDA Microbiome Time-Series Data Analysis
MicrobialGrowth Estimates Growth Parameters from Models and
Plots the Curve
MicrobiomeStat Statistical Methods for Microbiome
Compositional Data
MicrobiomeSurv Biomarker Validation for Microbiome-Based
Survival Classification and Prediction
Microsoft365R Interface to the 'Microsoft 365' Suite of Cloud
Services
MigConnectivity Estimate Migratory Connectivity for Migratory
Animals
MigrationDetectR Segment-Based Migration Detection Algorithm
MinEDfind A Bayesian Design for Minimum Effective
Dosing-Finding Trial
MinTriadic Extension to the 'Lolog' Package for 'Triadic'
Network Statistics
MindOnStats Data sets included in Utts and Heckard's Mind
on Statistics
Minirand Minimization Randomization
MisRepARMA Misreported Time Series Analysis
MiscMath Miscellaneous Mathematical Tools
MiscMetabar Miscellaneous Functions for Metabarcoding
Analysis
MissCP Change Point Detection with Missing Values
MissMech Testing Homoscedasticity, Multivariate
Normality, and Missing Completely at Random
MissingHandle Handles Missing Dates and Data and Converts
into Weekly and Monthly from Daily
MissingPlotLSD Missing Plot in LSD
MissingPlotRBD Missing Plot in RBD
Missplot Missing Plot Technique in Design of Experiment
MitoHEAR Quantification of Mitochondrial DNA
Heteroplasmy
MittagLeffleR Mittag-Leffler Family of Distributions
MixFrac Fractional Factorial Designs with Alias and
Trend-Free Analysis
MixGHD Model Based Clustering, Classification and
Discriminant Analysis Using the Mixture of
Generalized Hyperbolic Distributions
MixLFA Mixture of Longitudinal Factor Analysis Methods
MixMashNet Tools for Multilayer and Single Layer Network
Modeling
MixMatrix Classification with Matrix Variate Normal and t
Distributions
MixOptim Mixture Optimization Algorithm
MixRF A Random-Forest-Based Approach for Imputing
Clustered Incomplete Data
MixSAL Mixtures of Multivariate Shifted Asymmetric
Laplace (SAL) Distributions
MixSIAR Bayesian Mixing Models in R
MixSemiRob Mixture Models: Parametric, Semiparametric, and
Robust
MixSim Simulating Data to Study Performance of
Clustering Algorithms
MixStable Parameter Estimation for Stable Distributions
and Their Mixtures
MixTwice Large-Scale Hypothesis Testing by Variance
Mixing
MixedIndTests Tests of Randomness and Tests of Independence
MixedLevelRSDs Mixed Level Response Surface Designs
MixedPoisson Mixed Poisson Models
MixedPsy Statistical Tools for the Analysis of
Psychophysical Data
MixedTS Mixed Tempered Stable Distribution
MixfMRI Mixture fMRI Clustering Analysis
MixtureFitting Fitting of Univariate Mixture Distributions to
Data using Various Approaches
MixtureMissing Robust and Flexible Model-Based Clustering for
Data Sets with Missing Values at Random
Mmcsd Modeling Complex Longitudinal Data in a Quick
and Easy Way
MoBPS Modular Breeding Program Simulator
MoEClust Gaussian Parsimonious Clustering Models with
Covariates and a Noise Component
MoNAn Mobility Network Analysis
MoTBFs Learning Hybrid Bayesian Networks using
Mixtures of Truncated Basis Functions
ModEstM Mode Estimation, Even in the Multimodal Case
ModLR Information-Theoretic Approach for Moderation
Analysis
ModStatR Statistical Modelling in Action with R
ModTools Building Regression and Classification Models
ModalCens Parametric Modal Regression with Right
Censoring
ModalForecast Parametric Modal ARIMA Models using the SKD
Family
Modalclust Hierarchical Modal Clustering
ModelMap Modeling and Map Production using Random Forest
and Related Stochastic Models
ModelMatrixModel Create Model Matrix and Save the Transforming
Parameters
ModelMetrics Rapid Calculation of Model Metrics
Modelcharts Classification Model Charts
Modeler Classes and Methods for Training and Using
Binary Prediction Models
MolgenisArmadillo Armadillo Client for the Armadillo Service
MolgenisAuth 'OpenID Connect' Discovery and Authentication
MomTrunc Moments of Folded and Doubly Truncated
Multivariate Distributions
Mondrian A Simple Graphical Representation of the
Relative Occurrence and Co-Occurrence of Events
MonoPhy Explore Monophyly of Taxonomic Groups in a
Phylogeny
MonoPoly Functions to Fit Monotone Polynomials
MonotoneHazardRatio Nonparametric Estimation and Inference of a
Monotone Hazard Ratio Function
MonotonicityTest Nonparametric Bootstrap Test for Regression
Monotonicity
Monte.Carlo.se Monte Carlo Standard Errors
MonteCarloSEM Monte Carlo Simulation for Structural Equation
Modeling
MoonShineR Predict Moonlight, Sunlight, and/or Twilight
Ground Illuminance
MorphSim Simulate Discrete Character Data along
Phylogenetic Trees
Morpho Calculations and Visualisations Related to
Geometric Morphometrics
MorphoRegions Analysis of Regionalization Patterns in
Serially Homologous Structures
MorphoTools2 Multivariate Morphometric Analysis
MortCast Estimation and Projection of Age-Specific
Mortality Rates
MortalityGaps The Double-Gap Life Expectancy Forecasting
Model
MortalityLaws Parametric Mortality Models, Life Tables and
HMD
MortalityTables A Framework for Various Types of Mortality /
Life Tables
MplusAutomation An R Package for Facilitating Large-Scale
Latent Variable Analyses in Mplus
MplusLGM Automate Latent Growth Mixture Modelling in
'Mplus'
MplusTrees Decision Trees with Structural Equation Models
Fit in 'Mplus'
Mqrcm M-Quantile Regression Coefficients Modeling
MsCoreUtils Core Utils for Mass Spectrometry Data
MsExperiment Infrastructure for Mass Spectrometry
Experiments
MsFeatures Functionality for Mass Spectrometry Features
MuChPoint Multiple Change Point
MuFiMeshGP Multi-Fidelity Emulator for Computer
Experiments with Tunable Fidelity Levels
MuMIn Multi-Model Inference
MuPETFlow Multiple Ploidy Estimation Tool for all Species
Compatible with Flow Cytometry
MuViCP MultiClass Visualizable Classification using
Combination of Projections
MultANOVA Analysis of Designed High-Dimensional Data
using the Comprehensive MultANOVA Framework
MultBiplotR Multivariate Analysis Using Biplots in R
MultEq Multiple Equivalence Tests and Simultaneous
Confidence Intervals
MultNonParam Multivariate Nonparametric Methods
MultOrdRS Model Multivariate Ordinal Responses Including
Response Styles
MultRegCMP Bayesian Multivariate Conway-Maxwell-Poisson
Regression Model for Correlated Count Data
MultSurvTests Permutation Tests for Multivariate Survival
Analysis
MultiATSM Multicountry Term Structure of Interest Rates
Models
MultiAssayExperiment Software for the integration of multi-omics
experiments in Bioconductor
MultiBD Multivariate Birth-Death Processes
MultiCOAP High-Dimensional Covariate-Augmented
Overdispersed Multi-Study Poisson Factor Model
MultiClassROC ROC Curves for Multi-Class Analysis
MultiDataSet Implementation of MultiDataSet and ResultSet
MultiDiscreteRNG Generate Multivariate Discrete Data
MultiFit Multiscale Fisher's Independence Test for
Multivariate Dependence
MultiGlarmaVarSel Variable Selection in Sparse Multivariate
GLARMA Models
MultiGrey Fitting and Forecasting of Grey Model for
Multivariate Time Series Data
MultiGroupO MultiGroup Method and Simulation Data Analysis
MultiGroupSequential Group-Sequential Procedures with Multiple
Hypotheses
MultiJoin Enables Efficient Joining of Data File on
Common Fields using the Unix Utility Join
MultiKink Estimation and Inference for Multi-Kink
Quantile Regression
MultiLCIRT Multidimensional Latent Class Item Response
Theory Models
MultiLevelOptimalBayes
Regularized Bayesian Estimator for Two-Level
Latent Variable Models
MultiNMix Multi-Species N-Mixture (MNM) Models with
'nimble'
MultiObjMatch Multi-Objective Matching Algorithm
MultiOrd Generation of Multivariate Ordinal Variates
MultiPhen A Package to Test for Multi-Trait Association
MultiRFM High-Dimensional Multi-Study Robust Factor
Model
MultiRNG Multivariate Pseudo-Random Number Generation
MultiResponseR Analysis of Data from Multiple-Response
Questionnaires
MultiRobust Multiply Robust Methods for Missing Data
Problems
MultiSkew Measures, Tests and Removes Multivariate
Skewness
MultiSpline Spline-Based Nonlinear Modeling for Multilevel
and Longitudinal Data
MultiStatM Multivariate Statistical Methods
MultiTraits Analyzing and Visualizing Multidimensional
Plant Traits
MultipleBreakpoints Estimating Multiple Breakpoints for a Sequence
of Realizations of Bernoulli Variables
MultipleBubbles Test and Detection of Explosive Behaviors for
Time Series
MultipleRegression Multiple Regression Analysis
MultiplierDEA Multiplier Data Envelopment Analysis and Cross
Efficiency
MultiscaleDTM Multi-Scale Geomorphometric Terrain Attributes
MultiscaleSCP Multiscale Systematic Conservation Planning
Across Nested H3 Grids
MultisiteMediation Causal Mediation Analysis in Multisite Trials
MultivariateAnalysis Pacote Para Analise Multivariada
MultivariateRandomForest
Models Multivariate Cases Using Random Forests
MultivariateTrendAnalysis
Univariate and Multivariate Trend Testing
MultiwayRegression Perform Tensor-on-Tensor Regression
MulvariateRandomForestVarImp
Variable Importance Measures for Multivariate
Random Forests
MvBinary Modelling Multivariate Binary Data with Blocks
of Specific One-Factor Distribution
My.stepwise Stepwise Variable Selection Procedures for
Regression Analysis
Mychisq Chi-Squared Test for Goodness of Fit and
Independence Test
MyoScore Transcriptomic Scoring for Human Skeletal
Muscle Health
N2H4 Handling Methods for Naver News Text Crawling
N2R Fast and Scalable Approximate k-Nearest
Neighbor Search Methods using 'N2' Library
NAC Network-Adjusted Covariates for Community
Detection
NACHO NanoString Quality Control Dashboard
NADA Nondetects and Data Analysis for Environmental
Data
NADA2 Data Analysis for Censored Environmental Data
NAEPirtparams IRT Parameters for the National Assessment of
Education Progress
NAEPprimer The NAEP Primer
NAM Nested Association Mapping
NAP Non-Local Alternative Priors in Psychology
NAPrior Network Meta-Analytic Predictive Prior for
Mid-Trial SoC Changes
NAVAECI Non-Asymptotically Valid and Asymptotically
Exact (NAVAE) Confidence Intervals
NB.MClust Negative Binomial Model-Based Clustering
NBAloveR Help Basketball Data Analysis
NBBDesigns Neighbour Balanced Block Designs (NBBDesigns)
NBDCtools National Institutes of Health Brain Development
Cohorts Data Hub Tools
NBDdirichlet NBD-Dirichlet Model of Consumer Buying Behavior
for Marketing Research
NBDesign Design and Monitoring of Clinical Trials with
Negative Binomial Endpoint
NBKP Beta Kernel Process Modeling with Negative
Binomial Response
NBLDA Negative Binomial Linear Discriminant Analysis
NBPSeq Negative Binomial Models for RNA-Sequencing
Data
NBR Network-Based R-Statistics using Mixed Effects
Models
NBShiny Interactive Document for Working with Naive
Bayes Classification
NBShiny2 Interactive Document for Working with Naive
Bayes Classification
NBShiny3 Interactive Document for Working with Naive
Bayes Classification
NBtsVarSel Variable Selection in a Specific Regression
Time Series of Counts
NCA Necessary Condition Analysis
NCC Simulation and Analysis of Platform Trials with
Non-Concurrent Controls
NCSCopula Non-Central Squared Copula Models Estimation
NCmisc Miscellaneous Functions for Creating Adaptive
Functions and Scripts
NCutYX Clustering of Omics Data of Multiple Types with
a Multilayer Network Representation
NDP Interactive Presentation for Working with
Normal Distribution
NEpiC Network Assisted Algorithm for Epigenetic
Studies Using Mean and Variance Combined
Signals
NFLSimulatoR Simulating Plays and Drives in the NFL
NFWdist The Standard Distribution Functions for the 3D
NFW Profile
NGBVS Bayesian Variable Selection for SNP Data using
Normal-Gamma
NGCHM Next Generation Clustered Heat Maps
NGLVieweR Interactive 3D Visualization of Molecular
Structures
NHANES Data from the US National Health and Nutrition
Examination Study
NHLData Scores for Every Season Since the Founding of
the NHL in 1917
NHPoisson Modelling and Validation of Non Homogeneous
Poisson Processes
NHSDataDictionaRy NHS Data Dictionary Toolset for NHS Lookups
NHSRdatasets NHS and Healthcare-Related Data for Education
and Training
NHSRplotthedots Draw XmR Charts for NHS 'Making Data Count'
Programme
NHSRwaitinglist Waiting List Metrics Using Queuing Theory
NIMAA Nominal Data Mining Analysis
NIPTeR Fast and Accurate Trisomy Prediction in
Non-Invasive Prenatal Testing
NIRStat Novel Statistical Methods for Studying
Near-Infrared Spectroscopy (NIRS) Time Series
Data
NISTnls Nonlinear least squares examples from NIST
NISTunits Fundamental Physical Constants and Unit
Conversions from NIST
NLP Natural Language Processing Infrastructure
NLPclient Stanford 'CoreNLP' Annotation Client
NLPutils Natural Language Processing Utilities
NLPwavelet Bayesian Wavelet Analysis Using Non-Local
Priors
NMA Network Meta-Analysis Based on Multivariate
Meta-Analysis and Meta-Regression Models
NMADTA Network Meta-Analysis of Multiple Diagnostic
Tests
NMAR Estimation under not Missing at Random
Nonresponse
NMAforest Forest Plots for Network Meta-Analysis with
Proportion for Paths and Studies
NMAoutlier Detecting Outliers in Network Meta-Analysis
NMF Algorithms and Framework for Nonnegative Matrix
Factorization (NMF)
NMFN Non-Negative Matrix Factorization
NMMIPW Inverse Probability Weighting under
Non-Monotone Missing
NMOF Numerical Methods and Optimization in Finance
NMRphasing Phase Error Correction and Baseline Correction
for One Dimensional ('1D') 'NMR' Data
NMTox Dose-Response Relationship Analysis of
Nanomaterial Toxicity
NMVANOVA Novice Model Variation ANOVA
NMcalc Basic Calculations for PK/PD Modeling
NMdata Preparation, Checking and Post-Processing Data
for PK/PD Modeling
NMsim Seamless 'Nonmem' Simulation Platform
NNMIS Nearest Neighbor Based Multiple Imputation for
Survival Data with Missing Covariates
NNMoMo Neural Network Extension to 'StMoMo' for
Lee-Carter Modeling
NNS Nonlinear Nonparametric Statistics
NO.PING.PONG Incorporating Previous Findings When Evaluating
New Data
NORMAgene Data-Driven qRT-PCR Normalization Using
NORMAgene
NOVA Neural Output Visualization and Analysis
NPBBBDAefficiency A-Efficiency for Nested Partially Balanced
Bipartite Block (NPBBB) Designs
NPBayesImputeCat Non-Parametric Bayesian Multiple Imputation for
Categorical Data
NPCD Nonparametric Methods for Cognitive Diagnosis
NPCDTools The Nonparametric Classification Methods for
Cognitive Diagnosis
NPCirc Nonparametric Circular Methods
NPCox Nonparametric and Semiparametric Proportional
Hazards Model
NPFD N-Power Fourier Deconvolution
NPHMC Sample Size Calculation for the Proportional
Hazards Mixture Cure Model
NPHazardRate Nonparametric Hazard Rate Estimation
NPIstats Nonparametric Predictive Inference
NPLStoolbox N-Way Partial Least Squares Modelling of
Multi-Way Data
NPMLEcmprsk Type-Specific Failure Rate and Hazard Rate on
Competing Risks Data
NPP Normalized Power Prior Bayesian Analysis
NPRED Predictor Identifier: Nonparametric Prediction
NPStability Rank-Based Stability Index (RSI) for Genotype
by Environment Studies
NPflow Bayesian Nonparametrics for Automatic Gating of
Flow-Cytometry Data
NRMSampling Sampling Design and Estimation Methods for
Natural Resource Management
NRMstatsML Statistical and Machine Learning Engine for
Long-Term Natural Resource Management Data
NRejections Metrics for Multiple Testing with Correlated
Outcomes
NSM3 Functions and Datasets to Accompany Hollander,
Wolfe, and Chicken - Nonparametric Statistical
Methods, Third Edition
NSMM Non-Stationary Multivariate (Copula-Based)
Framework, Hydrological Applications
NSO1212 National Statistical Office of Mongolia's Open
Data API Handler
NSR 'Native Status Resolver'
NST Normalized Stochasticity Ratio
NScluster Simulation and Estimation of the Neyman-Scott
Type Spatial Cluster Models
NTLKwIEx Computation of NTLKwIEx Distribution Properties
NTS Nonlinear Time Series Analysis
NTSS Nonparametric Tests in Spatial Statistics
NU.Learning Nonparametric and Unsupervised Learning from
Cross-Sectional Observational Data
NUCOMBog NUtrient Cycling and COMpetition Model
Undisturbed Open Bog Ecosystems in a Temperate
to Sub-Boreal Climate
NUETON Nitrogen Use Efficiency Toolkit on Numerics
NUSS Mixed N-Grams and Unigram Sequence Segmentation
NVAR Nonlinear Vector Autoregression Models
NVCSSL Nonparametric Varying Coefficient
Spike-and-Slab Lasso
NaileR Interpreting Latent Variables with AI
NameNeedle Using Needleman-Wunsch to Match Sample Names
NatParksPalettes Color Palettes Inspired by National Parks
NatureSounds Animal Sounds for Bioacustic Analysis
NbClust Determining the Best Number of Clusters in a
Data Set
NeEDS4BigData New Experimental Design Based Subsampling
Methods for Big Data
NeStage Effective Population Size from Stage-Structured
Populations
Nebulosa Single-Cell Data Visualisation Using Kernel
Gene-Weighted Density Estimation
Necklaces Necklaces and Bracelets
NegBinBetaBinreg Negative Binomial and Beta Binomial Bayesian
Regression Models
NegativeControlOutcomeAdjustment
Estimation of Vaccine Efficacy using Negative
Control Outcomes
Neighboot Neighborhood Bootstrap Method for RDS
Nematode Ecological Indices Calculator for Nematode
Communities
NestMRMC Single Reader Between-Cases AUC Estimator in
Nested Data
NestedMenu A Nested Menu Widget for 'Shiny' Applications
Nestimate Network Estimation, Bootstrap, and Higher-Order
Analysis
NetCluster Clustering for networks
NetCoupler Inference of Causal Links Between a Network and
an External Variable
NetDA Network-Based Discriminant Analysis Subject to
Multi-Label Classes
NetExplorer Network Explorer
NetGreg Network-Guided Penalized Regression (NetGreg)
NetIndices Estimating Network Indices, Including Trophic
Structure of Foodwebs in R
NetInt Methods for Unweighted and Weighted Network
Integration
NetLogoR Build and Run Spatially Explicit Agent-Based
Models
NetMix Dynamic Mixed-Membership Network Regression
Model
NetOrigin Origin Estimation for Propagation Processes on
Complex Networks
NetPreProc Network Pre-Processing and Normalization
NetRep Permutation Testing Network Module Preservation
Across Datasets
NetSci Calculates Basic Network Measures Commonly Used
in Network Medicine
NetSimR Actuarial Functions for Non-Life Insurance
Modelling
NetSurvProx 'NetSurvProx': Network-Based Survival Analysis
via Proximal Methods
NetVAR Network Structures in VAR Models
NetWeaver Graphic Presentation of Complex Genomic and
Network Data Analysis
NetworkChange Bayesian Package for Network Changepoint
Analysis
NetworkComparisonTest Statistical Comparison of Two Networks Based on
Several Invariance Measures
NetworkComparr Statistical Comparison of Networks
NetworkDistance Distance Measures for Networks
NetworkExtinction Extinction Simulation in Ecological Networks
NetworkInference Inferring Latent Diffusion Networks
NetworkReg Generalized Linear Regression Models on
Network-Linked Data with Statistical Inference
NetworkRiskMeasures Risk Measures for (Financial) Networks
NetworkToolbox Methods and Measures for Brain, Cognitive, and
Psychometric Network Analysis
NeuDist Univariate Continuous Distributions with Model
Diagnostics
NeuralEstimators Likelihood-Free Parameter Estimation using
Neural Networks
NeuralNetTools Visualization and Analysis Tools for Neural
Networks
NeuralSens Sensitivity Analysis of Neural Networks
NeuroDataSets A Comprehensive Collection of Neuroscience and
Brain-Related Datasets
NeuroDecodeR Decode Information from Neural Activity
NeutroCODsAnalysis Neutrosophic Analysis Crossover Designs
NeutroIBDAnalysis Neutrosophic Analysis of Incomplete Block
Designs
NeutroRCDsAnalysis Neutrosophic Analysis of Row Column Designs
Newdistns Computes Pdf, Cdf, Quantile and Random Numbers,
Measures of Inference for 19 General Families
of Distributions
NewmanOmics Extending the Newman Studentized Range
Statistic to Transcriptomics
NiLeDAM Monazite Dating for the NiLeDAM Team
NightDay Night and Day Boundary Plot Function
NipponMap Japanese Map Data and Functions
NitrogenUptake2016 Data and Source Code From: Nitrogen Uptake and
Allocation Estimates for Spartina Alterniflora
and Distichlis Spicata
NlcOptim Solve Nonlinear Optimization with Nonlinear
Constraints
NlinTS Models for Non Linear Causality Detection in
Time Series
NlsyLinks Utilities and Kinship Information for Research
with the NLSY
Nmisc Miscellaneous Functions Used at 'Numeract LLC'
Nmix Bayesian Inference on Univariate Normal
Mixtures
NoSleepR Prevent System Sleep During Long R Tasks
NobBS Nowcasting by Bayesian Smoothing
NonCompart Noncompartmental Analysis for Pharmacokinetic
Data
NonNorMvtDist Multivariate Lomax (Pareto Type II) and Its
Related Distributions
NonParRolCor a Non-Parametric Statistical Significance Test
for Rolling Window Correlation
NonProbEst Estimation in Nonprobability Sampling
NonlinearDiD Staggered Difference-in-Differences with
Nonlinear Outcomes
NonlinearTSA Nonlinear Time Series Analysis
Nonpareil Metagenome Coverage Estimation and Projections
for 'Nonpareil'
NormData Derivation of Regression-Based Normative Data
NormExpression Normalize Gene Expression Data using Evaluated
Methods
NormPsy Normalisation of Psychometric Tests
NormalLaplace The Normal Laplace Distribution
NormalityAssessment A Graphical User Interface for Testing
Normality Visually
NostalgiR Advanced Text-Based Plots
NovelDistns Computes PDF, CDF, Quantile, Random Numbers and
Measures of Inference for 3 General Families of
Distributions
NoviceDeveloperResources
Resources to Assist Novice Developers
NoviceDeveloperResources2
Further Resources to Assist Novice Developers
NumericEnsembles Automatically Runs 18 Individual and 14
Ensembles of Models
Numero Statistical Framework to Define Subgroups in
Complex Datasets
NutrienTrackeR Food Composition Information and Dietary
Assessment
OAIHarvester Harvest Metadata Using OAI-PMH Version 2.0
OBASpatial Objective Bayesian Analysis for Spatial
Regression Models
OBIC Calculate the Open Bodem Index (OBI) Score
OBL Optimum Block Length
OBMbpkg Estimate the Population Size for the Mb
Capture-Recapture Model
OBRE Optimal B-Robust Estimator Tools
OBsMD Objective Bayesian Model Discrimination in
Follow-Up Designs
OCNet Optimal Channel Networks
OCSdata Download Data from the 'Open Case Studies'
Repository
ODMeans OD-Means: k-Means for Origin-Destination
ODRF Oblique Decision Random Forest for
Classification and Regression
ODS Statistical Methods for Outcome-Dependent
Sampling Designs
ODT Optimal Decision Trees Algorithm
ODataQuery Querying on 'OData'
OECD Search and Extract Data from the OECD
OEFPIL Optimal Estimation of Function Parameters by
Iterated Linearization
OGI Objective General Index
OHPL Ordered Homogeneity Pursuit Lasso for Group
Variable Selection
OLCPM Online Change Point Detection for Matrix-Valued
Time Series
OLSengine Transparent and Assisted Linear Modeling Engine
OLStrajr Ordinary Least Squares Trajectory Analysis
ONAM Fitting Interpretable Neural Additive Models
Using Orthogonalization
ONEST Observers Needed to Evaluate Subjective Tests
OOBCurve Out of Bag Learning Curve
OOR Optimistic Optimization in R
OPC The Online Principal Component Estimation
Method
OPCreg Online Principal Component Regression for
Online Datasets
OPDOE Optimal Design of Experiments
OPI Open Perimetry Interface
OPL Optimal Policy Learning
OPSR Ordered Probit Switching Regression
OPTS Optimization via Subsampling (OPTS)
OPTeCD Optimal Partial Tetra-Allele Cross Designs
OPTtesting Optimal Testing
ORCME Order Restricted Clustering for Microarray
Experiments
ORFID Manage and Summarize Data from Oregon RFID ORMR
and ORSR Antenna Readers
ORION Ordinal Relations
ORIONZ.G EAP Scoring in Exploratory FA Solutions with
Correlated Residuals
ORKM The Online Regularized K-Means Clustering
Algorithm
ORTH.Ord Alternating Logistic Regression with
Orthogonalized Residuals for Correlated Ordinal
Outcomes
ORTSC Connects to Google Cloud API for Label
Detection
ORscraper Extract Information from Clinical Reports from
'Oncomine Reporter' and NCBI 'ClinVar'
OSAT OSAT: Optimal Sample Assignment Tool
OSCARS Global Bounded Optimization by the OSCARS-II
Algorithm
OSCV One-Sided Cross-Validation
OSDR Finds an Optimal System of Distinct
Representatives
OSFD Output Space-Filling Design
OSIRCR Cosine Regression-Based Online Sliced Inverse
Regression Algorithm
OSLdecomposition Signal Component Analysis for Optically
Stimulated Luminescence
OSMscale Add a Scale Bar to 'OpenStreetMap' Plots
OSNMTF Orthogonal Sparse Non-Negative Matrix
Tri-Factorization
OSsurvival Assessing Surrogacy with a Censored Outcome
OTBsegm Apply Unsupervised Segmentation Algorithms from
'OTB'
OTE Optimal Trees Ensembles for Regression,
Classification and Class Membership Probability
Estimation
OTRselect Variable Selection for Optimal Treatment
Decision
OTUtable North Temperate Lakes - Microbial Observatory
16S Time Series Data and Functions
OTclust Mean Partition, Uncertainty Assessment, Cluster
Validation and Visualization Selection for
Cluster Analysis
OTrecod Data Fusion using Optimal Transportation Theory
OUwie Analysis of Evolutionary Rates in an OU
Framework
OVL.CI Inference on the Overlap Coefficient
OVtool Omitted Variable Tool
OWEA Optimal Weight Exchange Algorithm for Optimal
Designs for Three Models
Oarray Arrays with Arbitrary Offsets
OasisR Outright Tool for the Analysis of Spatial
Inequalities and Segregation
Observation Collect and Process Physical Activity Direct
Observation Data
OceanView Visualisation of Oceanographic Data and Model
Output
OddsPlotty Odds Plot to Visualise a Logistic Regression
Model
OdysseusCharacterizationModule
Handy and Minimalistic Common Data Model
Characterization
OdysseusPathwayModule Cohort Pathway Analysis with Pre-Index Event
Support
OdysseusSurvivalModule
Cohort-Based Single-Event Survival Utilities
OenoKPM Modeling the Kinetics of Carbon Dioxide
Production in Alcoholic Fermentation
OhdsiReportGenerator Observational Health Data Sciences and
Informatics Report Generator
OhdsiShinyAppBuilder Viewing Observational Health Data Sciences and
Informatics Results via 'shiny' Modules
Ohit OGA+HDIC+Trim and High-Dimensional Linear
Regression Models
OkNNE A k-Nearest Neighbours Ensemble via Optimal
Model Selection for Regression
OlinkAnalyze Facilitate Analysis of Proteomic Data from
Olink
OlinkAnalyzeVignettes Vignettes for Analyzing Data using
'OlinkAnalyze'
OlympicRshiny 'Shiny' Application for Olympic Data
OmegaG Omega-Generic: Composite Reliability of
Multidimensional Measures
OmicFlow Fast and Efficient (Automated) Analysis of
Sparse Omics Data
OmicKriging Poly-Omic Prediction of Complex TRaits
OmicNavigator Open-Source Software for 'Omic' Data Analysis
and Visualization
OmicNetR Network-Based Integration of Multi-Omics Data
Using Sparse CCA
OmicSense Biosensor Development using Omics Data
OmicsPLS Data Integration with Two-Way Orthogonal
Partial Least Squares
OmicsPrepR Unified Preprocessing Toolkit for Proteomics
and Metabolomics
OmicsQC Nominating Quality Control Outliers in Genomic
Profiling Studies
Omisc DeFries-Fulker Analysis and Univariate
Bootstrapping
OmopConstructor Build Tables in the OMOP Common Data Model
OmopOnSpark Using a Common Data Model on 'Spark'
OmopSketch Characterise Tables of an OMOP Common Data
Model Instance
OmopStudyBuilder Build Reproducible Network Studies for OMOP
Common Data Model
OmopViewer Visualise OMOP Results using 'shiny'
Applications
OnAge Test of Between-Group Differences in the Onset
of Senescence
OncoDataSets A Comprehensive Collection of Cancer Types and
Cancer-Related Datasets
OncoSubtype Predict Cancer Subtypes Based on TCGA Data
using Machine Learning Method
Oncofilterfast Aids in the Analysis of Genes Influencing
Cancer Survival
Oncotree Estimating Oncogenetic Trees
One4All Validate, Share, and Download Data
OneArm2stage Phase II Single-Arm Two-Stage Designs with
Time-to-Event Outcomes
OneArmTTE One-Arm Clinical Trial Designs for
Time-to-Event Endpoint
OneR One Rule Machine Learning Classification
Algorithm with Enhancements
OneSampleLogRankTest One-Sample Log-Rank Test
OneSampleMR One Sample Mendelian Randomization and
Instrumental Variable Analyses
OneStep One-Step Estimation
OneTwoSamples Deal with One and Two (Normal) Samples
OnlineSurr Surrogate Evaluation for Jointly Longitudinal
Outcome and Surrogate
OnomasticDiversity Onomastic Diversity Measures
OofAExp Order-of-Addition Experiments
OpEnCAST Optimized Ensemble Model for C and A
Methylation Search in Plant
OpEnHiMR Optimization Based Ensemble Model for
Prediction of Histone Modifications in Rice
OpeNoise Environmental Noise Pollution Data Analysis
Open.Visualization.Academy
Content to Support Classes Taught Through the
Open Visualization Academy
OpenBARD Open British Arboricultural Record Dataset
OpenCL Interface allowing R to use OpenCL
OpenImageR An Image Processing Toolkit
OpenML Open Machine Learning and Open Data Platform
OpenMindat Quickly Retrieve Datasets from the 'Mindat' API
OpenMx Extended Structural Equation Modelling
OpenRange Code to Access Open Access Species Range Maps
OpenRepGrid Tools to Analyze Repertory Grid Data
OpenRepGrid.ic Interpretive Clustering for Repertory Grids
OpenSourceAP.DownloadR
Download Open Source Asset Pricing (OpenAP)
Data Directly
OpenSpecy Analyze, Process, Identify, and Share Raman and
(FT)IR Spectra
OpenStreetMap Access to Open Street Map Raster Images
Opportunistic Routing Distribution, Broadcasts, Transmissions
and Receptions in an Opportunistic Network
Opt5PL Optimal Designs for the 5-Parameter Logistic
Model
OptCirClust Circular, Periodic, or Framed Data Clustering:
Fast, Optimal, and Reproducible
OptGS Near-Optimal Group-Sequential Designs for
Continuous Outcomes
OptHedging Estimation of value and hedging strategy of
call and put options.
OptHoldoutSize Estimation of Optimal Size for a Holdout Set
for Updating a Predictive Score
OptM Estimating the Optimal Number of Migration
Edges from 'Treemix'
OptOTrials Optimal Two-Stage Designs for Ordered
Categorical Outcomes
OptSig Optimal Level of Significance for Regression
and Other Statistical Tests
OptimModel Perform Nonlinear Regression Using 'optim' as
the Optimization Engine
OptimaRegion Confidence Regions for Optima of Response
Surfaces
OptimalBinningWoE Optimal Binning and Weight of Evidence
Framework for Modeling
OptimalCutpoints Computing Optimal Cutpoints in Diagnostic Tests
OptimalDesign A Toolbox for Computing Efficient Designs of
Experiments
OptimalRerandExpDesigns
Optimal Rerandomization Experimental Designs
OptimalSurrogate Model Free Approach to Quantifying Surrogacy
OptimalTiming Optimal Timing Identification
OptionPricing Option Pricing with Efficient Simulation
Algorithms
OralOpioids Retrieving Oral Opioid Information
Orangutan Automated Analysis of Phenotypic Data
Orcs Omnidirectional R Code Snippets
OrdCD Ordinal Causal Discovery
OrdFacReg Least Squares, Logistic, and Cox-Regression
with Ordered Predictors
OrdMonReg Compute Least Squares Estimates of One Bounded
or Two Ordered Isotonic Regression Curves
OrdNor Concurrent Generation of Ordinal and Normal
Data with Given Correlation Matrix and Marginal
Distributions
OrgHeatmap Visualization Tool for Numerical Data on
Human/Mouse Organs and Organelles
OrgMassSpecR Organic Mass Spectrometry
OrganismDbi Software to enable the smooth interfacing of
different database packages
OrigamiPlot A Visualization Tool Enhancing Radar Plot
Visualizations for Multivariate Data
OrthoPanels Dynamic Panel Models with Orthogonal
Reparameterization of Fixed Effects
OryzaProbe Rice Microarray Probe ID Conversion, from Probe
ID to RAP-DB ID
OscillatorGenerator Generation of Customizable, Discretized Time
Series of Oscillating Species
OssaNMA Optimal Sample Size and Allocation with a
Network Meta-Analysis
Ostats O-Stats, or Pairwise Community-Level Niche
Overlap Statistics
OtsuFire Fire Scars, Severity and Regeneration Mapping
Using 'Otsu' Thresholding
OtsuSeg Raster Thresholding Using Otsu´s Algorithm
OutSeekR Statistical Approach to Outlier Detection in
RNA-Seq and Related Data
OutcomeWeights Outcome Weights of Treatment Effect Estimators
OutliersLearn Educational Outlier Package with Common Outlier
Detection Algorithms
OutliersO3 Draws Overview of Outliers (O3) Plots
OwenQ Owen Q-Function
OxSR Soil Iron Oxides via Diffuse Reflectance
OxyBS Processing of Oxy-Bisulfite Microarray Data
PAC Partition-Assisted Clustering and Multiple
Alignments of Networks
PACVr Plastome Assembly Coverage Visualization
PADOG Pathway Analysis with Down-weighting of
Overlapping Genes (PADOG)
PAFit Generative Mechanism Estimation in Temporal
Complex Networks
PAGE Predictor-Assisted Graphical Models under
Error-in-Variables
PAGFL Joint Estimation of Latent Groups and
Group-Specific Coefficients in (Time-Varying)
Panel Data Models
PAGWAS Pathway Analysis Methods for Genomewide
Association Data
PAICE Phylogeographic Analysis of Island Colonization
Events
PAMhm Generate Heatmaps Based on Partitioning Around
Medoids (PAM)
PAMmisc Miscellaneous Functions for Passive Acoustic
Analysis
PAMpal Load and Process Passive Acoustic Data
PAMscapes Tools for Summarising and Analysing Soundscape
Data
PANACEA Personalized Network-Based Anti-Cancer Therapy
Evaluation
PANPRSnext Building PRS Models Based on Summary Statistics
of GWAs
PAS Polygenic Analysis System (PAS)
PASSED Calculate Power and Sample Size for Two Sample
Mean Tests
PASWR Probability and Statistics with R
PASWR2 Probability and Statistics with R, Second
Edition
PAutilities Streamline Physical Activity Research
PBD Protracted Birth-Death Model of Diversification
PBIBD Partially Balanced Incomplete Block Designs
PBIR Estimating the Probability of Being in Response
and Related Outcomes
PBImisc A Set of Datasets Used in My Classes or in the
Book 'Modele Liniowe i Mieszane w R, Wraz z
Przykladami w Analizie Danych'
PBNPA Permutation Based Non-Parametric Analysis of
CRISPR Screen Data
PBSadmb ADMB for R Using Scripts or GUI
PBSddesolve Solver for Delay Differential Equations
PBSmapping Mapping Fisheries Data and Spatial Analysis
Tools
PBSmodelling GUI Tools Made Easy: Interact with Models and
Explore Data
PBtDesigns Partially Balanced t-Designs (PBtDesigns)
PCADSC Tools for Principal Component Analysis-Based
Data Structure Comparisons
PCAPAM50 Enhanced 'PAM50' Subtyping of Breast Cancer
PCAmatchR Match Cases to Controls Based on Genotype
Principal Components
PCAmixdata Multivariate Analysis of Mixed Data
PCBN Inference of Pair-Copula Bayesian Networks
PCBS Principal Component BiSulfite
PCDimension Finding the Number of Significant Principal
Components
PCFAM Computation of Ancestry Scores with Mixed
Families and Unrelated Individuals
PCGII Partial Correlation Graph with Information
Incorporation
PCGSE Principal Component Gene Set Enrichment
PCL Proximal Causal Learning
PCLassoReg Group Regression Models for Risk Protein
Complex Identification
PCMBase Simulation and Likelihood Calculation of
Phylogenetic Comparative Models
PCMBaseCpp Fast Likelihood Calculation for Phylogenetic
Comparative Models
PCMRS Model Response Styles in Partial Credit Models
PCObw Bandwidth Selector with Penalized Comparison to
Overfitting Criterion
PCPS Principal Coordinates of Phylogenetic Structure
PCRA Companion to Portfolio Construction and Risk
Analysis
PCRedux Quantitative Polymerase Chain Reaction (qPCR)
Data Mining and Machine Learning Toolkit as
Described in Burdukiewicz (2022)
<doi:10.21105/Joss.04407>
PCS Calculate the Probability of Correct Selection
(PCS)
PCSinR Parallel Constraint Satisfaction Networks in R
PCovR Principal Covariates Regression
PCpluS Piecewise Constant Plus Smooth Regression
PDE Extract Tables and Sentences from PDFs with
User Interface
PDEnaiveBayes Plausible Naive Bayes Classifier Using PDE
PDFEstimator Multivariate Nonparametric Probability Density
Estimator
PDIndex Disease Intensity and Progress Curve Indices
for Plant Pathology
PDM Photogrammetric Distances Measurer
PDMIF Fits Heterogeneous Panel Data Models
PDN Personalized Disease Network
PDQutils PDQ Functions via Gram Charlier, Edgeworth, and
Cornish Fisher Approximations
PDSCE Positive Definite Sparse Covariance Estimators
PDShiny 'Probability Distribution Shiny'
PDXpower Time to Event Outcome in Experimental Designs
of Pre-Clinical Studies
PDtoolkit Collection of Tools for PD Rating Model
Development and Validation
PEAXAI Probabilistic Efficiency Analysis Using
Explainable Artificial Intelligence
PEGroupTesting Population Proportion Estimation using Group
Testing
PEIMAN2 Post-Translational Modification Enrichment,
Integration, and Matching Analysis
PEIP Geophysical Inverse Theory and Optimization
PELVIS Probabilistic Sex Estimate using Logistic
Regression, Based on VISual Traits of the Human
Os Coxae
PEPBVS Bayesian Variable Selection using
Power-Expected-Posterior Prior
PERK Predicting Environmental Concentration and Risk
PERMANOVA Multivariate Analysis of Variance Based on
Distances and Permutations
PERSUADE Parametric Survival Model Selection for
Decision-Analytic Models
PEkit Partition Exchangeability Toolkit
PEtests Power-Enhanced (PE) Tests for High-Dimensional
Data
PFCI Penalized Fast Causal Inference for
High-Dimensional Structure Learning
PFIM Population Fisher Information Matrix
PFLR Estimating Penalized Functional Linear
Regression
PFW Filtering and Processing Data from Project
FeederWatch
PGM2 Recursive Construction of Nested Resolvable
Designs and Associated Uniform Designs
PGRdup Discover Probable Duplicates in Plant Genetic
Resources Collections
PGaGEV Power Garima-Generalized Extreme Value
Distribution
PGaovR Analysis of Experimental Data using ANOVA and
Mean Comparison
PH1XBAR Phase I Shewhart X-Bar Chart
PHENIX Phenotypic Integration Index
PHENTHAUproc Phenology Modelling of Thaumetopoea
Processionea
PHEindicatormethods Common Public Health Statistics and their
Confidence Intervals
PHInfiniteEstimates Tools for Inference in the Presence of a
Monotone Likelihood
PHSMM Penalised Maximum Likelihood Estimation for
Hidden Semi-Markov Models
PHYLOGR Functions for Phylogenetically Based
Statistical Analyses
PHclust Poisson Hurdle Clustering for Sparse Microbiome
Data
PHeval Evaluation of the Proportional Hazards
Assumption and Test for Comparing Survival
Curves with a Standardized Score Process
PICBayes Bayesian Models for Partly Interval-Censored
Data
PIE A Partially Interpretable Model with Black-Box
Refinement
PINMA Improved Methods for Constructing Prediction
Intervals for Network Meta-Analysis
PINSPlus Clustering Algorithm for Data Integration and
Disease Subtyping
PINstimation Estimation of the Probability of Informed
Trading
PJCcalculator PROs-Joint Contrast (PJC) Calculator
PJFM Variational Inference for High-Dimensional
Joint Frailty Model
PK Basic Non-Compartmental Pharmacokinetics
PKI Public Key Infrastucture for R Based on the
X.509 Standard
PKLMtest Classification Based MCAR Test
PKNCA Perform Pharmacokinetic Non-Compartmental
Analysis
PKPDindex Optimal PK/PD Index Finder
PKPDsim Tools for Performing
Pharmacokinetic-Pharmacodynamic Simulations
PKbioanalysis Pharmacokinetic Bioanalysis Experiments Design
and Exploration
PKconverter The Parameter Converter of the Pharmacokinetic
Models
PL94171 Tabulate P.L. 94-171 Redistricting Data Summary
Files
PLEXI Multiplex Network Analysis
PLFD Portmanteau Local Feature Discrimination for
Matrix-Variate Data
PLIS Multiplicity Control using Pooled LIS Statistic
PLNmodels Poisson Lognormal Models
PLORN Prediction with Less Overfitting and Robust to
Noise
PLRModels Statistical Inference in Partial Linear
Regression Models
PLUCR Policy Learning Under Constraint
PLindleyROC Receiver Operating Characteristic Based on
Power Lindley Distribution
PLmixed Estimate (Generalized) Linear Mixed Models with
Factor Structures
PLreg Power Logit Regression for Modeling Bounded
Data
PMA Penalized Multivariate Analysis
PMCMR Calculate Pairwise Multiple Comparisons of Mean
Rank Sums
PMCMRplus Calculate Pairwise Multiple Comparisons of Mean
Rank Sums Extended
PMEvapotranspiration Calculation of the Penman-Monteith
Evapotranspiration using Weather Variables
PMLE4SCR Pseudo Maximum Likelihood Estimation for
Semi-Competing Risks Data
PMwR Portfolio Management with R
PNADCperiods Identify Reference Periods in Brazil's PNADC
Survey Data
PNADcIBGE Downloading, Reading and Analyzing PNADC
Microdata
PNAR Poisson Network Autoregressive Models
PNC Phylogenetic Niche Conservatism Analysis for
Ecological Communities
PND.heter.cluster Estimating the Cluster Specific Treatment
Effects in Partially Nested Designs
PNDSIBGE Downloading, Reading and Analyzing PNDS
Microdata - Package in Development
PNSIBGE Downloading, Reading and Analyzing PNS
Microdata
PNWColors Color Palettes Inspired by Nature in the US
Pacific Northwest
POCRE Penalized Orthogonal-Components Regression
POD Probability of Detection for Qualitative PCR
Methods
POET Principal Orthogonal ComplEment Thresholding
(POET) Method
POINT Protein Structure Guided Local Test
POMADE Power for Meta-Analysis of Dependent Effects
POMS Phylogenetic Organization of Metagenomic
Signals
POMaSPU Adaptive Association Tests for Multiple
Phenotypes using Proportional Odds Model
(POM-aSPU)
POPInf Assumption-Lean and Data-Adaptive
Post-Prediction Inference
POSSA Power Simulation for Sequential Analyses and
Multiple Hypotheses
POSTm Phylogeny-Guided OTU-Specific Association Test
for Microbiome Data
POSetR Partially Ordered Sets in R
POT Generalized Pareto Distribution and Peaks Over
Threshold
POV Partition of Variation Variance Component
Analysis Method
PP Person Parameter Estimation
PPCDT An Optimal Subset Selection for Distributed
Hypothesis Testing
PPCI Projection Pursuit for Cluster Identification
PPCSexRx Prescribe Sub-Symptom Exercise for Adolescent
Concussion
PPMR Probabilistic Two Sample Mendelian
Randomization
PPMiss Copula-Based Estimator for Long-Range Dependent
Processes under Missing Data
PPQplan Process Performance Qualification (PPQ) Plans
in Chemistry, Manufacturing and Controls (CMC)
Statistical Analysis
PPRL Privacy Preserving Record Linkage
PPSFS Partial Profile Score Feature Selection in
High-Dimensional Generalized Linear Interaction
Models
PPTS Point Process Time Series
PPTcirc Projected Polya Tree for Circular Data
PPbigdata Projection Pursuit for Big Data Based on Data
Nuggets
PPforest Projection Pursuit Classification Forest
PPtreeExt Projection Pursuit Classification Tree
Extensions
PPtreeViz Projection Pursuit Classification Tree
Visualization
PQA Perform the Pearson-Quetelet Analysis on
Two-Way Contingency Tables
PRANA Pseudo-Value Regression Approach for Network
Analysis (PRANA)
PRBMSdesigns Partially Residual Balanced Multi-Session
Designs
PRDA Conduct a Prospective or Retrospective Design
Analysis
PRECAST Embedding and Clustering with Alignment for
Spatial Omics Datasets
PREPShiny Interactive Document for Preprocessing the
Dataset
PRIMAL Parametric Simplex Method for Sparse Learning
PRIMEplus Study Design for Immunotherapy Clinical Trials
PRISM.forecast Penalized Regression with Inferred Seasonality
Module - Forecasting Unemployment Initial
Claims using 'Google Trends' Data
PRISMA Protocol Inspection and State Machine Analysis
PRISMA2020 Make Interactive 'PRISMA' Flow Diagrams
PRMethods D-Hondt, Sainte-Lague, and Modified
Sainte-Lague Methods for Seat Allocation
PRNG A Pseudo-Random Number Generator
PROJ Generic Coordinate System Transformations Using
'PROJ'
PROMETHEE Preference Ranking Organization METHod for
Enrichment of Evaluations
PROSPER Simulation of Weed Population Dynamics
PROreg Patient Reported Outcomes Regression Analysis
PROscorer Functions to Score Commonly-Used
Patient-Reported Outcome (PRO) Measures and
Other Psychometric Instruments
PROscorerTools Tools to Score Patient-Reported Outcome (PRO)
and Other Psychometric Measures
PROsetta Linking Patient-Reported Outcomes Measures
PRP Bayesian Prior and Posterior Predictive
Replication Assessment
PRROC Precision-Recall and ROC Curves for Weighted
and Unweighted Data
PRTree Probabilistic Regression Trees
PReMiuM Dirichlet Process Bayesian Clustering, Profile
Regression
PResiduals Probability-Scale Residuals and Residual
Correlations
PSAWR 'Pushshift' API Wrapper for 'Reddit' Submission
and Comment Search
PSAboot Bootstrapping for Propensity Score Analysis
PSAgraphics Propensity Score Analysis Graphics
PSCBS Analysis of Parent-Specific DNA Copy Numbers
PSDistr Distributions Derived from Normal Distribution
PSF Forecasting of Univariate Time Series Using the
Pattern Sequence-Based Forecasting (PSF)
Algorithm
PSGD Projected Subset Gradient Descent
PSGoft Modified Lilliefors Goodness-of-Fit Normality
Test
PSIM Preference Selection Index Method (PSIM)
PSIndependenceTest Independence Tests for Two-Way, Three-Way and
Four-Way Contingency Tables
PSLM2015 Pakistan Social and Living Standards
Measurement Survey 2014-15
PSMatch Handling and Managing Peptide Spectrum Matches
PSPI Propensity Score Predictive Inference for
Generalizability
PSPManalysis Analysis of Physiologically Structured
Population Models
PSRICalc Plant Stress Response Index Calculator
PSRICalcSM Plant Stress Response Index Calculator -
Softmax Method
PSSIM Test of Independence & Image Structural
Similarity Measure PSSIM
PSSMCOOL Features Extracted from Position Specific
Scoring Matrix (PSSM)
PSTR Panel Smooth Transition Regression Modelling
PSW Propensity Score Weighting Methods for
Dichotomous Treatments
PScr Estimation for the Power Series Cure Rate Model
PSinference Inference for Released Plug-in Sampling Single
Synthetic Dataset
PSor Semiparametric Principal Stratification
Analysis Beyond Monotonicity
PSpower Sample Size and Power for Propensity Score
Weighted Estimators
PSsurvival Propensity Score Methods for Survival Analysis
PStrata Principal Stratification Analysis in R
PSweight Propensity Score Weighting for Causal Inference
with Observational Studies and Randomized
Trials
PTAk Principal Tensor Analysis on k Modes
PTE Personalized Treatment Evaluator
PTERP PTE and RP for Optimally-Transformed Surrogate
PTMods Managing Post-Translational Modifications in R
PTSDdiag Optimize PTSD Diagnostic Criteria
PTSR Positive Time Series Regression
PTXQC Quality Report Generation for MaxQuant and
mzTab Results
PTwins Percentile Estimation of Fetal Weight for Twins
by Chorionicity
PUGMM Parsimonious Ultrametric Gaussian Mixture
Models
PUMP Power Under Multiplicity Project
PUPAK Parameter Estimation, and Plot Visualization of
Adsorption Kinetic Models
PUPMCR Image-Based Identification of Color Based on
Rayner (1970) Terminology and Known Fungal
Pigments
PUPMSI Moisture Sorption Isotherm Modeling Program
PUlasso High-Dimensional Variable Selection with
Presence-Only Data
PVAClone Population Viability Analysis with Data Cloning
PVBcorrect Partial Verification Bias Correction for
Diagnostic Accuracy
PVR Phylogenetic Eigenvectors Regression and
Phylogentic Signal-Representation Curve
PWEALL Design and Monitoring of Survival Trials
Accounting for Complex Situations
PWEV PSO Based Weighted Ensemble Algorithm for
Volatility Modelling
PWEXP Piecewise Exponential Distribution Prediction
Model
PWIR Provides a Function to Calculate Prize Winner
Indices Based on Bibliometric Data
PaLMr Interface for 'Google Pathways Language Model 2
(PaLM 2)'
PaRe A Way to Perform Code Review or QA on Other
Packages
PacketLLM Interactive 'OpenAI' Model Integration in
'RStudio'
Pade Padé Approximant Coefficients
PairViz Visualization using Graph Traversal
PairedData Paired Data Analysis
PakPC2017 Pakistan Population Census 2017
PakPC2023 Pakistan Population Census 2023
PakPMICS2014Ch Multiple Indicator Cluster Survey (MICS) 2014
Child Questionnaire Data for Punjab, Pakistan
PakPMICS2014HH Multiple Indicator Cluster Survey (MICS) 2014
Household Questionnaire Data for Punjab,
Pakistan
PakPMICS2014HL Multiple Indicator Cluster Survey (MICS) 2014
Household Listing Questionnaire Data for
Punjab, Pakistan
PakPMICS2014Wm Multiple Indicator Cluster Survey (MICS) 2014
Women Questionnaire Data for Punjab, Pakistan
PakPMICS2018 Multiple Indicator Cluster Survey (MICS)
2017-18 Data for Punjab, Pakistan
PakPMICS2018bh Multiple Indicator Cluster Survey (MICS)
2017-18 Birth History of Children Questionnaire
Data for Punjab, Pakistan
PakPMICS2018fs Multiple Indicator Cluster Survey (MICS)
2017-18 Children Age 5-17 Questionnaire Data
for Punjab, Pakistan
PakPMICS2018hh Multiple Indicator Cluster Survey (MICS)
2017-18 Household Questionnaire Data for
Punjab, Pakistan
PakPMICS2018mm Multiple Indicator Cluster Survey (MICS)
2017-18 Maternal Mortality Questionnaire Data
for Punjab, Pakistan
PakPMICS2018mn Multiple Indicator Cluster Survey (MICS)
2017-18 Men Questionnaire Data for Punjab,
Pakistan
PamBinaries Read and Process 'Pamguard' Binary Data
PanJen A Semi-Parametric Test for Specifying
Functional Form
PanelCount Random Effects and/or Sample Selection Models
for Panel Count Data
PanelMatch Matching Methods for Causal Inference with
Time-Series Cross-Sectional Data
PanelSelect Panel Sample Selection Models
PanelTM Two- And Three-Way Dynamic Panel Threshold
Regression Model for Change Point Detection
PantaRhei Plots Sankey Diagrams
ParCC Parameter Converter and Calculator for Health
Technology Assessment
ParDNAcopy Parallel implementation of the "segment"
function of package "DNAcopy"
ParallelLogger Support for Parallel Computation, Logging, and
Function Automation
ParallelTree Visualizing Multilevel Data with Parallel Tree
Plots
ParamANOVA Fully Parameterizable ANOVA Tests
ParamHelpers Helpers for Parameters in Black-Box
Optimization, Tuning and Machine Learning
Pareto The Pareto, Piecewise Pareto and Generalized
Pareto Distribution
ParetoPosStable Computing, Fitting and Validating the PPS
Distribution
Paris2024Colours Color Palettes Inspired by Paris 2024 Olympic
and Paralympic Games
ParmOff Complex Argument Matching
PartCensReg Estimation and Diagnostics for Partially Linear
Censored Regression Models Based on
Heavy-Tailed Distributions
PartialNetwork Estimating Peer Effects Using Partial Network
Data
PartialTL Partial Transfer Learning for Causal Estimation
Partiallyoverlapping Partially Overlapping Samples Tests
Path.Analysis Path Coefficient Analysis
PathwaySpace Spatial Projection of Network Signals along
Geodesic Paths
PathwayVote Robust Pathway Enrichment for DNA Methylation
Studies Using Ensemble Voting
PatientGenerator Generator of Synthetic Patient Data for the
OMOP Common Data Model
PatientLevelPrediction
Develop Clinical Prediction Models Using the
Common Data Model
PatientProfiles Identify Characteristics of Patients in the
OMOP Common Data Model
Patterns Deciphering Biological Networks with Patterned
Heterogeneous Measurements
PeakError Compute the Label Error of Peak Calls
PeakSegDP Dynamic Programming Algorithm for Peak
Detection in ChIP-Seq Data
PeakSegDisk Disk-Based Constrained Change-Point Detection
PeakSegJoint Joint Peak Detection in Several ChIP-Seq
Samples
PeakSegOptimal Optimal Segmentation Subject to Up-Down
Constraints
PearsonDS Pearson Distribution System
PearsonICA Independent Component Analysis using Score
Functions from the Pearson System
Pedixplorer Pedigree Functions
PeerPerformance Luck-Corrected Peer Performance Analysis in R
PenCoxFrail Regularization in Cox Frailty Models
PenIC Semiparametric Regression Analysis of
Interval-Censored Data using Penalized Splines
PenguinR A Comprehensive Collection of Penguin Datasets
for Statistical Analysis and Experimental
Design
PepMapViz A Versatile Toolkit for Peptide Mapping,
Visualization, and Comparative Exploration
Peptides Calculate Indices and Theoretical
Physicochemical Properties of Protein Sequences
PerFit Person Fit
PerMat Performance Metrics in Predictive Modeling
PerRegMod Fitting Periodic Coefficients Linear Regression
Models
Perc Using Percolation and Conductance to Find
Information Flow Certainty in a Direct Network
PerfMeas Performance Measures for Ranking and
Classification Tasks
PerformanceAnalytics Econometric Tools for Performance and Risk
Analysis
PeriodicTable Periodic Table of the Elements
PermAlgo Permutational Algorithm to Simulate Survival
Data
PermCor Robust Permutation Tests of Correlation
Coefficients
PermutationR Conduct Permutation Analysis of Variance in R
PersomicsArray Automated Persomics Array Image Extraction
PeruAPIs Access Peruvian Data via Public APIs and
Curated Datasets
PesticideLoadIndicator
Computes Danish Pesticide Load Indicator
PhaseGMM Phase-Function Based Estimation and Inference
for Linear Errors-in-Variables (EIV) Models
PhaseType Inference for Phase-Type Distributions
PhaseTypeR General-Purpose Phase-Type Functions
PheCAP High-Throughput Phenotyping with EHR using a
Common Automated Pipeline
PheNorm Unsupervised Gold-Standard Label Free
Phenotyping Algorithm for EHR Data
PheVis Automatic Phenotyping of Electronic Health
Record at Visit Resolution
PhenoSpectra Multispectral Data Analysis and Visualization
Phenotype A Tool for Phenotypic Data Processing
PhenotypeR Assess Study Cohorts Using a Common Data Model
Phi2rho Owen's T Function and Bivariate Normal Integral
PhilipsHue R Interface to the Philips Hue API
PhoneValidator Client for 'GenderAPI.io' Phone Number
Validation and Formatter API
PhotoGEA Photosynthetic Gas Exchange Analysis
PhotosynQ Connect to PhotosynQ
PhySortR A Fast, Flexible Tool for Sorting Phylogenetic
Trees
PhylogeneticEM Automatic Shift Detection using a Phylogenetic
EM
PhysActBedRest Marks Periods of 'Bedrest' in Actigraph
Accelerometer Data
PhysicalActivity Process Accelerometer Data for Physical
Activity Measurement
PhysioIndexR Physiological and Stress Indices for Crop
Evaluation
PhytoIn Vegetation Analysis and Forest Inventory
PhytosanitaryCalculator
Phytosanitary Calculator for Inspection Plans
Based on Risks
PiC Pointcloud Interactive Computation
PieGlyph Axis Invariant Scatter Pie Plots
Pijavski Global Univariate Minimization
Pinference Probability Inference for Propositional Logic
PivotalP Prediction for Future Data from Mixture
Distributions Gamma, Beta, Weibull and Normal
PlackettLuce Plackett-Luce Models for Rankings
Planesmuestra Functions for Calculating Dodge Romig, MIL STD
105E and MIL STD 414 Acceptance Sampling Plan
PlanetNICFI Processing of the 'Planet NICFI' Satellite
Imagery
PlasmaMutationDetector
Tumor Mutation Detection in Plasma
PlateVision Automated qPCR Analysis and Visual Quality
Control
PlatformDesign Optimal Two-Period Multiarm Platform Design
with New Experimental Arms Added During the
Trial
PlayerChart Generate Pizza Chart: Player Stats 0-100
PlayerRatings Dynamic Updating Methods for Player Ratings
Estimation
PlotBivInvGaus Density Contour Plot for Bivariate Inverse
Gaussian Distribution
PlotContour Plot Contour Line
PlotFTIR Plot FTIR Spectra
PlotNormTest Graphical Univariate/Multivariate Assessments
for Normality Assumption
PlotPrjNetworks Useful Networking Tools for Project Management
PlotTools Extended Tools for Continuous Legends, Polygon
Manipulation, and Visual Display of Categorical
Data
PnT Peak Finder
PoDBAY Vaccine Efficacy Estimation Package
PoPdesign Posterior Predictive (PoP) Design for Phase I
Clinical Trials
PoSI Valid Post-Selection Inference for Linear LS
Regression
PoSIAdjRSquared Post-Selection Inference for Adjusted R Squared
PogromcyDanych DataCrunchers (PogromcyDanych) is the Massive
Online Open Course that Brings R and Statistics
to the People
PoiClaClu Classification and Clustering of Sequencing
Data Based on a Poisson Model
PointFore Interpretation of Point Forecasts as
State-Dependent Quantiles and Expectiles
PointedSDMs Fit Models Derived from Point Processes to
Species Distributions using 'inlabru'
PoisBinNonNor Data Generation with Poisson, Binary and
Continuous Components
PoisBinOrd Data Generation with Poisson, Binary and
Ordinal Components
PoisBinOrdNonNor Generation of Up to Four Different Types of
Variables
PoisBinOrdNor Data Generation with Poisson, Binary, Ordinal
and Normal Components
PoisNonNor Simultaneous Generation of Count and Continuous
Data
PoisNor Simultaneous Generation of Multivariate Data
with Poisson and Normal Marginals
PoissonBinomial Efficient Computation of Ordinary and
Generalised Poisson Binomial Distributions
PoissonMultinomial The Poisson-Multinomial Distribution
PoissonPCA Poisson-Noise Corrected PCA
PolarCAP Access the Polarization in Comparative
Attitudes Project
PolicyPortfolios Tools for Managing, Measuring and Visualizing
Policy Portfolios
PolisheR Interfacing 'NaileR' with 'Shiny'
Poly4AT Access 'INVEKOS' API for Field Polygons
PolyHaplotyper Assignment of Haplotypes Based on SNP Dosages
in Diploids and Polyploids
PolyMigR Analysis of Polyphenol Migration from Packaging
Films
PolyPatEx Paternity Exclusion in Autopolyploid Species
PolyTree Estimate Causal Polytree from Data
Polychrome Qualitative Palettes with Many Colors
PolycrossDesigns Polycross Designs ("PolycrossDesigns")
PolynomF Polynomials in R
Pomic Pattern Oriented Modelling Information
Criterion
PoolBal Balancing Central and Marginal Rejection of
Pooled p-Values
PoolDilutionR Calculate Gross Biogeochemical Flux Rates from
Isotope Pool Dilution Data
PooledCohort Predicted Risk for CVD using Pooled Cohort
Equations, PREVENT Equations, and Other
Contemporary CVD Risk Calculators
PooledMeanGroup Pooled Mean Group Estimation of Dynamic
Heterogenous Panels
PopComm Population-Level Cell-Cell Communication
Analysis Tools
PopED Population (and Individual) Optimal
Experimental Design
PopGenHelpR Streamline Population Genomic and Genetic
Analyses
PopGenReport A Simple Framework to Analyse Population and
Landscape Genetic Data
PopPsiSeqR Process and Visualize Evolve & Resequence
Experiments
PopVar Genomic Breeding Tools: Genetic Variance
Prediction and Cross-Validation
PopulateR Create Data Frames for the Micro-Simulation of
Human Populations
PopulationGrowthR Linear Population Growth Scenarios
PortalHacienda Acceder Con R a Los Datos Del Portal De
Hacienda
PortfolioAnalytics Portfolio Analysis, Including Numerical Methods
for Optimization of Portfolios
PortfolioOptim Small/Large Sample Portfolio Optimization
PortfolioTesteR Test Investment Strategies with English-Like
Code
PosRatioDist Quotient of Random Variables Conditioned to the
Positive Quadrant
PosiR Post-Selection Inference via Simultaneous
Confidence Intervals
PostcodesioR API Wrapper Around 'Postcodes.io'
PosteriorBootstrap Non-Parametric Sampling with Parallel Monte
Carlo
PottsUtils Utility Functions of the Potts Models
PowRPriori Power Analysis via Data Simulation for
(Generalized) Linear Mixed Effects Models
PoweR Computation of Power and Level Tables for
Hypothesis Tests
PoweREST A Bootstrap-Based Power Estimation Tool for
Spatial Transcriptomics
Power2Stage Power and Sample-Size Distribution of 2-Stage
Bioequivalence Studies
PowerSDI Calculate Standardised Drought Indices Using
NASA POWER Data
PowerTOST Power and Sample Size for (Bio)Equivalence
Studies
PrInDT Prediction and Interpretation in Decision Trees
for Classification and Regression
PracTools Designing and Weighting Survey Samples
PracticalEquiDesign Design of Practical Equivalence Trials
PreKnitPostHTMLRender Pre-Knitting Processing and Post HTML-Rendering
Processing
PreProcess Basic Functions for Pre-Processing Microarrays
PreProcessRecordLinkage
Preprocessing Record Linkage
PreProcessing Various Preprocessing Transformations of
Numeric Data Matrices
PreciseSums Accurate Floating Point Sums and Products
PredPsych Predictive Approaches in Psychology
PredTest Preparing Data For, and Calculating the
Prediction Test
PredictABEL Assessment of Risk Prediction Models
PredictionR Prediction for Future Data from any Continuous
Distribution
PredictorSelect Out-of-Sample Predictability in Predictive
Regressions with Many Predictor Candidates
PresenceAbsence Presence-Absence Model Evaluation
PressPurt Indeterminacy of Networks via Press
Perturbations
PrettyCols Pretty Colour Palettes
PriceIndices Calculating Bilateral and Multilateral Price
Indexes
PriorGen Generates Prior Distributions for Proportions
PrivateLR Differentially Private Regularized Logistic
Regression
ProAE PRO-CTCAE Scoring, Analysis, and Graphical
Tools
ProActive Detect Elevations and Gaps in Mapped Sequencing
Read Coverage
ProDenICA Product Density Estimation for ICA using Tilted
Gaussian Density Estimates
ProFAST Probabilistic Factor Analysis for
Spatially-Aware Dimension Reduction
ProPublicaR Access Functions for ProPublica's APIs
ProSGPV Penalized Regression with Second-Generation
P-Values
ProSportsDraftData Professional Sports Draft Data
ProTrackR Manipulate and Play 'ProTracker' Modules
ProTrackR2 Manipulate and Play 'ProTracker' Modules
ProbBayes Probability and Bayesian Modeling
ProbBreed Probability Theory for Selecting Candidates in
Plant Breeding
ProbMarg Computing Logit & Probit Predicted
Probabilities & Marginal Effects
ProbSamplingI Probabilistic Sampling Design and Strategies
ProbYX Inference for the Stress-Strength Model R =
P(Y<X)
ProbeDeveloper Develop Hybridization Probes
ProbitSpatial Probit with Spatial Dependence, SAR, SEM and
SARAR Models
ProcData Process Data Analysis
ProcMod Informative Procrustean Matrix Correlation
ProduceR Concise and Efficient Tools for Everyday
Statistical Production
ProfessR Grades Setting and Exam Maker
ProfileGLMM Bayesian Profile Regression using Generalised
Linear Mixed Models
ProfileLadder Functional-Based Chain Ladder for Claims
Reserving
ProfileLikelihood Profile Likelihood for a Parameter in Commonly
Used Statistical Models
ProjectManagement Management of Deterministic and Stochastic
Projects
ProjectTemplate Automates the Creation of New Statistical
Analysis Projects
ProjectionBasedClustering
Projection Based Clustering
ProliferativeIndex Calculates and Analyzes the Proliferative Index
PrometheeTools PROMETHEE and GLNF for Ranking and Sorting
Problems
PropCIs Various Confidence Interval Methods for
Proportions
PropClust Propensity Clustering and Decomposition
PropScrRand Propensity Score Methods for Assigning
Treatment in Randomized Trials
ProtGenerics Generic infrastructure for Bioconductor mass
spectrometry packages
ProteinPCA Principal Component Analysis (PCA) Tool on
Protein Expression Data
ProteoBayes Bayesian Statistical Tools for Quantitative
Proteomics
ProteoMM Multi-Dataset Model-based Differential
Expression Proteomics Analysis Platform
ProxReg Linear Models for Prediction and Classification
using Proximal Operators
Przewodnik Datasets and Functions Used in the Book
'Przewodnik po Pakiecie R'
PsiUEngineRL Homotopy Type Theory Engine for Reinforcement
Learning
Pstat Assessing Pst Statistics
PsyControl CUSUM Person Fit Statistics
PsyToolkit Analysis Tools for 'PsyToolkit'
PsychWordVec Word Embedding Research Framework for
Psychological Science
PtProcess Time Dependent Point Process Modelling
PubChemR Interface to the 'PubChem' Database for
Chemical Data Retrieval
PubMatrixR PubMed Pairwise Co-Occurrence Matrix
Construction and Visualization
PubMedMining Text-Mining of the 'PubMed' Repository
PubMedWordcloud 'Pubmed' Word Clouds
PublicationBias Sensitivity Analysis for Publication Bias in
Meta-Analyses
PublicationBiasBenchmark
Benchmark for Publication Bias Correction
Methods
Publish Format Output of Various Routines in a Suitable
Way for Reports and Publication
PulmoDataSets A Curated Collection of Pulmonary and
Respiratory Disease Datasets
PupilPre Preprocessing Pupil Size Data
PupillometryR A Unified Pipeline for Pupillometry Data
PurpleAir Query the 'PurpleAir' Application Programming
Interface
PurpleAirAPI Historical Data Retrieval from 'PurpleAir'
Sensors via API
Pursuit Projection Pursuit
Pv3Rs Estimate the Cause of Recurrent Vivax Malaria
using Genetic Data
PvSTATEM Reading, Quality Control and Preprocessing of
MBA (Multiplex Bead Assay) Data
PwePred Event/Timeline Prediction Model Based on
Piecewise Exponential
PwrGSD Power in a Group Sequential Design
PxWebApiData PX-Web Data by API
PytrendsLongitudinalR Create Longitudinal Google Trends Data
Q2q Interpolating Age-Specific Mortality Rates at
All Ages
Q7 Types and Features for Object Oriented
Programming
QAEnsemble Ensemble Quadratic and Affine Invariant Markov
Chain Monte Carlo
QAIG Automatic Item Generator for Quantitative
Multiple-Choice Items
QBMS Query the Breeding Management System(s)
QCA Qualitative Comparative Analysis
QCAcluster Tools for the Analysis of Clustered Data in QCA
QCEWAS Fast and Easy Quality Control of EWAS Results
Files
QCGWAS Quality Control of Genome Wide Association
Study Results
QCSIS Sure Independence Screening via Quantile
Correlation and Composite Quantile Correlation
QCSimulator A 5-Qubit Quantum Computing Simulator
QDComparison Modern Nonparametric Tools for Two-Sample
Quantile and Distribution Comparisons
QF Density, Cumulative and Quantile Functions of
Quadratic Forms
QFASA Quantitative Fatty Acid Signature Analysis
QFRM Pricing of Vanilla and Exotic Option Contracts
QFeatures Quantitative features for mass spectrometry
data
QGA Quantum Genetic Algorithm
QGameTheory Quantum Game Theory Simulator
QGglmm Estimate Quantitative Genetics Parameters from
Generalised Linear Mixed Models
QHOT QTL Hotspot Detection
QHScrnomo Construct Nomograms for Competing Risks
Regression Models
QI Quantity-Intensity Relationship of Soil
Potassium
QQreflimits Reference Limits using QQ Methodology
QR QR Factorization without Pivoting
QR.break Structural Breaks in Quantile Regression
QRAGadget A 'Shiny' Gadget for Interactive 'QRA'
Visualizations
QRISK3 10-Year Cardiovascular Disease Risk Calculator
(QRISK3 2017)
QRIpkg Quantile Regression Index Score
QRM Provides R-Language Code to Examine
Quantitative Risk Management Concepts
QRank A Novel Quantile Regression Approach for eQTL
Discovery
QSARdata Quantitative Structure Activity Relationship
(QSAR) Data Sets
QSutils Quasispecies Diversity
QTE.RD Quantile Treatment Effects under the Regression
Discontinuity Design
QTL.gCIMapping QTL Genome-Wide Composite Interval Mapping
QTL.gCIMapping.GUI QTL Genome-Wide Composite Interval Mapping with
Graphical User Interface
QTLEMM QTL EM Algorithm Mapping and Hotspots Detection
QTLRel Tools for Mapping of Quantitative Traits of
Genetically Related Individuals and Calculating
Identity Coefficients from Pedigrees
QUALYPSO Partitioning Uncertainty Components of an
Incomplete Ensemble of Climate Projections
QWDAP Quantum Walk-Based Data Analysis and Prediction
QZ Generalized Eigenvalues and QZ Decomposition
Qapprox Approximation to the Survival Functions of
Quadratic Forms of Gaussian Variables
Qest Quantile-Based Estimator
Qindex Continuous and Dichotomized Index Predictors
Based on Distribution Quantiles
Qindex.data Data for Package 'Qindex'
QoLMiss Scales Score Calculation from Quality of Life
Data
Qploidy Estimation of Ploidy and Detection of
Aneuploidy Using Genotyping Data
QregBB Block Bootstrap Methods for Quantile Regression
in Time Series
QsRutils R Functions Useful for Community Ecology
Qtools Utilities for Quantiles
QuClu Quantile-Based Clustering Algorithms
QuESTr Constructing Quantitative Environment Sensor
using Transcriptomes
QuICSeedR Analyze Data for Fluorophore-Assisted Seed
Amplification Assays
QuadRoot Quadratic Root for any Quadratic Equation
QuadratiK Collection of Methods Constructed using
Kernel-Based Quadratic Distances
QualityMeasure Methods for Analyzing Quality Measure
Performance
QuanDA Quantile-Based Discriminant Analysis for
High-Dimensional Imbalanced Classification
QuantBondCurves Calculates Bond Values and Interest Rate Curves
for Finance
QuantPsyc Quantitative Psychology Tools
QuantRegGLasso Adaptively Weighted Group Lasso for
Semiparametric Quantile Regression Models
QuantileGH Quantile Least Mahalanobis Distance Estimator
for Tukey g-&-h Mixture
QuantileNPCI Nonparametric Confidence Intervals for
Quantiles
QuantileOnQuantile Quantile-on-Quantile Regression Analysis
QuantilePeer Quantile Peer Effect Models
Quartet Comparison of Phylogenetic Trees Using Quartet
and Split Measures
QuickExplore Interactive Dataset Explorer for 'R' and 'SAS'
and Other Data Formats
QuickJSR Interface for the 'QuickJS-NG' Lightweight
'JavaScript' Engine
QurvE Robust and User-Friendly Analysis of Growth and
Fluorescence Curves
Qval The Q-Matrix Validation Methods Framework
R.AlphA.Home Feel at Home using R, Thanks to Shortcuts
Functions Making it Simple
R.ComDim Common Dimensions (ComDim) Multi-Block Analysis
R.cache Fast and Light-Weight Caching (Memoization) of
Objects and Results to Speed Up Computations
R.devices Unified Handling of Graphics Devices
R.filesets Easy Handling of and Access to Files Organized
in Structured Directories
R.huge Methods for Accessing Huge Amounts of Data
[deprecated]
R.matlab Read and Write MAT Files and Call MATLAB from
Within R
R.methodsS3 S3 Methods Simplified
R.oo R Object-Oriented Programming with or without
References
R.rsp Dynamic Generation of Scientific Reports
R.temis Integrated Text Mining Solution
R.utils Various Programming Utilities
R0 Estimation of R0 and Real-Time Reproduction
Number from Epidemics
R1magic Compressive Sampling: Sparse Signal Recovery
Utilities
R2Addhaz R2 Measure of Explained Variation under the
Additive Hazards Model
R2BEAT Multistage Sampling Allocation and Sample
Selection
R2BayesX Estimate Structured Additive Regression Models
with 'BayesX'
R2D2ordinal Implements Pseudo-R2D2 Prior for Ordinal
Regression
R2DT Translation of Base R-Like Functions for
'data.table' Objects
R2HTML HTML Exportation for R Objects
R2MLwiN Running 'MLwiN' from Within R
R2OpenBUGS Running OpenBUGS from R
R2ROC AUC Statistics
R2WinBUGS Running 'WinBUGS' and 'OpenBUGS' from 'R' /
'S-PLUS'
R2admb 'ADMB' to R Interface Functions
R2jags Using R to Run 'JAGS'
R2sample Various Methods for the Two Sample Problem
R2ucare Goodness-of-Fit Tests for Capture-Recapture
Models
R3port Report Functions to Create HTML and PDF Files
R4GoodPersonalFinances
Make Optimal Financial Decisions
R4HCR R for Health Care Research
R4RNA An R package for RNA visualization and analysis
R6 Encapsulated Classes with Reference Semantics
R62S3 Automatic Method Generation from R6
R6DS R6 Reference Class Based Data Structures
R6P Design Patterns in R
R6causal R6 Class for Structural Causal Models
RABR Simulations for Response Adaptive Block
Randomization Design
RAC R Package for Aqua Culture
RADanalysis Normalization and Analysis of Rank Abundance
Distributions
RADstackshelpR Optimize the De Novo Stacks Pipeline via R
RAFS Robust Aggregative Feature Selection
RAGFlowChainR Retrieval-Augmented Generation (RAG) Workflows
in R with Local and Web Search
RAINBOWR Genome-Wide Association Study with SNP-Set
Methods
RALSA R Analyzer for Large-Scale Assessments
RAMP Regularized Generalized Linear Models with
Interaction Effects
RAMpath Structural Equation Modeling Using the
Reticular Action Model (RAM) Notation
RANKS Ranking of Nodes with Kernelized Score
Functions
RANN Fast Nearest Neighbour Search (Wraps ANN
Library) Using L2 Metric
RANSAC Robust Model Fitting Using the RANSAC Algorithm
RAP Reversal Association Pattern Analysis for
Categorical Data
RAPTOR Row and Position Tracheid Organizer
RAQSAPI A Simple Interface to the US EPA Air Quality
System Data Mart API
RARfreq Response Adaptive Randomization with
'Frequentist' Approaches
RARtrials Response-Adaptive Randomization in Clinical
Trials
RAT Research Assessment Tools
RATest Randomization Tests
RAdwords Loading Google Adwords Data into R
RApiDatetime R API for 'Date' and 'Datetime'
RApiSerialize R API Serialization
RAppArmor Bindings to AppArmor and Security Related Linux
Tools
RAthena Connect to 'AWS Athena' using 'Boto3' ('DBI'
Interface)
RBBR Regression-Based Boolean Rule Inference
RBE3 Estimation and Additional Tools for Quantile
Generalized Beta Regression Model
RBF Robust Backfitting
RBGL An interface to the BOOST graph library
RBNZ Download Data from the Reserve Bank of New
Zealand Website
RBPcurve The Residual-Based Predictiveness Curve
RBaM Bayesian Modeling: Estimate a Computer Model
and Make Uncertain Predictions
RBaseX 'BaseX' Client
RBesT R Bayesian Evidence Synthesis Tools
RBtest Regression-Based Approach for Testing the Type
of Missing Data
RCA Relational Class Analysis
RCAL Regularized Calibrated Estimation
RCALI Calculation of the Integrated Flow of Particles
Between Polygons
RCBR Random Coefficient Binary Response Estimation
RCCPCA "Retained Component Criterion for Principal
Component Analysis"
RCEIM R Cross Entropy Inspired Method for
Optimization
RCGLS Download and Open Data Provided by the
Copernicus Global Land Service
RCLabels Manipulate Matrix Row and Column Labels with
Ease
RCMinification Random Coefficient Minification Time Series
Models
RCMsize Sample Size Calculation in Reversible Catalytic
Models
RCNA Robust Copy Number Alteration Detection (RCNA)
RCPA Consensus Pathway Analysis
RCPA3 Data and Functions for R Companion to Political
Analysis 3rd Ed
RCRnorm An Integrated Regression Model for Normalizing
'NanoString nCounter' Data
RCSF Airborne LiDAR Filtering Method Based on Cloth
Simulation
RCT Assign Treatments, Power Calculations,
Balances, Impact Evaluation of Experiments
RCT2 Designing and Analyzing Two-Stage Randomized
Experiments
RCTRecruit Non-Parametric Recruitment Prediction for
Randomized Clinical Trials
RCTS Clustering Time Series While Resisting Outliers
RCTrep Validation of Estimates of Treatment Effects in
Observational Data
RCarb Dose Rate Modelling of Carbonate-Rich Samples
RCaucTile Tile Grid Maps for East Caucasian Languages
RChASM Detection of Chromosomal Aneuploidies in
Ancient DNA Studies
RChest Locating Distributional Changes in Highly
Dependent Time Series
RCircos Circos 2D Track Plot
RClickhouse 'Yandex Clickhouse' Interface for R with Basic
'dplyr' Support
RClimacell R Wrapper for the 'Climacell' API
RCognito A Simplified Interface for 'Amazon Cognito'
RColetum Access your Coletum's Data from API
RColorBrewer ColorBrewer Palettes
RColorConesa Conesa Colors Palette
RConics Computations on Conics
RCriteo Loading Criteo Data into R
RCtest Reality Check and Predictive Ability Tests for
Forecast Evaluation
RCurl General Network (HTTP/FTP/...) Client Interface
for R
RCy3 Functions to Access and Control Cytoscape
RCytoGPS Using Cytogenetics Data in R
RCzechia Spatial Objects of the Czech Republic
RDHonest Honest Inference in Regression Discontinuity
Designs
RDM Quantify Dependence using Rearranged Dependence
Measures
RDML Importing Real-Time Thermo Cycler (qPCR) Data
from RDML Format Files
RDP The Ramer-Douglas-Peucker Algorithm
RDRToolbox A package for nonlinear dimension reduction
with Isomap and LLE.
RDS Respondent-Driven Sampling
RDSsamplesize RDS Sample Size Estimation and Power
Calculation
RDStreeboot RDS Tree Bootstrap Method
RDieHarder R Interface to the 'DieHarder' RNG Test Suite
RDnp Robust Test for Complete Independence in
High-Dimensions
RDota2 An R Steam API Client for Valve's Dota2
REAT Regional Economic Analysis Toolbox
REBayes Empirical Bayes Estimation and Inference
RECA Relevant Component Analysis for Supervised
Distance Metric Learning
REDCapCAST REDCap Metadata Casting and Castellated Data
Handling
REDCapDM 'REDCap' Data Management
REDCapExporter Automated Construction of R Data Packages from
REDCap Projects
REDCapR Interaction Between R and REDCap
REDCapSync Encapsulated 'REDCap' Projects for Synchronized
Data Pipelines
REDCapTidieR Extract 'REDCap' Databases into Tidy 'Tibble's
REDI Robust Exponential Decreasing Index
REEMtree Regression Trees with Random Effects for
Longitudinal (Panel) Data
REFA Robust Exponential Factor Analysis
REFT Root Exudate Feature Toolkit
REMLA Robust Expectation-Maximization Estimation for
Latent Variable Models
REMixed Regularized Estimation in Mixed Effects Model
REN Regularization Ensemble for Robust Portfolio
Optimization
REPLesentR Presentations in the REPL
REPPlab R Interface to 'EPP-Lab', a Java Program for
Exploratory Projection Pursuit
REPPlabShiny 'REPPlab' via a Shiny Application
REPS Hedonic and Multilateral Index Methods for Real
Estate Price Statistics
REQS R/EQS Interface
RESET Reconstruction Set Test
RESI Robust Effect Size Index (RESI) Estimation
RESIDE Rapid Easy Synthesis to Inform Data Extraction
RESS Integrates R and Essentia
RESTK An Implementation of the RESTK Algorithm
REXoplanets Creates Interface with NASA 'Exoplanets Archive
API'
REdaS Companion Package to the Book 'R: Einführung
durch angewandte Statistik'
REddyProc Post Processing of (Half-)Hourly
Eddy-Covariance Measurements
REddyProcNCDF Reading Data from NetCDF Files for 'REddyProc'
REffectivePred Pandemic Prediction Model in an SIRS Framework
REndo Fitting Linear Models with Endogenous
Regressors using Latent Instrumental Variables
RFAE Autoencoding Random Forests
RFIF Fast Iterative Filtering (FIF) with Portable
FFT Backend
RFLPtools Tools to Analyse RFLP Data
RFOC Graphics for Spherical Distributions and
Earthquake Focal Mechanisms
RFPM Floating Percentile Model
RFclust Random Forest Cluster Analysis
RFishBC Back-Calculation of Fish Length
RFlocalfdr Significance Level for Random Forest Impurity
Importance Scores
RFlocalfdr.data Data for the Vignette and Examples in
'RFlocalfdr'
RFmerge Merging of Satellite Datasets with Ground
Observations using Random Forests
RFmstate Random Forest-Based Multistate Survival
Analysis
RFormatter R Source Code Formatter
RFplus Machine Learning for Merging Satellite and
Ground Precipitation Data
RGAN Generative Adversarial Nets (GAN) in R
RGAP Production Function Output Gap Estimation
RGBM LS-TreeBoost and LAD-TreeBoost for Gene
Regulatory Network Reconstruction
RGCCA Regularized and Sparse Generalized Canonical
Correlation Analysis for Multiblock Data
RGCxGC Preprocessing and Multivariate Analysis of
Bidimensional Gas Chromatography Data
RGE Response from Genotype to Environment
RGENERATE Tools to Generate Vector Time Series
RGENERATEPREC Tools to Generate Daily-Precipitation Time
Series
RGF Regularized Greedy Forest
RGIFT Create Quizzes in GIFT Format
RGMM Robust Mixture Model
RGN Robust-Gauss Newton (RGN) Optimization of
Sum-of-Squares Objective Function
RGenData Generates Multivariate Nonnormal Data and
Determines How Many Factors to Retain
RGenetics R packages for genetics research
RGeode Geometric Density Estimation
RGoogleAnalyticsPremium
Unsampled Data in R for Google Analytics
Premium Accounts
RGoogleFit R Interface to Google Fit API
RGraphSpace A Lightweight Interface Between 'igraph' and
'ggplot2' Graphics
RGraphics Data and Functions from the Book R Graphics,
Third Edition
RGreenplum Interface to 'Greenplum' Database
RGremlinsConjoint Estimate the "Gremlins in the Data" Model for
Conjoint Studies
RH2 DBI/RJDBC Interface to H2 Database
RHC Rangeland Health and Condition
RHMS Hydrologic Modelling System for R Users
RHPCBenchmark Benchmarks for High-Performance Computing
Environments
RHRT Heart Rate Turbulence Analysis
RHRV Heart Rate Variability Analysis of ECG Data
RHSDB Ryan-Holm Step-Down Bonferroni or Sidak
Procedure
RHawkes Renewal Hawkes Process
RHclust Vector in Partition
RHybridFinder Identification of Hybrid Peptides in
Immunopeptidomic Analyses
RI2by2 Randomization Inference for Treatment Effects
on a Binary Outcome
RIA Radiomics Image Analysis Toolbox for Medial
Images
RIFS Random Iterated Function System
RISCA Causal Inference and Prediction in Cohort-Based
Analyses
RISmed Download Content from NCBI Databases
RITCH Parser for the ITCH Protocol
RIbench Benchmark Suite for Indirect Methods for RI
Estimation
RIdeogram Drawing SVG Graphics to Visualize and Map
Genome-Wide Data on Idiograms
RImageJROI Read and Write 'ImageJ' Region of Interest
(ROI) Files
RImagePalette Extract the Colors from Images
RImpact Calculates Measures of Scholarly Impact
RInSp R Individual Specialization
RInside C++ Classes to Embed R in C++ (and C)
Applications
RItools Randomization Inference Tools
RJDBC Provides Access to Databases Through the JDBC
Interface
RJDemetra Interface to 'JDemetra+' Seasonal Adjustment
Software
RJSDMX R Interface to SDMX Web Services
RJSONIO Serialize R Objects to JSON
RJSplot Interactive Graphs with R
RJafroc Artificial Intelligence Systems and Observer
Performance
RJalaliDate Handling Jalali Date (Persian / Solar Hijri)
RKEA R/KEA Interface
RKEAjars R/KEA Interface Jars
RKEELdata Datasets from 'KEEL' for it Use in 'RKEEL'
RKUM Robust Kernel Unsupervised Methods
RKaggle 'Kaggle' Dataset Downloader 'API'
RKelly Translate Odds and Probabilities
RKorAPClient 'KorAP' Web Service Client Package
RLRsim Exact (Restricted) Likelihood Ratio Tests for
Mixed and Additive Models
RLT Reinforcement Learning Trees
RLeafAngle Estimates, Plots and Evaluates Leaf Angle
Distribution Functions, Calculates Extinction
Coefficients
RLescalation Optimal Dose Escalation Using Deep
Reinforcement Learning
RLogicalOps Process Logical Operations
RLoptimal Optimal Adaptive Allocation Using Deep
Reinforcement Learning
RLumCarlo Monte-Carlo Methods for Simulating Luminescence
Phenomena
RLumModel Solving Ordinary Differential Equations to
Understand Luminescence
RLumShiny 'Shiny' Applications for the R Package
'Luminescence'
RM.weights Weighted Rasch Modeling and Extensions using
Conditional Maximum Likelihood
RM2006 RiskMetrics 2006 Methodology
RMAT Random Matrix Analysis Toolkit
RMAWGEN Multi-Site Auto-Regressive Weather GENerator
RMCC Airborne LiDAR Filtering Method Based on
Multiscale Curvature
RMCDA Multi-Criteria Decision Analysis
RMCLab Lab for Matrix Completion and Imputation of
Discrete Rating Data
RMFM Robust Matrix Factor Model
RMKdiscrete Sundry Discrete Probability Distributions
RMLPCA Maximum Likelihood Principal Component Analysis
RMM Revenue Management Modeling
RMOA Connect R with MOA for Massive Online Analysis
RMOAjars External jars Required for Package RMOA
RMOPI Risk Management and Optimization for Portfolio
Investment
RMSD Refined Modified Stahel-Donoho Estimators for
Outlier Detection
RMSDp Refined Modified Stahel-Donoho (MSD) Estimators
for Outlier Detection (Parallel Version)
RMSNumpress 'Rcpp' Bindings to Native C++ Implementation of
MS Numpress
RMSS Robust Multi-Model Subset Selection
RMSTpowerBoost Power and Sample Size for Restricted Mean
Survival Time Based Clinical Trials
RMT4DS Computation of Random Matrix Models
RMTL Regularized Multi-Task Learning
RMThreshold Signal-Noise Separation in Random Matrices by
using Eigenvalue Spectrum Analysis
RMTstat Distributions, Statistics and Tests Derived
from Random Matrix Theory
RMVL Mappable Vector Library for Handling Large
Datasets
RMX Rasch Models -- eXtensions
RMaCzek Czekanowski's Diagrams
RMallow Fit Multi-Modal Mallows' Models to Ranking Data
RMariaDB Database Interface and MariaDB Driver
RMark R Code for Mark Analysis
RMeDPower2 Design and Modeling for Repeated Measures
Studies
RMediation Mediation Analysis Confidence Intervals
RMixpanel API for Mixpanel
RMixtComp Mixture Models with Heterogeneous and
(Partially) Missing Data
RMixtCompIO Minimal Interface of the C++ 'MixtComp' Library
for Mixture Models with Heterogeneous and
(Partially) Missing Data
RMixtCompUtilities Utility Functions for 'MixtComp' Outputs
RMySQL Database Interface and 'MySQL' Driver for R
RNASeqPower Sample size for RNAseq studies
RNAmf Recursive Non-Additive Emulator for
Multi-Fidelity Data
RNAseqNet Log-Linear Poisson Graphical Model with
Hot-Deck Multiple Imputation
RNAseqQC Quality Control for RNA-Seq Data
RNCEP Obtain, Organize, and Visualize NCEP Weather
Data
RND Risk Neutral Density Extraction Package
RNGforGPD Random Number Generation for Generalized
Poisson Distribution
RNOmni Rank Normal Transformation Omnibus Test
RNeXML Semantically Rich I/O for the 'NeXML' Format
RNentropy Entropy Based Method for the Detection of
Significant Variation in Gene Expression Data
RNetCDF Interface to 'NetCDF' Datasets
RNetLogo Provides an Interface to the Agent-Based
Modelling Platform 'NetLogo'
RNewsflow Tools for Comparing Text Messages Across Time
and Media
RNifti Fast R and C++ Access to NIfTI Images
RNiftyReg Image Registration Using the 'NiftyReg' Library
ROAuth R Interface For OAuth
ROBOSRMSMOTE Robust Oversampling with RM-SMOTE for
Imbalanced Classification
ROCFTP.MMS Perfect Sampling
ROCModels ROC Models and AUC Estimation
ROCR Visualizing the Performance of Scoring
Classifiers
ROCS Receiver Operating Characteristics Surface
ROCSI Receiver Operating Characteristic Based
Signature Identification
ROCaggregator Aggregate Multiple ROC Curves into One Global
ROC
ROCit Performance Assessment of Binary Classifier
with Visualization
ROCket Simple and Fast ROC Curves
ROCnGO Fast Analysis of ROC Curves
ROCnReg ROC Curve Inference with and without Covariates
ROCpsych Compute and Compare Diagnostic Test Statistics
Across Groups
ROCsurvcomp ROC-Based Methods for Comparing Survival
Distributions with Right, Left, and Doubly
Censored Data
RODBC ODBC Database Access
RODBCDBI Provides Access to Databases Through the ODBC
Interface
ROI R Optimization Infrastructure
ROI.format.cbf Conic Benchmark Format (CBF) Plugin for the R
Optimization Infrastructure
ROI.models.globalOptTests
'ROI' Optimization Problems Based on
'globalOptTests'
ROI.models.miplib 'ROI' Access to 'MIPLIB' 2010 Benchmark
Instances
ROI.models.netlib 'ROI' Optimization Problems Based on
'NETLIB-LP'
ROI.plugin.alabama 'alabama' Plug-in for the 'R' Optimization
Infrastructure
ROI.plugin.clarabel 'clarabel' Plug-in for the 'R' Optimization
Infrastructure
ROI.plugin.deoptim 'DEoptim' and 'DEoptimR' Plugin for the 'R'
Optimization Interface
ROI.plugin.ecos 'ECOS' Plugin for the 'R' Optimization
Infrastructure
ROI.plugin.glpk 'ROI' Plug-in 'GLPK'
ROI.plugin.highs 'HiGHS' Plugin for the 'R' Optimization
Infrastructure
ROI.plugin.ipop 'ipop' Plug-in for the 'R' Optimization
Interface
ROI.plugin.lpsolve 'lp_solve' Plugin for the 'R' Optimization
Infrastructure
ROI.plugin.msbinlp 'Multi-Solution' Binary Linear Problem Plug-in
for the 'R' Optimization Interface
ROI.plugin.neos 'NEOS' Plug-in for the 'R' Optimization
Interface
ROI.plugin.nloptr 'nloptr' Plug-in for the 'R' Optimization
Infrastructure
ROI.plugin.optimx 'optimx' Plug-in for the 'R' Optimization
Infrastructure
ROI.plugin.osqp 'osqp' Plugin for the 'R' Optimization
Infrastructure
ROI.plugin.qpoases 'qpOASES' Plugin for the 'R' Optimization
Infrastructure
ROI.plugin.quadprog 'quadprog' Plug-in for the 'R' Optimization
Infrastructure
ROI.plugin.scs 'SCS' Plug-in for the 'R' Optimization
Infrastructure
ROI.plugin.symphony 'SYMPHONY' Plug-in for the 'R' Optimization
Interface
ROKET Optimal Transport-Based Kernel Regression
ROMDB Get 'OMDB' API Multiple Information
ROOPSD R Object Oriented Programming for Statistical
Distribution
ROOT Rashomon Set of Optimal Trees
ROSE Random Over-Sampling Examples
ROTS Reproducibility-Optimized Test Statistic
ROlogit Fit Rank-Ordered Logit (RO-Logit) Model
ROntoTools R Onto-Tools suite
ROpenCVLite Helper Package for Installing 'OpenCV'
ROpenDota Access OpenDota Services in R
ROpenFIGI R Interface to OpenFIGI
ROpenWeatherMap R Interface to OpenWeatherMap API
ROptEst Optimally Robust Estimation
ROptSpace Matrix Reconstruction from a Few Entries
ROptimus A Parallel General-Purpose Adaptive
Optimisation Engine
RPDTest A New Type of Test Statistic and Method for
Multinomial Goodness-of-Fit Test
RPEGLMEN Gamma and Exponential Generalized Linear Models
with Elastic Net Penalty
RPEIF Computation and Plots of Influence Functions
for Risk and Performance Measures
RPESE Estimates of Standard Errors for Risk and
Performance Measures
RPEXE.RPEXT Reduced Piecewise Exponential Estimate/Test
Software
RPEnsemble Random Projection Ensemble Classification
RPIV Residual Prediction Tests for
Well-Specification of Instrumental Variable
Models
RPMG Graphical User Interface (GUI) for Interactive
R Analysis Sessions
RPMM Recursively Partitioned Mixture Model
RPPASPACE Reverse-Phase Protein Array Super Position and
Concentration Evaluation
RPPanalyzer Reads, Annotates, and Normalizes Reverse Phase
Protein Array Data
RPatternJoin String Similarity Joins for Hamming and
Levenshtein Distances
RPesto Phylogenetic Estimation of Shifts in the Tempo
of Origination
RPhosFate Soil and Chemical Substance Emission and
Transport Model
RPointCloud Visualizing Topological Loops and Voids
RPostgreSQL R Interface to the 'PostgreSQL' Database System
RPostgres C++ Interface to PostgreSQL
RPregression A Simple Regression and Plotting Tool
RPresto DBI Connector to Presto
RProbSup Calculates Probability of Superiority
RProtoBuf R Interface to the 'Protocol Buffers' 'API'
(Version 2 or 3)
RProtoBufLib C++ headers and static libraries of Protocol
buffers
RPscoring Relative Placement Algorithm
RPtests Goodness of Fit Tests for High-Dimensional
Linear Regression Models
RPublica ProPublica API Client
RPushbullet R Interface to the Pushbullet Messaging Service
RPyGeo ArcGIS Geoprocessing via Python
RQEntangle Quantum Entanglement of Bipartite System
RQdeltaCT Relative Quantification of Gene Expression
using Delta Ct Methods
RQuantLib R Interface to the 'QuantLib' Library
RRBoost A Robust Boosting Algorithm
RRF Regularized Random Forest
RRI Residual Randomization Inference for Regression
Models
RRMLRfMC Reduced-Rank Multinomial Logistic Regression
for Markov Chains
RRNA Secondary Structure Plotting for RNA
RRPP Linear Model Evaluation with Randomized
Residuals in a Permutation Procedure
RRRR Online Robust Reduced-Rank Regression
Estimation
RRTCS Randomized Response Techniques for Complex
Surveys
RRgeo Species Distribution Modelling for Rare Species
RRmorph 3D Morphological Analyses with 'RRphylo'
RRphylo Phylogenetic Ridge Regression Methods for
Comparative Studies
RRreg Correlation and Regression Analyses for
Randomized Response Data
RSA Response Surface Analysis
RSADBE Data related to the book "R Statistical
Application Development by Example"
RSAGA SAGA Geoprocessing and Terrain Analysis
RSAtools Advanced Response Surface Analysis
RSBJson Handle R Requests from R Service Bus
Applications with JSON Payloads
RSC Robust and Sparse Correlation Matrix
RSCAT Shadow-Test Approach to Computerized Adaptive
Testing
RSD Compares Random Distributions using Stochastic
Dominance
RSDA R to Symbolic Data Analysis
RSDC Regime-Switching Dynamic Correlation Models
RSDK Sudoku with R
RSE Number of Newly Discovered Rare Species
Estimation
RSEIS Seismic Time Series Analysis Tools
RSKC Robust Sparse K-Means
RSNNS Neural Networks using the Stuttgart Neural
Network Simulator (SNNS)
RSP 'shiny' Applications for Statistical and
Psychometric Analysis
RSQL Database Agnostic Package to Generate and
Process 'SQL' Queries in R
RSQLite SQLite Interface for R
RSQLite.toolkit Load Data in SQLite from Tabular Files
RSSL Implementations of Semi-Supervised Learning
Approaches for Classification
RSSOP Simulation of Supply Reservoir Systems using
Standard Operation Policy
RSSRMR Robust Self-Representation Sparse
Reconstruction and Manifold Regularization
RSSampling Ranked Set Sampling
RSStest Testing the Equality of Two Means Using RSS and
MRSS
RSSthemes RSS Palettes and Themes
RSTr Gibbs Samplers for Discrete Bayesian
Spatiotemporal Models
RScelestial Scelestial: Steiner Tree Based Single-Cell
Lineage Tree Inference
RSclient Client for Rserve
RSelenium R Bindings for 'Selenium WebDriver'
RSentiment Analyse Sentiment of English Sentences
RSiena Siena - Simulation Investigation for Empirical
Network Analysis
RSizeBiased Hypothesis Testing Based on R-Size Biased
Samples
RSmallTelescopes Empirical Small Telescopes Analysis
RSmartlyIO Loading Facebook and Instagram Advertising Data
from 'Smartly.io'
RSpectra Solvers for Large-Scale Eigenvalue and SVD
Problems
RSpincalc Conversion Between Attitude Representations of
DCM, Euler Angles, Quaternions, and Euler
Vectors
RSqlParser Parse 'SQL' Statements
RSquaredMI R-Squared with Multiply Imputed Data
RStanTVA TVA Models in 'Stan' using 'R' and 'StanTVA'
RStata A Bit of Glue Between R and Stata
RStoolbox Remote Sensing Data Analysis
RTCC Detecting Trait Clustering in Environmental
Gradients
RTD Simple TD API Client
RTDE Robust Tail Dependence Estimation
RTFA Robust Factor Analysis for Tensor Time Series
RTL Risk Tool Library - Trading, Risk, Analytics
for Commodities
RTLknitr Right to Left Dynamic Documents Using 'knitr'
RTMB 'R' Bindings for 'TMB'
RTMBdist Distributions Compatible with Automatic
Differentiation by 'RTMB'
RTSA 'Trial Sequential Analysis' for Error Control
and Inference in Sequential Meta-Analyses
RTaxometrics Taxometric Analysis
RTextTools Automatic Text Classification via Supervised
Learning
RTransferEntropy Measuring Information Flow Between Time Series
with Shannon and Renyi Transfer Entropy
RTriangle Triangle - A 2D Quality Mesh Generator and
Delaunay Triangulator
RUnit R Unit Test Framework
RVAideMemoire Testing and Plotting Procedures for
Biostatistics
RVCompare Compare Real Valued Random Variables
RVIpkg Regional Vulnerability Index
RVerbalExpressions Create Regular Expressions Easily
RViennaCL 'ViennaCL' C++ Header Files
RWDataPlyr Read and Manipulate Data from 'RiverWare'
RWNN Random Weight Neural Networks
RWeka R/Weka Interface
RWekajars R/Weka Interface Jars
RWgraph Random Walks on Graphs Representing a
Transactional Network
RWiener Wiener Process Distribution Functions
RWildbook Interface for the 'Wildbook' Wildlife Data
Management Framework
RWsearch Lazy Search in R Packages, Task Views, CRAN,
the Web. All-in-One Download
RXKCD Get XKCD Comic from R
RYandexTranslate R Interface to Yandex Translate API
RZigZag Zig-Zag Sampler
RZooRoH Partitioning of Individual Autozygosity into
Multiple Homozygous-by-Descent Classes
RaCE.NMA Rank-Clustered Estimation for Network
Meta-Analysis
RaJIVE Robust Angle Based Joint and Individual
Variation Explained
RaMS R Access to Mass-Spec Data
RaSEn Random Subspace Ensemble Classification and
Variable Screening
RaceID Identification of Cell Types, Inference of
Lineage Trees, and Prediction of Noise Dynamics
from Single-Cell RNA-Seq Data
Racmacs Antigenic Cartography Macros
RadData Nuclear Decay Data for Dosimetric Calculations
- ICRP 107
RadEro Cs-137 Conversion Model
RadOnc Analytical Tools for Radiation Oncology
RadialVisGadgets Interactive Gadgets for Radial Visualization
Approaches
RadioSonde Tools for Plotting Skew-T Diagrams and Wind
Profiles
Radviz Project Multidimensional Data in 2D Space
RagGrid A Wrapper of the 'JavaScript' Library 'agGrid'
Rage Life History Metrics from Matrix Population
Models
RaggedExperiment Representation of Sparse Experiments and Assays
Across Samples
RainfallErosivityFactor
The Rainfall-Runoff Erosivity Factor
Ramble Parser Combinator for R
RandMeta Efficient Numerical Algorithm for Exact
Inference in Meta Analysis
RandPro Random Projection with Classification
RandVar Implementation of Random Variables
RandomForestsGLS Random Forests for Dependent Data
RandomGaussianNB Randomized Feature and Bootstrap-Enhanced
Gaussian Naive Bayes Classifier
RandomProjectionTest Two-Sample Test in High Dimensions using Random
Projection
RandomWalker Generate Random Walks Compatible with the
'tidyverse'
Randomuseragent Filtering and Randomly Sampling Real User-Agent
Strings
RanglaPunjab Displays Palette of 5 Colors
RankAggSIgFUR Polynomially Bounded Rank Aggregation under
Kemeny's Axiomatic Approach
RankAggreg Weighted Rank Aggregation
RankPCA Rank of Variables Based on Principal Component
Analysis for Mixed Data Types
RankResponse Ranking Responses in a Single Response Question
or a Multiple Response Question
Rankcluster Model-Based Clustering for Multivariate Partial
Ranking Data
RankingProject The Ranking Project: Visualizations for
Comparing Populations
Rapi Interface for Multiple Data Providers 'EDDS'
and 'FRED'
RapidFuzz String Similarity Computation Using 'RapidFuzz'
RapidPolygonLookup POLYGON LOOKUP USING KD TREES
RapidoPGS A Fast and Light Package to Compute Polygenic
Risk Scores
Rapp Easily Build Command Line Applications
RareComb Combinatorial and Statistical Analyses of Rare
Events
Rarity Calculation of Rarity Indices for Species and
Assemblages of Species
RaschSampler Rasch Sampler
RastaRocket Rocket-Fast Clinical Research Reporting
RatingScaleReduction Rating Scale Reduction Procedure
RationalExp Rationalizing Rational Expectations. Tests and
Deviations
Rato Resilience Analysis Toolkit (RATO)
Ravages Rare Variant Analysis and Genetic Simulations
RavenR Raven Hydrological Modelling Framework R
Support and Analysis
RawHummus Raw Data Quality Control Tool for LC-MS System
Rbearcat University of Cincinnati Themes and Utilities
for Econometrics and Data Science
Rbeast Bayesian Change-Point Detection and Time Series
Decomposition
Rbent Robust Bent Line Regression
RblDataLicense R Interface to 'Bloomberg Data License'
Rblpapi R Interface to 'Bloomberg'
Rborist Extensible, Parallelizable Implementation of
the Random Forest Algorithm
RbyExample Data for the Book "R by Example"
RcamelsCL Easy Handling of the CAMELS-CL Dataset
Rcan Cancer Registry Data Analysis and Visualisation
Rcapture Loglinear Models for Capture-Recapture
Experiments
Rcatch22 Calculation of 22 CAnonical Time-Series
CHaracteristics
RcausalEGM A General Causal Inference Framework by
Encoding Generative Modeling
Rcereal "Cereal Headers for R and C++ Serialization"
RchivalTag Analyzing and Interactive Visualization of
Archival Tagging Data
Rchoice Discrete Choice (Binary, Poisson and Ordered)
Models with Random Parameters
Rcmdr R Commander
RcmdrMisc R Commander Miscellaneous Functions
RcmdrPlugin.BWS1 R Commander Plug-in for Case 1 Best-Worst
Scaling
RcmdrPlugin.BWS2 R Commander Plug-in for Case 2 Best-Worst
Scaling
RcmdrPlugin.BWS3 R Commander Plug-in for Case 3 Best-Worst
Scaling
RcmdrPlugin.DCCV R Commander Plug-in for Dichotomous Choice
Contingent Valuation
RcmdrPlugin.DCE R Commander Plug-in for Discrete Choice
Experiments
RcmdrPlugin.DoE R Commander Plugin for (Industrial) Design of
Experiments
RcmdrPlugin.EBM Rcmdr Evidence Based Medicine Plug-in Package
RcmdrPlugin.EZR R Commander Plug-in for the EZR (Easy R)
Package
RcmdrPlugin.Export Export R Output to LaTeX or HTML
RcmdrPlugin.FactoMineR
Graphical User Interface for FactoMineR
RcmdrPlugin.HH Rcmdr Support for the HH Package
RcmdrPlugin.KMggplot2 R Commander Plug-in for Data Visualization with
'ggplot2'
RcmdrPlugin.MPAStats R Commander Plug-in for MPA Statistics
RcmdrPlugin.NMBU R Commander Plug-in for University Level
Applied Statistics
RcmdrPlugin.PcaRobust R Commander Plug-in for Robust Principal
Component Analysis
RcmdrPlugin.RMTCJags R MTC Jags 'Rcmdr' Plugin
RcmdrPlugin.ROC Rcmdr Receiver Operator Characteristic Plug-in
Package
RcmdrPlugin.RiskDemo R Commander Plug-in for Risk Demonstration
RcmdrPlugin.TeachStat R Commander Plugin for Teaching Statistical
Methods
RcmdrPlugin.TeachingDemos
Rcmdr Teaching Demos Plug-in
RcmdrPlugin.UCA UCA Rcmdr Plug-in
RcmdrPlugin.WorldFlora
R Commander Plug-in for the 'WorldFlora'
Package
RcmdrPlugin.aRnova R Commander Plug-in for Repeated-Measures ANOVA
RcmdrPlugin.depthTools
R Commander Depth Tools Plug-in
RcmdrPlugin.orloca A GUI for Planar Location Problems
RcmdrPlugin.sos Efficiently search the R help pages
RcmdrPlugin.survival R Commander Plug-in for the 'survival' Package
RcmdrPlugin.temis Graphical Integrated Text Mining Solution
Rcompadre Utilities for using the 'COM(P)ADRE' Matrix
Model Database
Rcope Tools to Cope with Endogeneity Problems
Rcpp Seamless R and C++ Integration
RcppAPT 'Rcpp' Interface to the APT Package Manager
RcppAlgos High Performance Tools for Combinatorics and
Computational Mathematics
RcppAnnoy 'Rcpp' Bindings for 'Annoy', a Library for
Approximate Nearest Neighbors
RcppArmadillo 'Rcpp' Integration for the 'Armadillo'
Templated Linear Algebra Library
RcppArray 'Rcpp' Meets 'C++' Arrays
RcppBDT 'Rcpp' Bindings for the Boost Date_Time Library
RcppBessel Bessel Functions Rcpp Interface
RcppBigIntAlgos Factor Big Integers with the Parallel Quadratic
Sieve
RcppBlaze 'Rcpp' Integration for the 'Blaze'
High-Performance 'C++' Math Library
RcppCCTZ 'Rcpp' Bindings for the 'CCTZ' Library
RcppCGAL 'Rcpp' Integration for 'CGAL'
RcppCNPy Read-Write Support for 'NumPy' Files via 'Rcpp'
RcppCWB 'Rcpp' Bindings for the 'Corpus Workbench'
('CWB')
RcppCensSpatial Spatial Estimation and Prediction for
Censored/Missing Responses
RcppClassic Deprecated 'classic' 'Rcpp' 'API'
RcppClassicExamples Examples using 'RcppClassic' to Interface R and
C++
RcppColMetric Efficient Column-Wise Metric Computation
Against Common Vector
RcppColors Color Mappings and 'C++' Header Files for Color
Conversion
RcppDE Global Optimization by Differential Evolution
in C++
RcppDPR 'Rcpp' Implementation of Dirichlet Process
Regression
RcppDate 'date' C++ Header Library for Date and Time
Functionality
RcppDist 'Rcpp' Integration of Additional Probability
Distributions
RcppDynProg 'Rcpp' Dynamic Programming
RcppEigen 'Rcpp' Integration for the 'Eigen' Templated
Linear Algebra Library
RcppEigenAD Generate Partial Derivatives using 'Rcpp',
'Eigen' and 'CppAD'
RcppEnsmallen Header-Only C++ Mathematical Optimization
Library for 'Armadillo'
RcppExamples Examples using 'Rcpp' to Interface R and C++
RcppFarmHash Interface to the Google 'FarmHash' Family of
Hash Functions
RcppFastAD 'Rcpp' Bindings to 'FastAD'
Auto-Differentiation
RcppFastFloat 'Rcpp' Bindings for the 'fast_float'
Header-Only Library for Number Parsing
RcppGSL 'Rcpp' Integration for 'GNU GSL' Vectors and
Matrices
RcppGetconf 'Rcpp' Interface for Querying System
Configuration Variables
RcppGreedySetCover Greedy Set Cover
RcppHMM Rcpp Hidden Markov Model
RcppHNSW 'Rcpp' Bindings for 'hnswlib', a Library for
Approximate Nearest Neighbors
RcppHungarian Solves Minimum Cost Bipartite Matching Problems
RcppInt64 'Rcpp'-Based Helper Functions to Pass 'Int64'
and 'nanotime' Values Between 'R' and 'C++'
RcppJagger An R Wrapper for Jagger
RcppML Rcpp Machine Learning Library
RcppMagicEnum 'Rcpp' Bindings to 'Magic Enum' 'C++' 'Enum'
Support
RcppMeCab 'rcpp' Wrapper for 'mecab' Library
RcppMsgPack 'MsgPack' C++ Header Files and Interface
Functions for R
RcppNLoptExample 'Rcpp' Package Illustrating Header-Only Access
to 'NLopt'
RcppNumerical 'Rcpp' Integration for Numerical Computing
Libraries
RcppParallel Parallel Programming Tools for 'Rcpp'
RcppPlanc Parallel Low-Rank Approximation with
Nonnegativity Constraints
RcppProgress An Interruptible Progress Bar with OpenMP
Support for C++ in R Packages
RcppQuantuccia R Bindings to the Calendaring Functionality of
'QuantLib'
RcppRedis 'Rcpp' Bindings for 'Redis' using the 'hiredis'
Library
RcppRoll Efficient Rolling / Windowed Operations
RcppSMC Rcpp Bindings for Sequential Monte Carlo
RcppSimdJson 'Rcpp' Bindings for the 'simdjson' Header-Only
Library for 'JSON' Parsing
RcppSpdlog R and C++ Interfaces to 'spdlog' C++ Header
Library for Logging
RcppTN Rcpp-Based Truncated Normal Distribution RNG
and Family
RcppTOML 'Rcpp' Bindings to Parser for "Tom's Obvious
Markup Language"
RcppThread R-Friendly Threading in C++
RcppTskit 'R' Access to the 'tskit C' API
RcppUUID Generating Universally Unique Identificators
RcppXPtrUtils XPtr Add-Ons for 'Rcpp'
RcppXsimd Xsimd C++ Header-Only Library Files
RcppXts Interface the 'xts' API via 'Rcpp'
RcppZiggurat 'Rcpp' Integration of Different "Ziggurat"
Normal RNG Implementations
Rcriticor Pierre-Goldwin Correlogram
Rcsdp R Interface to the CSDP Semidefinite
Programming Library
Rcssplot Styling of Graphics using Cascading Style
Sheets
Rcurvep Concentration-Response Data Analysis using
Curvep
Rd2md Markdown Reference Manuals
Rd2roxygen Convert Rd to 'Roxygen' Documentation
Rdatasets Access Datasets from the Rdatasets Archive
Rdice A Collection of Functions to Experiment Dice
Rolls
Rdimtools Dimension Reduction and Estimation Methods
Rdisop Decomposition of Isotopic Patterns
Rdistance Density and Abundance from Distance-Sampling
Surveys
Rdpack Update and Manipulate Rd Documentation Objects
Rdrw Univariate and Multivariate Damped Random Walk
Processes
Rdsdp R Interface to DSDP Semidefinite Programming
Library
Rdta Data Transforming Augmentation for Linear Mixed
Models
Rduckhts 'DuckDB' High Throughput Sequencing File
Formats Reader Extension
Rduino A Microcontroller Interface
Rduinoiot 'Arduino Iot Cloud API' R Client
Rdune 'Creates Color Palettes Inspired by Dune'
ReAD Powerful Replicability Analysis of Genome-Wide
Association Studies
ReDaMoR Relational Data Modeler
ReDirection Predict Dominant Direction of Reactions of a
Biochemical Network
ReIns Functions from "Reinsurance: Actuarial and
Statistical Aspects"
ReMFPCA Regularized Multivariate Functional Principal
Component Analysis
ReSurv Machine Learning Models for Predicting Claim
Counts
ReVAMP Interface to 'Vamp' Audio Analysis Plugins
ReacTran Reactive Transport Modelling in 1d, 2d and 3d
Reacnorm Perform a Partition of Variance of Reaction
Norms
ReadDIM Read ESA SNAP Processed Raster Format in R
RealSurvSim Simulate Survival Data
RealVAMS Multivariate VAM Fitting
Rearrangement Monotonize Point and Interval Functional
Estimates by Rearrangement
RecAssoRules Recursive Mining for Frequent Pattern and
Confident Association Rules
Recocrop Estimating Environmental Suitability for Plants
Recon Computational Tools for Economics
RecordLinkage Record Linkage Functions for Linking and
Deduplicating Data Sets
RecordTest Inference Tools in Time Series Based on Record
Statistics
Records Record Values and Record Times
RedditExtractoR Reddit Data Extraction Toolkit
RedeAgroRadar Weather Radar Monitoring and 'Telegram' Alerts
for Agriculture Research
RedeR Interactive visualization and manipulation of
nested networks
RedisBaseContainer The Container for the DockerParallel Package
Rediscover Identify Mutually Exclusive Mutations
RefBasedMI Reference-Based Imputation for Longitudinal
Clinical Trials with Protocol Deviation
RefManageR Straightforward 'BibTeX' and 'BibLaTeX'
Bibliography Management
RegAssure Streamlined Integration of Regression
Assumption
RegCalReliab Regression Calibration Using Reliability
Studies
RegCombin Partially Linear Regression under Data
Combination
RegDDM Generalized Linear Regression with DDM
RegEnRF Regression-Enhanced Random Forests
RegKink Regression Kink with a Time-Varying Threshold
RegSDC Information Preserving Regression-Based Tools
for Statistical Disclosure Control
RegimeChange Comprehensive Regime Change Detection in Time
Series
RegionalConsistency Calculate Regional Consistency Probabilities
for Multi-Regional Clinical Trials
RegrCoeffsExplorer Efficient Visualization of Regression
Coefficients for Lm(), Glm(), and Glmnet()
Objects
RegressionFactory Expander Functions for Generating Full Gradient
and Hessian from Single-Slot and Multi-Slot
Base Distributions
ReinforcementLearning Model-Free Reinforcement Learning
RelDists Estimation for some Reliability Distributions
RelativeDistClust Clustering with a Novel Non Euclidean Relative
Distance
Relectoral Electoral Analysis
ReliaGrowR Reliability Growth Analysis and Repairable
Systems Modeling
ReliaLearnR Learning Modules for Reliability Analysis
ReliaPlotR Interactive Reliability Probability Plots
ReliaShiny A 'Shiny' App for Reliability Analysis
ReliabilityTheory Structural Reliability Analysis
RelimpPCR Relative Importance PCA Regression
Renext Renewal Method for Extreme Values Extrapolation
RenvModule Interface to Allow Full Use of the Environment
Modules System for Unix
Renvlp Computing Envelope Estimators
RenyiExtropy Entropy and Extropy Measures for Probability
Distributions
RepaymentPlan Calculation of Mortgage Plan or Repayment Plan
RepeatABEL GWAS for Multiple Observations on Related
Individuals
RepeatedHighDim Methods for High-Dimensional Repeated Measures
Data
Replicate Statistical Metrics for Multisite Replication
Studies
ReplicationSuccess Design and Analysis of Replication Studies
Repliscope Replication Timing Profiling using DNA Copy
Number
RepoGenerator Generates a Project and Repo for Easy
Initialization of a Workshop
ReportSubtotal Adds Subtotals to Data Reports
ReporterScore Generalized Reporter Score-Based Enrichment
Analysis for Omics Data
ReproStat Reproducibility Diagnostics for Statistical
Modeling
Require Installing and Loading R Packages for
Reproducible Workflows
ResIN Conduct Response Item Network (ResIN) Analysis
with Social Response Data
ResIndex Generate Simple yet Effective Metric of Feature
Importance for Classification Problems
ResPBIBD "Resolvable Partially Balanced Incomplete Block
Designs (PBIBDs)"
ResidentialEnergyConsumption
Residential Energy Consumption Data
ResidualMatrix Creating a DelayedMatrix of Regression
Residuals
ResistorArray Electrical Properties of Resistor Networks
ResourceSelection Resource Selection (Probability) Functions for
Use-Availability Data
RespirAnalyzer Analysis Functions of Respiratory Data
RestRserve A Framework for Building HTTP API
RestoreNet Random-Effects Stochastic Reaction Networks
ResultModelManager Result Model Manager
RevGadgets Visualization and Post-Processing of 'RevBayes'
Analyses
RevSD Visualizing the Standard Deviation via
Revolution
ReviewR A Light-Weight, Portable Tool for Reviewing
Individual Patient Records
Revticulate Interaction with "RevBayes" in R
RfEmpImp Multiple Imputation using Chained Random
Forests
Rfacebook Access to Facebook API via R
Rfast A Collection of Efficient and Extremely Fast R
Functions
Rfast2 A Collection of Efficient and Extremely Fast R
Functions II
Rfit Rank-Based Estimation for Linear Models
Rfmtool Fuzzy Measure Tools
Rfolding The Folding Test of Unimodality
Rforestry Random Forests, Linear Trees, and Gradient
Boosting for Inference and Interpretability
Rfractran A 'FRACTRAN' Interpreter and Some Helper
Functions
Rfuzzycoco Provides an R Interface to the 'FuzzyCoCo' C++
Library and Extends It
Rgbp Hierarchical Modeling and Frequency Method
Checking on Overdispersed Gaussian, Poisson,
and Binomial Data
Rgff R Utilities for GFF Files
Rglottography Programmatic Access to Glottography Speaker
Area Polygons
Rglpk R/GNU Linear Programming Kit Interface
Rgof 1d Goodness of Fit Tests
RgoogleMaps Overlays on Static Maps
Rgraphviz Provides plotting capabilities for R graph
objects
Rhdf5lib hdf5 library as an R package
RhpcBLASctl Control the Number of Threads on 'BLAS'
Rhtslib HTSlib high-throughput sequencing library as an
R package
Ricrt Randomization Inference of Clustered Randomized
Trials
RiemBase Functions and C++ Header Files for Computation
on Manifolds
Riemann Learning with Data on Riemannian Manifolds
Riex IEX Stocks and Market Data
Rigma Access to the 'Figma' API
Rigraphlib igraph library as an R package
Rilostat Access and Manipulation of ILOSTAT Labour
Statistics
Rirt Data Analysis and Parameter Estimation Using
Item Response Theory
Risk Computes 26 Financial Risk Measures for Any
Continuous Distribution
RiskMap Geostatistical Modeling of Spatially Referenced
Data
RiskPortfolios Computation of Risk-Based Portfolios
RiskScorescvd Cardiovascular Risk Scores Calculator
RiskyCNV Risk Analysis of Genomic Copy Number Variation
Rita Automated Transformations, Normality Testing,
and Reporting
Ritc Isothermal Titration Calorimetry (ITC) Data
Analysis
RivRetrieve Retrieve Global River Gauge Data
RiverBuilder River Generation for Given Data Sets
Rivivc In Vitro in Vivo Correlation Linear Level "A"
RkMetrics Hybrid Mortality Estimation
Rlab Functions and Datasets Required for ST370 Class
Rlabkey Data Exchange Between R and 'LabKey' Server
Rlibeemd Ensemble Empirical Mode Decomposition (EEMD)
and Its Complete Variant (CEEMDAN)
Rlibkdv A Versatile Kernel Density Visualization
Library for Geospatial Analytics (Heatmap)
Rlinkedin Access to the LinkedIn API via R
Rlinsolve Iterative Solvers for (Sparse) Linear System of
Equations
Rlof R Parallel Implementation of Local Outlier
Factor(LOF)
Rmalschains Continuous Optimization using Memetic
Algorithms with Local Search Chains
(MA-LS-Chains)
RmdConcord Concordances for 'R Markdown'
RmecabKo An 'Rcpp' Interface for Eunjeon Project
Rmfrac Simulation and Statistical Analysis of
Multifractional Processes
Rmisc Ryan Miscellaneous
Rmixmod Classification with Mixture Modelling
Rmodule Automated Markov Chain Monte Carlo for
Arbitrarily Structured Correlation Matrices
Rmoji Interactively Insert Emojis in 'R' Documents
Rmolt Graphic Visualization of the Birds' Molt
Rmonize Tools for Data Harmonization
Rmosek The R to MOSEK Optimization Interface
Rmpfr Interface R to MPFR - Multiple Precision
Floating-Point Reliable
Rmpi Interface (Wrapper) to MPI (Message-Passing
Interface)
Rnanoflann Extremely Fast Nearest Neighbor Search
Rnaught Estimate the Basic Reproduction Number (R0)
RnavGraphImageData Image Data Used in the Loon Package Demos
Rnest Next Eigenvalue Sufficiency Test
Rnightly A Wrapper of the 'JavaScript' Library 'Nightly'
Rnmr1D Perform the Complete Processing of a Set of
Proton Nuclear Magnetic Resonance Spectra
Rnumerai Interface to the Numerai Machine Learning
Tournament API
Rnvd3 An Incomplete Wrapper of the 'nvd3' JavaScript
Library
RoBMA Robust Bayesian Meta-Analyses
RoBSA Robust Bayesian Survival Analysis
RoME Multiple Checks on MEDITS Trawl Survey Data
RobAStBase Robust Asymptotic Statistics
RobAStRDA Interpolation Grids for Packages of the
'RobASt' - Family of Packages
RobExtremes Optimally Robust Estimation for Extreme Value
Distributions
RobGARCHBoot Robust Bootstrap Forecast Densities for GARCH
Models
RobKF Innovative and/or Additive Outlier Robust
Kalman Filtering
RobLox Optimally Robust Influence Curves and
Estimators for Location and Scale
RobMixReg Robust Mixture Regression
RobPC Robust Panel Clustering Algorithm
RobPer Robust Periodogram and Periodicity Detection
Methods
RobRegression Robust Multivariate Regression
RobStatTM Robust Statistics: Theory and Methods
RobinCID Robust Inference in Complex Innovative Trial
Design
RobinCar Robust Inference for Covariate Adjustment in
Randomized Clinical Trials
RobinCar2 ROBust INference for Covariate Adjustment in
Randomized Clinical Trials
RobinHood Interface for the RobinHood.com No Commission
Investing Platform
RobustAFT Truncated Maximum Likelihood Fit and Robust
Accelerated Failure Time Regression for
Gaussian and Log-Weibull Case
RobustANOVA Robust One-Way ANOVA Tests under
Heteroscedasticity and Nonnormality
RobustAdaptiveDecomposition
Decomposes a Univariate Time Series into
Subcomponents
RobustBF Robust Solution to the Behrens-Fisher Problem
RobustBayesianCopas Robust Bayesian Copas Selection Model
RobustCalibration Robust Calibration of Imperfect Mathematical
Models
RobustFlow Robustness and Drift Auditing for Longitudinal
Decision Systems
RobustGaSP Robust Gaussian Stochastic Process Emulation
RobustIV Robust Instrumental Variable Methods in Linear
Models
RobustLinearReg Robust Linear Regressions
RobustMediate Causal Mediation Analysis with Diagnostics and
Sensitivity Analysis
RobustMetrics Calculates Robust Performance Metrics for
Imbalanced Classification Problems
RobustPrediction Robust Tuning and Training for Cross-Source
Prediction
RobustRankAggreg Methods for Robust Rank Aggregation
Robyn Semi-Automated Marketing Mix Modeling (MMM)
from Meta Marketing Science
RockFab Rock Fabric and Strain Analysis Tools
Rogue Identify Rogue Taxa in Sets of Phylogenetic
Trees
RolWinMulCor Subroutines to Estimate Rolling Window Multiple
Correlation
RolWinWavCor Estimate Rolling Window Wavelet Correlation
Between Two Time Series
Romeb Robust Median-Based Bayesian Growth Curve
Modeling
Romney Classical Cultural Consensus Analysis
Rook HTTP Web Server for R
RootsExtremaInflections
Finds Roots, Extrema and Inflection Points of a
Curve
RootscanR Stitching and Analyzing Root Scans
Ropj Import Origin(R) Project Files
RoughSets Data Analysis Using Rough Set and Fuzzy Rough
Set Theories
RoundAndRound Plot Objects Moving in Orbits
Rpadrino Interact with the 'PADRINO' IPM Database
Rparadox Read Paradox Database Files into R
Rpdb Read, Write, Visualize and Manipulate PDB Files
Rphylopars Phylogenetic Comparative Tools for Missing Data
and Within-Species Variation
RplotterPkg R Plotting Functions Using 'ggplot2'
Rpoppler PDF Tools Based on Poppler
RprobitB Bayesian Probit Choice Modeling
Rprofet WOE Transformation and Scorecard Builder
Rquake Seismic Hypocenter Determination
Rquefts Quantitative Evaluation of the Native Fertility
of Tropical Soils
Rramas Matrix Population Models
Rraven Connecting R and 'Raven' Sound Analysis
Software
Rrdap RDAP Server Querying
Rrepest An Analyzer of International Large Scale
Assessments in Education
RsSimulx Extension of 'lixoftConnectors' for 'Simulx'
Rsagacmd Linking R with the Open-Source 'SAGA-GIS'
Software
Rsampling Ports the Workflow of "Resampling Stats" Add-in
to R
Rsamtools Binary alignment (BAM), FASTA, variant call
(BCF), and tabix file import
Rsearch Processing and Analyzing Amplicon Sequence Data
Rserve Versatile R Server
Rsfar Seasonal Functional Autoregressive Models
Rsgf SGF (Smart Game File) File Format Import
RsimdDispatch Runtime 'SIMD' Dispatch Templates for 'C' Code
in 'R' Packages
Rsmlx R Speaks 'Monolix'
Rsolnp General Non-Linear Optimization
Rsomoclu Somoclu
Rspc Nelson Rules for Control Charts
Rspotify Access to Spotify API
RsqMed Total Mediation Effect Size Measure for
High-Dimensional Mediators
Rssa A Collection of Methods for Singular Spectrum
Analysis
Rstg STG : Feature Selection using STochastic Gates
Rsubbotools Fast Estimation of Subbottin and AEP
Distributions (Generalized Error Distribution)
Rsubread Mapping, quantification and variant analysis of
sequencing data
Rsurrogate Robust Estimation of the Proportion of
Treatment Effect Explained by Surrogate Marker
Information
Rsymphony SYMPHONY in R
Rtauchen Discretization of AR(1) Processes
Rthingsboard 'ThingsBoard' API
Rtinycc Builds the 'TinyCC' Command-Line Interface and
Library for 'C' Scripting in 'R'
Rtnmin Truncated Newton Function Minimization with
Bounds Constraints
Rtrack Spatial Navigation Strategy Analysis
Rtropical Data Analysis Tools over Space of Phylogenetic
Trees Using Tropical Geometry
RtsEva Performs the Transformed-Stationary Extreme
Values Analysis
Rtsne T-Distributed Stochastic Neighbor Embedding
using a Barnes-Hut Implementation
Rttf2pt1 'ttf2pt1' Program
Rtumblr Collecting and Analyzing 'Tumblr' Data
Rtwalk An MCMC Sampler Using the t-Walk Algorithm
Rtwobitlib '2bit' 'C' Library
RuHere Flags Spatial Errors in Biological Collection
Data Using Specialists' Information
Ruido Soundscape Background Noise, Power, and
Saturation
RulesTools Preparing, Analyzing, and Visualizing
Association Rules
Runuran R Interface to the 'UNU.RAN' Random Variate
Generators
Rvcg Manipulations of Triangular Meshes Based on the
'VCGLIB' API
Rveg Digitization of Phytosociological Relevés
Rvoterdistance Voter Distance to Polling Locations
Rwave Time-Frequency Analysis of 1-D Signals
Rwbo Run the 'Open-WBO' MaxSAT Solver
RweaveExtra Sweave Drivers with Extra Tricks Up their
Sleeves
Rwhois WHOIS Server Querying
Rwofost WOFOST Crop Growth Simulation Model
RxnSim Functions to Compute Chemical and Chemical
Reaction Similarity
Ryacas R Interface to the 'Yacas' Computer Algebra
System
S3VS Structured Screen-and-Select Variable Selection
in Linear, Generalized Linear, and Survival
Models
S4Arrays Foundation of array-like containers in
Bioconductor
S4DM Small Sample Size Species Distribution Modeling
S4Vectors Foundation of vector-like and list-like
containers in Bioconductor
S7 An Object Oriented System Meant to Become a
Successor to S3 and S4
S7schema 'S7' Framework for Schema-Validated YAML
Configuration
SACCR SA Counterparty Credit Risk under CRR2
SADEG Stability Analysis in Differentially Expressed
Genes
SADISA Species Abundance Distributions with
Independent-Species Assumption
SAEval Small Area Estimation Evaluation
SAFARI Shape Analysis for AI-Reconstructed Images
SAFD Statistical Analysis of Fuzzy Data
SAFEMCN Network Topology Parameter Analysis with
Rarefaction
SAFEPG A Novel SAFE Model for Predicting
Climate-Related Extreme Losses
SAGM Spatial Autoregressive Graphical Model
SAGMM Clustering via Stochastic Approximation and
Gaussian Mixture Models
SAKERNAS A National Labor Force Survey of Indonesia
SALES The (Adaptive) Elastic Net and Lasso Penalized
Sparse Asymmetric Least Squares (SALES) and
Coupled Sparse Asymmetric Least Squares
(COSALES) using Coordinate Descent and Proximal
Gradient Algorithms
SALTSampler Efficient Sampling on the Simplex
SAM Sparse Additive Modelling
SAMBA Selection and Misclassification Bias Adjustment
for Logistic Regression Models
SAME Seamless Adaptive Multi-Arm Multi-Stage
Enrichment
SAMGEP A Semi-Supervised Method for Prediction of
Phenotype Event Times
SAMTx Sensitivity Assessment to Unmeasured
Confounding with Multiple Treatments
SAMUR Stochastic Augmentation of Matched Data Using
Restriction Methods
SAMprior Self-Adapting Mixture (SAM) Priors
SAMtool Stock Assessment Methods Toolkit
SANple Fitting Shared Atoms Nested Models via Markov
Chains Monte Carlo
SANvi Fitting Shared Atoms Nested Models via
Variational Bayes
SAP Statistical Analysis and Programming
SAPP Statistical Analysis of Point Processes
SAR Smart Adaptive Recommendations
SARP.compo Network-Based Interpretation of Changes in
Compositional Data
SARP.moodle XML Output Functions for Easy Creation of
Moodle Questions
SAScii Import ASCII Files Directly into R using Only a
'SAS' Input Script
SASdates Convert the Dates to 'SAS' Formats
SASmarkdown 'SAS' Markdown
SASmixed Data Sets from "SAS System for Mixed Models
SAVER Single-Cell RNA-Seq Gene Expression Recovery
SAiVE Functions Used for SAiVE Group Research,
Collaborations, and Publications
SAutomata Inference and Learning in Stochastic Automata
SBAGM Search Best ARIMA, GARCH, and MS-GARCH Model
SBI Simple Blinding Index for Randomized Controlled
Trials
SBICgraph Structural Bayesian Information Criterion for
Graphical Models
SBMTrees Longitudinal Sequential Imputation and
Prediction with Bayesian Trees Mixed-Effects
Models for Longitudinal Data
SBN Generate Stochastic Branching Networks
SBOAtools Secretary Bird Optimization for Continuous
Optimization and Neural Network Training
SBSDiff Satorra-Bentler Scaled Chi-Squared Difference
Test
SBdecomp Estimation of the Proportion of SB Explained by
Confounders
SBmedian Scalable Bayes with Median of Subset Posteriors
SC2API Blizzard SC2 API Wrapper
SCBiclust Identifies Mean, Variance, and Hierarchically
Clustered Biclusters
SCBmeanfd Simultaneous Confidence Bands for the Mean of
Functional Data
SCCS The Self-Controlled Case Series Method
SCDA Spatially-Clustered Data Analysis
SCDB Easily Access and Maintain Time-Based Versioned
Data (Slowly-Changing-Dimension)
SCE Stepwise Clustered Ensemble
SCEPtER Stellar CharactEristics Pisa Estimation gRid
SCEPtERbinary Stellar CharactEristics Pisa Estimation gRid
for Binary Systems
SCEnt Single Cell Entropy Analysis of Gene
Heterogeneity in Cell Populations
SCFMonitor Clear Monitor and Graphing Software Processing
Gaussian .log File
SCGLR Supervised Component Generalized Linear
Regression
SCI Standardized Climate Indices Such as SPI, SRI
or SPEI
SCIBER Single-Cell Integrator and Batch Effect Remover
SCIproj Creates a Scientific Project Skeleton as an R
Package
SCOPRO Score Projection Between in 'Vivo' and in
'Vitro' Datasets
SCOR Spherically Constrained Optimization Routine
SCORNET Semi-Supervised Calibration of Risk with Noisy
Event Times
SCORPION Single Cell Oriented Reconstruction of PANDA
Individually Optimized Networks
SCOUTer Simulate Controlled Outliers
SChangeBlock Spatial Structural Change Detection by an
Analysis of Variability Between Blocks of
Observations
SCoRES Simultaneous Confidence Region Excursion Sets
SCperf Functions for Planning and Managing Inventories
in a Supply Chain
SCpubr Generate Publication Ready Visualizations of
Single Cell Transcriptomics Data
SCtools Extensions for Synthetic Controls Analysis
SDAR Stratigraphic Data Analysis
SDAResources Datasets and Functions for 'Sampling: Design
and Analysis, 3rd Edition'
SDCNway Tools to Evaluate Disclosure Risk
SDGLM Scalable Bayesian Inference for Dynamic
Generalized Linear Models
SDGdetector Detect SDGs and Targets in Text
SDI Slow Digestibility Index
SDLfilter Filtering and Assessing the Sample Size of
Tracking Data
SDModels Spectrally Deconfounded Models
SDMtune Species Distribution Model Selection
SDPDmod Spatial Dynamic Panel Data Modeling
SDPrism2D Visualizing the Standard Deviation as the Size
of a Prism
SDT Self-Determination Theory Measures
SDaA Sampling: Design and Analysis
SE.EQ SE-Test for Equivalence
SEA Segregation Analysis
SEAGLE Scalable Exact Algorithm for Large-Scale
Set-Based Gene-Environment Interaction Tests
SEAHORS Spatial Exploration of ArcHaeological Objects
in R Shiny
SEARS Seamless Dose Escalation/Expansion with
Adaptive Randomization Scheme
SECFISH Disaggregate Variable Costs
SECP Statistical Estimation of Cluster Parameters
SEERaBomb SEER and Atomic Bomb Survivor Data Analysis
Tools
SEI Calculating Standardised Indices
SEIRfansy Extended Susceptible-Exposed-Infected-Recovery
Model
SEL Semiparametric Elicitation
SELF A Structural Equation Embedded Likelihood
Framework for Causal Discovery
SEMID Identifiability of Linear Structural Equation
Models
SEMdeep Structural Equation Modeling with Deep Neural
Network and Machine Learning Algorithms
SEMgraph Network Analysis and Causal Inference Through
Structural Equation Modeling
SEMsens A Tool for Sensitivity Analysis in Structural
Equation Modeling
SEMsensitivity SEM Sensitivity Analysis
SEPA Segment Profile Extraction via Pattern Analysis
SEPaLS Shrinkage for Extreme Partial Least-Squares
(SEPaLS)
SEQTaRget Sequential Trial Emulation
SESraster Raster Randomization for Null Hypothesis
Testing
SEofM Standard Error of Measurement
SEset Computing Statistically-Equivalent Path Models
SFDesign Space-Filling Designs
SFHNV Structural Forest for the Heterogeneous
Newsvendor Model
SFM A Package for Analyzing Skew Factor Models
SFOCDs Space Filling Optimal Covariate Designs
SFPL Sparse Fused Plackett-Luce
SFtools Space Filling Based Tools for Data Mining
SGB Simplicial Generalized Beta Regression
SGDinference Inference with Stochastic Gradient Descent
SGL Fit a GLM (or Cox Model) with a Combination of
Lasso and Group Lasso Regularization
SGP Student Growth Percentiles & Percentile Growth
Trajectories
SGPR Sparse Group Penalized Regression for Bi-Level
Variable Selection
SGPdata Exemplar Data Sets for Student Growth
Percentiles (SGP) Analyses
SHAKTI Suite for Heat-Related Adsorption Knowledge and
Thermodynamic Inference
SHAPBoost The SHAPBoost Feature Selection Algorithm
SHAPforxgboost SHAP Plots for 'XGBoost'
SHARK4R Accessing and Validating Marine Environmental
Data from 'SHARK' and Related Databases
SHELF Tools to Support the Sheffield Elicitation
Framework
SHIP Shrinkage Covariance Incorporating Prior
Knowledge
SHRED Setwise Hierarchical Rate of Erroneous
Discovery
SHT Statistical Hypothesis Testing Toolbox
SIAmodules Modules for 'ShinyItemAnalysis'
SIAtools 'ShinyItemAnalysis' Modules Development Toolkit
SIBER Stable Isotope Bayesian Ellipses in R
SIBERG Systematic Identification of Bimodally
Expressed Genes Using RNAseq Data
SID Structural Intervention Distance
SIDES Subgroup Identification Based on Differential
Effect Search
SIGN Similarity Identification in Gene Expression
SIHR Statistical Inference in High Dimensional
Regression
SILFS Subgroup Identification with Latent Factor
Structure
SILGGM Statistical Inference of Large-Scale Gaussian
Graphical Model in Gene Networks
SILM Simultaneous Inference for Linear Models
SIMEXBoost Boosting Method for High-Dimensional
Error-Prone Data
SIMICO Set-Based Inference for Multiple
Interval-Censored Outcomes
SIMMS Subnetwork Integration for Multi-Modal
Signatures
SIMPLE.REGRESSION OLS, Moderated, Logistic, and Count Regressions
Made Simple
SIMPLICA Biclustering via Simplivariate Component
Analysis
SIMle Estimation and Inference for General Time
Series Regression
SIMplyBee 'AlphaSimR' Extension for Simulating Honeybee
Populations and Breeding Programmes
SINRELEF.LD Reliability and Relative Efficiency in
Locally-Dependent Measures
SIP Single-Iteration Permutation for Large-Scale
Biobank Data
SIPDIBGE Collection of Household Survey Packages
Conducted by IBGE
SIPETool SIFT-MS and CPET Data Processor
SIRE Finding Feedback Effects in SEM and Testing for
Their Significance
SIRmcmc Compartmental Susceptible-Infectious-Recovered
(SIR) Model of Community and Household
Infection
SIRthresholded Sliced Inverse Regression with Thresholding
SIS Sure Independence Screening
SISIR Select Intervals Suited for Functional
Regression
SIT Association Measurement Through Sliced
Independence Test (SIT)
SITH A Spatial Model of Intra-Tumor Heterogeneity
SK4FGA Scott-Knott for Forensic Glass Analysis
SKAT SNP-Set (Sequence) Kernel Association Test
SKBD Shared Keyboard Designs for Phase I
Dose-Finding Trials
SKFCPD Fast Online Changepoint Detection for
Temporally Correlated Data
SKNN A Super K-Nearest Neighbor (SKNN)
Classification Algorithm
SLCARE Semiparametric Latent Class Analysis of
Recurrent Events
SLEMI Statistical Learning Based Estimation of Mutual
Information
SLFPCA Sparse Logistic Functional Principal Component
Analysis
SLGP Spatial Logistic Gaussian Process for Field
Density Estimation
SLHD Maximin-Distance (Sliced) Latin Hypercube
Designs
SLIC LIC for Distributed Skewed Regression
SLModels Stepwise Linear Models for Binary
Classification Problems under Youden Index
Optimisation
SLOPE Sorted L1 Penalized Estimation
SLOS ICU Length of Stay Prediction and Efficiency
Evaluation
SLPresElection Presidential Election Data of "Sri Lanka" from
1982 to 2015
SLRMss Symmetric Linear Regression Models for Small
Samples
SLSEdesign Optimal Regression Design under the
Second-Order Least Squares Estimator
SMAHP Survival Mediation Analysis of High-Dimensional
Proteogenomic Data
SMARTbayesR Bayesian Set of Best Dynamic Treatment Regimes
and Sample Size in SMARTs for Binary Outcomes
SMARTp Sample Size for SMART Designs in Non-Surgical
Periodontal Trials
SMASH Subclone Multiplicity Allocation and Somatic
Heterogeneity
SMDIC Identification of Somatic Mutation-Driven
Immune Cells
SMFilter Filtering Algorithms for the State Space Models
on the Stiefel Manifold
SMLE Joint Feature Screening via Sparse MLE
SMLoutliers Outlier Detection Using Statistical and Machine
Learning Methods
SMM Simulation and Estimation of Multi-State
Discrete-Time Semi-Markov and Markov Models
SMMAL Semi-Supervised Estimation of Average Treatment
Effects
SMMT The Swiss Municipal Data Merger Tool Maps
Municipalities Over Time
SMNCensReg Fitting Univariate Censored Regression Model
Under the Family of Scale Mixture of Normal
Distributions
SMNlmec Scale Mixture of Normal Distribution in Linear
Mixed-Effects Model
SMOTEWB Imbalanced Resampling using SMOTE with Boosting
(SMOTEWB)
SMPracticals Practicals for Use with Davison (2003)
Statistical Models
SMR Externally Studentized Midrange Distribution
SMUT Multi-SNP Mediation Intersection-Union Test
SMVar Structural Model for Variances
SNBdata Download Data from the Swiss National Bank
(SNB)
SNFtool Similarity Network Fusion
SNMA Stream Network Movement Analyses
SNPRelate Parallel Computing Toolset for Relatedness and
Principal Component Analysis of SNP Data
SNPannotator Automated Functional Annotation of Genetic
Variants and Linked Proxies
SNPassoc SNPs-Based Whole Genome Association Studies
SNPfiltR Interactively Filter SNP Datasets
SNSFdatasets Download Datasets from the Swiss National
Science Foundation (SNF, FNS, SNSF)
SNSchart Sequential Normal Scores in Statistical Process
Management
SNSeg Self-Normalization(SN) Based Change-Point
Estimation for Time Series
SNSequate Standard and Nonstandard Statistical Models and
Methods for Test Equating
SNVLFDR Empirical Bayes Single Nucleotide Variant
Calling
SOAR Memory Management in R by Delayed Assignments
SOAs Creation of Stratum Orthogonal Arrays
SOHPIE Statistical Approach via Pseudo-Value
Information and Estimation
SOIL Sparsity Oriented Importance Learning
SOMEnv SOM Algorithm for the Analysis of Multivariate
Environmental Data
SOMMD Self Organising Maps for the Analysis of
Molecular Dynamics Data
SOMbrero SOM Bound to Realize Euclidean and Relational
Outputs
SOMnmR Analysis of Soil Organic Matter using Nuclear
Magnetic Resonance
SONO Scores of Nominal Outlyingness (SONO)
SOP Generalised Additive P-Spline Regression Models
Estimation
SOPC The Sparse Online Principal Component
Estimation Algorithm
SOR Estimation using Sequential Offsetted
Regression
SP2000 Catalogue of Life Toolkit
SPACO Spatial Component Analysis for Spatial
Sequencing Data
SPADAR Spherical Projections of Astronomical Data
SPARRAfairness Analysis of Differential Behaviour of SPARRA
Score Across Demographic Groups
SPARTAAS Statistical Pattern Recognition and daTing
using Archaeological Artefacts assemblageS
SPAtest Score Test and Meta-Analysis Based on
Saddlepoint Approximation
SPB Simple Progress Bars for Procedural Coding
SPCALDA A New Reduced-Rank Linear Discriminant Analysis
Method
SPCompute Compute Power or Sample Size for GWAS with
Covariate Effect
SPECIES Statistical Package for Species Richness
Estimation
SPECK Receptor Abundance Estimation using Reduced
Rank Reconstruction and Clustered Thresholding
SPEDInstabR Estimation of the Relative Importance of
Factors Affecting Species Distribution Based on
Stability Concept
SPEI Calculation of the Standardized
Precipitation-Evapotranspiration Index
SPEV Unsmoothed and Smoothed Penalized PCA using
Nesterov Smoothing
SPIChanges Improves the Interpretation of the Standardized
Precipitation Index Under Changing Climate
Conditions
SPINA Structure Parameter Inference Approach
SPLICE Synthetic Paid Loss and Incurred Cost
Experience (SPLICE) Simulator
SPORTSCausal Spillover Time Series Causal Inference
SPOUSE Scatter Plots Over-Viewed Using Summary
Ellipses
SPPcomb Combining Different Spatial Datasets in Cancer
Risk Estimation
SPREDA Statistical Package for Reliability Data
Analysis
SPRT Sequential Probability Ratio Test (SPRT) Method
SPSL Site Percolation on Square Lattices (SPSL)
SPSP Selection by Partitioning the Solution Paths
SPYvsSPY Spy vs. Spy Data
SPlit Split a Dataset for Training and Testing
SPreg Bias Reduction in the Skew-Probit Model for a
Binary Response
SQI Soil Quality Index
SQIpro Comprehensive Soil Quality Index Computation
and Visualization
SQL Executes 'SQL' Statements
SQLFormatteR Format SQL Queries
SQLove Execute 'SQL' Scripts in 'R' Containing
Multiple Queries
SQMtools Analyze Results Generated by the 'SqueezeMeta'
Pipeline
SQN Subset Quantile Normalization
SQRL Enhances Interaction with 'ODBC' Databases
SQUAREM Squared Extrapolation Methods for Accelerating
EM-Like Monotone Algorithms
SRMData Data Files Supporting "Scientific Research and
Methodology" by Peter K. Dunn (2025)
SRMERS Semi-Parametric Shape-Restricted Fixed/Mixed
Effect(s) Regression Spline
SRS Scaling with Ranked Subsampling
SRTtools Adjust Srt File to Get Better Experience when
Watching Movie
SRscore Simple Transcriptome Meta-Analysis for
Identifying Stress-Responsive Genes
SSAforecast SSA Based Decomposition and Forecasting
SSBtools Algorithms and Tools for Tabular Statistics and
Hierarchical Computations
SSDM Stacked Species Distribution Modelling
SSDforR Functions to Analyze Single System Data
SSEparser Parse Server-Sent Events
SSGL Spike-and-Slab Group Lasso for
Group-Regularized Generalized Linear Models
SSHAARP Searching Shared HLA Amino Acid Residue
Prevalence
SSIMmap The Structural Similarity Index Measure for
Maps
SSLASSO The Spike-and-Slab LASSO
SSLfmm Semi-Supervised Learning under a
Mixed-Missingness Mechanism in Finite Mixture
Models
SSM Fit and Analyze Smooth Supersaturated Models
SSN2 Spatial Modeling on Stream Networks
SSNbayes Bayesian Spatio-Temporal Analysis in Stream
Networks
SSNbler Assemble 'SSN' Objects
SSOSVM Stream Suitable Online Support Vector Machines
SSP Simulated Sampling Procedure for Community
Ecology
SSRA Sakai Sequential Relation Analysis
SSRMST Sample Size Calculation using Restricted Mean
Survival Time
SSRTcalc Easy SSRT Calculation
SSReliabilityClaytonMWD
Stress-Strength Reliability Model with MWD
Marginals via Clayton Copula
SSVS Functions for Stochastic Search Variable
Selection (SSVS)
SSplots Stock Status Plots (SSPs)
SSsimple State Space Models
STAND Statistical Analysis of Non-Detects
STAREG An Empirical Bayes Approach for Replicability
Analysis Across Two Studies
STARTS Functions for the STARTS Model
STARTdesign Single to Double Arm Transition Design for
Phase II Clinical Trials
STATcubeR R Interface for the 'STATcube' REST API and
Open Government Data
STB Simultaneous Tolerance Bounds
STCCGEV Conditional Copula Model for Crop Yield
Forecasting
STCYP Spatio-Temporal Crop Yield Prediction
STDistance Spatial Transcriptomics Distance Calculation
and Visualization
STEPCAM ABC-SMC Inference of STEPCAM
STFTS Statistical Tests for Functional Time Series
STICr Process Stream Temperature, Intermittency, and
Conductivity (STIC) Sensor Data
STMotif Discovery of Motifs in Spatial-Time Series
STMr Strength Training Manual R-Language Functions
STOPES Selection Threshold Optimized Empirically via
Splitting
STPGA Selection of Training Populations by Genetic
Algorithm
STREAK Receptor Abundance Estimation using Feature
Selection and Gene Set Scoring
STRINGdb STRINGdb - Protein-Protein Interaction Networks
and Functional Enrichment Analysis
STV Single Transferable Vote Counting
STraTUS Enumeration and Uniform Sampling of
Transmission Trees for a Known Phylogeny
SUMMER Small-Area-Estimation Unit/Area Models and
Methods for Estimation in R
SUMO Generating Multi-Omics Datasets for Testing and
Benchmarking
SUNGEO Sub-National Geospatial Data Archive:
Geoprocessing Toolkit
SUSENAS National Socio-Economic Survey Data Collection
Indonesia
SUSY Surrogate Synchrony
SVARtca Transmission Channel Analysis in Structural VAR
Models
SVAlignR Recovering Structure of Long Molecules from
Structural Variation Data
SVDMx Child/Child-Adult Mortality-Indexed Model
Mortality Age Schedules
SVDNF Discrete Nonlinear Filtering for Stochastic
Volatility Models
SVEMnet Self-Validated Ensemble Models with Lasso and
Relaxed Elastic Net Regression
SVG Spatially Variable Genes Detection Methods for
Spatial Transcriptomics
SVMD Spearman Variational Mode Decomposition
SVMMaj Implementation of the SVM-Maj Algorithm
SVN Statistically Validated Networks
SWMPr Retrieving, Organizing, and Analyzing Estuary
Monitoring Data
SWTools Helper Tools for Australian Hydrologists
SYNCSA Analysis of Functional and Phylogenetic
Patterns in Metacommunities
SafeVote Election Vote Counting with Safety Features
SailoR An Extension of the Taylor Diagram to
Two-Dimensional Vector Data
SampleCore Sampling Strategies for Constructing Core
Collections
SampleSize4ClinicalTrials
Sample Size Calculation for the Comparison of
Means or Proportions in Phase III Clinical
Trials
SampleSizeCalculator Sample Size Calculator under Complex Survey
Design
SampleSizeDiagnostics Choosing Sample Size for Evaluating a
Diagnostic Test
SampleSizeMeans Sample Size Calculations for Normal Means
SampleSizeProportions Calculating Sample Size Requirements when
Estimating the Difference Between Two Binomial
Proportions
SampleSizeSingleArmSurvival
Calculate Sample Size for Single-Arm Survival
Studies
SamplingBigData Sampling Methods for Big Data
SamplingStrata Optimal Stratification of Sampling Frames for
Multipurpose Sampling Surveys
SanFranBeachWater Downloads and Tidies the San Francisco Public
Utilities Commission Beach Water Quality
Monitoring Program Data
SangerTools Tools for Population Health Management
Analytics
SaturnCoefficient Statistical Evaluation of UMAP Dimensionality
Reductions
ScaleSpikeSlab Scalable Spike-and-Slab
ScaledMatrix Creating a DelayedMatrix of Scaled and Centered
Values
Scalelink Create Scale Linkage Scores
ScatterDensity Density Estimation and Visualization of 2D
Scatter Plots
SchoolDataIT Retrieve, Harmonise and Map Open Data Regarding
the Italian School System
SciViews SciViews - Main package
ScoreEB Score Test Integrated with Empirical Bayes for
Association Study
ScottKnott The ScottKnott Clustering Algorithm
ScottKnottESD The Scott-Knott Effect Size Difference (ESD)
Test
ScreeNOT 'ScreeNOT': MSE-Optimal Singular Value
Thresholding in Correlated Noise
ScreenClean Screen and clean variable selection procedures
ScriptMapR R Script Visualization in Cytoscape
SdeaR Stochastic Data Envelopment Analysis
SeBR Semiparametric Bayesian Regression Analysis
SeaGraphs Sea Currents to Connectivity Transformation
SeaSondeR Radial Metrics from SeaSonde HF-Radar Data
SeaVal Validation of Seasonal Weather Forecasts
SearchTrees Spatial Search Trees
SeasEpi Spatiotemporal Modeling of Seasonal Infectious
Disease
SecretsProvider Save and Retrieve Name-Value Pairs to and from
a File
SeedImbibition Seed Imbibition Percentage
SeedMaker Generate a Collection of Seeds from a Single
Seed
SeedVigorIndex Seed Vigor Index
SegCorr Detecting Correlated Genomic Regions
SegEnvIneq Environmental Inequality Indices Based on
Segregation Measures
Sejong KoNLP static dictionaries and Sejong project
resources.
SeleMix Selective Editing via Mixture Models
Select Determines Species Probabilities Based on
Functional Traits
SelectBoost A General Algorithm to Enhance the Performance
of Variable Selection Methods in Correlated
Datasets
SelectBoost.FDA SelectBoost-Style Variable Selection for
Functional Data Analysis
SelectBoost.beta Stability-Selection via Correlated Resampling
for Beta-Regression Models
SelectBoost.gamlss Stability-Selection via Correlated Resampling
for 'GAMLSS' Models
SelectBoost.quantile 'SelectBoost'-Style Variable Selection for
Quantile Regression
SelectionBias Calculates Bounds for the Selection Bias for
Binary Treatment and Outcome Variables
SelfControlledCaseSeries
Self-Controlled Case Series
SelfControlledCohort Self-Controlled Cohort Population-Level
Estimation
SemNeT Methods and Measures for Semantic Network
Analysis
SemNetCleaner An Automated Cleaning Tool for Semantic and
Linguistic Data
SemNetDictionaries Dictionaries for the 'SemNetCleaner' Package
SemanticDistance Compute Semantic Distance Between Text
Constituents
SemiCompRisks Hierarchical Models for Parametric and
Semi-Parametric Analyses of Semi-Competing
Risks Data
SemiMarkov Multi-States Semi-Markov Models
SemiPar.depCens Copula Based Cox Proportional Hazards Models
for Dependent Censoring
SemiparMF Semiparametric Spatiotemporal Model with Mixed
Frequencies
SenSpe Estimating Specificity at Controlled
Sensitivity, or Vice Versa
SenSrivastava Datasets from Sen & Srivastava
SensIAT Sensitivity Analysis for Irregular Assessment
Times
SensMap Sensory and Consumer Data Mapping
SensitivityCaseControl
Sensitivity Analysis for Case-Control Studies
SensoMineR Sensory Data Analysis
SentimentAnalysis Dictionary-Based Sentiment Analysis
SepTest Tests for First-Order Separability in
Spatio-Temporal Point Processes
SeqAlignR Sequence Alignment and Visualization Tool
SeqFeatR A Tool to Associate FASTA Sequences and
Features
SeqKat Detection of Kataegis
SeqMADE Network Module-Based Model in the Differential
Expression Analysis for RNA-Seq
Seqinfo A simple S4 class for storing basic information
about a collection of genomic sequences
SequenceSpikeSlab Exact Bayesian Model Selection Methods for the
Sparse Normal Sequence Model
Sequential Exact Sequential Analysis for Poisson and
Binomial Data
SequentialDesign Observational Database Study Planning using
Exact Sequential Analysis for Poisson and
Binomial Data
SeroTrackR Serology-Based Data Analysis and Visualization
SerolyzeR Reading, Quality Control and Preprocessing of
MBA (Multiplex Bead Assay) Data
SetMethods Functions for Set-Theoretic Multi-Method
Research and Advanced QCA
SetTest Group Testing Procedures for Signal Detection
and Goodness-of-Fit
Seurat Tools for Single Cell Genomics
SeuratExplorer An 'Shiny' App for Exploring scRNA-seq Data
Processed in 'Seurat'
SeuratObject Data Structures for Single Cell Data
ShapDoE Approximation of the Shapley Values Based on
Experimental Designs
ShapeChange Change-Point Estimation using Shape-Restricted
Splines
ShapePattern Tools for Analyzing Shapes and Patterns
ShapeSelectForest Shape Selection for Landsat Time Series of
Forest Dynamics
ShapleyOutlier Multivariate Outlier Explanations using Shapley
Values and Mahalanobis Distances
ShapleyValue Shapley Value Regression for Relative
Importance of Attributes
SharkDemography Shark Demographic Analyses Using Leslie Matrix
Models
SharpeR Statistical Significance of the Sharpe Ratio
SheetReader Parse xlsx Files
ShellChron Builds Chronologies from Oxygen Isotope
Profiles in Shells
SherlockHolmes Building a Concordance of Terms in a Series of
Texts
ShiVa Detection of Evolutionary Shifts in Both
Optimal Value and Variance
ShiftConvolvePoibin Exactly Computing the Tail of the
Poisson-Binomial Distribution
ShiftShareSE Inference in Regressions with Shift-Share
Structure
ShinyBlock Multi-Protocol Blockchain Simulator and
Enterprise Ledger Framework
ShinyItemAnalysis Test and Item Analysis via Shiny
ShinyQuickStarter 'RStudio' Addin for Building Shiny Apps per
Drag & Drop
ShinyWizard An Interactive Wizard to Design, Build, and
Deploy R Packages Demo Presentation
ShortForm Automatic Short Form Creation
ShortRead FASTQ input and manipulation
ShrinkCovMat Shrinkage Covariance Matrix Estimators
ShrinkageTrees Bayesian Tree Ensembles for Survival Analysis
and Causal Inference
SiER Signal Extraction Approach for Sparse
Multivariate Response Regression
SiFINeT Single Cell Feature Identification with Network
Topology
SiMRiv Simulating Multistate Movements in
River/Heterogeneous Landscapes
SiPhyNetwork A Phylogenetic Simulator for Reticulate
Evolution
SiZer Significant Zero Crossings
Sie2nts Sieve Methods for Non-Stationary Time Series
Sieve Nonparametric Estimation by the Method of
Sieves
SigBridgeRUtils Some Utilities & Base Supports for 'SigBridgeR'
SightabilityModel Wildlife Sightability Modeling
Signac Analysis of Single-Cell Chromatin Data
SignacX Cell Type Identification and Discovery from
Single Cell Gene Expression Data
SignalY Signal Extraction from Panel Data via Bayesian
Sparse Regression and Spectral Decomposition
SignifReg Consistent Significance Controlled Variable
Selection in Generalized Linear Regression
Silhouette Proximity Measure Based Diagnostics for
Standard, Soft, and Multi-Way Clustering
SillyPutty Silly Putty Clustering
Sim.DiffProc Simulation of Diffusion Processes
SimBIID Simulation-Based Inference Methods for
Infectious Disease Models
SimBaRepro Simulation-Based, Finite-Sample Inference via
Repro Samples
SimComp Simultaneous Comparisons for Multiple Endpoints
SimCop Simulate from Arbitrary Copulae
SimCorMultRes Simulates Correlated Multinomial Responses
SimCorrMix Simulation of Correlated Data with Multiple
Variable Types Including Continuous and Count
Mixture Distributions
SimDesign Structure for Organizing Monte Carlo Simulation
Designs
SimDissolution Modeling and Assessing Similarity of Drug
Dissolutions Profiles
SimEUCartelLaw Simulation of Legal Exemption System for
European Cartel Law
SimEngine A Modular Framework for Statistical Simulations
in R
SimIndep WISE: a Weighted Similarity Aggregation Test
for Serial Independence
SimInf A Framework for Data-Driven Stochastic Disease
Spread Simulations
SimJoint Simulate Joint Distribution
SimKid Simulate Virtual Pediatrics using
Anthropometric Growth Charts
SimMultiCorrData Simulation of Correlated Data with Multiple
Variable Types
SimNPH Simulate Non-Proportional Hazards
SimRDS Simulation of Respondent Driven Samples
SimReg Similarity Regression
SimSST Simulated Stop Signal Task Data
SimSeq Nonparametric Simulation of RNA-Seq Data
SimSurvey Test Surveys by Simulating Spatially-Correlated
Populations
SimTOST Sample Size Estimation for Bio-Equivalence
Trials Through Simulation
SimTimeVar Simulate Longitudinal Dataset with Time-Varying
Correlated Covariates
SimVitD Simulation Tools for Planning Vitamin D Studies
SimilarityMeasures Trajectory Similarity Measures
Simile Interact with Simile Models
SimpleUpset Create Upset Plots
SimplicialComplex Topological Data Analysis: Simplicial Complex
SimplicialCubature Integration of Functions Over Simplices
SimplyAgree Flexible and Robust Agreement and Reliability
Analyses
SimtablR Easy Publication-Ready Tables and Regression
Analysis
SimuRg Building, Fitting and Evaluating PK/PD Modeles
SingleArmMRCT Regional Consistency Probability for Single-Arm
Multi-Regional Clinical Trials
SingleCaseES A Calculator for Single-Case Effect Sizes
SingleCellComplexHeatMap
Complex Heatmaps for Single Cell Expression
Data with Dual Information Display
SingleCellExperiment S4 Classes for Single Cell Data
SingleCellStat A Toolkit for Statistical Analysis of
Single-Cell Omics Data
SixSigma Six Sigma Tools for Quality Control and
Improvement
SkeletalVis Exploration and Visualisation of Skeletal
Transcriptomics Data
SkewHyperbolic The Skew Hyperbolic Student t-Distribution
Skillings.Mack The Skillings-Mack Test Statistic for Block
Designs with Missing Observations
SleepCycles Sleep Cycle Detection
Sleuth2 Data Sets from Ramsey and Schafer's
"Statistical Sleuth (2nd Ed)"
Sleuth3 Data Sets from Ramsey and Schafer's
"Statistical Sleuth (3rd Ed)"
SlicedLHD Sliced Latin Hypercube Designs
Slick Interactive Visualization of MSE Results
SlideCNA Calls Copy Number Alterations from Slide-Seq
Data
SlidingWindows Methods for Time Series Analysis
SlimR Adaptive Machine Learning-Powered,
Context-Matching Tool for Single-Cell and
Spatial Transcriptomics Annotation
SlotLim Catch Advice for Fisheries Managed by Harvest
Slot Limits
SmCCNet Sparse Multiple Canonical Correlation Network
Analysis Tool ('SmCCNet')
SmallCountRounding Small Count Rounding of Tabular Data
SmartEDA Summarize and Explore the Data
SmartMeterAnalytics Methods for Smart Meter Data Analysis
SmartSVA Fast and Robust Surrogate Variable Analysis
SmarterPoland Tools for Accessing Various Datasets Developed
by the Foundation SmarterPoland.pl
SmithWilsonYieldCurve Smith-Wilson Yield Curve Construction
SmokingHistoryGenerator
R Package for the Smoking History Generator
SmoothHazard Estimation of Smooth Hazard Models for
Interval-Censored Data
SmoothPLS Partial Least-Squares Algorithm for Categorical
and Scalar Functional Data
SmoothWin Soft Windowing for Linear and Non-Linear Models
Snake Game of Snake
SnowData Historical Data from John Snow's 1854 Cholera
Outbreak Map
SnowballC Snowball Stemmers Based on the C 'libstemmer'
UTF-8 Library
Sobol4R Sobol Indices for Models with Fixed and
Stochastic Parameters
Sofi Interfaz interactiva con fines didacticos
SoftBart Implements the SoftBart Algorithm
SoftClustering Soft Clustering Algorithms
SoilConservation Soil and Water Conservation
SoilFDA Fractal Dimension Analysis of Soil Particle
Size Distribution
SoilFunctionality Soil Functionality Measurement
SoilHyP Soil Hydraulic Properties
SoilManageR Calculate Soil Management Indicators for
Agricultural Practice Assessment
SoilR Models of Soil Organic Matter Decomposition
SoilSaltIndex Soil Salinity Indices Generation using
Satellite Data
SoilTaxonomy A System of Soil Classification for Making and
Interpreting Soil Surveys
SoilTesting Organic Carbon and Plant Available Nutrient
Contents in Soil
Sojourn Apply Sojourn Methods for Processing ActiGraph
Accelerometer Data
Sojourn.Data Supporting Objects for Sojourn Accelerometer
Methods
SolveSAPHE Solver Suite for Alkalinity-PH Equations
SomaDataIO Input/Output 'SomaScan' Data
SongEvo An Individual-Based Model of Bird Song
Evolution
SorptionAnalysis Static Adsorption Experiment Plotting and
Analysis
SoundShape Sound Waves Onto Morphometric Data
SoundexBR Phonetic-Coding for Portuguese
SoupX Single Cell mRNA Soup eXterminator
SouthParkRshiny Data and 'Shiny' Application for the Show
'SouthPark'
SoyNAM Soybean Nested Association Mapping Dataset
SoyURT USDA Northern Region Uniform Soybean Tests
Dataset
SpATS Spatial Analysis of Field Trials with Splines
SpNMF Supervised NMF
SpPOP Generation of Spatial Population under
Different Levels of Relationships among
Variables
SpTe2M Nonparametric Modeling and Monitoring of
Spatio-Temporal Data
SpaCCI Spatially Aware Cell-Cell Interaction Analysis
SpaCOAP High-Dimensional Spatial Covariate-Augmented
Overdispersed Poisson Factor Model
SpaDES Develop and Run Spatially Explicit Discrete
Event Simulation Models
SpaDES.core Core Utilities for Developing and Running
Spatially Explicit Discrete Event Models
SpaDES.tools Additional Tools for Developing Spatially
Explicit Discrete Event Simulation (SpaDES)
Models
SpaTopic Topic Inference to Identify Tissue Architecture
in Multiplexed Images
SpaceTimeBSS Blind Source Separation for Multivariate
Spatio-Temporal Data
SpadeR Species-Richness Prediction and Diversity
Estimation with R
SparseArray High-performance sparse data representation and
manipulation in R
SparseBiplots 'HJ-Biplot' using Different Ways of
Penalization Plotting with 'ggplot2'
SparseChol Sparse Matrix C++ Classes Including Sparse
Cholesky LDL Decomposition of Symmetric
Matrices
SparseDC Implementation of SparseDC Algorithm
SparseFunClust Sparse Functional Clustering
SparseGrid Sparse grid integration in R
SparseICA Sparse Independent Component Analysis
SparseLPM The Sparse Latent Position Model for
Nonnegative Interaction Data
SparseM Sparse Linear Algebra
SparseMDC Implementation of SparseMDC Algorithm
SparseMSE 'Multiple Systems Estimation for Sparse Capture
Data'
SparseTSCGM Sparse Time Series Chain Graphical Models
SparseVFC Sparse Vector Field Consensus for Vector Field
Learning
SpatEntropy Spatial Entropy Measures
SpatFD Functional Geostatistics: Univariate and
Multivariate Functional Spatial Prediction
SpatGC Bayesian Modeling of Spatial Count Data
SpatGRID Spatial Grid Generation from Longitude and
Latitude List
SpatMCA Regularized Spatial Maximum Covariance Analysis
SpatPCA Regularized Principal Component Analysis for
Spatial Data
SpatialAcc Spatial Accessibility Measures
SpatialBSS Blind Source Separation for Multivariate
Spatial Data
SpatialDownscaling Methods for Spatial Downscaling Using Deep
Learning
SpatialEpi Methods and Data for Spatial Epidemiology
SpatialExperiment S4 Class for Spatially Resolved -omics Data
SpatialExtremes Modelling Spatial Extremes
SpatialGEV Fit Spatial Generalized Extreme Value Models
SpatialGraph The SpatialGraph Class and Utilities
SpatialInference Tools for Statistical Inference with Geo-Coded
Data
SpatialKDE Kernel Density Estimation for Spatial Data
SpatialNP Multivariate Nonparametric Methods Based on
Spatial Signs and Ranks
SpatialPOP Generation of Spatial Data with Spatially
Varying Model Parameter
SpatialPack Tools for Assessment the Association Between
Two Spatial Processes
SpatialPosition Spatial Position Models
SpatialRDD Conduct Multiple Types of Geographic Regression
Discontinuity Designs
SpatialRegimes Spatial Constrained Clusterwise Regression
SpatialRoMLE Robust Maximum Likelihood Estimation for
Spatial Error Model
SpatialTools Tools for Spatial Data Analysis
SpatialVS Spatial Variable Selection
SpatialVx Spatial Forecast Verification
Spbsampling Spatially Balanced Sampling
SpeTestNP Non-Parametric Tests of Parametric
Specifications
SpecDetec Change Points Detection with Spectral
Clustering
SpecHelpers Spectroscopy Related Utilities
SpecsVerification Forecast Verification Routines for Ensemble
Forecasts of Weather and Climate
Spectra Spectra Infrastructure for Mass Spectrometry
Data
SpectralClMixed Spectral Clustering for Mixed Type Data
Spectran Visual and Non-Visual Spectral Analysis of
Light
Spectrum Fast Adaptive Spectral Clustering for Single
and Multi-View Data
SphereOptimize Optimization on a Unit Sphere
SphericalCubature Numerical Integration over Spheres and Balls in
n-Dimensions; Multivariate Polar Coordinates
SpiceFP Sparse Method to Identify Joint Effects of
Functional Predictors
Splinets Functional Data Analysis using Splines and
Orthogonal Spline Bases
SplitGLM Split Generalized Linear Models
SplitKnockoff Split Knockoffs for Structural Sparsity
SplitReg Split Regularized Regression
SplitSplitPlot Analysis of Split-Split-Plot Experiments
(Analise De Experimentos Em Parcela
Subsubdividida)
SplitWise Hybrid Stepwise Regression with Single-Split
Dummy Encoding
SpoMAG Probability of Sporulation Potential in MAGs
SportMiner Text Mining and Topic Modeling for Sport
Science Literature
SportsTour Display Tournament Fixtures using Knock Out and
Round Robin Techniques
Spower Power Analyses using Monte Carlo Simulations
SppTrend Analyzing Linear Trends in Species Occurrence
Data
SpuriousMemory Testing True Long Memory Against Spurious Long
Memory
SqlRender Rendering Parameterized SQL and Translation to
Dialects
SqueakR An Experiment Interface for 'DeepSqueak'
Bioacoustics Research
Ssarkartrim Trimmed-k Mean Estimator
SscSrs Sample Size Calculator for Estimation of
Population Mean and Proportion under SRS
Sshaped Nonparametric, Tuning-Free Estimation of
S-Shaped Functions
Sstack Bootstrap Stacking of Random Forest Models for
Heterogeneous Data
StAMPP Statistical Analysis of Mixed Ploidy
Populations
StMoMo Stochastic Mortality Modelling
StMoSim Quantile-Quantile Plot with Several Gaussian
Simulations
StReg Student's t Regression Models
StabilityApp Stability Analysis App for GEI in
Multi-Environment Trials
StabilizedRegression Stabilizing Regression and Variable Selection
StableEstim Estimate the Four Parameters of Stable Laws
using Different Methods
StablePopulation Calculates Alpha for a Stable Population
StackImpute Tools for Analysis of Stacked Multiple
Imputations
StakeholderAnalysis Measuring Stakeholder Influence
StanHeaders C++ Header Files for Stan
Stat2Data Datasets for Stat2
StatDA Statistical Analysis for Environmental Data
StatDataML Read and Write StatDataML Files
StatDeriveR Step-by-Step Derivation and Simulation
Verification in Mathematical Statistics
StatMatch Statistical Matching or Data Fusion
StatPerMeCo Statistical Performance Measures to Evaluate
Covariance Matrix Estimates
StatRank Statistical Rank Aggregation: Inference,
Evaluation, and Visualization
StatRec A Statistical Method for Multi-Item Rating and
Recommendation Problems
StatTeacherAssistant An App that Assists Intro Statistics
Instructors with Data Sets
StatTools All-in-One Chi Distribution CI
Statamarkdown 'Stata' Markdown
StateLevelForest Historical State-Level Forest Cover Data in the
United States
StatisticTeach1 Interactive Tool for Statistics and Probability
StatsTFLValR Utilities for Validation of Clinical Trial
'SDTM', 'ADaM' and 'TFL' Outputs
StealLikeBayes A Compendium of Bayesian Statistical Routines
Written in 'C++'
SteinIV Semi-Parametric Stein-Like Estimator with
Instrumental Variables
StemAnalysis Reconstructing Tree Growth and Carbon
Accumulation with Stem Analysis Data
StempCens Spatio-Temporal Estimation and Prediction for
Censored/Missing Responses
StepBeta Stepwise Procedure for Beta, Beta-Binomial and
Negative Binomial Regression Models
StepGWR A Hybrid Spatial Model for Prediction and
Capturing Spatial Variation in the Data
StepReg Stepwise Regression Analysis
StepRegShiny Graphical User Interface for 'StepReg'
SteppedPower Power Calculation for Stepped Wedge Designs
StepwiseTest Multiple Testing Method to Control Generalized
Family-Wise Error Rate and False Discovery
Proportion
StereoMorph Stereo Camera Calibration and Reconstruction
SticsRFiles Read and Modify 'STICS' Input/Output Files
StochBlock Stochastic Blockmodeling of One-Mode and Linked
Networks
StochSimR Stochastic Process Simulation Engine
StockDistFit Fit Stock Price Distributions
Storm Write Storm Bolts in R using the Storm
Multi-Language Protocol.
StormR Analyzing the Behaviour of Wind Generated by
Tropical Storms and Cyclones
StrainRanking Ranking of Pathogen Strains
StratPal Stratigraphic Paleobiology Modeling Pipelines
StratSel Strategic Selection Estimator
StrathE2E2 End-to-End Marine Food Web Model
StratifiedBalancing Stratified Covariate Balancing
StratifiedMedicine Stratified Medicine
StratifiedRF Builds Trees by Sampling Variables in Groups
StratifiedSampling Different Methods for Stratified Sampling
StratigrapheR Integrated Stratigraphy
StreamCatTools 'StreamCatTools'
StreamMetabolism Calculate Single Station Metabolism from
Diurnal Oxygen Curves
StressStrength Computation and Estimation of Reliability of
Stress-Strength Models
String2AdjMatrix Creates an Adjacency Matrix from a List of
Strings
StroupGLMM R Codes and Datasets for Generalized Linear
Mixed Models: Modern Concepts, Methods and
Applications by Walter W. Stroup
StructuralDecompose Decomposes a Level Shifted Time Series
StructureMC Structured Matrix Completion
StuteTest Stute (1997) Linearity Test
Stype.est S-Type Estimators
Styperidge.reg S-Type Ridge Regression
SuRF.vs Subsampling Ranking Forward Selection (SuRF)
SubTS Positive Tempered Stable Distributions and
Related Subordinators
SubVis Visual Exploration of Protein Alignments
Resulting from Multiple Substitution Matrices
SubgrpID Patient Subgroup Identification for Clinical
Drug Development
SubtypeDrug Prioritization of Candidate Cancer Subtype
Specific Drugs
SudokuDesigns Sudoku as an Experimental Design
SuessR Suess and Laws Corrections for Marine Stable
Carbon Isotope Data
SumcaVer1 Mean Square Prediction Error Estimation in
Small Area Estimation
SummarizedExperiment A container (S4 class) for matrix-like assays
SunCalcMeeus Sun Position and Daylight Calculations
Sunclarco Survival Analysis using Copulas
SunsVoc Constructing Suns-Voc from Outdoor Time-Series
I-V Curves
SupMZ Detecting Structural Change with
Heteroskedasticity
SuperCell Simplification of scRNA-Seq Data by Merging
Together Similar Cells
SuperExactTest Exact Test and Visualization of Multi-Set
Intersections
SuperGauss Superfast Likelihood Inference for Stationary
Gaussian Time Series
SuperLearner Super Learner Prediction
SuperRanker Sequential Rank Agreement
SuperSurv A Unified Framework for Machine Learning
Ensembles in Survival Analysis
SuperpixelImageSegmentation
Superpixel Image Segmentation
Superpower Simulation-Based Power Analysis for Factorial
Designs
SuppDists Supplementary Distributions
SurfRough Calculate Surface/Image Texture Indexes
SurfaceTortoise Find Optimal Sampling Locations Based on
Spatial Covariate(s)
SurprisalAnalysis Information Theoretic Analysis of Gene
Expression Data
Surrogate Evaluation of Surrogate Endpoints in Clinical
Trials
SurrogateBMA Flexible Evaluation of Surrogate Markers with
Bayesian Model Averaging
SurrogateOutcome Estimation of the Proportion of Treatment
Effect Explained by Surrogate Outcome
Information
SurrogateParadoxTest Empirical Testing of Surrogate Paradox
Assumptions
SurrogateRank Rank-Based Test to Evaluate a Surrogate Marker
SurrogateRegression Surrogate Outcome Regression Analysis
SurrogateSeq Group Sequential Testing of a Treatment Effect
Using a Surrogate Marker
SurrogateTest Early Testing for a Treatment Effect using
Surrogate Marker Information
SurvCorr Correlation of Bivariate Survival Times
SurvDisc Discrete Time Survival and Longitudinal Data
Analysis
SurvEval Methods for the Evaluation of Survival Models
SurvGME Analysis of Survival Data under Graphical and
Measurement Error Models
SurvHiDim High Dimensional Survival Data Analysis
SurvImpute Multiple Imputation for Missing Covariates in
Time-to-Event Data
SurvLong Analysis of Proportional Hazards Model with
Sparse Longitudinal Covariates
SurvMA Model Averaging Prediction of Personalized
Survival Probabilities
SurvMI Multiple Imputation Method in Survival Analysis
SurvMetrics Predictive Evaluation Metrics in Survival
Analysis
SurvRegCensCov Weibull Regression for a Right-Censored
Endpoint with Interval-Censored Covariate
SurvSparse Survival Analysis with Sparse Longitudinal
Covariates
SurvTrunc Analysis of Doubly Truncated Data
SurveyCC Canonical Correlation for Survey Data
SurveyDefense Survey Defense Tool
SurveyStat Survey Data Cleaning, Weighting and Analysis
SurviMChd High Dimensional Survival Data Analysis with
Markov Chain Monte Carlo
SurvivalClusteringTree
Clustering Analysis Using Survival Tree and
Forest Algorithms
SurvivalTests Survival Tests for One-Way Layout
SveltePlots A Wrapper for a Svelte Custom Web Component
SvyNom Nomograms for Right-Censored Outcomes from
Survey Designs
SwPcIndex Computation of Survey Weighted PC Based
Composite Index
SweepDiscovery Selective Sweep Discovery Tool
SwimmeR Data Import, Cleaning, and Conversions for
Swimming Results
SwissAir Air Quality Data of Switzerland for One Year in
30 Min Resolution
SyScSelection Systematic Scenario Selection for Stress
Testing
SymTS Symmetric Tempered Stable Distributions
SynDI Synthetic Data Integration
SyncMove Subsample Temporal Data to Synchronal Events
and Compute the MCI
SyncRNG A Synchronized Tausworthe RNG for R and Python
SynchWave Synchrosqueezed Wavelet Transform
SynergyLMM Statistical Framework for in Vivo Drug
Combination Studies
Synth Synthetic Control Group Method for Comparative
Case Studies
SynthETIC Synthetic Experience Tracking Insurance Claims
SynthTools Tools and Tests for Experiments with Partially
Synthetic Data Sets
Sysrecon Systematical Metabolic Reconstruction
SystemicR Monitoring Systemic Risk
T2DFitTailor Tailor the Exercise Plans and Visualize the
Outcome for T2D Patients
T2EQ Functions for Applying the T^2-Test for
Equivalence
T2Qv Control Qualitative Variables
T4cluster Tools for Cluster Analysis
T4transport Tools for Computational Optimal Transport
TAD Realize the Trait Abundance Distribution
TAF Transparent Assessment Framework for
Reproducible Research
TAG Transformed Additive Gaussian Processes
TAM Test Analysis Modules
TANDEM A Two-Stage Approach to Maximize
Interpretability of Drug Response Models Based
on Multiple Molecular Data Types
TAQMNGR Manage Tick-by-Tick Transaction Data
TAR Bayesian Modeling of Autoregressive Threshold
Time Series Models
TAShiny 'Text Analyzer Shiny'
TBA Collection of 'shiny' Apps for Tree Breeding
Analysis
TBEST Tree Branches Evaluated Statistically for
Tightness
TBFmultinomial TBF Methodology Extension for Multinomial
Outcomes
TBRDist Rearrangement Distances Between Phylogenetic
Trees
TBox Useful Functions for Programming and Generating
Documents
TCA Tensor Composition Analysis
TCGAretriever Retrieve Genomic and Clinical Data from
CBioPortal Including TCGA Data
TCGAutils TCGA utility functions for data management
TCHazaRds Tropical Cyclone (Hurricane, Typhoon) Spatial
Hazard Modelling
TCIApathfinder Client for the Cancer Imaging Archive REST API
TCIU Spacekime Analytics, Time Complexity and
Inferential Uncertainty
TCRconvertR Convert TCR Gene Names
TCseq Time course sequencing data analysis
TDA Statistical Tools for Topological Data Analysis
TDAkit Toolkit for Topological Data Analysis
TDApplied Machine Learning and Inference for Topological
Data Analysis
TDAstats Pipeline for Topological Data Analysis
TDAvec Vector Summaries of Persistence Diagrams
TDCM The Transition Diagnostic Classification Model
Framework
TDCor Gene Network Inference from Time-Series
Transcriptomic Data
TDIagree Assessment of Agreement using the Total
Deviation Index
TDLM Systematic Comparison of Trip Distribution Laws
and Models
TDPanalysis Granier's Sap Flow Sensors (TDP) Analysis
TDSTNN Time Delay Spatio Temporal Neural Network
TDbook Companion Package for the Book "Data
Integration, Manipulation and Visualization of
Phylogenetic Trees" by Guangchuang Yu (2022,
ISBN:9781032233574)
TDboost A Boosted Tweedie Compound Poisson Model
TELP Social Representation Theory Application: The
Free Evocation of Words Technique
TEQR Target Equivalence Range Design
TExPosition Two-Table ExPosition
TFBSTools Software Package for Transcription Factor
Binding Site (TFBS) Analysis
TFMPvalue Efficient and Accurate P-Value Computation for
Position Weight Matrices
TFORGE Tests for Geophysical Eigenvalues
TFRE A Tuning-Free Robust and Efficient Approach to
High-Dimensional Regression
TFactSR Enrichment Approach to Predict Which
Transcription Factors are Regulated
TFisher Optimal Thresholding Fisher's P-Value
Combination Method
TFunHDDC Clustering of Functional Data via Mixtures of
t-Distributions
TGS Rapid Reconstruction of Time-Varying Gene
Regulatory Networks
TGST Targeted Gold Standard Testing
TH.data TH's Data Archive
THETASVM Time Series Forecasting using THETA-SVM Hybrid
Model
THREC Tree Height Response Calibration for Swedish
Forests
TICM Testing the Validity of the Independent
Component Model Assumption
TIGERr Technical Variation Elimination with Ensemble
Learning Architecture
TIMP Fitting Separable Nonlinear Models in
Spectroscopy and Microscopy
TITAN2 Threshold Indicator Taxa Analysis
TITEgBOIN Time-to-Event Dose-Finding Design for Multiple
Toxicity Grades
TKCat Tailored Knowledge Catalog
TLCAR Computation of Topp-Leone Cauchy Rayleigh
(TLCAR ) distribution's properties
TLIC The LIC for T Distribution Regression Analysis
TLMoments Calculate TL-Moments and Convert Them to
Distribution Parameters
TMB Template Model Builder: A General Random Effect
Tool Inspired by 'ADMB'
TMDb Access to TMDb API
TML Tropical Geometry Tools for Machine Learning
TMTI Too Many, Too Improbable (TMTI) Test Procedures
TNC Temporal Network Centrality (TNC) Measures
TNRS Taxonomic Name Resolution Service
TOC Total Operating Characteristic Curve and ROC
Curve
TOHM Testing One Hypothesis Multiple Times
TORDs Third Order Rotatable Designs (TORDs)
TOSI Two-Directional Simultaneous Inference for
High-Dimensional Models
TOSTER Two One-Sided Tests (TOST) Equivalence Testing
TOU Transformed Ornstein-Uhlenbeck Model for
Adsorption Kinetics
TPAC Tissue-Adjusted Pathway Analysis of Cancer
(TPAC)
TPACData Human Protein Atlas Data for Tissue-Adjusted
Pathway Analysis of Cancer (TPAC)
TPD Methods for Measuring Functional Diversity
Based on Trait Probability Density
TPDDev Tool for Construction of Two-Phase Experimental
Designs
TPEA A Novel Topology-Based Pathway Enrichment
Analysis Approach
TPES Tumor Purity Estimation using SNVs
TPLSr Thresholded Partial Least Squares Model for
Neuroimaging Data
TPXG Two Parameter Xgamma & Poisson Xgamma:
Regression & Distribution Functions
TPmsm Estimation of Transition Probabilities in
Multistate Models
TR8 A Tool for Downloading Functional Traits Data
for Plant Species
TRADER Tree Ring Analysis of Disturbance Events in R
TRAMPR 'TRFLP' Analysis and Matching Package for R
TRD Transmission Ratio Distortion
TREDesigns Ternary Residual Effect Designs
TRES Tensor Regression with Envelope Structure
TRexSelector T-Rex Selector: High-Dimensional Variable
Selection & FDR Control
TSA Time Series Analysis
TSANN Time Series Artificial Neural Network
TSCAN Tools for Single-Cell Analysis
TSCI Tools for Causal Inference with Possibly
Invalid Instrumental Variables
TSCS Time Series Cointegrated System
TSDFGS Training Set Determination for Genomic
Selection
TSDT Treatment-Specific Subgroup Detection Tool
TSE Total Survey Error
TSEAL Time Series Analysis Library
TSEind Total Survey Error (Independent Samples)
TSEntropies Time Series Entropies
TSEtools Manage Data from the Finance Markets
TSEwgt Total Survey Error Under Multiple, Different
Weighting Schemes
TSF Two Stage Forecasting (TSF) for Long Memory
Time Series in Presence of Structural Break
TSGS Trait Specific Gene Selection using SVM and GA
TSGSIS Two Stage-Grouped Sure Independence Screening
TSHRC Two Stage Hazard Rate Comparison
TSLA Tree-Guided Rare Feature Selection and Logic
Aggregation
TSLSTM Long Short Term Memory (LSTM) Model for Time
Series Forecasting
TSLSTMplus Long-Short Term Memory for Time-Series
Forecasting, Enhanced
TSMCP Fast Two Stage Multiple Change Point Detection
TSP Infrastructure for the Traveling Salesperson
Problem
TSPred Functions for Benchmarking Time Series
Prediction
TSQCA DEPRECATED: Threshold Sweep Extensions for
Qualitative Comparative Analysis
TSS.RESTREND Time Series Segmentation of Residual Trends
TSSS Time Series Analysis with State Space Model
TSSVM Time Series Forecasting using SVM Model
TSTutorial Fitting and Predict Time Series Interactive
Laboratory
TSVC Tree-Structured Modelling of Varying
Coefficients
TSdeeplearning Deep Learning Model for Time Series Forecasting
TSdisaggregation High-Dimensional Temporal Disaggregation
TSeriesMMA Multiscale Multifractal Analysis of Time Series
Data
TSrepr Time Series Representations
TSsmoothing Trend Estimation of Univariate and Bivariate
Time Series with Controlled Smoothness
TSstudio Functions for Time Series Analysis and
Forecasting
TTAinterfaceTrendAnalysis
Temporal Trend Analysis Graphical Interface
TTCA Transcript Time Course Analysis
TTR Technical Trading Rules
TTR.PGM Thornley Transport Resistance Plant Growth
Model
TTS Master Curve Estimates Corresponding to
Time-Temperature Superposition
TUFLOWR Helper Functions for 'TUFLOW FV' Models
TUGLab A Laboratory for TU Games
TULIP A Toolbox for Linear Discriminant Analysis with
Penalties
TUWmodel Lumped/Semi-Distributed Hydrological Model for
Education Purposes
TUvalues Tools for Calculating Allocations in Game
Theory using Exact and Approximated Methods
TVMM Multivariate Tests for the Vector of Means
TVMVP Time-Varying Minimum Variance Portfolio
TWW Growth Models
Taba Taba Robust Correlations
Table1Heatmap Table 1 Heatmap
TableContainer Create a Table with Row, Column, and Table
Annotations
TableMonster Table Monster
TableToLongForm Automatically Convert Hierarchical for-Human
Tables to Machine-Readable LongForm Dataframes
TailClassifier Tail Classifier
TailID Detect Sensitive Points in the Tail
TailRank The Tail-Rank Statistic
TangledFeatures Feature Selection in Highly Correlated Spaces
TapeR Flexible Tree Taper Curves Based on
Semiparametric Mixed Models
TapeS Tree Taper Curves and Sorting Based on 'TapeR'
Tariff Replicate Tariff Method for Verbal Autopsy
TauStar Efficient Computation and Testing of the
Bergsma-Dassios Sign Covariance
TaxaNorm Feature-Wise Normalization for Microbiome
Sequencing Data
TaxicabCA Taxicab Correspondence Analysis
TaylorRussell A Taylor-Russell Function for Multiple
Predictors
TcGSA Time-Course Gene Set Analysis
Tcomp Data from the 2010 Tourism Forecasting
Competition
TeXCheckR Parses LaTeX Documents for Errors
TeachHist A Collection of Amended Histograms Designed for
Teaching Statistics
TeachingDemos Demonstrations for Teaching and Learning
TeachingSampling Selection of Samples and Parameter Estimation
in Finite Population
Tejapi API Wrapper for Taiwan Economic Journal Data
Service
TempStable A Collection of Methods to Estimate Parameters
of Different Tempered Stable Distributions
Temporal Parametric Time to Event Analysis
TemporalForest Network-Guided Temporal Forests for Feature
Selection in High-Dimensional Longitudinal Data
TemporalGSSA Outputs Temporal Profile of Molecules from
Stochastic Simulation Algorithm Generated
Datasets
TemporalHazard Temporal Parametric Hazard Modeling
TensorClustering Model-Based Tensor Clustering
TensorMCMC Tensor Regression with Stochastic Low-Rank
Updates
TensorPreAve Rank and Factor Loadings Estimation in Time
Series Tensor Factor Models
TensorTest2D Fitting Second-Order Tensor Data
TernTables Automated Statistical Analysis and Table
Generation for Biomedical Research
Ternary Create Ternary and Holdridge Plots
TesiproV Reliability Analysis Methods for Structural
Engineering
TestAnaAPP A 'shiny' App for Test Analysis and
Visualization
TestCor FWER and FDR Controlling Procedures for
Multiple Correlation Tests
TestDataImputation Missing Item Responses Imputation for Test and
Assessment Data
TestDesign Optimal Test Design Approach to Fixed and
Adaptive Test Construction
TestDimorph Analysis of the Interpopulation Difference in
Degree of Sexual Dimorphism Using Summary
Statistics
TestFunctions Test Functions for Simulation Experiments and
Evaluating Optimization and Emulation
Algorithms
TestGardener Information Analysis for Test and Rating Scale
Data
TestGenerator Integration Unit Tests for
Pharmacoepidemiological Studies
TestIndVars Testing the Independence of Variables for
Specific Covariance Structures
TestNet A Method for Inferring Microbial Networks with
FDR Control
TestScorer GUI for Entering Test Items and Obtaining Raw
and Transformed Scores
TestingSimilarity Bootstrap Test for the Similarity of Dose
Response Curves Concerning the Maximum Absolute
Deviation
TestsSymmetry Tests for Symmetry when the Center of Symmetry
is Unknown
Tex4exams Generating 'Sweave' Code for 'R/exams'
Questions in Mathematics
TexExamRandomizer Personalizes and Randomizes Exams Written in
'LaTeX'
TextMiningGUI Text Mining GUI Interface
ThSQCA Threshold-Sweep QCA
TheOpenAIR Integrate 'OpenAI' Large Language Models into
Your 'R' Workflows
TheSFACE The Subtype Free Average Causal Effect
ThermIndex Calculate Thermal Indexes
ThermalSampleR Calculate Sample Sizes Required for Critical
Thermal Limits Experiments
Thermimage Thermal Image Analysis
TheseusPlot Visualizing Decomposition of Differences in
Rate Metrics
ThinkingGrid Thinking Grid Statistics
ThomasJeffersonUniv Handy Tools for TJU/TJUH Employees
ThreeGroups ML Estimator for Baseline-Placebo-Treatment
(Three-Group) Experiments
ThreeWay Three-Way Component Analysis
ThreeWiseMonkeys The Japanese Pictorial Maxim "See No Evil, Hear
No Evil, Speak No Evil"
Thresher Threshing and Reaping for Principal Components
ThresholdROC Optimum Threshold Estimation
ThresholdROCsurvival Diagnostic Ability Assessment with
Right-Censored Data at a Fixed Time t
ThurMod Thurstonian CFA and Thurstonian IRT Modeling
TiPS Trajectories and Phylogenies Simulator
TideCurves Analysis and Prediction of Tides
TideHarmonics Harmonic Analysis of Tides
TideTables Tide Analysis and Prediction of Predominantly
Semi-Diurnal Tides
Tides Quasi-Periodic Time Series Characteristics
TidyConsultant Tidy Consultant Universe
TidyDensity Functions for Tidy Analysis and Generation of
Random Data
TidyMultiqc Converts 'MultiQC' Reports into Tidy Data
Frames
TidyPanel Universal Messy Panel Data Cleaner
TimeDepFrail Time Dependent Shared Frailty Cox Model
TimeTraits Functional Data Analysis Pipeline, Extracting
Functional Traits from Biological Time-Series
Data
TimeVarConcurrentModel
Concurrent Multivariate Models with
Time-Varying Coefficients
TimeVizPro Dynamic Data Explorer: Visualize and Forecast
with 'TimeVizPro'
Tinflex A Universal Non-Uniform Random Number Generator
TipDatingBeast Using Tip Dates with Phylogenetic Trees in
BEAST
Tivy Toolkit for Investigation and Visualization of
Young Anchovies
TmCalculator Genome-Wide Nucleic Acid Melting Temperature
Profiling and Multi-Omics Integration
Tmisc Turner Miscellaneous
TooManyCellsR An R Wrapper for 'TooManyCells'
ToolsForCoDa Multivariate Tools for Compositional Data
Analysis
Toothnroll Dental Tissues Landmarking Measuring and
Mapping
TopDom An Efficient and Deterministic Method for
Identifying Topological Domains in Genomes
TopKLists Inference, Aggregation and Visualization for
Top-K Ranked Lists
TopKSignal A Convex Optimization Tool for Signal
Reconstruction from Multiple Ranked Lists
TopSisWM Multi-Criteria Method for Decision (TOPSIS)
TopicScore The Topic SCORE Algorithm to Fit Topic Models
TopicTestlet A Topic Testlet Model for Calibrating Testlet
Constructed Responses
TotalCopheneticIndex Quantify the Balance of Phylogenetic Trees
ToxCrit Calculates Safety Stopping Boundaries for a
Single-Arm Trial using Bayes
Tplyr A Traceability Focused Grammar of Clinical Data
Summary
TraMineR Trajectory Miner: a Sequence Analysis Toolkit
TraMineRextras TraMineR Extension
TraceAssist Nonparametric Trace Regression via Sign Series
Representation
TrackReconstruction Reconstruct Animal Tracks from Magnetometer,
Accelerometer, Depth and Optional Speed Data
TrackTrap Model Cumulative Growing Degree-Days for Pest
Monitoring
Trading Trade Objects, Advanced Correlation & Beta
Estimates, Betting Strategies
TrafficBDE Traffic Predictions Using Neural Networks
TrajectoryUtils Single-Cell Trajectory Analysis Utilities
TransHDM High-Dimensional Mediation Analysis via
Transfer Learning
TransModel Fit Linear Transformation Models for Right
Censored Data
TransP Implementation of Transportation Problem
Algorithms
TransProR Analysis and Visualization of Multi-Omics Data
Transform Statistical Transformations
Transition Characterise Transitions in Test Result Status
in Longitudinal Studies
Tratamentos.ad Pacote Para Analise De Experimentos Com
Testemunhas Adicionais
TreatmentPatterns Analyzes Real-World Treatment Patterns of a
Study Population of Interest
TreeBUGS Hierarchical Multinomial Processing Tree
Modeling
TreeDep Air Pollution Removal by Dry Deposition on
Trees
TreeDiagram Tree Diagram
TreeDimensionTest Trajectory Presence and Heterogeneity in
Multivariate Data
TreeDist Calculate and Map Distances Between
Phylogenetic Trees
TreeMineR Tree-Based Scan Statistics
TreeOrderTests Tests for Tree Ordered Alternatives in One-Way
ANOVA
TreeRingShape Recording Tree-Ring Shapes of Tree Disks with
Manual Digitizing and Interpolating Model
TreeSearch Phylogenetic Analysis with Discrete Character
Data
TreeSim Simulating Phylogenetic Trees
TreeSimGM Simulating Phylogenetic Trees under General
Bellman Harris and Lineage Shift Model
TreeSummarizedExperiment
TreeSummarizedExperiment: a S4 Class for Data
with Tree Structures
TreeTools Create, Modify and Analyse Phylogenetic Trees
TrenchR Tools for Microclimate and Biophysical Ecology
TrendInTrend Odds Ratio Estimation and Power Calculation for
the Trend in Trend Model
TrendLSW Wavelet Methods for Analysing Locally
Stationary Time Series
TrendTM Trend of High-Dimensional Time Series Matrix
Estimation
Trendtwosub Two Sample Order Free Trend Nonparametric
Inference
Tri.Hierarchical.IBDs Tri-Hierarchical IBDs (Tri- Hierarchical
Incomplete Block Designs)
TriLLIEM Log-Linear Modelling of Triad Genotype Data
TriMatch Propensity Score Matching of Non-Binary
Treatments
TriadSim Simulating Triad Genomewide Genotypes
TrialEmulation Causal Analysis of Observational Time-to-Event
Data
TrialSimulator Clinical Trial Simulator
TrialSize R Functions for Chapter
3,4,6,7,9,10,11,12,14,15 of Sample Size
Calculation in Clinical Research
TrioSGL Trio Model with a Combination of Lasso and
Group Lasso Regularization
TripleR Social Relation Model (SRM) Analyses for Single
or Multiple Groups
TropFishR Tropical Fisheries Analysis
TroublemakeR Generates Spatial Problems in R for 'AMPL'
TrtCombo.FactorialExp.SR
Generation of Treatment Combination (in
Standard Order) in 2^n Factorial Experiment
TrueSkillThroughTime Skill Estimation Based on a Single Bayesian
Network
TrueWAP True Range-Weighted Average Price ('TrueWAP')
TrumpetPlots Visualization of Genetic Association Studies
TruncExpFam Truncated Exponential Family
TruncatedNormal Truncated Multivariate Normal and Student
Distributions
TruncatedPCQM Density Estimation for Point-Centered Quarter
Method with Truncated Sampling
TrustworthyMLR Stability and Robustness Evaluation for Machine
Learning Models
Ts Calculation of the Surface Temperature (Ts)
from Geospatial Raster Data
TukeyC Conventional Tukey Test
TukeyGH77 Tukey g-&-h Distribution
TunePareto Multi-Objective Parameter Tuning for
Classifiers
TurtleGraphics Turtle Graphics
Tushare Interface to 'Tushare Pro' API
TwoDcDAPSA Calculate TwoDcDAPSA: PROs-Joint Contrast (PJC)
and Swollen–Tender Joints Contrast (STC) Scores
and Quartiles
TwoDiRef Robust Estimation of Conditional 2D Reference
Regions
TwoPhaseCorR Construct Two-Phase Experimental Designs with
Correlated Errors
TwoRegression Develop and Apply Two-Regression Algorithms
TwoSampleTest.HD A Two-Sample Test for the Equality of
Distributions for High-Dimensional Data
TwoStepCLogit Conditional Logistic Regression: A Two-Step
Estimation Method
TwoStepSDFM Estimate a Sparse Mixed Frequency Gaussian
Factor Model Using a Two-Step Procedure
TwoTimeScales Analysis of Event Data with Two Time Scales
TwoWayFEWeights Estimation of the Weights Attached to the
Two-Way Fixed Effects Regressions
TxEffectsSurvival Treatment Effect Inference for Terminal and
Non-Terminal Events under Competing Risks
UAHDataScienceO Educational Outlier Detection Algorithms with
Step-by-Step Tutorials
UAHDataScienceSC Learn Supervised Classification Methods Through
Examples and Code
UAHDataScienceSF Interactive Statistical Learning Functions
UAHDataScienceUC Learn Clustering Techniques Through Examples
and Code
UBCRM Simulate and Conduct Dose-Escalation Phase I
Studies
UBStats Basic Statistics
UBayFS A User-Guided Bayesian Framework for Ensemble
Feature Selection
UCR.ColumnNames Fixes Column Names for Uniform Crime Report
"Offenses Known and Clearance by Arrest"
Datasets
UCSC.utils Low-level utilities to retrieve data from the
UCSC Genome Browser
UCSCXenaShiny Interactive Analysis of UCSC Xena Data
UCSCXenaTools Download and Explore Datasets from UCSC Xena
Data Hubs
UCell Rank-based signature enrichment analysis for
single-cell data
UComp Automatic Univariate Time Series Modelling of
many Kinds
UEI Compute Uniform Error Index
UGarima The Unit-Garima Distribution
UHM Unified Zero-Inflated Hurdle Regression Models
UKFE UK Flood Estimation
UKgrid The UK National Electricity Transmission System
Dataset
UNCOVER Utilising Normalisation Constant Optimisation
via Edge Removal (UNCOVER)
UNPaC Non-Parametric Cluster Significance Testing
with Reference to a Unimodal Null Distribution
UPCM Uncertainty in Partial Credit Models
UPG Efficient Bayesian Algorithms for Binary and
Categorical Data Regression Models
UPSvarApprox Approximate the Variance of the
Horvitz-Thompson Total Estimator
URooTab Tabular Reporting of 'EViews' Unit Root Tests
USA.state.boundaries WGS84 Datum Map of the USA, Including Puerto
Rico and the U.S. Virgin Islands
USAboundaries Historical and Contemporary Boundaries of the
United States of America
USE Uniform Sampling of the Environmental Space
USP U-Statistic Permutation Tests of Independence
for all Data Types
USgas The Demand for Natural Gas in the US
USgrid The Demand and Supply for Electricity in the US
USpopcenters United States Centers of Population (Centroids)
UStatBookABSC A Companion Package to the Book "U-Statistics,
M-Estimation and Resampling"
UVdose Estimate Ambient UV Dose from Location and Date
Info
UWHAM Unbinned Weighted Histogram Analysis Method
(UWHAM)
UdderQuarterInfectionData
Udder Quarter Infection Data
Ultimixt Bayesian Analysis of Location-Scale Mixture
Models using a Weakly Informative Prior
Umatrix Visualization of Structures in High-Dimensional
Data
Umoments Unbiased Central Moment Estimates
Umpire Simulating Realistic Gene Expression and
Clinical Data
UncDecomp Uncertainty Decomposition
UniExactFunTest Uniform Exact Functional Tests for Contingency
Tables
Unico Unified Cross-Omics Deconvolution
Unicode Unicode Data and Utilities
UnifiedDoseFinding Dose-Finding Methods for Non-Binary Outcomes
UniprotR Retrieving Information of Proteins from Uniprot
UnitCircle Check if Roots of a Polynomial Lie Outside the
Unit Circle
UnitMix Detecting Measurement-Unit Errors via Gaussian
Mixture Models
UnitStat Performs Unit Root Test Statistics
UnivRNG Univariate Pseudo-Random Number Generation
UniversalCVI Hard and Soft Cluster Validity Indices
UnplanSimon Methods for Managing Enrollment Deviation in
Simon's Two-Stage Design
UpAndDownPlots Displays Percentage and Absolute Changes
UpDown Detecting Group Disturbances from Longitudinal
Observations
UpSetR A More Scalable Alternative to Venn and Euler
Diagrams for Visualizing Intersecting Sets
Upsilon Another Test of Association for Count Data
UsingR Data Sets, Etc. for the Text "Using R for
Introductory Statistics", Second Edition
V8 Embedded JavaScript and WebAssembly Engine for
R
VALERIE Visualising Splicing at Single-Cell Resolution
VALIDICLUST VALID Inference for Clusters Separation Testing
VAM Variance-Adjusted Mahalanobis
VAR.etp VAR Modelling: Estimation, Testing, and
Prediction
VAR.spec Allows Specifying a Bivariate VAR (Vector
Autoregression) with Desired Spectral
Characteristics
VARSELECTEXPOSURE Variable Selection Methods Including an
Exposure Variable
VARcheck Visual Diagnostic Checks for Vector
Autoregressive Models
VARcpDetectOnline Sequential Change Point Detection for
High-Dimensional VAR Models
VARshrink Shrinkage Estimation Methods for Vector
Autoregressive Models
VARtests Bootstrap Tests for Cointegration and
Autocorrelation in VARs
VBLPCM Variational Bayes Latent Position Cluster Model
for Networks
VBMS Variational Bayesian Algorithm for Multi-Source
Heterogeneous Models
VBV The Generalized Berlin Method for Time Series
Decomposition
VBel Variational Bayes for Fast and Accurate
Empirical Likelihood Inference
VBphenoR Variational Bayes for Latent Patient Phenotypes
in EHR
VBsparsePCA The Variational Bayesian Method for Sparse PCA
VC2copula Extend the 'copula' Package with Families and
Models from 'VineCopula'
VCA Variance Component Analysis
VCBART Fit Varying Coefficient Models with Bayesian
Additive Regression Trees
VDAP Peptide Array Analysis Tools
VDJgermlines Variable, Diversity and Joining Sequences from
Various Species
VDPO Working with and Analyzing Functional Data of
Varying Lengths
VDSM Visualization of Distribution of Selected Model
VDSPCalibration Statistical Methods for Designing and Analyzing
a Calibration Study
VEwaning Vaccine Efficacy Over Time
VEwaningVariant Vaccine Efficacy Over Time - Variant Aware
VFP Variance Function Program
VFS Vegetated Filter Strip and Erosion Model
VGAM Vector Generalized Linear and Additive Models
VGAMdata Data Supporting the 'VGAM' Package
VGAMextra Additions and Extensions of the 'VGAM' Package
VIC5 The Variable Infiltration Capacity (VIC)
Hydrological Model
VICatMix Variational Mixture Models for Clustering
Categorical Data
VIGoR Variational Bayesian Inference for Genome-Wide
Regression
VIM Visualization and Imputation of Missing Values
VIMPS Calculate Variable Importance with Knock Off
Variables
VIMean Variability Independent of Mean
VIProDesign A Comprehensive Tool for Protein Design
VIRF Computation of Volatility Impulse Response
Function of Multivariate Time Series
VLF Frequency Matrix Approach for Assessing Very
Low Frequency Variants in Sequence Records
VLMC Variable Length Markov Chains ('VLMC') Models
VLMCX Variable Length Markov Chain with Exogenous
Covariates
VLTimeCausality Variable-Lag Time Series Causality Inference
Framework
VMDML Variational Mode Decomposition Based Machine
Learning Models
VMDecomp Variational Mode Decomposition
VOSONDash User Interface for Collecting and Analysing
Social Networks
VOWR Vital Operational Waiting Risk for Healthcare
Systems
VPdtw Variable Penalty Dynamic Time Warping
VSOLassoBag Variable Selection Oriented LASSO Bagging
Algorithm
VSURF Variable Selection Using Random Forests
VTShiny Interactive Document for Working with Variance
Analysis
VWPre Tools for Preprocessing Visual World Data
VaRES Computes Value at Risk and Expected Shortfall
for over 100 Parametric Distributions
ValidationExplorer Simulation-Based Tools for Bioacoustic Study
Design
VancouvR Access the 'City of Vancouver' Open Data API
VarED Variance Estimation using Difference-Based
Methods
VarRedOpt A Framework for Variance Reduction
VarReg Semi-Parametric Variance Regression
VarSelLCM Variable Selection for Model-Based Clustering
of Mixed-Type Data Set with Missing Values
VariableScreening High-Dimensional Screening for Semiparametric
Longitudinal Regression
VariableSelection Select Variables for Linear Models
VarianceGamma The Variance Gamma Distribution
VariantAnnotation Annotation of Genetic Variants
VecDep Measuring Copula-Based Dependence Between
Random Vectors
VeccTMVN Multivariate Normal Probabilities using Vecchia
Approximation
VectorCodeR Easily Analyze Your Gait Patterns Using Vector
Coding Technique
VectorForgeML High-Performance Machine Learning Framework
with C++ Acceleration
VectrixDB Lightweight Vector Database with Embedded
Machine Learning Models
VedicDateTime Vedic Calendar System
VegSpecIndex Vegetation and Spectral Indices for
Environmental Assessment
VennDiagram Generate High-Resolution Venn and Euler Plots
VennItem Generate Venn Diagrams with Items Listed in the
Sections
VertexSimilarity Creates Vertex Similarity Matrix for an
Undirected Graph
VertexWiseR Simplified Vertex-Wise Analyses of Whole-Brain
and Subcortical Surface
VeryLargeIntegers Store and Operate with Arbitrarily Large
Integers
VetResearchLMM Linear Mixed Models - An Introduction with
Applications in Veterinary Research
ViSe Visualizing Sensitivity
Vicus Exploiting Local Structures to Improve
Network-Based Analysis of Biological Data
ViewPipeSteps Create View Tabs of Pipe Chains
ViewR Advanced Interactive Data Tables and Data
Explorer
VineCopula Statistical Inference of Vine Copulas
ViralEntropR A Computational Pipeline for Entropy-Informed
Detection of Emerging Viral Variants
ViroReportR Respiratory Viral Infection Forecast Reporting
VirtualPop Simulation of Populations by Sampling
Waiting-Time Distributions
Virusparies Visualize and Process Output from
'VirusHunterGatherer'
VisCollin Visualizing Collinearity Diagnostics
VisCov Visualizing of Distributions of Covariance
Matrices
VisitorCounts Modeling and Forecasting Visitor Counts Using
Social Media
VisualDom Visualize Dominant Variables in Wavelet
Multiple Correlation
Visualize.CRAN.Downloads
Visualize Downloads from 'CRAN' Packages
VisualizeSimon2Stage Visualize Simon's Two-Stage Design
VizModules Flexible, Interactive 'shiny' Modules for
Almost Any Plot
VizTest Optimal Confidence Intervals for Visual Testing
VoronoiBiomedPlot Tesselation Visualization Plots for 2D Data
Voss Generic Voss Algorithm (Random Sequential
Additions)
VoxR Trees Geometry and Morphology from Unstructured
TLS Data
VsusP Variable Selection using Shrinkage Priors
VulnToolkit Analysis of Tidal Datasets
W2CWM2C A Graphical Tool for Wavelet (Cross)
Correlation and Wavelet Multiple (Cross)
Correlation Analysis
W3CMarkupValidator R Interface to W3C Markup Validation Services
W4MRUtils Useful Functions for Harmonized W4M Tool
Development
WA While-Alive Loss Rate for Recurrent Event in
the Presence of Death
WACS Multivariate Weather-State Approach
Conditionally Skew-Normal Generator
WALS Weighted-Average Least Squares Model Averaging
WARDEN Workflows for Health Technology Assessments in
R using Discrete EveNts
WARN Weaning Age Reconstruction with Nitrogen
Isotope Analysis
WASP Wavelet System Prediction
WAnova Welch's Anova from Summary Statistics
WAreg While-Alive Regression for Composite Endpoints
with Cluster-Robust Inference
WBI Wasserstein Bipolarization Index
WCE Weighted Cumulative Exposure Models
WCM Water Cloud Model (WCM) for the Simulation of
Leaf Area Index (LAI) and Soil Moisture (SM)
from Microwave Backscattering
WCRBayesDesign Bayesian Two-Stage Design with Window-Cohort
and Controlled Roll-on for Time-to-Event
Estimand
WCluster Clustering and PCA with Weights, and Data
Nuggets Clustering
WDI World Development Indicators and Other World
Bank Data
WData Statistical Inference for Weighted Data
WEGE A Metric to Rank Locations for Biodiversity
Conservation
WGCNA Weighted Correlation Network Analysis
WH Enhanced Implementation of Whittaker-Henderson
Smoothing
WHORiskCalculator WHO Cardiovascular Disease Risk Calculator
WINS The R WINS Package
WIPF Weighted Iterative Proportional Fitting
WLogit Variable Selection in High-Dimensional Logistic
Regression Models using a Whitening Approach
WLreg Regression Analysis Based on Win Loss Endpoints
WMAP Weighted Meta-Analysis with Pseudo-Populations
WMWssp Wilcoxon-Mann-Whitney Sample Size Planning
WOAkMedoids Whale Optimization Algorithm for K-Medoids
Clustering
WOTPLY Plot Connectivity Between Cells from Different
Time Points
WPKDE Weighted Piecewise Kernel Density Estimation
WQM Wavelet-Based Quantile Mapping for
Postprocessing Numerical Weather Predictions
WR Win Ratio Analysis of Composite Time-to-Event
Outcomes
WRI Wasserstein Regression and Inference
WRS2 A Collection of Robust Statistical Methods
WRSS Water Resources System Simulator
WRTDStidal Weighted Regression for Water Quality
Evaluation in Tidal Waters
WRestimates Sample Size, Power and CI for the Win Ratio
WSCdata A New Four-Arm Within-Study Comparison Data on
Math and Vocabulary Training
WVPlots Common Plots for Analysis
WWGbook Functions and Datasets for WWGbook
WaMaSim Simulate Rehabilitation Strategies for Water
Distribution Systems
WallomicsData Datasets for Multi-Omics Integration in a Plant
Abiotic Stress Context
WarnEpi A Comprehensive Tool for Early Warning in
Infectious Disease
WaterBalanceR Calculate High Resolution Water Balance of
Starch Potatoes
Wats Wrap Around Time Series Graphics
WaveST Wavelet-Based Spatial Time Series Models
WaveSampling Weakly Associated Vectors (WAVE) Sampling
WaveletANN Wavelet ANN Model
WaveletArima Wavelet-ARIMA Model for Time Series Forecasting
WaveletComp Computational Wavelet Analysis
WaveletETS Wavelet Based Error Trend Seasonality Model
WaveletGARCH Fit the Wavelet-GARCH Model to Volatile Time
Series Data
WaveletGBM Wavelet Based Gradient Boosting Method
WaveletKNN Wavelet Based K-Nearest Neighbor Model
WaveletLSTM Wavelet Based LSTM Model
WaveletML Wavelet Decomposition Based Hybrid Machine
Learning Models
WaveletMLbestFL The Best Wavelet Filter-Level for Prepared
Wavelet-Based Models
WaveletRF Wavelet-RF Hybrid Model for Time Series
Forecasting
WaveletSVR Wavelet-SVR Hybrid Model for Time Series
Forecasting
WaverideR Extracting Signals from Wavelet Spectra
WayFindR Computing Graph Structures on WikiPathways
Waypoint Convert, Validate, Format and Print Geographic
Coordinates and Waypoints
Wcompo Semiparametric Proportional Means Regression of
Weighted Composite Endpoint
WeMix Weighted Mixed-Effects Models Using Multilevel
Pseudo Maximum Likelihood Estimation
WeatherSentiment Comprehensive Analysis of Tweet Sentiments and
Weather Data
WebAnalytics Web Server Log Analysis
WebGestaltR Gene Set Analysis Toolkit WebGestaltR
WebPower Basic and Advanced Statistical Power Analysis
WeibullFit Fits and Plots a Dataset to the Weibull
Probability Distribution Function
WeibullModiAMR Fit Modified Weibull-Type Distributions
WeibullR Weibull Analysis for Reliability Engineering
WeibullR.ALT Accelerated Life Testing Using 'WeibullR'
WeightCraft Portfolio Choice: Estimation, Construction, and
Evaluation
WeightIt Weighting for Covariate Balance in
Observational Studies
WeightMyItems An Item Weighting Method for Item Response
Matrices
WeightSVM Subject Weighted Support Vector Machines
WeightedCluster Clustering of Weighted Data
WeightedEnsemble Weighted Ensemble for Hybrid Model
WeightedPortTest Weighted Portmanteau Tests for Time Series
Goodness-of-Fit
WeightedROC Fast, Weighted ROC Curves
WeightedTreemaps Generate and Plot Voronoi or Sunburst Treemaps
from Hierarchical Data
Westerlund Panel Cointegration Tests Based on Westerlund
(2007)
WgtEff Functions for Weighting Effects
WhatIf Software for Evaluating Counterfactuals
WhatsR Parsing, Anonymizing and Visualizing Exported
'WhatsApp' Chat Logs
WhiteLabRt Novel Methods for Reproduction Number
Estimation, Back-Calculation, and Forecasting
WhiteStripe White Matter Normalization for Magnetic
Resonance Images
WienR Derivatives of the First-Passage Time Density
and Cumulative Distribution Function, and
Random Sampling from the (Truncated)
First-Passage Time Distribution
WikipediR A MediaWiki API Wrapper
WinRatio Win Ratio for Prioritized Outcomes and 95%
Confidence Interval
WindCurves Tool to Fit Wind Turbine Power Curves
WoodSimulatR Generate Simulated Sawn Timber Strength Grading
Data
WoodburyMatrix Fast Matrix Operations via the Woodbury Matrix
Identity
WordListsAnalytics Multiple Data Analysis Tools for Property
Listing Tasks
WordOfMouth Estimates Economic Variables for
Word-of-Mouth-Campaigns
WordPools Word Pools Used in Studies of Learning and
Memory
WordR Rendering Word Documents with R Inline Code
WorldFlora Standardize Plant Names According to World
Flora Online Taxonomic Backbone
WorldMapR Worldwide or Coordinates-Based Heat Maps
WormTensor A Clustering Method for Time-Series Whole-Brain
Activity Data of 'C. elegans'
WpProj Linear p-Wasserstein Projections
WrensBookshelf A Collection of Palettes and Some Functions to
Help Use Them
WrightMap IRT Item-Person Map with 'ConQuest' Integration
WriteXLS Cross-Platform Perl Based R Function to Create
Excel 2003 (XLS) and Excel 2007 (XLSX) Files
WtTopsis Weighted Method for Multiple-Criteria Decision
Making
WufooR R Wrapper for the 'Wufoo.com' - The Form
Building Service
XDNUTS Discontinuous Hamiltonian Monte Carlo with
Varying Trajectory Length
XGeoRTR Backend-Neutral Explainable Geometry State and
Operators
XICOR Association Measurement Through Cross Rank
Increments
XKCDdata Get XKCD Comic Data
XLConnect Excel Connector for R
XLS A Modeling Approach that Optimizes Future
Errors in Least Squares
XML Tools for Parsing and Generating XML Within R
and S-Plus
XML2R Easier XML Data Collection
XNomial Exact Goodness-of-Fit Test for Multinomial Data
with Fixed Probabilities
XOMultinom Exact Distributions of Some Functions of the
Ordered Multinomial Counts
XR A Structure for Interfaces from R
XRSCC Statistical Quality Control Simulation
XSRecencyX HIV Incidence Estimation using Recency Testing
Data with Population Adjustment
XVector Foundation of external vector representation
and manipulation in Bioconductor
XYomics Analysis of Sex Differences in Omics Data for
Complex Diseases
Xcertainty Estimating Lengths and Uncertainty from
Photogrammetric Imagery
XiMpLe A Simple XML Tree Parser and Generator
Xplortext Statistical Analysis of Textual Data
YEAB Analyze Data from Analysis of Behavior
Experiments
YPInterimTesting Interim Monitoring Using Adaptively Weighted
Log-Rank Test in Clinical Trials
YPmodel The Short-Term and Long-Term Hazard Ratio Model
for Survival Data
YPmodelPhreg The Short-Term and Long-Term Hazard Ratio Model
with Proportional Adjustment
YTAnalytics Wrapper for 'YouTube Analytics' API
YaleToolkit Data Exploration Tools from Yale University
YangHuiMagic A Generalization of Yang Hui's Magic Squares
YatchewTest Yatchew (1997), De Chaisemartin &
D'Haultfoeuille (2024) Linearity Test
YatesAlgo.FactorialExp.SR
Yates' Algorithm in 2^n Factorial Experiment
YieldCurve Modelling and Estimation of the Yield Curve
Ymisc Miscellaneous Functions
Z10 Simple Ecological Statistics from the NEON
Network
ZEP Procedures Related to the Zadeh's Extension
Principle for Fuzzy Data
ZIBR A Zero-Inflated Beta Random Effect Model
ZIDW Zero-Inflated Discrete Weibull Models
ZIHINAR1 Zero-Inflated and Hurdle INAR(1) Models
ZIM Zero-Inflated Models for Count Time Series with
Excess Zeros
ZIM4rv Gene‐based Association Tests of Zero‐inflated
Count Phenotype for Rare Variants
ZINAR1 Simulates ZINAR(1) Model and Estimates Its
Parameters Under Frequentist Approach
ZINARp Simulate INAR/ZINAR(p) Models and Estimate Its
Parameters
ZIPBayes Bayesian Methods in the Analysis of
Zero-Inflated Poisson Model
ZIPFA Zero Inflated Poisson Factor Analysis
ZIPG Zero-Inflated Poisson-Gamma Regression
ZIprop Permutations Tests and Performance Indicator
for Zero-Inflated Proportions Response
ZLAvian Zipf's Law of Abbreviation in Animal
Vocalisations
ZRA Dynamic Plots for Time Series Forecasting
ZVCV Zero-Variance Control Variates
ZeroOneDists One Zero Statistical Distributions
ZetaSuite Analyze High-Dimensional High-Throughput
Dataset and Quality Control Single-Cell RNA-Seq
ZonationR Interface to 'Zonation' for Reproducible
Prioritization Workflows
ZooID Load, Segment and Classify Zooplankton Images
Zseq Integer Sequence Generator
a11yShiny Accessibility Enhancements to Popular R Shiny
Functions
a4Core Automated Affymetrix Array Analysis Core
Package
a5R 'A5' Discrete Global Grid System
aIc Testing for Compositional Pathologies in
Datasets
aLBI Estimating Length-Based Indicators for Fish
Stock
aMNLFA Automated Moderated Nonlinear Factor Analysis
Using 'M-plus'
aNCA (Pre-)Clinical NCA in a Dynamic Shiny App
aPCoA Covariate Adjusted PCoA Plot
aRD Adjusted Risk Differences via Specifically
Penalized Likelihood
aRpsDCA Arps Decline Curve Analysis in R
aRtsy Generative Art with 'ggplot2'
aRxiv Interface to the arXiv API
aSPU Adaptive Sum of Powered Score Test
aTSA Alternative Time Series Analysis
aVirtualTwins Adaptation of Virtual Twins Method from Jared
Foster
aae.pop Flexible Population Dynamics Simulations
aamatch Artless Automatic or Artful Multivariate
Matching for Observational Studies
abasequence Coding 'ABA' Patterns for Sequence Data
abba Batch Execution of R Programs on 'Kubernetes',
'SLURM', and 'Posit Workbench'
abbreviate Readable String Abbreviation
abc Tools for Approximate Bayesian Computation
(ABC)
abc.data Data Only: Tools for Approximate Bayesian
Computation (ABC)
abcel Empirical Likelihood-Based Approximate Bayesian
Computation
abclass Angle-Based Classification
abcrf Approximate Bayesian Computation via Random
Forests
abcrlda Asymptotically Bias-Corrected Regularized
Linear Discriminant Analysis
abctools Tools for ABC Analyses
abd The Analysis of Biological Data
abdiv Alpha and Beta Diversity Measures
abe Augmented Backward Elimination
aberrance Detect Aberrant Behavior in Test Data
abess Fast Best Subset Selection
abglasso Adaptive Bayesian Graphical Lasso
abima Adaptive Bootstrap Inference for Mediation
Analysis with Enhanced Statistical Power
abind Combine Multidimensional Arrays
abjData Databases Used Routinely by the Brazilian
Jurimetrics Association
abjutils Useful Tools for Jurimetrical Analysis Used by
the Brazilian Jurimetrics Association
ablasso Arellano-Bond LASSO Estimator for Dynamic
Linear Panel Models
abms Augmented Bayesian Model Selection for
Regression Models
abn Modelling Multivariate Data with Additive
Bayesian Networks
abodOutlier Angle-Based Outlier Detection
abseil 'C++' Header Files from 'Abseil'
absorber Variable Selection in Nonparametric Models
using B-Splines
abstr R Interface to the A/B Street Transport System
Simulation Software
abstractr An R-Shiny Application for Creating Visual
Abstracts
abtest Bayesian A/B Testing
abundant High-Dimensional Principal Fitted Components
and Abundant Regression
abwm Ansari-Bradley Test with Arbitrarily Missing
Data
academictwitteR Access the Twitter Academic Research Product
Track V2 API Endpoint
acc Exploring Accelerometer Data
accSDA Accelerated Sparse Discriminant Analysis
acca A Canonical Correlation Analysis with
Inferential Guaranties
accbaseballr ACC Baseball Datasets with Advanced Sabermetric
Metrics
accelEE Predict Energy Expenditure from Accelerometer
Data
accelmissing Missing Value Imputation for Accelerometer Data
accept The Acute COPD Exacerbation Prediction Tool
(ACCEPT)
accessibility Transport Accessibility Measures
accessr Command Line Tools to Produce Accessible
Documents using 'R Markdown'
accessrmd Improving the Accessibility of 'rmarkdown'
Documents
accrual Bayesian Accrual Prediction
accrualPlot Accrual Plots and Predictions for Clinical
Trials
accucor Natural Abundance Correction of Mass
Spectrometer Data
accumulate Split-Apply-Combine with Dynamic Groups
acdcR Agro-Climatic Data by County
acdcquery Query the Attentional Control Data Collection
or the Truth Effect Database
ace2fastq ACE File to FASTQ Converter
aceEditor The 'Ace' Editor as a HTML Widget
acebayes Optimal Bayesian Experimental Design using the
ACE Algorithm
acepack ACE and AVAS for Selecting Multiple Regression
Transformations
acfMPeriod Robust Estimation of the ACF from the
M-Periodogram
achieveGap Modeling Achievement Gap Trajectories with
Hierarchical Penalized Splines
acid Analysing Conditional Income Distributions
acled.api Automated Retrieval of ACLED Conflict Event
Data
acledR Manipulate ACLED Data
aclhs Autocorrelated Conditioned Latin Hypercube
Sampling
acmgscaler Variant Effect Calibration to ACMG/AMP Evidence
Strength
acnr Annotated Copy-Number Regions
acoRn Exclusion-Based Parentage Assignment Using
Multilocus Genotype Data
acopula Modelling Dependence with Multivariate Archimax
(or any User-Defined Continuous) Copulas
acro A Tool for Semi-Automating the Statistical
Disclosure Control of Research Outputs
acroname Engine for Acronyms and Initialisms
acsmoe Propagate Uncertainty for ACS Tabular Estimates
acss Algorithmic Complexity for Short Strings
acss.data Data Only: Algorithmic Complexity of Short
Strings (Computed via Coding Theorem Method)
act Aligned Corpus Toolkit
actLifer Creating Actuarial Life Tables
actel Acoustic Telemetry Data Analysis
actfts Autocorrelation Tools Featured for Time Series
actigraph.sleepr Detect Periods of Sleep and Non-Wear in
'ActiGraph' Data
actilifecounts Generate Activity Counts from Raw Accelerometer
Data
activAnalyzer A 'Shiny' App to Analyze Accelerometer-Measured
Daily Physical Behavior Data
activPAL Advanced Processing and Chart Generation from
activPAL Events Files
activatr Utilities for Parsing and Plotting Activities
activity Animal Activity Statistics
activityCounts Generate ActiLife Counts
actogrammr Read in Activity Data and Plot Actograms
actuaRE Handling Single-Level and Hierarchically
Structured Risk Factors using Credibility and
Random Effects Models
actuar Actuarial Functions and Heavy Tailed
Distributions
actuary Actuarial Functions and Utilities
actuaryr Develop Actuarial Models
actxps Create Actuarial Experience Studies: Prepare
Data, Summarize Results, and Create Reports
acumos 'Acumos' R Interface
ada The R Package Ada for Stochastic Boosting
adaR A Fast 'WHATWG' Compliant URL Parser
adabag Applies Multiclass AdaBoost.M1, SAMME and
Bagging
adace Estimator of the Adherer Average Causal Effect
adagio Discrete and Global Optimization Routines
adamethods Archetypoid Algorithms and Anomaly Detection
adana Adaptive Nature-Inspired Algorithms for Hybrid
Genetic Optimization
adaplots Ada-Plot and Uda-Plot for Assessing
Distributional Attributes and Normality
adapt3 Adaptive Dynamics and Community Matrix Model
Projections
adapt4pv Adaptive Approaches for Signal Detection in
Pharmacovigilance
adaptDiag Bayesian Adaptive Designs for Diagnostic Trials
adaptIVPT Adaptive Bioequivalence Design for In-Vitro
Permeation Tests
adaptMCMC Implementation of a Generic Adaptive Monte
Carlo Markov Chain Sampler
adaptTest Adaptive Two-Stage Tests
adaptalint Check Code Style Painlessly
adaptiveGPCA Adaptive Generalized PCA
adaptivetau Tau-Leaping Stochastic Simulation
adaptr Adaptive Trial Simulator
adaptsmoFMRI Adaptive Smoothing of FMRI Data
adas.utils Design of Experiments and Factorial Plans
Utilities
adass Adaptive Smoothing Spline (AdaSS) Estimator for
the Function-on-Function Linear Regression
adbcdrivermanager 'Arrow' Database Connectivity ('ADBC') Driver
Manager
adbcpostgresql 'Arrow' Database Connectivity ('ADBC')
'PostgreSQL' Driver
adbcsqlite 'Arrow' Database Connectivity ('ADBC') 'SQLite'
Driver
adbi 'DBI' Compliant Database Access Using 'ADBC'
adc Calculate Antecedent Discharge Conditions
add2ggplot Add to 'ggplot2'
addhaz Binomial and Multinomial Additive Hazard Models
addhazard Fit Additive Hazards Models for Survival
Analysis
addinsJoaoMelo Addins Made of Joao Melo
addinsOutline 'RStudio' Addins for Show Outline of a R
Markdown/'LaTeX' Project
addinslist Discover and Install Useful RStudio Addins
additive Bindings for Additive TidyModels
additivityTests Additivity Tests in the Two Way Anova with
Single Sub-Class Numbers
addreg Additive Regression for Discrete Data
ade4 Analysis of Ecological Data: Exploratory and
Euclidean Methods in Environmental Sciences
ade4TkGUI 'ade4' Tcl/Tk Graphical User Interface
adea Alternate DEA Package
adegenet Exploratory Analysis of Genetic and Genomic
Data
adegraphics An S4 Lattice-Based Package for the
Representation of Multivariate Data
adehabitatHR Home Range Estimation
adehabitatHS Analysis of Habitat Selection by Animals
adehabitatLT Analysis of Animal Movements
adehabitatMA Tools to Deal with Raster Maps
adelie Group Lasso and Elastic Net Solver for
Generalized Linear Models
adephylo Exploratory Analyses for the Phylogenetic
Comparative Method
adepro A 'shiny' Application for the
(Audio-)Visualization of Adverse Event Profiles
adeptdata Accelerometry Data Sets
adespatial Multivariate Multiscale Spatial Analysis
adestr Estimation in Optimal Adaptive Two-Stage
Designs
adfExplorer Access and Manipulate Amiga Disk Files
adformR Get Adform Ads Data via the 'Windsor.ai' API
adheRenceRX Assess Medication Adherence from Pharmaceutical
Claims Data
adimpro Adaptive Smoothing of Digital Images
adiv Analysis of Diversity
adj Lightweight Adjacency Lists
adjROC Computing Sensitivity at a Fix Value of
Specificity and Vice Versa as Well as Bootstrap
Metrics for ROC Curves
adjSURVCI Parameter and Adjusted Probability Estimation
for Right-Censored Data
adjclust Adjacency-Constrained Clustering of a
Block-Diagonal Similarity Matrix
adjoin Constructing Adjacency Matrices Based on
Spatial and Feature Similarity
adjustedCurves Confounder-Adjusted Survival Curves and
Cumulative Incidence Functions
adjustedcranlogs Remove Automated and Repeated Downloads from
'RStudio' 'CRAN' Download Logs
adjustr Stan Model Adjustments and Sensitivity Analyses
using Importance Sampling
adklakedata Adirondack Long-Term Lake Data
adlift An Adaptive Lifting Scheme Algorithm
admiral ADaM in R Asset Library
admiral.test Test Data for the 'admiral' Package
admiraldev Utility Functions and Development Tools for the
Admiral Package Family
admiralmetabolic Metabolism Extension Package for ADaM in 'R'
Asset Library
admiralneuro Neuroscience Extension Package for ADaM in 'R'
Asset Library
admiralonco Oncology Extension Package for ADaM in 'R'
Asset Library
admiralophtha ADaM in R Asset Library - Ophthalmology
admiralpeds Pediatrics Extension Package for ADaM in 'R'
Asset Library
admiralvaccine Vaccine Extension Package for ADaM in 'R' Asset
Library
admisc Adrian Dusa's Miscellaneous
admix Package Admix for Admixture (aka Contamination)
Models
admixr An Interface for Running 'ADMIXTOOLS' Analyses
admixr2 Aggregate Data Modelling
admmDensestSubmatrix Alternating Direction Method of Multipliers to
Solve Dense Dubmatrix Problem
admtools Estimate and Manipulate Age-Depth Models
adnuts No-U-Turn MCMC Sampling for 'ADMB' Models
adobeanalyticsr R Client for 'Adobe Analytics' API 2.0
adoptr Adaptive Optimal Two-Stage Designs
adplots Ad-Plot and Ud-Plot for Visualizing
Distributional Properties and Normality
adproclus Additive Profile Clustering Algorithms
adpss Design and Analysis of Locally or Globally
Efficient Adaptive Designs
adrftools Estimating, Visualizing, and Testing Average
Dose-Response Functions
ads Spatial Point Patterns Analysis
adsDataHubR Google Ads Data Hub API Client
adsasi Adaptive Sample Size Simulator
adsoRptionCMF Classical Model Fitting of Adsorption Isotherms
adsoRptionCV Cross-Validation Methods for Adsorption
Isotherm Models
adsoRptionMCMC Bayesian Estimation of Adsorption Isotherms via
MCMC
adventr Interactive R Tutorials to Accompany Field
(2016), "An Adventure in Statistics"
adverbial Enhanced Adverbial Functions
adw Angular Distance Weighting Interpolation
adwave Wavelet Analysis of Genomic Data from Admixed
Populations
aebdata Access Data from the Atlas do Estado Brasileiro
aeddo Automated and Early Detection of Disease
Outbreaks
aedl Almost-Exact Inference for the
DerSimonian-Laird Test Statistic
aedseo Automated and Early Detection of Seasonal
Epidemic Onset and Burden Levels
aelab Data Processing for Aquatic Ecology
aemo Download Australian Energy Market Operator Data
aesopR Tools for Text Analysis of Aesop's Fables
afc Generalized Discrimination Score
afcharts Produce Charts Following UK Government Analysis
Function Guidance
afcolours Government Analysis Function Recommended
Accessible Colour Palette
afdx Diagnosis Performance Using Attributable
Fraction
afex Analysis of Factorial Experiments
affiner A Finer Way to Render 3D Illustrated Objects in
'grid' Using Affine Transformations
affinity Raster Georeferencing, Grid Affine Transforms,
Cell Abstraction
affinitymatrix Estimation of Affinity Matrix
affluenceIndex Affluence (Richness) Indices
affxparser Affymetrix File Parsing SDK
affy Methods for Affymetrix Oligonucleotide Arrays
affyPLM Methods for fitting probe-level models
affyio Tools for parsing Affymetrix data files
afmToolkit Functions for Atomic Force Microscope
Force-Distance Curves Analysis
afmpar Check Validity of Greek AFM and PA Numbers
afpt Tools for Modelling of Animal Flight
Performance
africamonitor Africa Macroeconomic Monitor Database API
aftPenCDA Estimating Penalized AFT Models via Coordinate
Descent
aftR2 R-Squared Measure under Accelerated Failure
Time (AFT) Models
aftables Create Spreadsheet Publications Following Best
Practice
aftgee Accelerated Failure Time Model with Generalized
Estimating Equations
afthd Accelerated Failure Time for High Dimensional
Data with MCMC
aftsem Semiparametric Accelerated Failure Time Model
afttest Model Diagnostics for Accelerated Failure Time
Models
ag5Tools Toolbox for Downloading and Extracting
Copernicus AgERA5 Data
agRee Various Methods for Measuring Agreement
agcounts Calculate 'ActiGraph' Counts from Accelerometer
Data
ageg Age Grouping Functions
agena.ai R Wrapper for 'agena.ai' API
ageutils Collection of Functions for Working with Age
Intervals
agfh Agnostic Fay-Herriot Model for Small Area
Statistics
aggTrees Aggregation Trees
agghoo Aggregated Hold-Out Cross Validation
aggreCAT Mathematically Aggregating Expert Judgments
aggregation p-Value Aggregation Methods
aggutils Utilities for Aggregating Probabilistic
Forecasts
aghq Adaptive Gauss Hermite Quadrature for Bayesian
Inference
aglm Accurate Generalized Linear Model
agop Aggregation Operators and Preordered Sets
agpower Recurrent Event Analysis Planning for Robust
Andersen-Gill Model
agregR Bayesian State-Space Aggregation of Brazilian
Presidential Polls
agriDQ Data Quality Checks and Statistical Assumption
Testing for Agricultural Experiments
agriReg Linear and Nonlinear Regression for
Agricultural Data
agriTutorial Tutorial Analysis of Some Agricultural
Experiments
agricolae Statistical Procedures for Agricultural
Research
agricolaeplotr Visualization of Design of Experiments from the
'agricolae' Package
agridat Agricultural Datasets
agrifeature Agriculture Image Feature
agriutilities Utilities for Data Analysis in Agriculture
agriwater Evapotranspiration and Energy Fluxes Spatial
Analysis
agrmt Calculate Concentration and Dispersion in
Ordered Rating Scales
agrobox Data Visualization and Statistical Tools for
Agroindustrial Experiments
agrostab Stability Analysis for Agricultural Research
ags Crosswalk Municipality and District Statistics
in Germany
agua 'tidymodels' Integration with 'h2o'
agvgd An R Implementation of the 'Align-GVGD' Method
ahaz Regularization for Semiparametric Additive
Hazards Regression
ahnr An Implementation of the Artificial Hydrocarbon
Networks
ahocorasick Fast Multi-Pattern String Matching with the
'Aho-Corasick' Algorithm
ahptopsis2n Hybrid Method for Multiple Criteria
Decision-Making (MCDM)
ai Build, Predict and Analyse Artificial
Intelligence Models
aiDIF Differential Item Functioning for AI-Scored
Assessments
aiRly R Wrapper for 'Airly' API
aiRthermo Atmospheric Thermodynamics and Visualization
aieconindex Access the 'Anthropic Economic Index' Dataset
aifeducation Artificial Intelligence for Education
aihuman Experimental Evaluation of Algorithm-Assisted
Human Decision-Making
aimPlot Create Pie Like Plot for Completeness
aimsir17 Irish Weather Observing Stations Hourly Records
for 2017
aion Archaeological Time Series
air AI Assistant to Write and Understand R Code
airGR Suite of GR Hydrological Models for
Precipitation-Runoff Modelling
airGRdatasets Hydro-Meteorological Catchments Datasets for
the 'airGR' Packages
airGRdatassim Ensemble-Based Data Assimilation with GR
Hydrological Models
airGRiwrm 'airGR' Integrated Water Resource Management
airGRteaching Teaching Hydrological Modelling with the GR
Rainfall-Runoff Models ('Shiny' Interface
Included)
aire.zmvm Download Mexico City Pollution, Wind, and
Temperature Data
airnow Retrieve 'AirNow' Air Quality Observations and
Forecasts
airportr Convenience Tools for Working with Airport Data
airports Data on Airports
airqualityES Air Quality Measurements in Spain from 2011 to
2018
airr AIRR Data Representation Reference Library
airship Visualization of Simulated Datasets with
Multiple Simulation Input Dimensions
airt Evaluation of Algorithm Collections Using Item
Response Theory
aisdk Unified Interface for AI Model Providers
aisdk.providers Additional Model Provider Adapters for the
'aisdk' Toolkit
aisoph Additive Isotonic Proportional Hazards Model
ajv Another JSON Schema Validator
aka Define Aliases for R Expressions
akc Automatic Knowledge Classification
akiFlagger Flags Acute Kidney Injury (AKI)
akima Interpolation of Irregularly and Regularly
Spaced Data
akin Functional Utilities for Data Processing
akmbiclust Alternating K-Means Biclustering
alabama Constrained Nonlinear Optimization
alabaster.base Save Bioconductor Objects to File
alabaster.matrix Load and Save Artifacts from File
alabaster.ranges Load and Save Ranges-related Artifacts from
File
alabaster.sce Load and Save SingleCellExperiment from File
alabaster.schemas Schemas for the Alabaster Framework
alabaster.se Load and Save SummarizedExperiments from File
alarmdata Download, Merge, and Process Redistricting Data
albatross PARAFAC Analysis of Fluorescence
Excitation-Emission Matrices
albersdown Minimalist Theme and Vignette Kit for 'pkgdown'
and R Markdown
albopictus Age-Structured Population Dynamics Model
alcoholSurv Light Daily Alcohol and Longevity
alcyon Spatial Network Analysis
ald The Asymmetric Laplace Distribution
aldvmm Adjusted Limited Dependent Variable Mixture
Models
ale Interpretable Machine Learning and Statistical
Inference with Accumulated Local Effects (ALE)
alfr Connectivity to 'Alfresco' Content Management
Repositories
alfred Downloading Time Series from ALFRED Database
for Various Vintages
algaeClassify Tools to Query the 'Algaebase' Online Database,
Standardize Phytoplankton Taxonomic Data, and
Perform Functional Group Classifications
algebraic.dist Algebra over Probability Distributions
algebraic.mle Algebraic Maximum Likelihood Estimators
algo Implement an Address Search Auto Completion
Menu on 'Shiny' Text Inputs Using the 'Algolia
Places' 'Javascript' Library
algorithmia Allows you to Easily Interact with the
Algorithmia Platform
alien Estimate Invasive and Alien Species (IAS)
Introduction Rates
align A Modified DTW Algorithm for Stratigraphic Time
Series Alignment
alkahest Pre-Processing XY Data from Experimental
Methods
allMT Acute Lymphoblastic Leukemia Maintenance
Therapy Analysis
allcontributors Acknowledge all Contributors to a Project
alleHap Allele Imputation and Haplotype Reconstruction
from Pedigree Databases
allelematch Identifying Unique Multilocus Genotypes where
Genotyping Error and Missing Data may be
Present
allestimates Effect Estimates from All Models
allocation Exact Optimal Allocation Algorithms for
Stratified Sampling
allofus Interface for 'All of Us' Researcher Workbench
allometry Examples of Datasets on Allometry
allomr Removing Allometric Effects of Body Size in
Morphological Analysis
alluvial Alluvial Diagrams
almanac Tools for Working with Recurrence Rules
alone Datasets from the Survival TV Series Alone
alookr Model Classifier for Binary Classification
aloom All Leave-One-Out Models
alpaca Fit GLM's with High-Dimensional k-Way Fixed
Effects
alpha.correction.bh Benjamini-Hochberg Alpha Correction
alphaN Set Alpha Based on Sample Size Using Bayes
Factors
alphaOutlier Obtain Alpha-Outlier Regions for Well-Known
Probability Distributions
alphabetr Algorithms for High-Throughput Sequencing of
Antigen-Specific T Cells
alphahull Generalization of the Convex Hull of a Sample
of Points in the Plane
alphashape3d Implementation of the 3D Alpha-Shape for the
Reconstruction of 3D Sets from a Point Cloud
alphastable Inference for Stable Distribution
alphavantagepf Comprehensive R Wrapper for 'Alphavantage
Financial Data' API
alphavantager Lightweight Interface to the Alpha Vantage API
alpmixBayes Bayesian Estimation for Alpha-Mixture Survival
Models
alqrfe Adaptive Lasso Quantile Regression with Fixed
Effects
alr4 Data to Accompany Applied Linear Regression 4th
Edition
alsi Aggregated Latent Space Index for Binary,
Ordinal, and Continuous Data
altR2 Alternative Estimators to Adjusted R-Squared
altadata API Wrapper for Altadata.io
altair Interface to 'Altair'
altdoc Package Documentation Websites with 'Quarto',
'Docsify', 'Docute', or 'MkDocs'
alternativeROC Alternative and Fast ROC Analysis
altfuelr Provides an Interface to the NREL Alternate
Fuels Locator
altmeta Alternative Meta-Analysis Methods
amVennDiagram5 Interactive Venn Diagrams
amadeus Accessing and Analyzing Large-Scale
Environmental Data
amanpg Alternating Manifold Proximal Gradient Method
for Sparse PCA
amap Another Multidimensional Analysis Package
amapGeocode An Interface to the 'AutoNavi Maps' API
Geocoding Services
amapro Thin Wrapper for Mapping Library
'AMap'('Gaode')
amazonadsR Get Amazon Ads Data via the 'Windsor.ai' API
amazons3R Get Amazon S3 Data via the 'Windsor.ai' API
amazonspR Get Amazon Sp Data via the 'Windsor.ai' API
ambiR Calculate AZTI’s Marine Biotic Index
ambient A Generator of Multidimensional Noise
ambiorix Web Framework Inspired by 'Express.js'
ambit Simulation and Estimation of Ambit Processes
amelie Anomaly Detection with Normal Probability
Functions
amen Additive and Multiplicative Effects Models for
Networks and Relational Data
ameras Analyze Multiple Exposure Realizations in
Association Studies
amerika American Politics-Inspired Color Palette
Generator
ami Checks for Various Computing Environments
ammiBayes Bayesian Ammi Model for Continuous Data with or
without Additive and Dominance Effect
amp Statistical Test for the Multivariate Point
Null Hypotheses
amp.dm Data Management Tools for Pharmacometrics
amp.sim Flexible Simulation Utilities for
Pharmacometric Modeling
ampd An Algorithm for Automatic Peak Detection in
Noisy Periodic and Quasi-Periodic Signals
ampir Predict Antimicrobial Peptides
amregtest Runs Allelematch Regression Tests
amsSim Adaptive Multilevel Splitting for Option
Simulation and Pricing
amscorer Clinical Scores Calculator for Healthcare
amt Animal Movement Tools
anMC Compute High Dimensional Orthant Probabilities
anabel Analysis of Binding Events + l
anacor Simple and Canonical Correspondence Analysis
analogsea Interface to 'DigitalOcean'
analogue Analogue and Weighted Averaging Methods for
Palaeoecology
analyzer Data Analysis and Automated R Notebook
Generation
ananke Quantitative Chronology in Archaeology
and Construct Natural-Language Lists with
Internationalization
andorR Optimisation of the Analysis of AND-OR Decision
Trees
andrews Various Andrews Curves
anesrake ANES Raking Implementation
angstromATE Imports Log Files from Angstrom Engineering
Thermal Evaporator
angstroms Tools for 'ROMS' the Regional Ocean Modeling
System
aniDom Inferring Dominance Hierarchies and Estimating
Uncertainty
aniSNA Statistical Network Analysis of Animal Social
Networks
anim.plots Simple Animated Plots for R
animate A Web-Based Graphics Device for Animated
Visualisations
animation A Gallery of Animations in Statistics and
Utilities to Create Animations
animbook Visualizing Changes in Performance Measures and
Demographic Affiliations using Animation
animejs R Bindings to the 'Anime.js' Animation Library
animint2 Animated Interactive Grammar of Graphics
animl A Collection of ML Tools for Species Detection
and Classification in Camera Trap Images and
Videos
anipaths Animation of Multiple Trajectories with
Uncertainty
aniview Animate Shiny and R Markdown Content when it
Comes into View
ankiR Read and Analyze 'Anki' Flashcard Databases
annaffy Annotation tools for Affymetrix biological
metadata
anndata 'anndata' for R
annmatrix Annotated Matrix: Matrices with Persistent Row
and Column Annotations
annotate Annotation for microarrays
annotater Annotate Package Load Calls
annotator Image Annotation and Polygon Outlining using
Free Drawing
anocva A Non-Parametric Statistical Test to Compare
Clustering Structures
anoint Analysis of Interactions
anomalize Tidy Anomaly Detection
anomaly Detecting Anomalies in Data
anominate Alpha-NOMINATE Ideal Point Estimator
anomo Analysis of Moderation, Statistical Power, and
Optimal Design for Studies Detecting Difference
and Equivalence
anovapowersim Simple Power Simulations for ANOVAs
anovir Analysis of Virulence
anscombiser Create Datasets with Identical Summary
Statistics
antaresEditObject Edit an 'Antares' Simulation
antaresProcessing 'Antares' Results Processing
antaresRead Import, Manipulate and Explore the Results of
an 'Antares' Simulation
antaresViz Antares Visualizations
antedep Antedependence Models for Longitudinal Data
anthro Computation of the WHO Child Growth Standards
anthroplus Computation of the WHO 2007 References for
School-Age Children and Adolescents (5 to 19
Years)
anticlust Subset Partitioning via Anticlustering
antitrust Tools for Antitrust Practitioners
antiword Extract Text from Microsoft Word Documents
anyLib Install and Load Any Package from CRAN,
Bioconductor or Github
anybadger Create Custom Pipeline Badges
anyflights Query 'nycflights13'-Like Air Travel Data for
Given Years and Airports
anytime Anything to 'POSIXct' or 'Date' Converter
ao Alternating Optimization
aod Analysis of Overdispersed Data
aods3 Analysis of Overdispersed Data using S3 Methods
aoos Another Object Orientation System
aopdata Data from the 'Access to Opportunities Project
(AOP)'
aoristic Generates Aoristic Probability Distributions
aorsf Accelerated Oblique Random Forests
aos Animate on Scroll Library for 'shiny'
apa Format Outputs of Statistical Tests According
to APA Guidelines
apa7 Facilitate Writing Documents in American
Psychological Association Style, Seventh
Edition
apaTables Create American Psychological Association (APA)
Style Tables
apaText Create R Markdown Text for Results in the Style
of the American Psychological Association (APA)
apache.sedona R Interface for Apache Sedona
apathe American Psychological Association Thesis
Templates for R Markdown
apca Advanced Principal Component Analysis
apcf Adapted Pair Correlation Function
apcluster Affinity Propagation Clustering
apdesign An Implementation of the Additive Polynomial
Design Matrix
ape Analyses of Phylogenetics and Evolution
apeglm Approximate posterior estimation for GLM
coefficients
apercu Quick Look at your Data
apex Phylogenetic Methods for Multiple Gene Data
apexcharter Create Interactive Chart with the JavaScript
'ApexCharts' Library
aphid Analysis with Profile Hidden Markov Models
aphylo Statistical Inference and Prediction of
Annotations in Phylogenetic Trees
api2lm Functions and Data Sets for the Book "A
Progressive Introduction to Linear Models"
apisensr Interface to 'episensr' for Sensitivity
Analysis of Epidemiological Results
aplms Additive Partial Linear Models with Symmetric
Autoregressive Errors
aplore3 Datasets from Hosmer, Lemeshow and Sturdivant,
"Applied Logistic Regression" (3rd Ed., 2013)
aplot Decorate a 'ggplot' with Associated Information
aplotExtra Creating Composite Plots using 'aplot'
aplpack Another Plot Package: 'Bagplots', 'Iconplots',
'Summaryplots', Slider Functions and Others
apm Averaged Prediction Models
apmx Automated Population Pharmacokinetic Dataset
Assembly
apng Convert Png Files into Animated Png
apollo Tools for Choice Model Estimation and
Application
apor Assessment of Predictions for an Ordinal
Response
appRiori Code and Obtain Customized Planned Comparisons
with 'appRiori'
appeears Interface to 'AppEEARS' NASA Web Services
appleadsR Get Apple Search Ads Data via the 'Windsor.ai'
API
applicable A Compilation of Applicability Domain Methods
appnn Amyloid Propensity Prediction Neural Network
apportion Apportion Seats
appraise Bias-Aware Evidence Synthesis in Systematic
Reviews
approxOT Approximate and Exact Optimal Transport Methods
approximator Bayesian Prediction of Complex Computer Codes
approxmatch Approximately Optimal Fine Balance Matching
with Multiple Groups
appsflyeR Get Data from 'Appsflyer' via the 'Windsor.ai'
API
appsheet An Interface to the 'AppSheet' API
aprean3 Datasets from Draper and Smith "Applied
Regression Analysis" (3rd Ed., 1998)
aprof Amdahl's Profiler, Directed Optimization Made
Easy
apsimx Inspect, Read, Edit and Run 'APSIM' "Next
Generation" and 'APSIM' Classic
apt Asymmetric Price Transmission
apyramid Visualize Population Pyramids Aggregated by Age
aqfig Display Air Quality Model Output and Monitoring
Data
aqp Algorithms for Quantitative Pedology
aquacultuR A Comprehensive R Tool for Zootechnical Metrics
aquodom Access to Aquo domaintables from R (Dutch)
arabic2kansuji Convert Arabic Numerals to Kansuji
arabicStemR Arabic Stemmer for Text Analysis
arakno ARAchnid KNowledge Online
aramappings Computes Adaptable Radial Axes Mappings
arc Association Rule Classification
arcgeocoder Geocoding with the 'ArcGIS' REST API Service
arcgis ArcGIS Location Services Meta-Package
arcgisgeocode A Robust Interface to ArcGIS 'Geocoding
Services'
arcgislayers Harness ArcGIS Data Services
arcgisplaces Search for POIs using ArcGIS 'Places Service'
arcgisutils R-ArcGIS Bridge Utility Functions
archdata Example Datasets from Archaeological Research
archeoViz Visualisation, Exploration, and Web
Communication of Archaeological Spatial Data
archeofrag Spatial Analysis in Archaeology from Refitting
Fragments
archeofrag.gui Spatial Analysis in Archaeology from Refitting
Fragments (GUI)
archetypal Finds the Archetypal Analysis of a Data Frame
archetyper An Archetype for Data Mining and Data Science
Projects
archetypes Archetypal Analysis
archiDART Plant Root System Architecture Analysis Using
DART and RSML Files
archipelago Visualising Variant Set Association Test
Results
archive Multi-Format Archive and Compression Support
archiveRetriever Retrieve Archived Web Pages from the 'Internet
Archive'
archivist Tools for Storing, Restoring and Searching for
R Objects
arcopt Adaptive Regularization using Cubics for
Optimization
arcpbf Process ArcGIS Protocol Buffer
FeatureCollections
arcpullr Pull Data from an 'ArcGIS REST' API
arcpy Interface to 'ArcGIS' 'Python' Modules
arctools Processing and Physical Activity Summaries of
Minute Level Activity Data
ardl.nardl Linear and Nonlinear Autoregressive Distributed
Lag Models: General-to-Specific Approach
ardlverse Comprehensive ARDL: Panel, Bootstrap and
Fourier Methods
ards Creates Analysis Results Datasets
area Calculate Area of Triangles and Polygons
areaOfEffect Spatial Support at Scale
areabiplot Area Biplot
areal Areal Weighted Interpolation
areaplot Plot Stacked Areas and Confidence Bands as
Filled Polygons
arenar Arena for the Exploration and Comparison of any
ML Models
arete Automated REtrieval from TExt
arf Adversarial Random Forests
arfima Fractional ARIMA (and Other Long Memory) Time
Series Modeling
arg Clean and Simple Argument Checking
argminCS Argmin Inference over a Discrete Candidate Set
argo Accurate Estimation of Influenza Epidemics
using Google Search Data
argoFloats Analysis of Oceanographic Argo Floats
argonDash Argon Shiny Dashboard Template
argonR R Interface to Argon HTML Design
argosfilter Argos Locations Filter
argparse Command Line Optional and Positional Argument
Parser
argparser Command-Line Argument Parser
argus Random Variate Generator for the Argus
Distribution
aricode Efficient Computations of Standard Clustering
Comparison Measures
aridagri Comprehensive Statistical Tools for
Agricultural Research
arima2 Likelihood Based Inference for ARIMA Modeling
arkdb Archive and Unarchive Databases Using Flat
Files
arkhaia Archaeological and Historical Analysis
arkhe Tools for Cleaning Rectangular Data
arl Embedded Lisp Dialect
arlclustering Exploring Social Network Structures Through
Friendship-Driven Community Detection with
Association Rules Mining
arm Data Analysis Using Regression and
Multilevel/Hierarchical Models
armaOptions ARMA Models to Value Stock Options
armadillo4r An 'Armadillo' Interface
armspp Adaptive Rejection Metropolis Sampling (ARMS)
via 'Rcpp'
aroma.affymetrix Analysis of Large Affymetrix Microarray Data
Sets
aroma.apd A Probe-Level Data File Format Used by
'aroma.affymetrix' [deprecated]
aroma.cn Copy-Number Analysis of Large Microarray Data
Sets
aroma.core Core Methods and Classes Used by 'aroma.*'
Packages Part of the Aroma Framework
aroma.light Light-Weight Methods for Normalization and
Visualization of Microarray Data using Only
Basic R Data Types
arpr Advanced R Pipes
arrApply Apply a Function to a Margin of an Array
arrangements Fast Generators and Iterators for Permutations,
Combinations, Integer Partitions and
Compositions
arrayhelpers Convenience Functions for Arrays
arrg Flexible Argument Parsing for R Scripts
arrow Integration to 'Apache' 'Arrow'
arrowheadr Make Custom Arrowheads
ars Adaptive Rejection Sampling
arsenal An Arsenal of 'R' Functions for Large-Scale
Statistical Summaries
arthistory Art History Textbook Data
artma Automatic Replication Tools for Meta-Analysis
artpack Creates Generative Art Data
arules Mining Association Rules and Frequent Itemsets
arulesCBA Classification Based on Association Rules
arulesNBMiner Mining NB-Frequent Itemsets and NB-Precise
Rules
arulesSequences Mining Frequent Sequences
arulesViz Visualizing Association Rules and Frequent
Itemsets
asaur Data Sets for "Applied Survival Analysis Using
R""
asbio A Collection of Statistical Tools for
Biologists
ascii Export R Objects to Several Markup Languages
asciiSetupReader Reads Fixed-Width ASCII Data Files (.txt or
.dat) that Have Accompanying Setup Files (.sps
or .sas)
asciicast Create 'Ascii' Screen Casts from R Scripts
asciichartr Lightweight ASCII Line Graphs
asciiruler Render an ASCII Ruler
ascotraceR Simulate the Spread of Ascochyta Blight in
Chickpea
asd Simulations for Adaptive Seamless Designs
asdreader Reading ASD Binary Files in R
ash David Scott's ASH Routines
ashapesampler Generating Alpha Shapes
ashr Methods for Adaptive Shrinkage, using Empirical
Bayes
asht Applied Statistical Hypothesis Tests
askgpt Asking GPT About R Stuff
askpass Password Entry Utilities for R, Git, and SSH
aslib Interface to the Algorithm Selection Benchmark
Library
asm Optimal Convex M-Estimation for Linear
Regression via Antitonic Score Matching
asmbPLS Predicting and Classifying Patient Phenotypes
with Multi-Omics Data
asnipe Animal Social Network Inference and
Permutations for Ecologists
aspace Functions for Estimating Centrographic
Statistics
aspect A General Framework for Multivariate Analysis
with Optimal Scaling
aspi Analysis of Symmetry of Parasitic Infections
aspline Spline Regression with Adaptive Knot Selection
asremlPlus Augments 'ASReml-R' in Fitting Mixed Models and
Packages Generally in Exploring Prediction
Differences
assemblykor Korean National Assembly Data for Political
Science Education
assert Validate Function Arguments
assertHE Visualisation and Verification of Health
Economic Decision Models
assertable Verbose Assertions for Tabular Data
(Data.frames and Data.tables)
assertions Simple Assertions for Beautiful and
Customisable Error Messages
assertr Assertive Programming for R Analysis Pipelines
assertthat Easy Pre and Post Assertions
assessor Assessment Tools for Regression Models with
Discrete and Semicontinuous Outcomes
assignPOP Population Assignment using Genetic,
Non-Genetic or Integrated Data in a Machine
Learning Framework
assignR Infer Geographic Origin from Isotopic Data
assist A Suite of R Functions Implementing Spline
Smoothing Techniques
assocInd Implements New and Existing Association Indices
for Constructing Animal Social Networks
assorthead Assorted Header-Only C++ Libraries
assortnet Calculate the Assortativity Coefficient of
Weighted and Binary Networks
asteRisk Computation of Satellite Position
aster Aster Models
aster2 Aster Models
astgrepr Parse and Manipulate R Code
astroFns Astronomy: Time and Position Functions, Misc.
Utilities
astrochron A Computational Tool for Astrochronology
astronomR Cosmic Insights: Statistical Frameworks for
Astronomers
astronomyengine R Bindings to the 'Astronomy Engine' C Library
astsa Applied Statistical Time Series Analysis
asus Adaptive SURE Thresholding Using Side
Information
asylum Data on Asylum and Resettlement for the UK
asymmetry Multidimensional Scaling of Asymmetric
Proximities
asymmetry.measures Asymmetry Measures for Probability Density
Functions
asympDiag Diagnostic Tools for Asymptotic Theory
asympTest A Simple R Package for Classical Parametric
Statistical Tests and Confidence Intervals in
Large Samples
asymptor Estimate Asymptomatic Cases via
Capture/Recapture Methods
atRisk At-Risk
ata Automated Test Assembly
atable Create Tables for Reporting Clinical Trials
atakrig Area-to-Area Kriging
atime Asymptotic Timing
atlas Stanford 'ATLAS' Search Engine API
atlasapprox Cell Atlas Approximations
atmopt Analysis-of-Marginal-Tail-Means
ato Download and Tidy Australian Taxation Office
Data
atom4R Tools to Handle and Publish Metadata as 'Atom'
XML Format
atpolR ATPOL Grid Implementation
atrrr Wrapper for the 'AT' Protocol Behind 'Bluesky'
attachment Deal with Dependencies
attempt Tools for Defensive Programming
attention Self-Attention Algorithm
attrib Attributable Burden of Disease
auRoc Various Methods to Estimate the AUC
audio Audio Interface for R
audiometry Standard Conform Pure Tone Audiometry (PTA)
Plots
audit Bounds for Accounting Populations
auditor Model Audit - Verification, Validation, and
Error Analysis
audrex Automatic Dynamic Regression using Extreme
Gradient Boosting
audubon Japanese Text Processing Tools
augSIMEX Analysis of Data with Mixed Measurement Error
and Misclassification in Covariates
auk eBird Data Extraction and Processing in R
aum Area Under Minimum of False Positives and
Negatives
ausplotsR TERN AusPlots Australian Ecosystem Monitoring
Data
auth0 Authentication in Shiny with Auth0
authordown Author Metadata Management and Manuscript Front
Matter
authoritative Parse and Deduplicate Author Names
auto.pca Automatic Variable Reduction Using Principal
Component Analysis
autoBagging Learning to Rank Bagging Workflows with
Metalearning
autoCovariateSelection
Automated Covariate Selection Using HDPS
Algorithm
autoEnsemble Automated Stacked Ensemble Classifier for
Severe Class Imbalance
autoFC Automatic Toolkit for Construction,
Optimization, Scoring and Simulation of
Forced-Choice Tests
autoFRK Automatic Fixed Rank Kriging
autoFlagR AI-Driven Anomaly Detection for Data Quality
autoGO Auto-GO: Reproducible, Robust and High Quality
Ontology Enrichment Visualizations
autoLibLoad Automate Retrieving, Building, Installing and
Loading Specified Packages
autoMR Automated Mendelian Randomization Workflows and
Visualizations
autoReg Automatic Linear and Logistic Regression and
Survival Analysis
autoScorecard Fully Automatic Generation of Scorecards
autoTS Automatic Model Selection and Prediction for
Univariate Time Series
autoann Neural Network–Based Model Selection and
Forecasting
autocodebook Automatic Codebook and Tracking for 'Spark' and
'dplyr' Pipelines
autocogs Automatic Cognostic Summaries
autodb Automatic Database Normalisation for Data
Frames
autogam Automate the Creation of Generalized Additive
Models (GAMs)
autograph Automatic Plotting and Theming of Many Graphs
autoharp Semi-Automatic Grading of R and Rmd Scripts
autohrf Automated Generation of Data-Informed GLM
Models in Task-Based fMRI Data Analysis
autoimage Multiple Heat Maps for Projected Coordinates
autoimport Automatic Generation of @importFrom Tags
autokeras R Interface to 'AutoKeras'
automagic Automagically Document and Install Packages
Necessary to Run R Code
automap Automatic Interpolation Package
automatedRecLin Record Linkage Based on an Entropy-Maximizing
Classifier
automatedtests Automating Choosing Statistical Tests
automerge R Bindings for 'Automerge' 'CRDT' Library
autometric Background Resource Logging
automl Deep Learning with Metaheuristic
autonewsmd Auto-Generate Changelog using Conventional
Commits
autoshiny Automatic Transformation of an 'R' Function
into a 'shiny' App
autoslider.core Slide Automation for Tables, Listings and
Figures
autostats Auto Stats
autostsm Automatic Structural Time Series Models
autotab Variational Autoencoders for Heterogeneous
Tabular Data
autotestR Automated Functions for Basic Statistical Tests
autotesteR Automated Functions for Basic Statistical Tests
autothresholdr An R Port of the 'ImageJ' Plugin 'Auto
Threshold'
autovi Auto Visual Inference with Computer Vision
Models
auxvecLASSO LASSO Auxiliary Variable Selection and
Auxiliary Vector Diagnostics
av Working with Audio and Video in R
available Check if the Title of a Package is Available,
Appropriate and Interesting
avar Allan Variance
averisk Calculation of Average Population Attributable
Fractions and Confidence Intervals
avesperu Access to the List of Bird Species of Peru
avidaR A Computational Biologist’s Toolkit To Get Data
From 'avidaDB'
avilistr Access and Work with the 'AviList' Global Avian
Checklist
avlm Safe Anytime Valid Inference for Linear Models
avocado Weekly Hass Avocado Sales Summary
avotrex A Global Dataset of Anthropogenic Extinct Birds
and their Traits: Phylogeny Builder
avseqmc Anytime-Valid Sequential Estimation of
Monte-Carlo p-Values
avstrat Stratigraphic Data Processing and Section Plots
awdb Query the USDA NWCC Air and Water Database REST
API
aweSOM Interactive Self-Organizing Maps
aweek Convert Dates to Arbitrary Week Definitions
awinR Get Data from 'Awin' via the 'Windsor.ai' API
aws Adaptive Weights Smoothing
aws.ecx Communicating with AWS EC2 and ECS using AWS
REST APIs
aws.iam AWS IAM Client Package
aws.kms 'AWS Key Management Service' Client Package
aws.lambda AWS Lambda Client Package
aws.polly Client for AWS Polly
aws.s3 'AWS S3' Client Package
aws.signature Amazon Web Services Request Signatures
aws.transcribe Client for 'AWS Transcribe'
aws.translate Client for 'AWS Translate'
aws.wrfsmn Data Processing of SMN Hi-Res Weather Forecast
from 'AWS'
awsMethods Class and Methods Definitions for Packages
'aws', 'adimpro', 'fmri', 'dwi'
axisandallies Axis and Allies Spring
azlogr Logging in 'R' and Post to 'Azure Log
Analytics' Workspace
azr Credential Chain for Seamless 'OAuth 2.0'
Authentication to 'Azure Services'
azuremapsr Interface to the 'Azure Maps' API
azuremlsdk Interface to the 'Azure Machine Learning' 'SDK'
b32 Fast and Vectorized Base32 Encoding
b64 Fast and Vectorized Base 64 Engine
bReeze Functions for Wind Resource Assessment
bSi Modeling and Computing Biogenic Silica ('bSi')
from Inland and Pelagic Sediments
bSims Agent-Based Bird Point Count Simulator
bWGR Bayesian Whole-Genome Regression
baRcodeR Label Creation for Tracking and Collecting Data
from Biological Samples
baRulho Quantifying (Animal) Sound Degradation
babebi Bayesian Estimation and Validation for Small-N
Designs with Rater Bias
babel Ribosome Profiling Data Analysis
babelgene Gene Orthologs for Model Organisms in a Tidy
Data Format
babelmixr2 Use 'nlmixr2' to Interact with Open Source and
Commercial Software
babelwhale Talking to 'Docker' and 'Singularity'
Containers
babette Control 'BEAST2'
babyTimeR Parse Output from 'BabyTime' Application
babynames US Baby Names 1880-2017
babynamesIL Israel Baby Names 1949-2024
bacenR Access Data from Brazilian Central Bank:
IFdata, Active Institutions, Balance Sheets and
Normative Acts
bacistool Bayesian Classification and Information Sharing
(BaCIS) Tool for the Design of Multi-Group
Phase II Clinical Trials
backbone Extracts the Backbone from Networks
backpipe Backward Pipe (Right-to-Left) Operator
backports Reimplementations of Functions Introduced Since
R-3.0.0
backtest Exploring Portfolio-Based Conjectures About
Financial Instruments
backtestGraphics Interactive Graphics for Portfolio Data
baclava Bayesian Analysis of Cancer Latency with
Auxiliary Variable Augmentation
bacondecomp Goodman-Bacon Decomposition
bacontrees Bayesian Context Trees for Discrete Sequence
Data
bacr Bayesian Adjustment for Confounding
badgen Fast and Simple Badge Generator
badger Badge for R Package
badp Bayesian Averaging for Dynamic Panels
baf Block Assignment Files
baffle Make Waffle Plots with Base Graphics
bage Bayesian Estimation and Forecasting of
Age-Specific Rates
bagged.outliertrees Robust Explainable Outlier Detection Based on
OutlierTree
baggingbwsel Bagging Bandwidth Selection in Kernel Density
and Regression Estimation
baggr Bayesian Aggregate Treatment Effects
baguette Efficient Model Functions for Bagging
bagyo Philippine Tropical Cyclones Data
bahc Filter Covariance and Correlation Matrices with
Bootstrapped-Averaged Hierarchical Ansatz
bain Bayes Factors for Informative Hypotheses
baizer Useful Functions for Data Processing
bakR Analyze and Compare Nucleotide Recoding RNA
Sequencing Datasets
bakeoff Data from "The Great British Bake Off"
baker "Nested Partially Latent Class Models"
bakerrr Background-Parallel Jobs
baldur Bayesian Hierarchical Modeling for Label-Free
Proteomics
balnet Pathwise Estimation of Covariate Balancing
Propensity Scores
bama High Dimensional Bayesian Mediation Analysis
bambooHR A Wrapper to the 'BambooHR' API
bamdit Bayesian Meta-Analysis of Diagnostic Test Data
bamlss Bayesian Additive Models for Location, Scale,
and Shape (and Beyond)
bamm Species Distribution Models as a Function of
Biotic, Abiotic and Movement Factors (BAM)
bamp Bayesian Age-Period-Cohort Modeling and
Prediction
bamsignals Extract read count signals from bam files
banR Client for the 'BAN' API
bandicoot Light-Weight 'python'-Like Object-Oriented
System
bandit Functions for Simple a/B Split Test and
Multi-Armed Bandit Analysis
banditpam Almost Linear-Time k-Medoids Clustering
banditsCI Bandit-Based Experiments and Policy Evaluation
bandsfdp Compute Upper Prediction Bounds on the FDP in
Competition-Based Setups
banffIT Automated Standardized Assignment of the Banff
Classification
bang Bayesian Analysis, No Gibbs
bangladesh Provides Ready to Use Shapefiles for
Geographical Map of Bangladesh
bannerCommenter Make Banner Comments with a Consistent Format
banter BioAcoustic eveNT classifiER
banxicoR Download Data from the Bank of Mexico
baorista Bayesian Aoristic Analyses
bapred Batch Effect Removal and Addon Normalization
(in Phenotype Prediction using Gene Data)
barcode Render Barcode Distribution Plots
bark Bayesian Additive Regression Kernels
barrel Covariance-Based Ellipses and Annotation Tools
for Ordination Plots
barrks Calculate Bark Beetle Phenology Using Different
Models
barry Your Go-to Motif Accountant
bartCause Causal Inference using Bayesian Additive
Regression Trees
bartMachine Bayesian Additive Regression Trees
bartMachineJARs bartMachine JARs
bartMan Create Visualisations for BART Models
bartXViz Visualization of BART and BARP using SHAP
bartcs Bayesian Additive Regression Trees for
Confounder Selection
basad Bayesian Variable Selection with Shrinking and
Diffusing Priors
base.rms Convert Regression Between Base Function and
'rms' Package
base64 Base64 Encoder and Decoder
base64enc Tools for 'base64' Encoding
base64url Fast and URL-Safe Base64 Encoder and Decoder
baseballr Acquiring and Analyzing Baseball Data
basecamb Utilities for Streamlined Data Import,
Imputation and Modelling
basedosdados 'Base Dos Dados' R Client
basefun Infrastructure for Computing with Basis
Functions
baseline Baseline Correction of Spectra
baselinenowcast Baseline Nowcasting for Right-Truncated
Epidemiological Data
basemaps Accessing Spatial Basemaps in R
basemodels Baseline Models for Classification and
Regression
basepenguins Convert Files that Use 'palmerpenguins' to Work
with 'datasets'
baseq Basic Sequence Processing Tool for Biological
Data
baserater Base-Rate Item Evaluation and Typicality
Scoring Using Large Language Models
bases Basis Expansions for Regression Modeling
basetheme Themes for Base Graphics Plots
baseverse Modern Base-R Functions
basf Plot Simple Features with 'base' Sensibilities
basicMCMCplots Trace Plots, Density Plots and Chain
Comparisons for MCMC Samples
basicdrm Fit Hill Dose Response Models
basicspace Recovering a Basic Space from Issue Scales
basictabler Construct Rich Tables for Output to
'HTML'/'Excel'
basifoR Retrieval and Processing of the Spanish
National Forest Inventory
basilisk Freezing Python Dependencies Inside
Bioconductor Packages
basket Basket Trial Analysis
baskexact Analytical Calculation of Basket Trial
Operating Characteristics
baskoptr Utility-Based Optimization for Basket Trial
Designs
basksim Simulation-Based Calculation of Basket Trial
Operating Characteristics
baskwrap Wrapper Package for Several Basket Trial R
Packages
batata Managing Packages Removal and Installation
batch Batching Routines in Parallel and Passing
Command-Line Arguments to R
batchelor Single-Cell Batch Correction Methods
batchmeans Consistent Batch Means Estimation of Monte
Carlo Standard Errors
batchmix Semi-Supervised Bayesian Mixture Models
Incorporating Batch Correction
batchscr Batch Script Helpers
batchtma Batch Effect Adjustments
batchtools Tools for Computation on Batch Systems
bate Computes Bias-Adjusted Treatment Effect
batman Convert Categorical Representations of Logicals
to Actual Logicals
batsch Real-Time PCR Data Sets by Batsch et al. (2008)
batteryreduction An R Package for Data Reduction by Battery
Reduction
bayMDS Bayesian Multidimensional Scaling and Choice of
Dimension
bayclumpr Bayesian Analysis of Clumped Isotope Datasets
baycn Bayesian Inference for Causal Networks
bayefdr Bayesian Estimation and Optimisation of
Expected False Discovery Rate
bayesCureRateModel Bayesian Cure Rate Modeling for Time-to-Event
Data
bayesDP Implementation of the Bayesian Discount Prior
Approach for Clinical Trials
bayesDccGarch Methods and Tools for Bayesian Dynamic
Conditional Correlation GARCH(1,1) Model
bayesDiagnostics Comprehensive Bayesian Model Diagnostics and
Comparison Tools
bayesEO Bayesian Smoothing of Remote Sensing Image
Classification
bayesGARCH Bayesian Estimation of the GARCH(1,1) Model
with Student-t Innovations
bayesImageS Bayesian Methods for Image Segmentation using a
Potts Model
bayesLife Bayesian Projection of Life Expectancy
bayesMRM Bayesian Multivariate Receptor Modeling
bayesMeanScale Bayesian Post-Estimation on the Mean Scale
bayesMig Bayesian Projection of Migration
bayesPO Bayesian Inference for Presence-Only Data
bayesPop Probabilistic Population Projection
bayesQR Bayesian Quantile Regression
bayesQRsurvey Bayesian Quantile Regression Models for Complex
Survey Data Analysis
bayesROE Bayesian Regions of Evidence
bayesRecon Probabilistic Reconciliation via Conditioning
bayesSSM Bayesian Methods for State Space Models
bayesSurv Bayesian Survival Regression with Flexible
Error and Random Effects Distributions
bayesTFR Bayesian Fertility Projection
bayesWatch Bayesian Change-Point Detection for Process
Monitoring with Fault Detection
bayesammi Bayesian Estimation of the Additive Main
Effects and Multiplicative Interaction Model
bayesanova Bayesian Inference in the Analysis of Variance
via Markov Chain Monte Carlo in Gaussian
Mixture Models
bayesboot An Implementation of Rubin's (1981) Bayesian
Bootstrap
bayescount Power Calculations and Bayesian Analysis of
Count Distributions and FECRT Data using MCMC
bayesefa Bayesian Exploratory Factor Analysis
bayesestdft Estimating the Degrees of Freedom of the
Student's t-Distribution under a Bayesian
Framework
bayesforecast Bayesian Time Series Modeling with Stan
bayesian Bindings for Bayesian TidyModels
bayesianETAS Bayesian Estimation of the Temporal and
Spatio-Temporal ETAS Models for Earthquake
Occurrences
bayesianOU Bayesian Nonlinear Ornstein-Uhlenbeck Models
with Stochastic Volatility
bayesianVARs MCMC Estimation of Bayesian
Vectorautoregressions
bayesiansurpriser Bayesian Surprise for De-Biasing Thematic Maps
bayesics Bayesian Analyses for One- and Two-Sample
Inference and Regression Methods
bayeslist Bayesian Analysis of List Experiments with
Prior Information
bayeslm Efficient Sampling for Gaussian Linear
Regression with Arbitrary Priors
bayeslongitudinal Adjust Longitudinal Regression Models Using
Bayesian Methodology
bayesm Bayesian Inference for
Marketing/Micro-Econometrics
bayesmeta Bayesian Random-Effects Meta-Analysis and
Meta-Regression
bayesmix Bayesian Mixture Models with JAGS
bayesmlogit A Multistate Life Table (MSLT) Methodology
Based on Bayesian Approach
bayesmove Non-Parametric Bayesian Analyses of Animal
Movement
bayesmsm Fitting Bayesian Marginal Structural Models for
Longitudinal Observational Data
bayesnec A Bayesian No-Effect- Concentration (NEC)
Algorithm
bayesplay The Bayes Factor Playground
bayesplot Plotting for Bayesian Models
bayespm Bayesian Statistical Process Monitoring
bayespmtools Bayesian Sample Size and Precision
Considerations for Risk Prediction Models
bayesqm Bayesian Q Methodology: Probabilistic Factor
Analysis
bayesreg Bayesian Regression Models with Global-Local
Shrinkage Priors
bayesrules Datasets and Supplemental Functions from Bayes
Rules! Book
bayest Effect Size Targeted Bayesian Two-Sample
t-Tests via Markov Chain Monte Carlo in
Gaussian Mixture Models
bayestestR Understand and Describe Bayesian Models and
Posterior Distributions
bayesvl Visually Learning the Graphical Structure of
Bayesian Networks and Performing MCMC with
'Stan'
bayfoxr Global Bayesian Foraminifera Core Top
Calibration
baygel Bayesian Shrinkage Estimators for Precision
Matrices in Gaussian Graphical Models
baymedr Computation of Bayes Factors for Common
Biomedical Designs
bayou Bayesian Fitting of Ornstein-Uhlenbeck Models
to Phylogenies
bayprior Bayesian Prior Elicitation and Diagnostics for
Clinical Trials
baystability Bayesian Stability Analysis of Genotype by
Environment Interaction (GEI)
baytaAAR Bayesian Transition Analysis with Markov Chain
Monte Carlo
baytrends Long Term Water Quality Trend Analysis
bbdetection Identification of Bull and Bear States of the
Market
bbk Client for Central Bank APIs
bbknnR Perform Batch Balanced KNN in R
bbl Boltzmann Bayes Learner
bbmix Bayesian Model for Genotyping using RNA-Seq
bbmle Tools for General Maximum Likelihood Estimation
bbnet Create Simple Predictive Models on Bayesian
Belief Networks
bbotk Black-Box Optimization Toolkit
bbreg Bessel and Beta Regressions via
Expectation-Maximization Algorithm for
Continuous Bounded Data
bbssr Blinded Sample Size Re-Estimation for Binary
Endpoints
bbw Blocked Weighted Bootstrap
bc3net Gene Regulatory Network Inference with Bc3net
bcROCsurface Bias-Corrected Methods for Estimating the ROC
Surface of Continuous Diagnostic Tests
bcRP Access 'BCRPDATA' API
bcaboot Bias Corrected Bootstrap Confidence Intervals
bcc Beta Control Charts
bccp Bias Correction under Censoring Plan
bcdata Search and Retrieve Data from the BC Data
Catalogue
bcf Causal Inference using Bayesian Causal Forests
bcfrailph Semiparametric Bivariate Correlated Frailty
Models Fit
bcfrailphdv Bivariate Correlated Frailty Models with Varied
Variances
bclogit Conditional Logistic Regression
bcmaps Map Layers and Spatial Utilities for British
Columbia
bcmixed Mixed Effect Model with the Box-Cox
Transformation
bcp Bayesian Analysis of Change Point Problems
bcpa Behavioral Change Point Analysis of Animal
Movement
bcputility Wrapper for SQL Server bcp Utility
bcrypt 'Blowfish' Key Derivation and Password Hashing
bcv Cross-Validation for the SVD
(Bi-Cross-Validation)
bdDwC Darwinizer: Darwin Core (DwC) Field Names
Standardization
bda Binned Data Analysis
bdc Biodiversity Data Cleaning
bddkR Gathering Monthly Banking Sector Data from BDDK
of Turkey
bde Bounded Density Estimation
bdf3 Efficient Block Designs for 3-Level Factorial
Experiments in Block Size 3
bdl Interface and Tools for 'BDL' API
bdlim Bayesian Distributed Lag Interaction Models
bdlnm Bayesian Distributed Lag Non-Linear Models
(B-DLNM)
bdlp Transparent and Reproducible Artificial Data
Generation
bdots Bootstrapped Differences of Time Series
bdpar Big Data Preprocessing Architecture
bdpv Inference and Design for Predictive Values in
Diagnostic Tests
bdrc Bayesian Discharge Rating Curves
bdribs Bayesian Detection of Potential Risk Using
Inference on Blinded Safety Data
bdscale Remove Weekends and Holidays from ggplot2 Axes
bdsm Bayesian Dynamic Systems Modeling
bdsmatrix Routines for Block Diagonal Symmetric Matrices
bdsvd Block Structure Detection Using Singular
Vectors
bea.R Bureau of Economic Analysis API
beachmat Compiling Bioconductor to Handle Each Matrix
Type
beadplexr Analysis of Multiplex Cytometric Bead Assays
beakr A Minimalist Web Framework for R
beam Fast Bayesian Inference in Large Gaussian
Graphical Models
bean Data Thinning of Species Occurrences in
Environmental Space
beanplot Visualization via Beanplots (Like
Boxplot/Stripchart/Violin Plot)
beans Data on Dried Beans
bearishTrader Trading Strategies for Bearish Outlook
beast Bayesian Estimation of Change-Points in the
Slope of Multivariate Time-Series
beastier Call 'BEAST2'
beastt Bayesian Evaluation, Analysis, and Simulation
Software Tools for Trials
beautier 'BEAUti' from R
beaver Bayesian Model Averaging of Covariate Adjusted
Negative-Binomial Dose-Response
bedr Genomic Region Processing using Tools Such as
'BEDTools', 'BEDOPS' and 'Tabix'
bedrockbio Open-Access Computational Biology Datasets
beeca Binary Endpoint Estimation with Covariate
Adjustment
beepr Easily Play Notification Sounds on any Platform
beeswarm The Bee Swarm Plot, an Alternative to
Stripchart
beezdemand Behavioral Economic Easy Demand
beezdiscounting Behavioral Economic Easy Discounting
befproj Makes a Local Population Projection
behaviorchange Tools for Behavior Change Researchers and
Professionals
behavr Canonical Data Structure for Behavioural Data
belex Download Historical Data from the Belgrade
Stock Exchange
belg Boltzmann Entropy of a Landscape Gradient
bellreg Count Regression Models Based on the Bell
Distribution
bench High Precision Timing of R Expressions
benchden 28 Benchmark Densities from Berlinet/Devroye
(1994)
benchmarkme Crowd Sourced System Benchmarks
benchmarkmeData Data Set for the 'benchmarkme' Package
benford Benford's Analysis on Large Data Sets
benford.analysis Benford Analysis for Data Validation and
Forensic Analytics
bennu Bayesian Estimation of Naloxone Kit Number
Under-Reporting
bentcableAR Bent-Cable Regression for Independent Data or
Autoregressive Time Series
benthos Marine Benthic Ecosystem Analysis
berryFunctions Function Collection Related to Plotting and
Hydrology
bertopicr Topic Modeling with 'BERTopic'
bespatial Boltzmann Entropy for Spatial Data
bestNormalize Normalizing Transformation Functions
bestSDP Burden Estimate of Common Communicable Diseases
in Settlements of Displaced Populations
bestglm Best Subset GLM and Regression Utilities
besthr Generating Bootstrap Estimation Distributions
of HR Data
betaARMA Beta Autoregressive Moving Average Models
betaBayes Bayesian Beta Regression
betaDelta Confidence Intervals for Standardized
Regression Coefficients
betaMC Monte Carlo for Regression Effect Sizes
betaNB Bootstrap for Regression Effect Sizes
betaSandwich Robust Confidence Intervals for Standardized
Regression Coefficients
betaStability Quantify the Compositional Stability of Each
Community Based on a Single Sampling Event
betacal Beta Calibration
betaclust A Family of Beta Mixture Models for Clustering
Beta-Valued DNA Methylation Data
betafunctions Functions for Working with Two- And
Four-Parameter Beta Probability Distributions
and Psychometric Analysis of Classifications
betapart Partitioning Beta Diversity into Turnover and
Nestedness Components
betaper Taxonomic Uncertainty on Multivariate Analyses
of Ecological Data
betareg Beta Regression
betaregscale Beta Regression for Interval-Censored
Scale-Derived Outcomes
betaselectr Betas-Select in Structural Equation Models and
Linear Models
betategarch Simulation, Estimation and Forecasting of
Beta-Skew-t-EGARCH Models
bethel Bethel's algorithm.
bets.covid19 The BETS Model for Early Epidemic Data
bexy Visualize and Parse the Output of 'BeXY'
beyondWhittle Bayesian Spectral Inference for Time Series
bezier Toolkit for Bezier Curves and Splines
bfast Breaks for Additive Season and Trend
bfbin2arm Bayes Factor Design for Two-Arm Binomial Trials
bfboin Operating Characteristics for the Bayesian
Optimal Interval Design with Back Filling
bfboinet Backfill Bayesian Optimal Interval Design Using
Efficacy and Toxicity
bfcluster Buttler-Fickel Distance and R2 for Mixed-Scale
Cluster Analysis
bfp Bayesian Fractional Polynomials
bfpwr Power and Sample Size Calculations for Bayes
Factor Analysis
bfsMaps Plot Maps from Switzerland by Swiss Federal
Statistical Office
bfsl Best-Fit Straight Line
bfw Bayesian Framework for Computational Modeling
bgev Bimodal GEV Distribution with Location
Parameter
bgeva Binary Generalized Extreme Value Additive
Models
bggum Bayesian Estimation of Generalized Graded
Unfolding Model Parameters
bgmfiles Example BGM Files for the Atlantis Ecosystem
Model
bgms Bayesian Analysis of Networks of Binary and/or
Ordinal Variables
bgumbel Bimodal Gumbel Distribution
bgw Bunch-Gay-Welsch Statistical Estimation
bhetGP Bayesian Heteroskedastic Gaussian Processes
bhm Biomarker Threshold Models
bhmbasket Bayesian Hierarchical Models for Basket Trials
bhpm Bayesian Hierarchical Poisson Models for
Multiple Grouped Outcomes with Clustering
bib2df Parse a BibTeX File to a Data Frame
biblio Interacting with BibTeX Databases
bibliometrix Comprehensive Science Mapping Analysis
bibliometrixData Bibliometrix Example Datasets
biblionetwork Create Different Types of Bibliometric Networks
bibliorefer Generator of Main Scientific References
biblioverlap Document-Level Matching Between Bibliographic
Datasets
bibnets Importing, Constructing, and Exporting
Bibliometric Networks
bibtex Bibtex Parser
bidask Efficient Estimation of Bid-Ask Spreads from
Open, High, Low, and Close Prices
bidser Work with 'BIDS' (Brain Imaging Data Structure)
Projects
bidsr A Brain Imaging Data Structure ('BIDS') Parser
bidux Behavioral Insight Design: A Toolkit for
Integrating Behavioral Science in UI/UX Design
bife Binary Choice Models with Fixed Effects
bifrost Branch-Level Inference Framework for
Recognizing Optimal Shifts in Traits
bifurcatingr Bifurcating Autoregressive Models
bigANNOY Approximate k-Nearest Neighbour Search for
'bigmemory' Matrices with Annoy
bigBits Perform Boolean Operations on Large Numbers
bigD Flexibly Format Dates and Times to a Given
Locale
bigDM Scalable Bayesian Disease Mapping Models for
High-Dimensional Data
bigGP Distributed Gaussian Process Calculations
bigKNN Exact Search and Graph Construction for
'bigmemory' Matrices
bigMICE Multiple Imputation of Big Data
bigPCAcpp Principal Component Analysis for 'bigmemory'
Matrices
bigPLSR Partial Least Squares Regression Models with
Big Matrices
bigPLScox Partial Least Squares for Cox Models with Big
Matrices
bigQF Quadratic Forms in Large Matrices
bigReg Generalized Linear Models (GLM) for Large Data
Sets
bigSurvSGD Big Survival Analysis Using Stochastic Gradient
Descent
bigalgebra 'BLAS' and 'LAPACK' Routines for Native R
Matrices and 'big.matrix' Objects
biganalytics Utilities for 'big.matrix' Objects from Package
'bigmemory'
bigassertr Assertion and Message Functions
bigdatadist Distances for Machine Learning and Statistics
in the Context of Big Data
bigergm Fit, Simulate, and Diagnose Hierarchical
Exponential-Family Models for Big Networks
biglasso Extending Lasso Model Fitting to Big Data
bigleaf Physical and Physiological Ecosystem Properties
from Eddy Covariance Data
biglm Bounded Memory Linear and Generalized Linear
Models
biglmm Bounded Memory Linear and Generalized Linear
Models
bigmatch Making Optimal Matching Size-Scalable Using
Optimal Calipers
bigmds Multidimensional Scaling for Big Data
bigmemory Manage Massive Matrices with Shared Memory and
Memory-Mapped Files
bigmemory.sri A Shared Resource Interface for Bigmemory
Project Packages
bignum Arbitrary-Precision Integer and Floating-Point
Mathematics
bigparallelr Easy Parallel Tools
bigreadr Read Large Text Files
bigrquery An Interface to Google's 'BigQuery' 'API'
bigrquerystorage An Interface to Google's 'BigQuery Storage' API
bigsimr Fast Generation of High-Dimensional Random
Vectors
bigsnpr Analysis of Massive SNP Arrays
bigsparser Sparse Matrix Format with Data on Disk
bigsplines Smoothing Splines for Large Samples
bigstatsr Statistical Tools for Filebacked Big Matrices
bigstep Stepwise Selection for Large Data Sets
bigtabulate Table, Apply, and Split Functionality for
Matrix and 'big.matrix' Objects
bigtcr Nonparametric Analysis of Bivariate Gap Time
with Competing Risks
bigtime Sparse Estimation of Large Time Series Models
bigutilsr Utility Functions for Large-scale Data
bikeshare14 Bay Area Bike Share Trips in 2014
bikm1 Co-Clustering Adjusted Rand Index and Bikm1
Procedure for Contingency and Binary Data-Sets
bild A Package for BInary Longitudinal Data
billboard Contains Data of Billboard Hot 100 Songs
billboarder Create Interactive Chart with the JavaScript
'Billboard' Library
bimets Time Series and Econometric Modeling
bin2norm Hierarchical Probit Estimation for Dichotomized
Data
binGroup Evaluation and Experimental Design for Binomial
Group Testing
binMto Many-to-One Comparisons of Proportions
binancer API Client to 'Binance'
binaryGP Fit and Predict a Gaussian Process Model with
(Time-Series) Binary Response
binaryRL Reinforcement Learning Tools for
Two-Alternative Forced Choice Tasks
binb 'binb' is not 'Beamer'
binda Multi-Class Discriminant Analysis using Binary
Predictors
bindata Generation of Artificial Binary Data
bindr Parametrized Active Bindings
bindrcpp An 'Rcpp' Interface to Active Bindings
binequality Methods for Analyzing Binned Income Data
binest Estimation of Group Means and SDs from Binned
Count Data
binford Binford's Hunter-Gatherer Data
binfunest Estimates Parameters of Functions Driving
Binomial Random Variables
bingadsR Get Bing Ads Data via the 'Windsor.ai' API
binhf Haar-Fisz Functions for Binomial Data
binman A Binary Download Manager
binom Binomial Confidence Intervals for Several
Parameterizations
binomCI Confidence Intervals for a Binomial Proportion
binomialtrend Calculates the Statistical Significance of a
Trend in a Set of Measurements
binovisualfields Depth-Dependent Binocular Visual Fields
Simulation
binpackr Fast 1d Bin Packing
binr Cut Numeric Values into Evenly Distributed
Groups
binsegRcpp Efficient Implementation of Binary Segmentation
binseqtest Exact Binary Sequential Designs and Analysis
binsmooth Generate PDFs and CDFs from Binned Data
binspp Bayesian Inference for Neyman-Scott Point
Processes
binsreg Binscatter Estimation and Inference
binst Data Preprocessing, Binning for Classification
and Regression
binxr 'Binance' REST API Client
bio.infer Predict Environmental Conditions from
Biological Observations
bio3d Biological Structure Analysis
bioC.logs BioConductor Package Downloads Stats
bioLeak Leakage-Safe Modeling and Auditing for Genomic
and Clinical Data
bioRad Biological Analysis and Visualization of
Weather Radar Data
bioSNR Bioacoustic Basic Operations with Decibels and
the Passive Sonar Equation
bioacoustics Analyse Audio Recordings and Automatically
Extract Animal Vocalizations
biobricks Access Data Dependencies Installed Through
'Biobricks.ai'
biocViews Categorized views of R package repositories
bioclim Bioclimatic Analysis and Classification
biocmake CMake for Bioconductor
biocompute Create and Manipulate BioCompute Objects
biodb Biodb, a Library and a Development Framework
for Connecting to Chemical and Biological
Databases
biodosetools 'shiny' Application for Biological Dosimetry
biogas Process Biogas Data and Predict Biogas
Production
biogeom Biological Geometries
biogram N-Gram Analysis of Biological Sequences
biogrowth Modelling of Population Growth
bioimagetools Tools for Microscopy Imaging
bioinactivation Mathematical Modelling of (Dynamic) Microbial
Inactivation
biolink Create Hyperlinks to Biological Databases and
Resources
biologicalActivityIndices
Biological Activity Indices
biomaRt Interface to BioMart databases (i.e. Ensembl)
biomartr Genomic Data Retrieval
biometrics A Package for Biometrics and Modelling
biometryassist Functions to Assist Design and Analysis of
Agronomic Experiments
biomformat An interface package for the BIOM file format
biomod2 Ensemble Platform for Species Distribution
Modeling
bionetdata Biological and Chemical Data Networks
biopixR Extracting Insights from Biological Images
bioregion Comparison of Bioregionalization Methods
bios2mds From Biological Sequences to Multidimensional
Scaling
biosampleR Biodiversity Index Calculation and Bootstrap
Confidence Interval Estimation
biosensors.usc Distributional Data Analysis Techniques for
Biosensor Data
bioseq A Toolbox for Manipulating Biological Sequences
biosignalEMG Tools for Electromyogram Signals (EMG) Analysis
biospear Biomarker Selection in Penalized Regression
Models
biostat3 Utility Functions, Datasets and Extended
Examples for Survival Analysis
biostats Biostatistics and Clinical Data Analysis
biostats101 Practical Functions for Biostatistics Beginners
biotic Calculation of Freshwater Biotic Indices
biotools Tools for Biometry and Applied Statistics in
Agricultural Science
biovizBase Basic graphic utilities for visualization of
genomic data.
bipartite Visualising Bipartite Networks and Calculating
Some (Ecological) Indices
bipartiteD3 Interactive Bipartite Graphs
bipd Bayesian Individual Patient Data Meta-Analysis
using 'JAGS'
bipl5 Construct Reactive Calibrated Axes Biplots
biplotEZ EZ-to-Use Biplots
biplotbootGUI Bootstrap on Classical Biplots and Clustering
Disjoint Biplot
birankr Ranking Nodes in Bipartite and Weighted
Networks
birdcolors Create Palettes from the Colors of the World's
Birds
birddog Sniffing Emergence and Trajectories in Academic
Papers and Patents
birdie Bayesian Instrumental Regression for Disparity
Estimation
birdnetR Deep Learning for Automated (Bird) Sound
Identification
birdring Methods to Analyse Ring Re-Encounter Data
birdscanR Migration Traffic Rate Calculation Package for
'Birdscan MR1' Radars
birk MA Birk's Functions
birtr The R Package for "The Basics of Item Response
Theory Using R"
biscale Tools and Palettes for Bivariate Thematic
Mapping
bispdep Statistical Tools for Bivariate Spatial
Dependence Analysis
bit Classes and Methods for Fast Memory-Efficient
Boolean Selections
bit64 A S3 Class for Vectors of 64bit Integers
bitfield Handle Bitfields to Record Meta Data
bitmexr R Client for BitMEX
bitops Bitwise Operations
bitstreamio Read and Write Bits from Files, Connections and
Raw Vectors
bittermelon Bitmap Tools
bivarhr Bivariate Hurdle Regression with Bayesian Model
Averaging
bivariateLeaflet Create Bivariate Choropleth Maps with 'Leaflet'
bivariatemaps Creates Bivariate Maps
bivgeom Roy's Bivariate Geometric Distribution
bivpois Bivariate Poisson Distribution
bivrp Bivariate Residual Plots with Simulation
Polygons
biwavelet Conduct Univariate and Bivariate Wavelet
Analyses
biwt Compute the Biweight Mean Vector and Covariance
& Correlation Matrice
bizdays Business Days Calculations and Utilities
bizicount Bivariate Zero-Inflated Count Models Using
Copulas
bkmr Bayesian Kernel Machine Regression
bkmrhat Parallel Chain Tools for Bayesian Kernel
Machine Regression
blackbox Black Box Optimization and Exploration of
Parameter Space
blackmarbler Black Marble Data and Statistics
blaise Read and Write FWF Files in the 'Blaise' Format
blandr Bland-Altman Method Comparison
blapsr Bayesian Inference with Laplace Approximations
and P-Splines
blaster Native R Implementation of an Efficient
BLAST-Like Algorithm
blastula Easily Send HTML Email Messages
blatent Bayesian Latent Variable Models
blavaan Bayesian Latent Variable Analysis
blendR Blended Survival Curves
blends Blend Colours and Palettes
blindrecalc Blinded Sample Size Recalculation
blindspiker Laboratory Blind Spike Sample Analyses
blink Record Linkage for Empirically Motivated Priors
blisa Infer Cell-Cell Communication from Spatial
Transcriptomics
bliss Bayesian Functional Linear Regression with
Sparse Step Functions
blit Bioinformatics Library for Integrated Tools
blm Binomial Linear Regression
blme Bayesian Linear Mixed-Effects Models
blmeco Data Files and Functions Accompanying the Book
"Bayesian Data Analysis in Ecology using R,
BUGS and Stan"
blob A Simple S3 Class for Representing Vectors of
Binary Data ('BLOBS')
blockCV Spatial and Environmental Blocking for K-Fold
and LOO Cross-Validation
blockForest Block Forests: Random Forests for Blocks of
Clinical and Omics Covariate Data
blockTools Block, Assign, and Diagnose Potential
Interference in Randomized Experiments
blockedFF Generation of Blocked Fractional Factorial
Designs (Two-Level and Three-Level)
blocking Various Blocking Methods for Entity Resolution
blocklength Select an Optimal Block-Length to Bootstrap
Dependent Data (Block Bootstrap)
blockmatrix blockmatrix: Tools to solve algebraic systems
with partitioned matrices
blockmodeling Generalized and Classical Blockmodeling of
Valued Networks
blockmodels Latent and Stochastic Block Model Estimation by
a 'V-EM' Algorithm
blockr A Block-Based Framework for Data Manipulation
and Visualization
blockr.core Graphical Web-Framework for Data Manipulation
and Visualization
blockr.dag A Directed Acyclic Graph Extension for 'blockr'
blockr.dock A Docking Layout Manager for 'blockr'
blockr.dplyr Interactive 'dplyr' Data Transformation Blocks
blockr.ggplot Interactive 'ggplot2' Visualization Blocks
blockr.io Interactive File Import and Export Blocks
blockrand Randomization for Block Random Clinical Trials
blocksdesign Nested and Crossed Block Designs for Factorial
and Unstructured Treatment Sets
blockstrap Sample Dataframes by a Group
blocs Estimate and Visualize Voting Blocs' Partisan
Contributions
blogdown Create Blogs and Websites with R Markdown
blorr Tools for Developing Binary Logistic Regression
Models
blosc Compress and Decompress Data Using the 'BLOSC'
Library
blox Block Diagonal Matrix Approximation
blrm Dose Escalation Design in Phase I Oncology
Trial Using Bayesian Logistic Regression
Modeling
blsBandit Data Viewer for Bureau of Labor Statistics Data
blsR Make Requests from the Bureau of Labor
Statistics API
bluebike Blue Bike Comprehensive Data
bluster Clustering Algorithms for Bioconductor
blvim Boltzmann–Lotka–Volterra Interaction Model
bmabart Bayesian Mediation Analysis Using BART
bmass Bayesian Multivariate Analysis of Summary
Statistics
bmco Bayesian Analysis for Multivariate Categorical
Outcomes
bmem Mediation Analysis with Missing Data Using
Bootstrap
bmemLavaan Mediation Analysis with Missing Data and
Non-Normal Data
bmet Bayesian Multigroup Equivalence Testing
bmixture Bayesian Estimation for Finite Mixture of
Distributions
bml Bayesian Multiple-Membership Multilevel Models
with Parameterizable Weight Functions
bmm Easy and Accessible Bayesian Measurement Models
Using 'brms'
bmp Read Windows Bitmap (BMP) Images
bmstdr Bayesian Modeling of Spatio-Temporal Data with
R
bnRep A Repository of Bayesian Networks from the
Academic Literature
bnclassify Learning Discrete Bayesian Network Classifiers
from Data
bndovb Bounding Omitted Variable Bias Using Auxiliary
Data
bnlearn Bayesian Network Structure Learning, Parameter
Learning and Inference
bnma Bayesian Network Meta-Analysis using 'JAGS'
bnmonitor An Implementation of Sensitivity Analysis in
Bayesian Networks
bnnSurvival Bagged k-Nearest Neighbors Survival Prediction
bnns Bayesian Neural Network with 'Stan'
bnpMTP Bayesian Nonparametric Sensitivity Analysis of
Multiple Testing Procedures for p Values
bnpa Bayesian Networks & Path Analysis
bnpsd Simulate Genotypes from the BN-PSD Admixture
Model
bnstruct Bayesian Network Structure Learning from Data
with Missing Values
bnviewer Bayesian Networks Interactive Visualization and
Explainable Artificial Intelligence
boa Bayesian Output Analysis Program (BOA) for MCMC
bodenmiller Profiling of Peripheral Blood Mononuclear Cells
using CyTOF
bodsr Call the Bus Open Data Service ('BODS') API
Through R
bodycomp Percent Body Fat Values Using Anthropometric
Prediction Equations
bodycompref Reference Values for CT-Assessed Body
Composition
boe Download Data from the 'Bank of England'
Statistical Database
boggy Real-Time PCR Data Sets by Boggy et al. (2010)
boids4R Reynolds-Style Boids and Swarm Simulation
boilerpipeR Interface to the Boilerpipe Java Library
boilerplate Managing and Compiling Manuscript Templates
boinet Conduct Simulation Study of Bayesian Optimal
Interval Design with BOIN-ET Family
boiwsa Seasonal Adjustment of Weekly Data
bolasso Model Consistent Lasso Estimation Through the
Bootstrap
bolder 'RStudio' Add-Ins for Formatted Section Titles
bolsec Bolivian Securities
bolt4jr Interface for the 'Neo4j Bolt' Protocol
bondAnalyst Methods for Fixed-Income Valuation, Risk and
Return
bonn Access INKAR Database
bonsai Model Wrappers for Tree-Based Models
bonsaiforest Shrinkage Based Forest Plots
booami Component-Wise Gradient Boosting after Multiple
Imputation
boodd Functions for the Book "Bootstrap for Dependent
Data, with an R Package"
boodist Some Distributions from the 'Boost' Library and
More
bookdown Authoring Books and Technical Documents with R
Markdown
booklet Multivariate Exploratory Data Analysis
boostingDEA A Boosting Approach to Data Envelopment
Analysis
boostmath 'R' Bindings for the 'Boost' Math Functions
boostmtree Boosted Multivariate Trees for Longitudinal
Data
boostrq Boosting Regression Quantiles
boot.heterogeneity A Bootstrap-Based Heterogeneity Test for
Meta-Analysis
boot.pval Bootstrap p-Values
bootCT Bootstrapping the ARDL Tests for Cointegration
bootComb Combine Parameter Estimates via Parametric
Bootstrap
bootES Bootstrap Confidence Intervals on Effect Sizes
bootGOF Bootstrap Based Goodness-of-Fit Tests
bootImpute Bootstrap Inference for Multiple Imputation
bootLR Bootstrapped Confidence Intervals for
(Negative) Likelihood Ratio Tests
bootLRTpairwise Bootstrap Hypothesis Tests for Treatment
Effects in One-Way ANOVA with Unequal Variances
bootPLS Bootstrap Hyperparameter Selection for PLS
Models and Extensions
bootSVD Fast, Exact Bootstrap Principal Component
Analysis for High Dimensional Data
bootStateSpace Bootstrap for State Space Models
bootStepAIC Bootstrap stepAIC
bootUR Bootstrap Unit Root Tests
bootcluster Bootstrapping Estimates of Clustering Stability
bootf2 Simulation and Comparison of Dissolution
Profiles
bootkmeans A Bootstrap Augmented k-Means Algorithm for
Fuzzy Partitions
bootmlm Bootstrap Resampling for Multilevel Models
bootnet Bootstrap Methods for Various Network
Estimation Routines
bootruin A Bootstrap Test for the Probability of Ruin in
the Classical Risk Process
bootstrap Functions for the Book "An Introduction to the
Bootstrap"
bootstrapFP Bootstrap Algorithms for Finite Population
Inference
bootsurv Bootstrap Methods for Complete Survey Data
bootwar Nonparametric Bootstrap Test with Pooled
Resampling Card Game
boral Bayesian Ordination and Regression AnaLysis
borrowr Estimate Causal Effects with Borrowing Between
Data Sources
bosfr Computes Exact Bounds of Spearman's Footrule
with Missing Data
bossR Biomarker Optimal Segmentation System
botor 'AWS Python SDK' ('boto3') for R
boundedur Unit Root Tests for Bounded Time Series
boundingbox Create a Bounding Box in an Image
boussinesq Analytic Solutions for (Ground-Water)
Boussinesq Equation
boutliers Outlier Detection and Influence Diagnostics for
Meta-Analysis
box Write Reusable, Composable and Modular R Code
box.linters Linters for 'box' Modules
box.lsp Provides 'box' Compatibility for
'languageserver'
boxTest Boxplot and Significance Test for Two Groups
boxcoxmix Box-Cox-Type Transformations for Linear and
Logistic Models with Random Effects
boxfilter Filter Noisy Data
boxly Interactive Box Plot
boxplotcluster Clustering Method Based on Boxplot Statistics
boxplotdbl Double Box Plot for Two-Axes Correlation
boxr Interface for the 'Box.com API'
bp Blood Pressure Analysis in R
bpAcc Blood Pressure Device Accuracy Evaluation:
Statistical Considerations
bpDir Boxplots for Directional Data
bpa Basic Pattern Analysis
bpbounds Nonparametric Bounds for the Average Causal
Effect Due to Balke and Pearl and Extensions
bpca Biplot Analysis for Multivariate Data Using
Principal Components
bpcp Beta Product Confidence Procedure for Right
Censored Data
bpgmm Bayesian Model Selection Approach for
Parsimonious Gaussian Mixture Models
bplsr Bayesian partial least squares regression
bpmnVisualizationR Visualize Process Execution Data on 'BPMN'
Diagrams
bpnreg Bayesian Projected Normal Regression Models for
Circular Data
bpp Computations Around Bayesian Predictive Power
bpr Fitting Bayesian Poisson Regression
bptips Server Earnings Calculations
bpvars Forecasting with Bayesian Panel Vector
Autoregressions
bqror Bayesian Quantile Regression for Ordinal Models
bqtl Bayesian QTL Mapping Toolkit
braQCA Bootstrapped Robustness Assessment for
Qualitative Comparative Analysis
bracer Brace Expansions
bracketeer Tournament Generator
brada Bayesian Response-Adaptive Design Analysis
braggR Calculate the Revealed Aggregator of
Probability Predictions
braidReports Visualize Combined Action Response Surfaces and
Report BRAID Analyses
braidrm Fitting Combined Action with the BRAID Response
Surface Model
braids The Braid Groups
brainGraph Graph Theory Analysis of Brain MRI Data
brainKCCA Region-Level Connectivity Network Construction
via Kernel Canonical Correlation Analysis
brainR Helper Functions to 'misc3d' and 'rgl' Packages
for Brain Imaging
branchingprocess Calculate Outbreak Probabilities for a
Branching Process Model
brand.yml Unified Branding with a Simple YAML File
brandr Brand Identity Management Using brand.yml
Standard
brandwatchR 'Brandwatch' API to R
brant Test for Parallel Regression Assumption
brar Null Hypothesis Bayesian Response-Adaptive
Randomization
brassica 1970s BASIC Interpreter
bravo Bayesian Screening and Variable Selection
brclimr Fetch Zonal Statistics of Weather Indicators
for Brazilian Municipalities
brea Bayesian Recurrent Events Analysis
bread Analyze Big Files Without Loading Them in
Memory
breakDown Model Agnostic Explainers for Individual
Predictions
breakaway Species Richness Estimation and Modeling
breakfast Methods for Fast Multiple
Change-Point/Break-Point Detection and
Estimation
breathtestcore Core Functions to Read and Fit 13c Time Series
from Breath Tests
breathteststan Stan-Based Fit to Gastric Emptying Curves
bregr Easy and Efficient Batch Processing of
Regression Models
brew Templating Framework for Report Generation
brfinance Access to Brazilian Macroeconomic and Financial
Time Series
brglm Bias Reduction in Binomial-Response Generalized
Linear Models
brglm2 Bias Reduction in Generalized Linear Models
briKmeans Package for Brik, Fabrik and Fdebrik Algorithms
to Initialise Kmeans
brickset Interface with the Brickset API for Getting
Data About LEGO Sets
brickster R Toolkit for 'Databricks'
bridgedist An Implementation of the Bridge Distribution
with Logit-Link as in Wang and Louis (2003)
bridger2 Genome-Wide RNA Degradation Analysis Using
BRIC-Seq Data
bridgesampling Bridge Sampling for Marginal Likelihoods and
Bayes Factors
bridgr Bridging Data Frequencies for Timely Economic
Forecasts
brif A Tree and Forest Tool for Classification and
Regression
brightspaceR Access D2L 'Brightspace' Data Sets via the
'BDS' API
brinton A Graphical EDA Tool
brio Basic R Input Output
briqr Interface to the 'Briq' API
brisk Bayesian Benefit Risk Analysis
brm Binary Regression Model
brms Bayesian Regression Models using 'Stan'
brms.mmrm Bayesian MMRMs using 'brms'
brmsmargins Bayesian Marginal Effects for 'brms' Models
brnn Bayesian Regularization for Feed-Forward Neural
Networks
broadcast Broadcasted Array Operations Like 'NumPy'
brokenstick Broken Stick Model for Irregular Longitudinal
Data
brolgar Browse Over Longitudinal Data Graphically and
Analytically in R
broman Karl Broman's R Code
broom Convert Statistical Objects into Tidy Tibbles
broom.helpers Helpers for Model Coefficients Tibbles
broom.mixed Tidying Methods for Mixed Models
brotli A Compression Format Optimized for the Web
brsim Brainerd-Robinson Similarity Coefficient Matrix
bruceR Broadly Useful Convenient and Efficient R
Functions
brulee High-Level Modeling Functions with 'torch'
bruneimap Maps and Spatial Data of Brunei
brunnermunzel (Permuted) Brunner-Munzel Test
brxx Bayesian Test Reliability Estimation
bs4Dash A 'Bootstrap 4' Version of 'shinydashboard'
bs4Dashkit Branding, Theme Application and Navigation
Utilities for 'bs4Dash' Dashboards
bs4cards Generate Bootstrap Cards
bsTools Create HTML Content with Bootstrap 5 Classes
and Layouts
bsamGP Bayesian Spectral Analysis Models using
Gaussian Process Priors
bscui Build SVG Custom User Interface
bsearchtools Binary Search Tools
bsgof Birnbaum-Saunders Goodness-of-Fit Test
bshazard Nonparametric Smoothing of the Hazard Function
bsicons Easily Work with 'Bootstrap' Icons
bsitar Bayesian Super Imposition by Translation and
Rotation Growth Curve Analysis
bskyr Interact with 'Bluesky' Social
bslib Custom 'Bootstrap' 'Sass' Themes for 'shiny'
and 'rmarkdown'
bsnsing Build Decision Trees with Optimal Multivariate
Splits
bsocialv2 Analysis of Microbial Social Behavior in
Bacterial Consortia
bspcov Bayesian Sparse Estimation of a Covariance
Matrix
bspec Bayesian Spectral Inference
bspline B-Spline Interpolation and Regression
bsplus Adds Functionality to the R Markdown + Shiny
Bootstrap Framework
bspm Bridge to System Package Manager
bsreg Bayesian Spatial Regression Models
bssbinom Bayesian Sample Size for Binomial Proportions
bsseq Analyze, manage and store whole-genome
methylation data
bssm Bayesian Inference of Non-Linear and
Non-Gaussian State Space Models
bst Gradient Boosting
bstrl Bayesian Streaming Record Linkage
bsts Bayesian Structural Time Series
bsub Submitter and Monitor of the 'LSF Cluster'
bsvarSIGNs Bayesian SVARs with Sign, Zero, and Narrative
Restrictions
bsvars Bayesian Estimation of Structural Vector
Autoregressive Models
bsynth Bayesian Synthetic Control
btb Beyond the Border - Kernel Density Estimation
for Urban Geography
btergm Temporal Exponential Random Graph Models by
Bootstrapped Pseudolikelihood
btml Bayesian Treed Machine Learning for
Personalized Prediction
btrm Bayesian Treed Regression Model for
Personalized Prediction and Precision
Diagnostics
btw A Toolkit for Connecting R and Large Language
Models
bubbleHeatmap Produces 'bubbleHeatmap' Plots for Visualising
Metabolomics Data
bubblyr Beautiful Bubbles for 'shiny' and 'rmarkdown'
Backgrounds
budgetIVr Partial Identification of Causal Effects with
Mostly Invalid Instruments
buildmer Stepwise Elimination and Term Reordering for
Mixed-Effects Regression
buildr Organize & Run Build Scripts Comfortably
bujar Buckley-James Regression for Survival Data with
High-Dimensional Covariates
bulkQC Quality Control and Outlier Identification in
Bulk for Multicenter Trials
bulkreadr The Ultimate Tool for Reading Data in Bulk
bulletcp Automatic Groove Identification via Bayesian
Changepoint Detection
bullishTrader Bullish Trading Strategies Through Graphs
bullseye Visualising Multiple Pairwise Variable
Correlations and Other Scores
bullwhipgame Bullwhip Effect Demo in Shiny
bumbl Tools for Modeling Bumblebee Colony Growth and
Decline
bumblebee Quantify Disease Transmission Within and
Between Population Groups
bumphunter Bump Hunter
bunching Estimate Bunching
bunchr Analyze Bunching in a Kink or Notch Setting
bunddev Discover and Call 'Bund.dev' APIs
bundesbank Download Data from Bundesbank
bundesligR All Final Tables of the Bundesliga
bundle Serialize Model Objects with a Consistent
Interface
bunsen Marginal Survival Estimation with Covariate
Adjustment
buoyant Deploy '_server.yml' Compliant Applications to
'DigitalOcean'
bupaR Business Process Analysis in R
burgle 'Burgle': Stealing the Necessary Parts of Model
Objects
burnr Forest Fire History Analysis
bursa R Wrapper for Bursa Municipality Open Data
Portal
bursts Markov Model for Bursty Behavior in Streams
busdater Standard Date Calculations for Business
bushtucker 'I'm a Celebrity Get Me Out of Here' Data
businessPlanR Simple Modelling Tools for Business Plans
butcher Model Butcher
butterfly Verification for Continually Updating Time
Series Data
butterflyOptions Trading Butterfly Options Strategies
buzzMed Bayesian Understanding for Mediator Selection
Framework
bvarnet Bayesian Estimation of Dynamic VAR Models using
STAN
bvars Bayesian Forecasting with Large Vector
Autoregressions
bvarsv Bayesian Analysis of a Vector Autoregressive
Model with Stochastic Volatility and
Time-Varying Parameters
bvartools Bayesian Inference of Vector Autoregressive and
Error Correction Models
bvhar Bayesian Vector Heterogeneous Autoregressive
Modeling
bvls The Stark-Parker algorithm for bounded-variable
least squares
bvpa Bivariate Pareto Distribution
bwd Backward Procedure for Change-Point Detection
bwimage Describe Image Patterns in Natural Structures
bws Bayesian Weighted Sums
bysykkel Get City Bike Data from Norway
bytescircle Statistics About Bytes Contained in a File as a
Circle Plot
bzinb Bivariate Zero-Inflated Negative Binomial Model
Estimator
c060 Extended Inference for Lasso and Elastic-Net
Regularized Cox and Generalized Linear Models
c212 Methods for Detecting Safety Signals in
Clinical Trials Using Body-Systems (System
Organ Classes)
c2c Compare Two Classifications or Clustering
Solutions of Varying Structure
c2z A Reference Manager
c3 'C3.js' Chart Library
c3dr Read and Write C3D Motion Capture Files
c3net Inferring Large-Scale Gene Networks with C3NET
cABCanalysis Computed ABC Analysis
cAIC4 Conditional Akaike Information Criterion for
'lme4' and 'nlme'
cIRT Choice Item Response Theory
cNORM Continuous Norming
cOde Automated C Code Generation for 'deSolve',
'bvpSolve'
cPseudoMaRg Constructs a Correlated Pseudo-Marginal Sampler
cSEM Composite-Based Structural Equation Modeling
cTMed Continuous-Time Mediation
cTOST Finite Sample Correction of the Two One-Sided
Tests in the Univariate Framework
ca Simple, Multiple and Joint Correspondence
Analysis
caROC Continuous Biomarker Evaluation with Adjustment
of Covariates
caRamel Automatic Calibration by Evolutionary Multi
Objective Algorithm
caRecall Government of Canada Vehicle Recalls Database
API Wrapper
caTools Tools: Moving Window Statistics, GIF, Base64,
ROC AUC, etc
cabinets Project Specific Workspace Organization
Templates
cabootcrs Bootstrap Confidence Regions for Simple and
Multiple Correspondence Analysis
cacIRT Classification Accuracy and Consistency under
Item Response Theory
cacc Conjunctive Analysis of Case Configurations
cache Cache and Retrieve Computation Results
cachem Cache R Objects with Automatic Pruning
caesar Encrypts and Decrypts Strings
caffsim Simulation of Plasma Caffeine Concentrations by
Using Population Pharmacokinetic Model
calACS Calculations for All Common Subsequences
calba Efficient Neighborhood Basal Area Metrics for
Trees
calcUnique Simple Wrapper for Computationally Expensive
Functions
calcal Calendrical Calculations
calcite Bindings to the Calcite Design System
'JavaScript' Component Library
calculus High Dimensional Numerical and Symbolic
Calculus
calendR Ready to Print Monthly and Yearly Calendars
Made with 'ggplot2'
calendRio 'calendR' Fork with Additional Features
(Backwards Compatible)
calendar Create, Read, Write, and Work with 'iCalendar'
Files, Calendars and Scheduling Data
calibmsm Calibration Plots for the Transition
Probabilities from Multistate Models
calibrar Automated Parameter Estimation for Complex
Models
calibrate Calibration of Scatterplot and Biplot Axes
calibrateBinary Calibration for Computer Experiments with
Binary Responses
calibrationband Calibration Bands
calibrator Bayesian Calibration of Complex Computer Codes
calidad Assesses the Quality of Estimates Made by
Complex Sample Designs
callback Computes Statistics from Discrimination
Experimental Data
callme Easily Compile and Call Inline 'C' Functions
callr Call R from R
callsync Recording Synchronisation, Call Detection and
Assignment, Audio Analysis
calmate Improved Allele-Specific Copy Number of SNP
Microarrays for Downstream Segmentation
calmr Canonical Associative Learning Models and their
Representations
calms Comprehensive Analysis of Latent Means
calpassapi R Interface to Access CalPASS API
camcorder Record Your Plot History
camerondata Datasets from "Microeconometrics: Methods and
Applications" by Cameron and Trivedi
campaignmanageR Connect to Campaign Manager via the
'Windsor.ai' API
campfin Wrangle Campaign Finance Data
campsis Generic PK/PD Simulation Platform Campsis
campsismod Generic Implementation of a PK/PD Model
camsRad Client for CAMS Radiation Service
camtrapR Camera Trap Data Management and Analysis
Framework
camtrapdp Read and Manipulate Camera Trap Data Packages
canadamaps Maps of the Political and Administrative
Divisions of Canada
canadianmaps Effortlessly Create Stunning Canadian Maps
canaper Categorical Analysis of Neo- And Paleo-Endemism
cancensus Access, Retrieve, and Work with Canadian Census
Data and Geography
cancerGI Analyses of Cancer Gene Interaction
cancerR Classification of Cancer Using Administrative
Data
cancerradarr Cancer RADAR Project Tool
candisc Visualizing Generalized Canonical Discriminant
and Canonical Correlation Analysis
canprot Chemical Analysis of Proteins
cansim Accessing Statistics Canada Data Table and
Vectors
canvasXpress Visualization Package for CanvasXpress in R
canvasXpress.data Datasets for the 'canvasXpress' Package
caper Comparative Analyses of Phylogenetics and
Evolution in R
capesData Data on Scholarships in CAPES International
Mobility Programs
capesR Access to CAPES Data
capitalR Capital Budgeting Analysis, Annuity Loan
Calculations and Amortization Schedules
capl Compute and Visualize CAPL-2 Scores and
Interpretations
caplot Correspondence Analysis with Geometric
Frequency Interpretation
capr Covariate Assisted Principal Regression
captain Running 'git' Pre-Commit Hooks
capushe Capushe, Data-Driven Slope Estimation and
Dimension Jump
capybara Fast and Memory Efficient Fitting of Linear
Models with High-Dimensional Fixed Effects
car Companion to Applied Regression
carData Companion to Applied Regression Data Sets
carSurv Correlation-Adjusted Regression Survival (CARS)
Scores
caracas Computer Algebra
caradpt Covariate-Adjusted Response-Adaptive Designs
for Clinical Trials
carat Covariate-Adaptive Randomization for Clinical
Trials
carbondata Access Carbon Market Data from Emissions
Trading Systems and Voluntary Registries
carbondate Calibration and Summarisation of Radiocarbon
Dates
carbonpredict Predict Carbon Emissions for UK SMEs
carbonr Calculate Carbon-Equivalent Emissions
carcass Estimation of the Number of Fatalities from
Carcass Searches
card Cardiovascular Applications in Research Data
card.pro Lightweight Modern & Responsive Card Component
for 'shiny'
cardargus Generate SVG Information Cards with Embedded
Fonts and Badges
cardidates Identification of Cardinal Dates in Ecological
Time Series
cardinalR Collection of Data Structures
cards Analysis Results Data
cardx Extra Analysis Results Data Utilities
care High-Dimensional Regression and CAR Score
Variable Selection
care4cmodel Carbon-Related Assessment of Silvicultural
Concepts
careless Procedures for Computing Indices of Careless
Responding
caresid Correspondence Analysis Plot and Associations
Visualisation
caret Classification and Regression Training
caretEnsemble Ensembles of Caret Models
caretForecast Conformal Time Series Forecasting Using State
of Art Machine Learning Algorithms
caretSDM Build Species Distribution Modeling using
'caret'
carfima Continuous-Time Fractionally Integrated ARMA
Process for Irregularly Spaced Long-Memory Time
Series Data
cargo Develop R Packages using Rust
caribou Estimation of Caribou Abundance Based on Radio
Telemetry Data
caroline A Collection of Database, Data Structure,
Visualization, and Utility Functions for R
carpenter Build Common Tables of Summary Statistics for
Reports
carrier Isolate Functions for Remote Execution
carsAlgo Competitive Adaptive Reweighted Sampling (CARS)
Algorithm
cartograflow Filtering Matrix for Flow Mapping
cartogram Create Cartograms with R
cartogramR Continuous Cartogram
cartographer Turn Place Names into Map Data
cartographr Crafting Print-Ready Maps and Layered
Visualizations
cartography Thematic Cartography
carts Simulation-Based Assessment of Covariate
Adjustment in Randomized Trials
cascadeSelect A Cascade Select Input for 'Shiny'
cascadess A Style Pronoun for 'htmltools' Tags
cascsim Casualty Actuarial Society Individual Claim
Simulator
caseMatch Identify Similar Cases for Qualitative Case
Studies
casebase Fitting Flexible Smooth-in-Time Hazards and
Risk Functions via Logistic and Multinomial
Regression
cases Stratified Evaluation of Subgroup
Classification Accuracy
cash Discrete Choice and Competitive Reactions:
End-to-End Simulation
casimir Comparing Automated Subject Indexing Methods in
R
cassandRa Finds Missing Links and Metric Confidence
Intervals in Ecological Bipartite Networks
cassowaryr Compute Scagnostics on Pairs of Numeric
Variables in a Data Set
castgen Estimate Sample Size for Population Genomic
Studies
castor Efficient Phylogenetics on Large Trees
cat Analysis and Imputation of Categorical-Variable
Datasets with Missing Values
cat2cat Handling an Inconsistently Coded Categorical
Variable in a Longitudinal Dataset
catIrt Simulate IRT-Based Computerized Adaptive Tests
catR Generation of IRT Response Patterns under
Computerized Adaptive Testing
catSurv Computerized Adaptive Testing for Survey
Research
cata Analysis of Check-All-that-Apply (CATA) Data
catalog Access the 'Spark Catalog' API via 'sparklyr'
catalytic Tools for Applying Catalytic Priors in
Statistical Modeling
catch Covariate-Adjusted Tensor Classification in
High-Dimensions
catcont Test, Identify, Select and Mutate Categorical
or Continuous Values
catdap Categorical Data Analysis Program Package
catdata Categorical Data
categoryEncodings Category Variable Encodings
catekappa Design and Analysis of Consistency Tests Based
on Kappa Statistic
catfun Categorical Data Analysis
cati Community Assembly by Traits: Individuals and
Beyond
catlearn Formal Psychological Models of Categorization
and Learning
catmaply Heatmap for Categorical Data using 'plotly'
catool Compensation Analysis Tool for Instructor
Overload Pay
catregs Post-Estimation Functions for Generalized
Linear Mixed Models
cats Cohort Platform Trial Simulation
catseyes Create Catseye Plots Illustrating the Normal
Distribution of the Means
catsim Binary and Categorical Image Similarity Index
catviz Visualizing Causal Assignment Trees for CSDiD
and DR-DDD Designs
cauchypca Robust Principal Component Analysis Using the
Cauchy Distribution
caugi Causal Graph Interface
cauphy Trait Evolution on Phylogenies Using the Cauchy
Process
causact Fast, Easy, and Visual Bayesian Inference
causal.decomp Causal Decomposition Analysis
causalBatch Causal Batch Effects
causalCmprsk Nonparametric and Cox-Based Estimation of
Average Treatment Effects in Competing Risks
causalDT Causal Distillation Trees
causalDisco Tools for Causal Discovery on Observational
Data
causalHyperGraph Drawing Causal Hypergraphs
causalOT Optimal Transport Weights for Causal Inference
causalPAF Causal Effect for Population Attributable
Fractions (PAF)
causalQual Causal Inference for Qualitative Outcomes
causalSLSE Semiparametric Least Squares Inference for
Causal Effects
causalWins Compute the Causal Win Ratio Using Nearest
Neighbor Matching
causaldata Example Data Sets for Causal Inference
Textbooks
causaldef Decision-Theoretic Causal Diagnostics via Le
Cam Deficiency
causaldrf Estimating Causal Dose Response Functions
causaleffect Deriving Expressions of Joint Interventional
Distributions and Transport Formulas in Causal
Models
causalfrag Cross-Framework Causal Fragility Index
causalnet Directed Causal Network Enumeration and
Simulation
causaloptim An Interface to Specify Causal Graphs and
Compute Bounds on Causal Effects
causalplot Create Publication-Ready Causal Diagrams
causalreg Causal Generalized Linear Models
causalsens Selection Bias Approach to Sensitivity Analysis
for Causal Effects
causalweight Estimation Methods for Causal Inference Based
on Inverse Probability Weighting and Doubly
Robust Estimation
causens Perform Causal Sensitivity Analyses Using
Various Statistical Methods
caustests Multiple Granger Causality Tests for Time
Series and Panel Data
caviarpd Cluster Analysis via Random Partition
Distributions
cayleyR Cayley Graph Analysis for Permutation Puzzles
cba Clustering for Business Analytics
cbanalysis Coffee Break Descriptive Analysis
cbass Classification -- Bayesian Adaptive Smoothing
Splines
cbbinom Continuous Analog of a Beta-Binomial
Distribution
cbcTools Design and Analyze Choice-Based Conjoint
Experiments
cbinom Continuous Analog of a Binomial Distribution
cbioportalR Browse and Query Clinical and Genomic Data from
cBioPortal
cbl Causal Discovery under a Confounder Blanket
cbsREPS Hedonic and Multilateral Index Methods for Real
Estate Price Statistics
cbsodataR Statistics Netherlands (CBS) Open Data API
Client
ccLRforR Case-Control Likelihood Ratio (ccLR)
ccRemover Removes the Cell-Cycle Effect from Single-Cell
RNA-Sequencing Data
ccTensor CUR/CX Tensor Decomposition
ccaPP (Robust) Canonical Correlation Analysis via
Projection Pursuit
ccar3 Canonical Correlation Analysis via Reduced Rank
Regression
cccd Class Cover Catch Digraphs
cccm Crossed Classification Credibility Model
cccp Cone Constrained Convex Problems
cccrm Concordance Correlation Coefficient for
Repeated (and Non-Repeated) Measures
ccdR Utilities for Interacting with the 'CTX' APIs
cchs Cox Model for Case-Cohort Data with Stratified
Subcohort-Selection
cchsflow Transforming and Harmonizing CCHS Variables
ccid Cross-Covariance Isolate Detect: a New
Change-Point Method for Estimating Dynamic
Functional Connectivity
cclust Convex Clustering Methods and Clustering
Indexes
cclustr Consensus Clustering Methods for Multiple
Imputed Data
ccmEstimator Comparative Causal Mediation Estimation
ccmReportR Wraps 'CCM' with Utility Functions
ccoptimalmatch Implementation of Case-Control Optimal Matching
ccostr Estimation of Mean Costs in Censored Data
ccpsyc Methods for Cross-Cultural Psychology
ccrtm Coupled Chain Radiative Transfer Models
ccss Cluster Circular Systematic Sampling
cctest Canonical Correlations and Tests of
Independence
cctools Tools for the Continuous Convolution Trick in
Nonparametric Estimation
cd CD Data for Entity Resolution
cdCAT Computerized Adaptive Testing with Cognitive
Diagnostic Models
cdata Fluid Data Transformations
cdcanthro Sex- and Age-Standardized Metrics from the
Centers for Disease Control and Prevention
(CDC) Growth Charts
cdcatR Cognitive Diagnostic Computerized Adaptive
Testing
cdcsis Conditional Distance Correlation Based Feature
Screening and Conditional Independence
Inference
cder Interface to the California Data Exchange
Center (CDEC)
cdfinv Confidence Interval Estimation via CDF
Inversion
cdfquantreg Quantile Regression for Random Variables on the
Unit Interval
cdgd Causal Decomposition of Group Disparities
cdiWG2WS Words and Gestures to Words and Sentences Score
Conversion
cdid The Chained Difference-in-Differences
cdlTools Tools to Download and Work with USDA Cropscape
Data
cdlei Cause-Deleted Life Expectancy Improvement
Procedure
cdlsim Simulation of Cropland Data Layer Products from
the USDA
cdmTools Useful Tools for Cognitive Diagnosis Modeling
cdnbcr Correlated Destructive Negative Binomial Cure
Rate Model
cdom R Functions to Model CDOM Spectra
cdparcoord Top Frequency-Based Parallel Coordinates
cdrcR Load 'CDRC' Data
ceRtainty Certainty Equivalent
ceas Cellular Energetics Analysis Software
ceblR Extract Data from the Canadian Elite Basketball
League
celestial Collection of Common Astronomical Conversion
Routines and Functions
cellGeometry Geometric Single Cell Deconvolution
cellKey Consistent Perturbation of Statistical
Frequency- And Magnitude Tables
cellOrigins Finds RNASeq Source Tissues Using In Situ
Hybridisation Data
cellVolumeDist Functions to Fit Cell Volume Distributions and
Thereby Estimate Cell Growth Rates and Division
Times
cellWise Analyzing Data with Cellwise Outliers
cellkeyperturbation Cell Key Perturbation
cellranger Translate Spreadsheet Cell Ranges to Rows and
Columns
celltrackR Motion Trajectory Analysis
cem Coarsened Exact Matching
cemco Fit 'CemCO' Algorithm
cenGAM Censored Regression with Smooth Terms
cenROC Estimating Time-Dependent ROC Curve and AUC for
Censored Data
cencrne Consistent Estimation of the Number of
Communities via Regularized Network Embedding
censReg Censored Regression (Tobit) Models
censable Making Census Data More Usable
censo2022arg Extraction and Analysis of 2022 Argentina
Census Microdata from REDATAM Databases
censobr Download Data from Brazil's Population Census
censorcopula Estimate Parameter of Bivariate Copula
censored 'parsnip' Engines for Survival Models
censoredAIDS Estimation of Censored AI/QUAI Demand System
via Maximum Likelihood Estimation (MLE)
censusapi Retrieve Data from the Census APIs
censuspyrID Explorer of Indonesian Population Pyramids from
Harmonized and Non-Harmonized Census Data
centerline Extract Centerline from Closed Polygons
centiserve Find Graph Centrality Indices
centr Weighted and Unweighted Spatial Centers
centrifugeR Non-Trivial Balance of Centrifuge Rotors
cepR Busca CEPs Brasileiros
cepiigeodist CEPII's GeoDist Datasets
cepiweek Continuous Epidemiological Week Indexing for
Time-Series Analysis
cepp Context Driven Exploratory Projection Pursuit
cepreader Read 'CEP' and Legacy 'CANOCO' Files
cepumd Calculate Consumer Expenditure Survey (CE)
Annual Estimates
cequre Censored Quantile Regression &
Monotonicity-Respecting Restoring
cer Download and Tidy Australian Clean Energy
Regulator Data
ceramic Download Online Imagery Tiles
cercospoRa Process Based Epidemiological Model for
Cercospora Leaf Spot of Sugar Beet
cereal Serialize 'vctrs' Objects to 'JSON'
certify Generate Branded PDF Certificates
ces Access to Canadian Election Study Data
ceser Cluster Estimated Standard Errors
cetcolor CET Perceptually Uniform Colour Maps
ceterisParibus Ceteris Paribus Profiles
cfa Configural Frequency Analysis (CFA)
cfbfastR Access College Football Play by Play Data
cfda Categorical Functional Data Analysis
cfdecomp Counterfactual Decomposition: MC Integration of
the G-Formula
cffdrs Canadian Forest Fire Danger Rating System
cffr Generate Citation File Format ('CFF') Metadata
for R Packages
cfid Identification of Counterfactual Queries in
Causal Models
cfmortality Cystic Fibrosis Survival Prediction Model Based
on Stanojevic Model
cforecast Conditional Forecasting and Scenario Analysis
Using VAR Models
cforward Forward Selection using Concordance/C-Index
cfr Estimate Disease Severity and Case
Ascertainment
cft Climate Futures Toolbox
cg Compare Groups, Analytically and Graphically
cgAUC Calculate AUC-type measure when gold standard
is continuous and the corresponding optimal
linear combination of variables with respect to
it.
cgaim Constrained Groupwise Additive Index Models
cgal4h 'CGAL' Version 4 C++ Header Files
cgam Constrained Generalized Additive Model
cglasso Conditional Graphical LASSO for Gaussian
Graphical Models with Censored and Missing
Values
cgmanalysis Clean and Analyze Continuous Glucose Monitor
Data
cgmguru Advanced Continuous Glucose Monitoring Analysis
with High-Performance C++ Backend
cgmquantify Analyzing Glucose and Glucose Variability
cgvR Interactive 3D Visualization of Large Cayley
Graphs via Vulkan
cgwtools Miscellaneous Tools
chainbinomial Chain Binomial Models for Analysis of
Infectious Disease Data
chameleon Automatic Colors for Multi-Dimensional Data
chandwich Chandler-Bate Sandwich Loglikelihood Adjustment
changeS S-Curve Fit for Changepoint Analysis
changepoint Methods for Changepoint Detection
changepoint.geo Geometrically Inspired Multivariate Changepoint
Detection
changepoint.influence Package to Calculate the Influence of the Data
on a Changepoint Segmentation
changepoint.np Methods for Nonparametric Changepoint Detection
changepointGA Changepoint Detection via Modified Genetic
Algorithms
changepointTests Change Point Tests for Joint Distributions and
Copulas
changepoints A Collection of Change-Point Detection Methods
changepointsVar Change-Points Detections for Changes in
Variance
changer Change R Package Name
chantrics Loglikelihood Adjustments for Econometric
Models
chapensk Estimation of Gas Properties from the
Lennard-Jones Potential
charcuterie Handle Strings as Vectors of Characters
charisma Reproducible Color Characterization of Digital
Images for Biological Studies
charlatan Make Fake Data
charlesschwabapi Wrapper Functions Around 'Charles Schwab
Individual Trader API'
chartql Simplified Language for Plots and Charts
chartreview Adaptive Multi-Wave Sampling for Efficient
Chart Validation
chatAI4R Chat-Based Interactive Artificial Intelligence
for R
chatLLM A Flexible Interface for 'LLM' API Interactions
chatRater A Tool for Rating Text/Image/Audio Stimuli via
'LLMs'
chatgpt Interface to 'ChatGPT' from R
chattr Interact with Large Language Models in
'RStudio'
chcd Access Canadian Historical Climate Data
cheapr Simple Functions to Save Time and Memory
cheatsheet Download R Cheat Sheets Locally
checkCLI 'CLI' Messages for Checkmate Assertions and
Checks
checkLuhn Checks if a Number is Valid Using the Luhn
Algorithm
checkarg Check the Basic Validity of a (Function)
Argument
checkdown Check-Fields and Check-Boxes for 'rmarkdown'
checked Systematically Run R CMD Checks
checker Checks 'R' Configuration Set Up Correctly
Before Class
checkglobals Static Analysis of R-Code Dependencies
checkhelper Deal with Check Outputs
checkmate Fast and Versatile Argument Checks
checkstring Common String Format Validation
checkthat Intuitive Unit Testing Tools for Data
Manipulation
cheddar Analysis and Visualisation of Ecological
Communities
cheem Interactively Explore Local Explanations with
the Radial Tour
cheese Tools for Working with Data During Statistical
Analysis
cheetahR High Performance Tables Using 'Cheetah Grid'
chem.databases Collection of 3 Chemical Databases from Public
Sources
chem16S Chemical Metrics for Microbial Communities
chemCal Calibration Functions for Analytical Chemistry
chemdeg Analysis of Chemical Degradation Kinetic Data
chemodiv Analysing Chemodiversity of Phytochemical Data
chemometrics Multivariate Statistical Analysis in
Chemometrics
cherry Multiple Testing Methods for Exploratory
Research
cherryblossom Cherry Blossom Run Race Results
chess Read, Write, Create and Explore Chess Games
chess2plyrs Chess Game Creation and Tools
chessboard Create Network Connections Based on Chess Moves
chest Change-in-Estimate Approach to Assess
Confounding Effects
chevron Standard TLGs for Clinical Trials Reporting
chi The Chi Distribution
chiOpenData Convenient Access to Chicago Open Data API
Endpoints
chicane Capture Hi-C Analysis Engine
childdevdata Child Development Data
childesr Accessing the 'CHILDES' Database
childeswordfreq Word and Phrase Frequency Tools for CHILDES
childfree Access and Harmonize Childfree Demographic Data
childpen Identification and Estimation of Child
Penalties
childsds Data and Methods Around Reference Values in
Pediatrics
chillR Statistical Methods for Phenology Analysis in
Temperate Fruit Trees
chipPCR Toolkit of Helper Functions to Pre-Process
Amplification Data
chirps API Client for CHIRPS and CHIRTS
chisquare Chi-Square and G-Square Test of Independence,
Power and Residual Analysis, Measures of
Categorical Association
chk Check User-Supplied Function Arguments
chlorpromazineR Convert Antipsychotic Doses to Chlorpromazine
Equivalents
chmsflow Transforming and Harmonizing CHMS Variables
chngpt Estimation and Hypothesis Testing for Threshold
Regression
choiceDes Design Functions for Choice Studies
choicedata Working with Choice Data
choicer Discrete Choice Models for Economic
Applications
cholera Amend, Augment and Aid Analysis of John Snow's
Cholera Map
chomper A Comprehensive Hit or Miss Probabilistic
Entity Resolution Model
chooseGCM Selecting General Circulation Models for
Species Distribution Modeling
choosepc Choose the Number of Principal Components via
Recistruction Error
chopin Spatial Parallel Computing by Hierarchical Data
Partitioning
choplump Permutation Test for Some Positive and Many
Zero Responses
chopper Changepoint-Aware Ensemble for Probabilistic
Modeling
chopthin The Chopthin Resampler
chords Estimation in Respondent Driven Samples
chores A Collection of Large Language Model Assistants
choroplethrAdmin1 Contains an Administrative-Level-1 Map of the
World
choroplethrMaps Contains Maps Used by the 'choroplethr' Package
chouca A Stochastic Cellular Automaton Engine
christmas Generation of Different Animated Christmas
Cards
chromConverter Chromatographic File Converter
chromer Interface to Chromosome Counts Database API
chromoMap Interactive Genomic Visualization of Biological
Data
chromote Headless Chrome Web Browser Interface
chromseq Split Chromosome 'Fasta' File
chron Chronological Objects which Can Handle Dates
and Times
chronicle Grammar for Creating R Markdown Reports
chronicler Add Logging to Functions
chronochrt Creating Chronological Charts
chronometre A 'chronomètre' is a 'stopwatch'
chronosphere Evolving Earth System Variables
chunked Chunkwise Text-File Processing for 'dplyr'
chunkhooks Chunk Hooks for 'R Markdown'
chyper Functions for Conditional Hypergeometric
Distributions
ci Confidence Intervals for Education
ciCalibrate Calibration of Confidence Intervals to Support
Intervals
ciTools Confidence or Prediction Intervals, Quantiles,
and Probabilities for Statistical Models
cia Learn and Apply Directed Acyclic Graphs for
Causal Inference
cicalc Calculate Confidence Intervals
cicero Predict cis-co-accessibility from single-cell
chromatin accessibility data
cicerone Provide Tours of 'Shiny' Applications
ciecl International Classification of Diseases
'ICD-10'/'ICD-11' for Chile
cif Cointegrated ICU Forecasting
ciflyr Reachability-Based Primitives for Graphical
Causal Inference
cifmodeling Visualization and Polytomous Modeling of
Survival and Competing Risks
cifti Toolbox for Connectivity Informatics Technology
Initiative ('CIFTI') Files
ciftiTools Tools for Reading, Writing, Viewing and
Manipulating CIFTI Files
cigarillo Efficient manipulation of CIGAR strings
cimir Interface to the CIMIS Web API
cinaR A Computational Pipeline for Bulk 'ATAC-Seq'
Profiles
cinaRgenesets Ready-to-Use Curated Gene Sets for 'cinaR'
cinterpolate Interpolation From C
cipheR Encryption and Decryption with Text Ciphers
ciphertext Classical Cryptography Methods for Words and
Phrases
cir Centered Isotonic Regression and Dose-Response
Utilities
circacompare Analyses of Circadian Data
circhelp Circular Analyses Helper Functions
circle R Client Package for Circle CI
circles A Small Package for Drawing Various
Combinations of Circles
circlesplot Visualize Proportions with Circles in a Plot
circletyper Curve Text Elements in 'Shiny' Using
'CircleType.js'
circlize Circular Visualization
circlizePlus Using 'ggplot2' Feature to Write Readable R
Code for Circular Visualization
circlus Clustering and Simulation of Spherical Cauchy
and PKBD Models
circuitscaper 'Circuitscape' and 'Omniscape' Connectivity
Analysis via 'Julia'
circular Circular Statistics
circularEV Extreme Value Analysis for Circular Data
circularKDE Recent Methods for Kernel Density Estimation of
Circular Data
circumplex Analysis and Visualization of Circular Data
cirls Constrained Iteratively Reweighted Least
Squares
cisp A Correlation Indicator Based on Spatial
Patterns
cit Causal Inference Test
citation Software Citation Tools
citationchaser Perform Forward and Backwards Chasing in
Evidence Syntheses
citecorp Client for the Open Citations Corpus
citestR Conditional Independence of Missingness Test
cities Clinical Trials with Intercurrent Events
Simulator
cito Building and Training Neural Networks
citrus Customer Intelligence Tool for Rapid
Understandable Segmentation
citsr Controlled Interrupted Time Series Analysis and
Visualization
ciu Contextual Importance and Utility
ciuupi Confidence Intervals Utilizing Uncertain Prior
Information
ciuupi2 Kabaila and Giri (2009) Confidence Interval
civ Categorical Instrumental Variables
civic.icarm Interpretable Civic-Accountable and Responsible
Machine Learning
civis R Client for the 'Civis Platform API'
ciw Watch the CRAN Incoming Directories
cjar R Client for 'Customer Journey Analytics'
('CJA') API
cjbart Heterogeneous Effects Analysis of Conjoint
Experiments
cjoint AMCE Estimator for Conjoint Experiments
ckanr Client for the Comprehensive Knowledge Archive
Network ('CKAN') API
clValid Validation of Clustering Results
cladoRcpp C++ Implementations of Phylogenetic
Cladogenesis Calculations
clam Classical Age-Depth Modelling of Cores from
Deposits
clampSeg Idealisation of Patch Clamp Recordings
clap Detecting Class Overlapping Regions in
Multidimensional Data
clarabel Interior Point Conic Optimization Solver
clarifai Access to Clarifai API
clarify Simulation-Based Inference for Regression
Models
clarkeTest Distribution-Free Tests of Non-Nested Models
classGraph Construct Graphs of S4 Class Hierarchies
classInt Choose Univariate Class Intervals
classicaltest Classical Test Theory (CTT) Analysis
classifierplots Generates a Visualization of Classifier
Performance as a Grid of Diagnostic Plots
classifly Explore Classification Models in High
Dimensions
classmap Visualizing Classification Results
clayringsmiletus Clay Stacking Rings Found in Miletus (Data)
clc CORINE Land Cover Data and Styles
cld Create Compact Letter Display (CLD) for
Statistical Comparisons
cld2 Google's Compact Language Detector 2
cld3 Google's Compact Language Detector 3
clda Convolution-Based Linear Discriminant Analysis
cleaR Clean the R Console and Environment
clean Fast and Easy Data Cleaning
cleanNLP A Tidy Data Model for Natural Language
Processing
cleanTS Testbench for Univariate Time Series Cleaning
cleancall C Resource Cleanup via Exit Handlers
cleandata To Inspect and Manipulate Data; and to Keep
Track of This Process
cleanepi Clean and Standardize Epidemiological Data
cleaner Fast and Easy Data Cleaning
cleangeo Cleaning Geometries from Spatial Objects
cleanr Helps You to Code Cleaner
cleanrmd Clean Class-Less 'R Markdown' HTML Documents
clevr Clustering and Link Prediction Evaluation in R
clhs Conditioned Latin Hypercube Sampling
cli Helpers for Developing Command Line Interfaces
cliapp Create Rich Command Line Applications
clickR Semi-Automatic Preprocessing of Messy Data with
Change Tracking for Dataset Cleaning
clickableImageMap Implement 'tableGrob' Object as a Clickable
Image Map
clickb Web Data Analysis by Bayesian Mixture of Markov
Models
clickstream Analyzes Clickstreams Based on Markov Chains
clidamonger Monthly Climate Data for Germany, Usable for
Heating and Cooling Calculations
clidatajp Data from Japan Meteorological Agency
cliff Execute Command Line Programs Interactively
clifford Arbitrary Dimensional Clifford Algebras
climaemet Tools for AEMET Climate Data
climate Interface to Download Meteorological (and
Hydrological) Datasets
climateStability Estimating Climate Stability from Climate Model
Data
climatehealth Statistical Tools for Modelling Climate-Health
Impacts
climatekit Unified Climate Indices for Temperature,
Precipitation, and Drought
climatol Climate Tools (Series Homogenization and
Derived Products)
climatrends Climate Variability Indices for Ecological
Modelling
clime Constrained L1-Minimization for Inverse
(Covariance) Matrix Estimation
climenu Interactive Command-Line Menus
climetrics Climate Change Metrics
climextRemes Tools for Analyzing Climate Extremes
climniche Niche Climate Exposure
climodr Climate Modeling with Point Data from Climate
Stations
climwin Climate Window Analysis
clinCompare Dataset Comparison with 'CDISC' Validation for
Clinical Trial Data
clinDR Simulation and Analysis Tools for Clinical Dose
Response Modeling
clinDataReview Clinical Data Review Tool
clinPK Clinical Pharmacokinetics Toolkit
clinTrialData Clinical Trial Example Datasets
clinUtils General Utility Functions for Analysis of
Clinical Data
clinfun Clinical Trial Design and Data Analysis
Functions
clinical Analysis of Clinical Data
clinicalfair Algorithmic Fairness Assessment for Clinical
Prediction Models
clinicalomicsdbR Interface with the 'ClinicalOmicsDB' API,
Allowing for Easy Data Downloading and
Importing
clinicalsignificance A Toolbox for Clinical Significance Analyses in
Intervention Studies
clinify Clinical Table Styling Tools and Utilities
clinmon Hemodynamic Calculations from Clinical
Monitoring
clinpubr Clinical Publication
clinsig Clinical Significance Functions
clinspacy Clinical Natural Language Processing using
'spaCy', 'scispaCy', and 'medspaCy'
clintools Tools for Clinical Research
clintrialx Connect and Work with Clinical Trials Data
Sources
cliot Clinical Indices and Outcomes Tools
clipp Calculating Likelihoods by Pedigree Paring
clipr Read and Write from the System Clipboard
clisymbols Unicode Symbols at the R Prompt
clitable Render Tables in Text for the Terminal
clmplus Tool-Box of Chain Ladder Plus Models
clmstan Cumulative Link Models with 'CmdStanR'
clock Date-Time Types and Tools
clockify A Wrapper for the 'Clockify' API
clockplot Plot Event Times on a 24-Hour Clock
clogitL1 Fitting Exact Conditional Logistic Regression
with Lasso and Elastic Net Penalties
clogitboost Boosting Conditional Logit Model
cloneRate Estimate Growth Rates from Phylogenetic Trees
clootl Fetch and Explore the Cornell Lab of
Ornithology Open Tree of Life Avian Phylogeny
clordr Composite Likelihood Inference and Diagnostics
for Replicated Spatial Ordinal Data
closeloop Integrate Single-Arm Observational Data in
Network Meta Analysis
cloudUtil Cloud Utilization Plots
cloudfs Streamlined Interface to Interact with Cloud
Storage Platforms
cloudml Interface to the Google Cloud Machine Learning
Platform
cloudosR 'Lifebit' Platform 'API' Client
cloudstoR Simplifies Access to Cloudstor API
clptheory Compute Price of Production and Labor Values
clr Curve Linear Regression via Dimension Reduction
clttools Central Limit Theorem Experiments (Theoretical
and Simulation)
clubSandwich Cluster-Robust (Sandwich) Variance Estimators
with Small-Sample Corrections
clubpro Classification Using Binary Procrustes Rotation
clue Cluster Ensembles
clugenr Multidimensional Cluster Generation Using
Support Lines
clusEvol A Procedure for Cluster Evolution Analytics
clusTransition Monitor Changes in Cluster Solutions of Dynamic
Datasets
clusrank Wilcoxon Rank Tests for Clustered Data
clust.bin.pair Statistical Methods for Analyzing Clustered
Matched Pair Data
clustAnalytics Cluster Evaluation on Graphs
clustEff Clusters of Effects Curves in Quantile
Regression Models
clustMD Model Based Clustering for Mixed Data
clustMixType k-Prototypes Clustering for Mixed Variable-Type
Data
clustNet Network-Based Clustering
clustTMB Spatio-Temporal Finite Mixture Model using
'TMB'
clustcurv Determining Groups in Multiples Curves
cluster.datasets Cluster Analysis Data Sets
clusterCrit Clustering Indices
clusterGGM Sparse Gaussian Graphical Modeling with
Variable Clustering
clusterGeneration Random Cluster Generation (with Specified
Degree of Separation)
clusterMI Cluster Analysis with Missing Values by
Multiple Imputation
clusterProfiler A Universal Enrichment Tool for Interpreting
Omics Data
clusterRepro Reproducibility of Gene Expression Clusters
clusterSEs Calculate Cluster-Robust p-Values and
Confidence Intervals
clusterSim Searching for Optimal Clustering Procedure for
a Data Set
clusterWebApp Universal Clustering Analysis Platform
clusterability Performs Tests for Cluster Tendency of a Data
Set
clusteredMSM Nonparametric Analysis of Clustered Multistate
Processes
clusterindices Cluster Validity Indices
clustering.sc.dp Optimal Distance-Based Clustering for
Multidimensional Data with Sequential
Constraint
clustermole Unbiased Single-Cell Transcriptomic Data Cell
Type Identification
clustermq Evaluate Function Calls on HPC Schedulers
(SLURM, LSF, SGE, GCS, OCS, PBS, Torque)
clusternomics Integrative Clustering for Heterogeneous
Biomedical Datasets
clustertend Check the Clustering Tendency
clusterv Assessment of Cluster Stability by Randomized
Maps
clustlearn Learn Clustering Techniques Through Examples
and Code
clustord Cluster Ordinal Data via Proportional Odds or
Ordered Stereotype
clustra Clustering Longitudinal Trajectories
clustrd Methods for Joint Dimension Reduction and
Clustering
clustree Visualise Clusterings at Different Resolutions
clustringr Cluster Strings by Edit-Distance
clustur Clustering
clustvarsel Variable Selection for Gaussian Model-Based
Clustering
cmAnalysis Process and Visualise Concept Mapping Data
cmR Analysis of Cardiac Magnetic Resonance Images
cmaRs Implementation of the Conic Multivariate
Adaptive Regression Splines in R
cmaes Covariance Matrix Adapting Evolutionary
Strategy
cmaesr Covariance Matrix Adaptation Evolution Strategy
cmahalanobis Calculate Distance Measures for DataFrames
cmbClust Conditional Mixture Modeling and Model-Based
Clustering
cmdfun Framework for Building Interfaces to Shell
Commands
cmfrec Collective Matrix Factorization for Recommender
Systems
cmgnd Constrained Mixture of Generalized Normal
Distributions
cmhc Access, Retrieve, and Work with CMHC Data
cml Conditional Manifold Learning
cmm Categorical Marginal Models
cmmr CEU Mass Mediator RESTful API
cmna Computational Methods for Numerical Analysis
cmocean Beautiful Colour Maps for Oceanography
cmpp Direct Parametric Inference for the Cumulative
Incidence Function in Competing Risks
cmprsk Subdistribution Analysis of Competing Risks
cmprskQR Analysis of Competing Risks Using Quantile
Regressions
cmprskcoxmsm Use IPW to Estimate Treatment Effect under
Competing Risks
cmpsR R Implementation of Congruent Matching Profile
Segments Method
cms Calculate Medicare Reimbursement
cmsaf A Toolbox for CM SAF NetCDF Data
cmsafops Tools for CM SAF NetCDF Data
cmsafvis Tools to Visualize CM SAF NetCDF Data
cmstatr Statistical Methods for Composite Material Data
cmstatrExt More Statistical Methods for Composite Material
Data
cmtest Conditional Moments Test
cmtkr Wrapper for the Computational Morphometry
Toolkit ('CMTK') Library
cmvnorm The Complex Multivariate Gaussian Distribution
cna Causal Modeling with Coincidence Analysis
cnaOpt Optimizing Consistency and Coverage in
Configurational Causal Modeling
cnbdistr Conditional Negative Binomial Distribution
cncaGUI Canonical Non-Symmetrical Correspondence
Analysis in R
cnd Create and Register Conditions
cnefetools Access and Analysis of Brazilian CNEFE Address
Data
cnmap China Map Data from AutoNavi Map
cnum Chinese Numerals Processing
coFAST Spatially-Aware Cell Clustering Algorithm with
Cluster Significant Assessment
coRanking Co-Ranking Matrix
coRdon Codon Usage Analysis and Prediction of Gene
Expressivity
coala A Framework for Coalescent Simulation
coalescentMCMC MCMC Algorithms for the Coalescent
coalitions Bayesian "Now-Cast" Estimation of Event
Probabilities in Multi-Party Democracies
coarseDataTools Analysis of Coarsely Observed Data
coat Conditional Method Agreement Trees (COAT)
cobalt Covariate Balance Tables and Plots
cobenrich Using Multiple Continuous Biomarkers for
Patient Enrichment in Two-Stage Clinical
Designs
cobiclust Biclustering via Latent Block Model Adapted to
Overdispersed Count Data
cobin Cobin and Micobin Regression Models for
Continuous Proportional Data
cobs Constrained B-Splines (Sparse Matrix Based)
cocktailApp 'shiny' App to Discover Cocktails
coconots Convolution-Closed Models for Count Time Series
cocons Covariate-Based Covariance Functions for
Nonstationary Spatial Modeling
cocoon Extract, Format, and Print Statistical Output
cocor Comparing Correlations
cocorresp Co-Correspondence Analysis Methods
cocosoR CoCoSo - Combined Compromise Solution Method
for MCDA
cocotest Dependence Condition Test Using Ranked
Correlation Coefficients
cocron Statistical Comparisons of Two or more Alpha
Coefficients
coda Output Analysis and Diagnostics for MCMC
coda.base A Basic Set of Functions for Compositional Data
Analysis
coda.pack Meta-Package for Compositional Data Analysis
coda.plot Plots for Compositional Data
coda4microbiome Compositional Data Analysis for Microbiome
Studies
codacore Learning Sparse Log-Ratios for Compositional
Data
codalm Transformation-Free Linear Regression for
Compositional Outcomes and Predictors
codaredistlm Compositional Data Linear Models with
Composition Redistribution
codeCollection Collection of Codes with Labels
codebook Automatic Codebooks from Metadata Encoded in
Dataset Attributes
codebookr Create Codebooks from Data Frames
codebreaker Retro Logic Game
codecountR Counting Codes in a Text and Preparing Data for
Analysis
codelist Working with Code Lists
codemeta A Smaller 'codemetar' Package
codemetar Generate 'CodeMeta' Metadata for R Packages
codename Generation of Code Names for Organizations,
People, Projects, and Whatever Else
codep Multiscale Codependence Analysis
coder Deterministic Categorization of Items Based on
External Code Data
codestral Chat and FIM with 'Codestral'
codewhere Find the Location of an R Package's Code
codexcopd The CODEX (Comorbidity, Obstruction, Dyspnea,
and Previous Severe Exacerbations) Index: Short
and Medium-Term Prognosis in Patients
Hospitalized for Chronic Obstructive Pulmonary
Disease (COPD) Exacerbations
codez Seq2Seq Encoder-Decoder Model for Time-Feature
Analysis Based on Tensorflow
codified Produce Standard/Formalized Demographics Tables
codingMatrices Alternative Factor Coding Matrices for Linear
Model Formulae
codyn Community Dynamics Metrics
codyna Complex Dynamic Systems
coefa Meta Analysis of Factor Analysis Based on
CO-Occurrence Matrices
coefficientalpha Robust Coefficient Alpha and Omega with Missing
and Non-Normal Data
coefplot Plots Coefficients from Fitted Models
coenocliner Coenocline Simulation
coenoflex Gradient-Based Coenospace Vegetation Simulator
cofad Contrast Analyses for Factorial Designs
coffee Chronological Ordering for Fossils and
Environmental Events
cofid Copepod Fish Interaction Database
coga Convolution of Gamma Distributions
cogirt Cognitive Testing Using Item Response Theory
coglasso Collaborative Graphical Lasso - Multi-Omics
Network Reconstruction
coglyphr Compute Glyph Centers of Gravity from Image
Data
cogmapr Cognitive Mapping Tools Based on Coding of
Textual Sources
cognitoR Authentication for 'Shiny' Apps with 'Amazon
Cognito'
cograph Analysis and Visualization of Complex Networks
cohetsurr Assessing Complex Heterogeneity in Surrogacy
cohortBuilder Data Source Agnostic Filtering Tools
cohorts Cohort Analysis Made Easy
cohorttools Cohort Data Analyses
coin Conditional Inference Procedures in a
Permutation Test Framework
coinmarketcapr Get 'Cryptocurrencies' Market Cap Prices from
Coin Market Cap
cointReg Parameter Estimation and Inference in a
Cointegrating Regression
cointests Comprehensive Cointegration Tests with Fourier
and Panel Methods
cointmonitoR Consistent Monitoring of Stationarity and
Cointegrating Relationships
cointsmall Cointegration Tests with Structural Breaks in
Small Samples
col2hex2col Convert Between Color Names and Hex Codes
cold Count Longitudinal Data
coldrift Lightweight Column Drift Detection for Tabular
Data
collapse Advanced and Fast Data Transformation
collapsibleTree Interactive Collapsible Tree Diagrams using
'D3.js'
collateral Quickly Evaluate Captured Side Effects
collatz Functions Related to the Collatz/Syracuse/3n+1
Problem
collections High Performance Container Data Types
collegeScorecard US College Scorecard Data
collett Datasets from "Modelling Survival Data in
Medical Research" by Collett
colleyRstats Functions to Streamline Statistical Analysis
and Reporting
collidr Check for Namespace Collisions Across Packages
and Functions on CRAN
collin Visualization the Effects of Collinearity in
Distributed Lag Models and Other Linear Models
collinear Automated Multicollinearity Management
collpcm Collapsed Latent Position Cluster Model for
Social Networks
coloc Colocalisation Tests of Two Genetic Traits
colocPropTest Proportional Testing for Colocalisation
Analysis
colocalization Normalized Spatial Intensity Correlation
colocalized Clusters of Colocalized Sequences
colocboost Multi-Context Colocalization Analysis for QTL
and GWAS Studies
colorBlindness Safe Color Set for Color Blindness
colorDF Colorful Data Frames in R Terminal
colorRamp2 Generate Color Mapping Functions
colorRamps Builds Color Tables
colorSpec Color Calculations with Emphasis on Spectral
Data
colorblindcheck Check Color Palettes for Problems with Color
Vision Deficiency
colordistance Distance Metrics for Image Color Similarity
colorednoise Simulate Temporally Autocorrelated Populations
colorfast Fast Conversion of R Colors to Color Component
Values and Native Packed Integer Format
colorfindr Extract Colors from Windows BMP, JPEG, PNG,
TIFF, and SVG Format Images
colorhcplot Colorful Hierarchical Clustering Dendrograms
colorify Intuitive Color and Palette Generation and
Modification
colorist Coloring Wildlife Distributions in Space-Time
colorize Render Text in Color for Markdown/Quarto
Documents
colorizer Colorize Old Images Using the 'DeOldify' Image
Colorization API
colormap Color Palettes using Colormaps Node Module
colorplane Basic S4 Classes and Methods for Mapping
Between Numeric Values and Colors
colorr Color Palettes for EPL, MLB, NBA, NHL, and NFL
Teams
colorrepel Repel Visually Similar Colors for Colorblind
Users in Various Plots
colors3d Generate 2D and 3D Color Palettes
colorsGen Generation of Random Colors
colorscience Color Science Methods and Data
colorspace A Toolbox for Manipulating and Assessing Colors
and Palettes
colouR Create Colour Palettes from Images
colourlovers R Client for the COLOURlovers API
colourpicker A Colour Picker Tool for Shiny and for
Selecting Colours in Plots
colourspace Convert from One Colour Space to Another, Print
a Ready-to-Paste Modern 'CSS' Syntax
colourvalues Assigns Colours to Values
colourvision Colour Vision Models
cols Constrained Ordinary Least Squares
cols4all Colors for all
colt Command-Line Color Themes
comFuncs Commonly Used Functions for R Shiny
Applications
comat Creates Co-Occurrence Matrices of Spatial Data
comato Analysis of Concept Maps and Concept Landscapes
combat.enigma Fit and Apply ComBat, LMM, or Prescaling
Harmonization for ENIGMA and Other Multisite
MRI Data
combcoint A Joint Test-Statistic for the Null of
Non-Cointegration
combinat combinatorics utilities
combinatorics Introduction to Some Combinatorial Relations
combinedevents Calculate Scores and Marks for Track and Field
Combined Events
combiroc Selection and Ranking of Omics Biomarkers
Combinations Made Easy
combiter Combinatorics Iterators
combss Continuous Optimisation Towards Best Subset
Selection
comclim Community Climate Statistics
cometr 'Comet' API for R
comets Covariance Measure Tests for Conditional
Independence
comexr Client for the Brazilian Foreign Trade
Statistics API ('ComexStat')
comf Models and Equations for Human Comfort Research
commafree Call Functions Without Commas Between Arguments
command Process Command Line Arguments
commecometrics Ecometric Models of Trait–Environment
Relationships at the Community Level
common Solutions for Common Problems in Base R
commonmark High Performance CommonMark and Github Markdown
Rendering in R
commonsMath JAR Files of the Apache Commons Mathematics
Library
comorbidPGS Assessing Predisposition Between Phenotypes
using Polygenic Scores
comorbidity Computing Comorbidity Scores
comorosmaps Comoro Islands Maps
compIndexBuilder Composite Index Builder & Analytics 'shiny' App
comparator Comparison Functions for Clustering and Record
Linkage
compare Comparing Objects for Differences
compareC Compare Two Correlated C Indices with
Right-Censored Survival Outcome
compareCstat Compare C-Statistics (Concordance) Between
Survival Models
compareDF Do a Git Style Diff of the Rows Between Two
Dataframes with Similar Structure
compareGroups Descriptive Analysis by Groups
compareMCMCs Compare MCMC Efficiency from 'nimble' and/or
Other MCMC Engines
comparison Multivariate Likelihood Ratio Calculation and
Evaluation
compas Conformational Manipulations of Protein Atomic
Structures
compdb Generate Compilation Database for Use with
'Clang' Tools
comperank Ranking Methods for Competition Results
comperes Manage Competition Results
competitiontoolbox A Graphical User Interface for Antitrust and
Trade Practitioners
comphy Functions Used in the Book "Computational
Physics with R"
compindPCA Computation of Relative Weights of Variables
and Composite Index Values Based on PCA
compindexR Calculates Composite Index
completejourney Retail Shopping Data
complex Time Series Analysis and Forecasting Using
Complex Variables
complexNet Complex Network Generation
complexity Calculate the Proportion of Permutations in
Line with an Informative Hypothesis
complexlm Linear Fitting for Complex Valued Data
complmrob Robust Linear Regression with Compositional
Data as Covariates
compositeReliabilityInNestedDesigns
Optimizing the Composite Reliability in
Multivariate Nested Designs
compositional.mle Compositional Maximum Likelihood Estimation
compositions Compositional Data Analysis
compound.Cox Univariate Feature Selection and Compound
Covariate for Predicting Survival, Including
Copula-Based Analyses for Dependent Censoring
comprehenr List Comprehensions
compute.es Compute Effect Sizes
comsimitv Flexible Framework for Simulating Community
Assembly
comstab Partitioning the Drivers of Stability of
Ecological Communities
comtrade Access and Analyse UN Comtrade International
Trade Data
comtradr Interface with the United Nations Comtrade API
con2aqi Calculate the AQI from Pollutant Concentration
con2lki Calculate the Dutch Air Quality Index (LKI)
conMItion Conditional Mutual Information Estimation for
Multi-Omics Data
conText 'a la Carte' on Text (ConText) Embedding
Regression
conTree Contrast Trees and Boosting
concatipede Easy Concatenation of Fasta Sequences
concaveman A Very Fast 2D Concave Hull Algorithm
concorR CONCOR and Supplemental Functions
concordance Product Concordance
concstats Market Structure, Concentration and Inequality
Measures
cond Approximate Conditional Inference for Logistic
and Loglinear Models
condGEE Parameter Estimation in Conditional GEE for
Recurrent Event Gap Times
condMVNorm Conditional Multivariate Normal Distribution
condSURV Estimation of the Conditional Survival Function
for Ordered Multivariate Failure Time Data
condTruncMVN Conditional Truncated Multivariate Normal
Distribution
condathis Run Any CLI Tool on a 'Conda' Environment
condensr Academic Group Website Generator
condformat Conditional Formatting in Data Frames
condir Computation of P Values and Bayes Factors for
Conditioning Data
conditionalProbNspades
Conditional Probabilities of Distributions
Across Hearts Hands
conditionz Control How Many Times Conditions are Thrown
condor Interact with 'Condor' from R via SSH
condorOptions Trading Condor Options Strategies
conductor Create Tours in 'Shiny' Apps Using
'Shepherd.js'
condvis Conditional Visualization for Statistical
Models
condvis2 Interactive Conditional Visualization for
Supervised and Unsupervised Models in Shiny
coneproj Primal or Dual Cone Projections with Routines
for Constrained Regression
conf Visualization and Analysis of Statistical
Measures of Confidence
conf.design Construction of factorial designs
confMeta Confidence Curves and P-Value Functions for
Meta-Analysis
confcons Confidence and Consistency of Predictive
Distribution Models
confidence Confidence Estimation of Environmental State
Classifications
confidenceCurves Frequentist Confidence Analysis for Clinical
Trials
config Manage Environment Specific Configuration
Values
configr An Implementation of Parsing and Writing
Configuration File (JSON/INI/YAML/TOML)
configulaR Manage Application Settings via '.env' or
'.ini' Files
configural Multivariate Profile Analysis
confintROB Confidence Intervals for Robust and Classical
Linear Mixed Model Estimators
confinterpret Descriptive Interpretations of Confidence
Intervals
confintr Confidence Intervals
conflicted An Alternative Conflict Resolution Strategy
conforest Conformal Random Forests for Response Surface
Emulation
conformalForecast Conformal Prediction Methods for
Multistep-Ahead Time Series Forecasting
conformalInference.fd Tools for Conformal Inference for Regression in
Multivariate Functional Setting
conformalInference.multi
Conformal Inference Tools for Regression with
Multivariate Response
conformalbayes Jackknife(+) Predictive Intervals for Bayesian
Models
conformalpvalue Computes Conformal p-Values
confoundvis Visualization Tools for Sensitivity Analysis of
Unmeasured Confounding
confreq Configural Frequencies Analysis Using
Log-Linear Modeling
congress Access the Congress.gov API
conicfit Algorithms for Fitting Circles, Ellipses and
Conics Based on the Work by Prof. Nikolai
Chernov
conjoint An Implementation of Conjoint Analysis Method
conjurer A Parametric Method for Generating Synthetic
Data
conleyreg Estimations using Conley Standard Errors
conmet Construct Measurement Evaluation Tool
connectapi Utilities for Interacting with the 'Posit
Connect' Server API
connectcreds Manage 'OAuth' Credentials from 'Posit Connect'
connected Visualize and Improve Connectedness of Factors
in Tables
connections Integrates with the 'RStudio' Connections Pane
and 'pins'
connectoModa Download Data from Moda
connector Streamlining Data Access in Clinical Research
connector.databricks Expand 'connector' Package for 'Databricks'
Tables and Volumes
connector.sharepoint 'Microsoft SharePoint' Interface for the
'connector' Package
connectwidgets Organize and Curate Your Content Within 'Posit
Connect'
conos Clustering on Network of Samples
conover.test Conover-Iman Test of Multiple Comparisons Using
Rank Sums
conquer Convolution-Type Smoothed Quantile Regression
conquestr An R Package to Extend 'ACER ConQuest'
conrad Client for the Microsoft's 'Cognitive Services
Text to Speech REST' API
conserveR Identifying Conservation Prioritization Methods
Based on Data Availability
consibiocloudclient A Client for the 'Consibio Cloud' API
consolechoice An Easy and Quick Way to Loop a Character
Vector as a Menu in the Console
consolidatePacks Eliminate '@import' by Incorporating
Dependencies Directly into the Package
consort Create Consort Diagram
consortr Interactive Consort Flow Diagrams
consrq Constrained Quantile Regression
constants Reference on Constants, Units and Uncertainty
constellation Identify Event Sequences Using Time Series
Joins
constrainedKriging Constrained, Covariance-Matching Constrained
and Universal Point or Block Kriging
constructive Display Idiomatic Code to Construct Most R
Objects
contFracR Continued Fraction Generators and Evaluators
contTimeCausal Continuous Time Causal Models
contactdata Social Contact Matrices for 177 Countries
contactsurveys Download Contact Surveys for Use in Infectious
Disease Modelling
contagionchannels Two-Stage Detection and Attribution of
Cross-Border Financial Contagion Channels
container Extending Base 'R' Lists
containr Containerize Your 'R' Project
contdid Difference-in-Differences with a Continuous
Treatment
contentValidity Content Validity Indices for Instrument
Development
contentanalysis Scientific Content and Citation Analysis from
PDF Documents
contentid An Interface for Content-Based Identifiers
contextFind Find Code Snippets with Context and Click to
Navigate Directly to Results
contfrac Continued Fractions
contingency Discrete Multivariate Probability Distributions
contingencytables Statistical Analysis of Contingency Tables
contoso Dataset of the 'Contoso' Company
contourPlot Plots x,y,z Co-Ordinates in a Contour Map
contourforest Contour-Enhanced Forest Plots for Meta-Analysis
contrast A Collection of Contrast Methods
contrastable Consistent Contrast Coding for Factors
contribution A Tiny Contribution Table Generator Based on
'ggplot2'
control A Control Systems Toolbox
controlTest Quantile Comparison for Two-Sample
Right-Censored Survival Data
controlfunctionIV Control Function Methods with Possibly Invalid
Instrumental Variables
contsurvplot Visualize the Effect of a Continuous Variable
on a Time-to-Event Outcome
convdistr Convolute Probabilistic Distributions
convergEU Monitoring Convergence of EU Countries
convergenceDFM Convergence and Dynamic Factor Models
conversim Conversation Similarity Analysis
convertBCD Convert Decimal to Binary-Coded Decimal (BCD)
Form and Vice Versa
convertbonds Use the Given Parameters to Calculate the
European Option Value
convertid Convert Gene IDs Between Each Other and Fetch
Annotations from Biomart
convertr Convert Between Units
convevol Analysis of Convergent Evolution
convey Income Concentration Analysis with Complex
Survey Samples
convoSPAT Convolution-Based Nonstationary Spatial
Modeling
cooccure Co-Occurrence Network Construction and
Manipulation
cookie HTTP Cookies Parser Middleware
cookiecutter Generate Project Files from a Template
cookiemonster Your Friendly Solution to Managing Browser
Cookies
cookies Use Browser Cookies with 'shiny'
cooltools Practical Tools for Scientific Computations and
Visualizations
coop Co-Operation: Fast Covariance, Correlation, and
Cosine Similarity Operations
copBasic General Bivariate Copula Theory and Many
Utility Functions
copCAR Fitting the copCAR Regression Model for
Discrete Areal Data
copcor Correlates of Protection and Correlates of Risk
Functions
cope Coverage Probability Excursion (CoPE) Sets
copent Estimating Copula Entropy and Transfer Entropy
copernicusR R Interface to Copernicus Marine Service
cophescan Adaptation of the Coloc Method for PheWAS
copre Tools for Nonparametric Martingale Posterior
Sampling
cops Cluster Optimized Proximity Scaling
copula Multivariate Dependence with Copulas
copulaData Data Sets for Copula Modeling
copulaSFM Copula-Based Stochastic Frontier Models
copulaSQM Copula Based Stochastic Frontier Quantile Model
copulaSim Virtual Patient Simulation by Copula Invariance
Property
copulaboost Fitting Additive Copula Regression Models for
Binary Outcome Regression
copulareg Copula Regression
copyseparator Assembling Long Gene Copies from Short Read
Data
corHMM Hidden Markov Models of Character Evolution
corMLPE Correlation Structures for Symmetric Relational
Data
corTESTsrd Significance Testing of Rank Cross-Correlations
under SRD
corTest Robust Tests for Equal Correlation
cora Cora Data for Entity Resolution
corazon Apply 'colorffy' Color Gradients Within 'shiny'
Elements
corbouli Corbae-Ouliaris Frequency Domain Filtering
corclass Correlational Class Analysis
cord Community Estimation in G-Models via CORD
cordillera Calculation of the OPTICS Cordillera
coreCT Programmatic Analysis of Sediment Cores Using
Computed Tomography Imaging
coreNLP Wrappers Around Stanford CoreNLP Tools
coreSim Core Functionality for Simulating Quantities of
Interest from Generalised Linear Models
coreheat Correlation Heatmaps
corehunter Multi-Purpose Core Subset Selection
corella Prepare, Manipulate and Check Data to Comply
with Darwin Core Standard
corels R Binding for the 'Certifiably Optimal RulE
ListS (Corels)' Learner
coresynth Fast and Unified Synthetic Control Methods
corkscrew Preprocessor for Data Modeling
corlink Record Linkage, Incorporating Imputation for
Missing Agreement Patterns, and Modeling
Correlation Patterns Between Fields
corncob Count Regression for Correlated Observations
with the Beta-Binomial
cornet Penalised Regression for Dichotomised Outcomes
coro 'Coroutines' for R
coroICA Confounding Robust Independent Component
Analysis for Noisy and Grouped Data
corona Coronavirus ('Rona') Data Exploration
coronavirus The 2019 Novel Coronavirus COVID-19 (2019-nCoV)
Dataset
corpcor Efficient Estimation of Covariance and
(Partial) Correlation
corpmetrics Tools for Valuation, Financial Metrics and
Modeling in Corporate Finance
corpora Statistics and Data Sets for Corpus Frequency
Data
corporaexplorer A 'Shiny' App for Exploration of Text
Collections
corpustools Managing, Querying and Analyzing Tokenized Text
corr2D Implementation of 2D Correlation Analysis in R
corrDNA Finding Associations in Position-Wise Aligned
DNA Sequence Dataset
corrMCT Correlated Weighted Hochberg
corrRF Clustered Random Forests for Optimal Prediction
and Inference of Clustered Data
corrViz Visualise Correlations
correctR Corrected Test Statistics for Comparing Machine
Learning Models on Correlated Samples
correctedAUC Correcting AUC for Measurement Error
correctref Correct and Standardize References for
Scientific Manuscripts
correlatio Visualize Details Behind Pearson's Correlation
Coefficient
correlation Methods for Correlation Analysis
correlationfunnel Speed Up Exploratory Data Analysis (EDA) with
the Correlation Funnel
correlationr Conduct Robust Correlations on Non-Normal Data
correlbinom Correlated Binomial Probabilities
correspondenceTables Creating Correspondence Tables Between Two
Statistical Classifications
corrfuns Correlation Coefficient Related Functions
corrgram Plot a Correlogram
corrmeta Correlated Meta-Analysis
corrplot Visualization of a Correlation Matrix
corrr Correlations in R
corrselect Correlation-Based and Model-Based Predictor
Pruning
corrsieve Software for Summarising and Evaluating
STRUCTURE Output
corrtable Creates and Saves Out a Correlation Table with
Significance Levels Indicated
corset Arbitrary Bounding of Series and Time Series
Objects
corteza AI Agent Runtime
corto Inference of Gene Regulatory Networks
corx Create and Format Correlation Matrices
cosCorr Cosine-Correlation Coefficient for Vector
Variables
cosa Bound Constrained Optimal Sample Size
Allocation
cosimmr Fast Fitting of Stable Isotope Mixing Models
with Covariates
cosinor Tools for Estimating and Predicting the Cosinor
Model
cosinor2 Extended Tools for Cosinor Analysis of Rhythms
cosmic Conditional Ordinal Stereotype Model for
Incident-Level Comparison
cosmicsig Mutational Signatures from COSMIC (Catalogue of
Somatic Mutations in Cancer)
cosmoFns Cosmological Distances, Times, Luminosities,
Etc
cosso Fit Regularized Nonparametric Regression Models
Using COSSO Penalty
cossonet Sparse Nonparametric Regression for
High-Dimensional Data
costat Time Series Costationarity Determination
costsensitive Cost-Sensitive Multi-Class Classification
cotram Count Transformation Models
cotrend Consistent Co-Trending Rank Selection
countDM Estimation of Count Data Models
countHMM Penalized Estimation of Flexible Hidden Markov
Models for Time Series of Counts
countSTAR Flexible Modeling of Count Data
countcolors Locates and Counts Pixels Within Color Range(s)
in Images
countdata The Beta-Binomial Test for Count Data
countdown A Countdown Timer for HTML Presentations,
Documents, and Web Apps
counterfactuals Counterfactual Explanations
countfitteR Comprehensive Automatized Evaluation of
Distribution Models for Count Data
countgmifs Discrete Response Regression for
High-Dimensional Data
countland Analysis of Biological Count Data, Especially
from Single-Cell RNA-Seq
countmaskr Small Cell Masking Tool for One- & Two-Way
Tabular Reports
countprop Calculate Model-Based Metrics of
Proportionality on Count-Based Compositional
Data
countries Deal with Country Data in an Easy Way
countrycode Convert Country Names and Country Codes
countsplit Splitting a Count Matrix into Independent Folds
countts Thomson Sampling for Zero-Inflated Count
Outcomes
countyhealthR Programmatic Access to County Health Rankings &
Roadmaps Data
coupling Analysis of Coupling Coordination Degree
couplr Optimal Pairing and Matching via Linear
Assignment
courieR Migrate Installed R Packages Between R Versions
covBM Brownian Motion Processes for 'nlme'-Models
covKCD Covariance Estimation for Matrix Data with the
Kronecker-Core Decomposition
covRobust Robust Covariance Estimation via Nearest
Neighbor Cleaning
covadap Implement Covariate-Adaptive Randomization
covafillr Local Polynomial Regression of State Dependent
Covariates in State-Space Models
covalchemy Constructing Joint Distributions with Control
Over Statistical Properties
covatest Tests on Properties of Space-Time Covariance
Functions
coveR2 Process Digital Cover Photography Images of
Tree Crowns
coveffectsplot Produce Forest Plots to Visualize Covariate
Effects
covequal Test for Equality of Covariance Matrices
covercorr Coverage Correlation Coefficient and Testing
for Independence
covfefe Political Linguistics Toolkit - Gaffes,
Phonetics, and Text Transformation
covglasso Sparse Covariance Matrix Estimation
covid19.analytics Load and Analyze Live Data from the COVID-19
Pandemic
covid19br Brazilian COVID-19 Pandemic Data
covid19dbcand Selected 'Drugbank' Drugs for COVID-19
Treatment Related Data in R Format
covid19france Cases of COVID-19 in France
covid19india Pulling Clean Data from Covid19india.org
covid19italy The 2019 Novel Coronavirus COVID-19 (2019-nCoV)
Italy Dataset
covid19sf The Covid19 San Francisco Dataset
covid19srilanka The 2019 Novel Coronavirus COVID-19 (2019-nCoV)
Data in Sri Lanka
covid19tunisia Cases of COVID-19 in Tunisia
covid19us Cases of COVID-19 in the United States
covidcast Client for Delphi's 'COVIDcast Epidata' API
covidnor Public COVID-19 Data for Norway
covidprobability Estimate the Unit-Wide Probability of COVID-19
covidsymptom COVID Symptom Study Sweden Open Dataset
covr Test Coverage for Packages
covsim VITA, IG and PLSIM Simulation for Given
Covariance and Marginals
covtracer Contextualizing Tests
cowbell Performs Segmented Linear Regression on Two
Independent Variables
cowfootR Dairy Farm Carbon Footprint Assessment
cowplot Streamlined Plot Theme and Plot Annotations for
'ggplot2'
cowsay Messages, Warnings, Strings with Ascii Animals
cox.rvph Remedy the Violation of the Proportional
Hazards Assumption of Cox Regression
coxerr Cox Regression with Dependent Error in
Covariates
coxme Mixed Effects Cox Models
coxphSGD Stochastic Gradient Descent log-Likelihood
Estimation in Cox Proportional Hazards Model
coxphf Cox Regression with Firth's Penalized
Likelihood
coxphm Time-to-Event Data Analysis with Missing
Survival Times
coxphw Weighted Estimation in Cox Regression
coxrobust Fit Robustly Proportional Hazards Regression
Model
coxsei Fitting a CoxSEI Model
cp4p Calibration Plot for Proteomics
cpa Confirmatory Path Analysis Through 'd-sep'
Tests
cpam Changepoint Additive Models for Time Series
Omics Data
cpd Complex Pearson Distributions
cpfa Classification with Parallel Factor Analysis
cpgfR Consolidates Information from the Federal
Government Payment Card
cpi Conditional Predictive Impact
cplm Compound Poisson Linear Models
cplots Plots for Circular Data
cpm Sequential and Batch Change Detection Using
Parametric and Nonparametric Methods
cpmBigData Fitting Semiparametric Cumulative Probability
Models for Big Data
cpmr Connectome Predictive Modelling in R
cpop Detection of Multiple Changes in Slope in
Univariate Time-Series
cpp11 A C++11 Interface for R's C Interface
cpp11armadillo An 'Armadillo' Interface
cpp11bigwig Read bigWig and bigBed Files
cpp11eigen An 'Eigen' Interface
cpp11qpdf Split, Combine and Compress PDF Files
cpp4r Header-Only 'C++' and 'R' Interface
cppRouting Algorithms for Routing and Solving the Traffic
Assignment Problem
cppSim Fast and Memory Efficient Spatial Interaction
Models
cppally A 'C++20' API for R
cppcheckR Check 'C' and 'C++' Files using 'Cppcheck'
cppcontainers 'C++' Standard Template Library Containers
cppdoubles Fast Relative Comparisons of Floating Point
Numbers in 'C++'
cpr Control Polygon Reduction
cprobit Conditional Probit Model for Analysing
Continuous Outcomes
cprr Functions for Working with Danish CPR Numbers
cpsR Load CPS Microdata into R Using the 'Census
Bureau Data' API
cpsurvsim Simulating Survival Data from Change-Point
Hazard Distributions
cpsvote A Toolbox for Using the CPS’s Voting and
Registration Supplement
cpt Classification Permutation Test
cptcity 'cpt-city' Colour Gradients
cqn Conditional quantile normalization
cqrReg Quantile, Composite Quantile Regression and
Regularized Versions
cquad Conditional Maximum Likelihood for Quadratic
Exponential Models for Binary Panel Data
cragg Tests for Weak Instruments in R
cramR Cram Method for Efficient Simultaneous Learning
and Evaluation
cramer Multivariate Nonparametric Cramer-Test for the
Two-Sample-Problem
crandep Network Analysis of Dependencies of CRAN
Packages
crane Supplements the 'gtsummary' Package for
Pharmaceutical Reporting
crank Completing Ranks
cranlike Tools for 'CRAN'-Like Repositories
cranlogs Download Logs from the 'RStudio' 'CRAN' Mirror
cranly Package Directives and Collaboration Networks
in CRAN
crassmat Conditional Random Sampling Sparse Matrices
crawl Fit Continuous-Time Correlated Random Walk
Models to Animal Movement Data
crayon Colored Terminal Output
crayons Color Palettes from Crayon Boxes
crc32c Cyclic Redundancy Check with CPU-Specific
Acceleration
crch Censored Regression with Conditional
Heteroscedasticity
crctStepdown Univariate Analysis of Cluster Trials with
Multiple Outcomes
cre.dcf Discounted Cash Flow Tools for Commercial Real
Estate
createLogicalPCM Create Logical Pairwise Comparison Matrix for
the Analytic Hierarchy Process
credentials Tools for Managing SSH and Git Credentials
creditr Credit Default Swaps
credsubs Credible Subsets
credule Credit Default Swap Functions
creepyalien Puzzle Game for the R Console
crew A Distributed Worker Launcher Framework
crew.aws.batch A Crew Launcher Plugin for AWS Batch
crew.cluster Crew Launcher Plugins for Traditional
High-Performance Computing Clusters
cricketdata International Cricket Data
cricketr Analyze Cricketers and Cricket Teams Based on
ESPN Cricinfo Statsguru
crimCV Group-Based Modelling of Longitudinal Data
crimedata Access Crime Data from the Open Crime Database
crimedatasets A Comprehensive Collection of Crime-Related
Datasets
crimeutils A Comprehensive Set of Functions to Clean,
Analyze, and Present Crime Data
crisp Fits a Model that Partitions the Covariate
Space into Blocks in a Data- Adaptive Way
crispRdesignR Guide Sequence Design for CRISPR/Cas9
criticality Modeling Fissile Material Operations in Nuclear
Facilities
criticalpath An Implementation of the Critical Path Method
critpath Setting the Critical Path in Project Management
crm12Comb Phase I/II CRM Based Drug Combination Design
crmPack Object-Oriented Implementation of Dose
Escalation Designs
crmReg Cellwise Robust M-Regression and SPADIMO
crmn CCMN and Other Normalization Methods for
Metabolomics Data
crochet Implementation Helper for '[' and '[<-' of
Custom Matrix-Like Types
cromwellDashboard A Dashboard to Visualize Scientific Workflows
in 'Cromwell'
cronR Schedule R Scripts and Processes with the
'cron' Job Scheduler
crone Structural Crystallography in 1d
cronologia Create an HTML Vertical Timeline from a Data
Frame in 'rmarkdown' and 'shiny'
crookR Synthetic Crook Deformations in Stem Point
Clouds
crop Graphics Cropping Tool
cropDemand Spatial Crop Water Demand for Brazil
cropZoning Climate Crop Zoning Based in Air Temperature
for Brazil
cropcircles Crops an Image to a Circle
cropdatape Open Data of Agricultural Production of Crops
of Peru
cropgrowdays Crop Growing Degree Days and Agrometeorological
Calculations
crops Changepoints for a Range of Penalties (CROPS)
crossdes Construction of Crossover Designs
crossfit A Graph-Based Cross-Fitting Engine in R
crosshap Local Haplotype Clustering and Visualization
crosslag Perform Linear or Nonlinear Cross Lag Analysis
crossmap Apply Functions to All Combinations of List
Elements
crossmatch The Cross-Match Test
crossnma Cross-Design & Cross-Format Network
Meta-Analysis and Regression
crossrun Joint Distribution of Number of Crossings and
Longest Run
crosstable Crosstables for Descriptive Analyses
crosstalk Inter-Widget Interactivity for HTML Widgets
crossurr Cross-Fitting for Doubly Robust Evaluation of
High-Dimensional Surrogate Markers
crossval Generic Functions for Cross Validation
crossvalidationCP Cross-Validation for Change-Point Regression
crosswalkr Rename and Encode Data Frames Using External
Crosswalk Files
crov Constrained Regression Model for an Ordinal
Response and Ordinal Predictors
crqa Unidimensional and Multidimensional Methods for
Recurrence Quantification Analysis
crrSC Competing Risks Regression for Stratified and
Clustered Data
crrcbcv Bias-Corrected Variance for Competing Risks
Regression with Clustered Data
crrstep Stepwise Covariate Selection for the Fine &
Gray Competing Risks Regression Model
crs Categorical Regression Splines
crseEventStudy A Robust and Powerful Test of Abnormal Stock
Returns in Long-Horizon Event Studies
crsmeta Extract Coordinate System Metadata
crsnls Nonlinear Regression Parameters Estimation by
'CRS4HC' and 'CRS4HCe'
crstools Tools to Work with Projections
crsuggest Obtain Suggested Coordinate Reference System
Information for Spatial Data
crt2power Designing Cluster-Randomized Trials with Two
Continuous Co-Primary Outcomes
crul HTTP Client
crumble Flexible and General Mediation Analysis Using
Riesz Representers
crunch Crunch.io Data Tools
cruts Interface to Climatic Research Unit Time-Series
Version 3.21 Data
crwbmetareg Cluster Robust Wild Bootstrap Meta Regression
cry Statistics for Structural Crystallography
crypto2 Download Crypto Currency Data from
'CoinMarketCap' without 'API'
cryptoQuotes Open Access to Cryptocurrency Market Data,
Sentiment Indicators and Interactive Charts
cryptography Encrypts and Decrypts Text Ciphers
cryptorng Access System Cryptographic Pseudorandom Number
Generators
cryptotrackr An Interface to Crypto Data Sources
cryptoverse Visualization and Analytics for the Cryptoverse
cryptowatchR An API Wrapper for 'Cryptowatch'
crystract Crystallographic Information File (CIF) Data
Processing Tools
csa A Cross-Scale Analysis Tool for
Model-Observation Visualization and Integration
csalert Alerts from Public Health Surveillance Data
csampling Functions for Conditional Simulation in
Regression-Scale Models
csaw ChIP-Seq Analysis with Windows
csbewma Cumulative Standardized Binomial EWMA for
Multiple Stream Processes
csci Current Status Confidence Intervals
csdata Structural Data for Norway
csdb An Abstracted System for Easily Working with
Databases with Large Datasets
csdm Cross-Sectional Dependence Models
csemGT Conditional Standard Error of Measurement in
Generalizability Theory
cshapes The CShapes 2.0 Dataset and Utilities
csmGmm Conditionally Symmetric Multidimensional
Gaussian Mixture Model
csmaps Preformatted Maps of Norway that Don't Need
Geolibraries
csmbuilder A Collection of Tools for Building Cropping
System Models
csmpv Biomarker Confirmation, Selection, Modelling,
Prediction, and Validation
csn Closed Skew-Normal Distribution
csodata Download Data from the CSO 'PxStat' API
cspp A Tool for the Correlates of State Policy
Project Data
csppData Data Only: The Correlates of State Policy
Project Dataset
csquares Concise Spatial Query and Representation System
(c-Squares)
csranks Statistical Tools for Ranks
cssTools Cognitive Social Structure Tools
cstab Selection of Number of Clusters via Normalized
Clustering Instability
cstidy Helpful Functions for Cleaning Surveillance
Data
cstime Date and Time Functions for Public Health
Purposes
csurvey Constrained Regression for Survey Data
csutil Common Base-R Problems Relating to Lists
csv Read and Write CSV Files with Selected
Conventions
csvread Fast Specialized CSV File Loader
csvwr Read and Write CSV on the Web (CSVW) Tables and
Metadata
csvy Import and Export CSV Data with a YAML Metadata
Header
ctablerseh Processing Survey Data with Confidence
Intervals Like 'SPSS' Software
ctbi A Procedure to Clean, Decompose and Aggregate
Timeseries
ctf Read and Write Column Text Format (CTF)
ctgdist Likert Category Distance Calculator
ctgt Closed Testing with Globaltest for Pathway
Analysis
cthist Clinical Trial Registry History
cthreshER Continuous Threshold Expectile Regression
ctl Correlated Trait Locus Mapping
ctlr Clinical Tolerance Limits for Assessing
Agreement
ctmcd Estimating the Parameters of a Continuous-Time
Markov Chain from Discrete-Time Data
ctmcmove Modeling Animal Movement with Continuous-Time
Discrete-Space Markov Chains
ctmle Collaborative Targeted Maximum Likelihood
Estimation
ctmm Continuous-Time Movement Modeling
ctmva Continuous-Time Multivariate Analysis
ctoclient A Modern and Flexible Data Pipeline for
'SurveyCTO'
ctqr Censored and Truncated Quantile Regression
ctrdata Retrieve and Analyze Clinical Trials Data from
Public Registers
ctrialsgov Query Data from U.S. National Library of
Medicine's Clinical Trials Database
ctrlGene Assess the Stability of Candidate Housekeeping
Genes
ctrlvee Extract External 'R' Code and Insert Inline
cts Continuous Time Autoregressive Models
ctsem Continuous Time Structural Equation Modelling
ctsemOMX Continuous Time Structural Equation Modelling -
Old 'OpenMx'-Based Version
ctsfeatures Analyzing Categorical Time Series
ctsmTMB Continuous Time Stochastic Modelling using
Template Model Builder
ctv CRAN Task Views
ctxR Utilities for Interacting with the 'CTX' APIs
ctypesio Read and Write Standard 'C' Types from Files,
Connections and Raw Vectors
cuRe Parametric Cure Model Estimation
cubar Codon Usage Bias Analysis
cubature Adaptive Multivariate Integration over
Hypercubes
cubble A Vector Spatio-Temporal Data Structure for
Data Analysis
cubelyr A Data Cube 'dplyr' Backend
cubeview View 3D Raster Cubes Interactively
cubfits Codon Usage Bias Fits
cubicBsplines Computation of a Cubic B-Spline Basis and Its
Derivatives
cubing Rubik's Cube Solving
cucumber Behavior-Driven Development for R
cuda.ml R Interface for the RAPIDS cuML Suite of
Libraries
cultevo Tools, Measures and Statistical Tests for
Cultural Evolution
cumprinc Functions Centered Around Microsoft Excel
Cumprinc Function
cumulcalib Cumulative Calibration Assessment for
Prediction Models
cuperdec Cumulative Percent Decay Curve Generator
curephEM NPMLE for Logistic-Cox Cure-Rate Model
cureplots CURE (Cumulative Residual) Plots
curesurv Mixture and Non Mixture Parametric Cure Models
to Estimate Cure Indicators
curl A Modern and Flexible Web Client for R
currencyapi Client for the 'currencyapi.com' Currency
Conversion API
currentSurvival Estimation of CCI and CLFS Functions
curriculr Data-Driven CVs with 'Quarto' and 'Typst'
currr Apply Mapping Functions in Frequent Saving
curry Partial Function Application with %<%, %-<%,
and %><%
cursr Cursor and Terminal Manipulation
curtailment Finds Binary Outcome Designs Using Stochastic
Curtailment
curvHDR Filtering of Flow Cytometry Samples
curveDepth Tukey Curve Depth and Distance in the Space of
Curves
curves Model-Agnostic Response Curves for Fitted
Models
curvir Specify Reserve Demand Curves
cusp Cusp-Catastrophe Model Fitting Using Maximum
Likelihood
custom.gauss.quad Custom Made Gauss Quadrature Nodes and Weights
customiser Use R Markdown to Write your "Rprofile"
customizedTraining Customized Training for Lasso and Elastic-Net
Regularized Generalized Linear Models
customknitrender Easily Switch Output Format of 'Rmarkdown'
Files with Shared Frontmatter
cusumcharter Easier CUSUM Control Charts
cutoff Seek the Significant Cutoff Value
cutpoint Estimate Cutpoints of Metric Variables in the
Context of Cox Regression
cutpointr Determine and Evaluate Optimal Cutpoints in
Binary Classification Tasks
cv Cross-Validating Regression Models
cvAUC Cross-Validated Area Under the ROC Curve
Confidence Intervals
cvCovEst Cross-Validated Covariance Matrix Estimation
cvGEE Cross-Validated Predictions from GEE
cvLM Cross-Validation for Linear and Ridge
Regression Models
cvTools Cross-Validation Tools for Regression Models
cvap Citizen Voting Age Population
cvar Compute Expected Shortfall and Value at Risk
for Continuous Distributions
cvasi Calibration, Validation, and Simulation of TKTD
Models
cvcqv Coefficient of Variation (CV) with Confidence
Intervals (CI)
cvcrand Efficient Design and Analysis of Cluster
Randomized Trials
cvdprevent Access and Analyse Data from the 'CVD Prevent'
API
cvequality Tests for the Equality of Coefficients of
Variation from Multiple Groups
cvmaPLFAM Cross-Validation Model Averaging for Partial
Linear Functional Additive Models
cvmdisc Cramer von Mises Tests for Discrete or Grouped
Distributions
cvmgof Cramer-von Mises Goodness-of-Fit Tests
cvms Cross-Validation for Model Selection
cvsem SEM Model Comparison with K-Fold
Cross-Validation
cwot Cauchy Weighted Joint Test for Pharmacogenetics
Analysis
cxr A Toolbox for Modelling Species Coexistence in
R
cxxfunplus Extend 'cxxfunction' by Saving the Dynamic
Shared Objects
cyclestreets Cycle Routing and Data for Cycling Advocacy
cyclocomp Cyclomatic Complexity of R Code
cycloids Tools for Calculating Hypocycloids,
Epicycloids, Hypotrochoids, and Epitrochoids
cyclomort Survival Modeling with a Periodic Hazard
Function
cyclotomic The Field of Cyclotomic Numbers
cyjShiny Cytoscape.js Shiny Widget (cyjShiny)
cylcop Circular-Linear Copulas with Angular Symmetry
for Movement Data
cymruservices Query 'Team Cymru' 'IP' Address, Autonomous
System Number ('ASN'), Border Gateway Protocol
('BGP'), Bogon and 'Malware' Hash Data Services
cyphr High Level Encryption Wrappers
cystiSim Agent-Based Model for Taenia_solium
Transmission and Control
cytofan Plot Fan Plots for Cytometry Data using
'ggplot2'
cytolib C++ infrastructure for representing and
interacting with the gated cytometry data
cytometree Automated Cytometry Gating and Annotation
cytominer Methods for Image-Based Cell Profiling
czechrates Czech Interest & Foreign Exchange Rates
czso Use Open Data from the Czech Statistical Office
in R
d3Network Tools for creating D3 JavaScript network, tree,
dendrogram, and Sankey graphs from R
d3Tree Create Interactive Collapsible Trees with the
JavaScript 'D3' Library
d3plus Seamless 'D3Plus' Integration
d3po Fast and Beautiful Interactive Visualization
for 'Markdown' and 'Shiny'
d3r 'd3.js' Utilities for R
d4storagehub4R Interface to 'D4Science' 'StorageHub' API
dBlockmodeling Deterministic Blockmodeling of Signed, One-Mode
and Two-Mode Networks
dCUR Dimension Reduction with Dynamic CUR
dChipIO Methods for Reading dChip Files
dCovTS Distance Covariance and Correlation for Time
Series Analysis
dHSIC Independence Testing via Hilbert Schmidt
Independence Criterion
dLagM Time Series Regression Models with Distributed
Lag Models
dMod Dynamic Modeling and Parameter Estimation in
ODE Models
dMrs Competing Risk in Dependent Net Survival
Analysis
dPCP Automated Analysis of Multiplex Digital PCR
Data
dQTG.seq A BSA Software for Detecting All Types of QTLs
in BC, DH, RIL and F2
dRiftDM Estimating (Time-Dependent) Drift Diffusion
Models
dSTEM Multiple Testing of Local Extrema for Detection
of Change Points
dTBM Multi-Way Spherical Clustering via
Degree-Corrected Tensor Block Models
daarem Damped Anderson Acceleration with Epsilon
Monotonicity for Accelerating EM-Like Monotone
Algorithms
dabestr Data Analysis using Bootstrap-Coupled
Estimation
dabr Database Management with R
dacc Detection and Attribution Analysis of Climate
Change
dad Three-Way / Multigroup Data Analysis Through
Densities
dada2 Accurate, high-resolution sample inference from
amplicon sequencing data
dadjoke Displays a Dad Joke
dadjokeapi Return a Random Dad Joke
dados Translate Datasets to Portuguese
dae Functions Useful in the Design and ANOVA of
Experiments
daewr Design and Analysis of Experiments with R
daff Diff, Patch and Merge for Data.frames
dafs Data Analysis for Forensic Scientists
dagHMM Directed Acyclic Graph HMM with TAN Structured
Emissions
dagR Directed Acyclic Graphs: Analysis and Data
Simulation
dagirlite Spatial Vector Data for Danmarks Administrative
Geografiske Inddeling DAGI
dagitty Graphical Analysis of Structural Causal Models
dagwood DAGs with Omitted Objects Displayed (DAGWOOD)
daiR Interface with Google Cloud Document AI API
dail Data from Access to Information Law
daiquiri Data Quality Reporting for Temporal Datasets
daltoolbox Leveraging Experiment Lines to Data Analytics
daltoolboxdp Deep Python Extensions for 'daltoolbox'
dam Data Analysis Metabolomics
damAOI Create an 'Area of Interest' Around a
Constructed Dam for Comparative Impact
Evaluations
dampack Decision-Analytic Modeling Package
damr Interface to Drosophila Activity Monitor System
Result Files
dang 'Dang' Associated New Goodies
dani Design and Analysis of Non-Inferiority Trials
dann Discriminant Adaptive Nearest Neighbor
Classification
dapper Data Augmentation for Private Posterior
Estimation
daqapo Data Quality Assessment for Process-Oriented
Data
darksky Tools to Work with the 'Dark Sky' 'API'
dartR Importing and Analysing 'SNP' and 'Silicodart'
Data Generated by Genome-Wide Restriction
Fragment Analysis
dartR.base Analysing 'SNP' and 'Silicodart' Data - Basic
Functions
dartR.captive Analysing 'SNP' Data to Support Captive
Breeding
dartR.data Auxiliary Data Package for Our Main Package
'dartR'
dartR.popgen Analysing 'SNP' and 'Silicodart' Data Generated
by Genome-Wide Restriction Fragment Analysis
dartR.sexlinked Analysing SNP Data to Identify Sex-Linked
Markers
dartR.sim Computer Simulations of 'SNP' Data
dartR.spatial Applying Landscape Genomic Methods on 'SNP' and
'Silicodart' Data
dartRverse Install and Load the 'dartRverse' Suits of
Packages
dashboardthemes Customise the Appearance of 'shinydashboard'
Applications using Themes
dat Tools for Data Manipulation
data.checker Data Checker for Validating Data Frames Against
Defined Schema
data.table Extension of `data.frame`
data.table.threads Analyze Multi-Threading Performance for
'data.table' Functions
data.tree General Purpose Hierarchical Data Structure
data.validator Automatic Data Validation and Reporting
data360r Wrapper for 'TCdata360' and 'Govdata360' API
dataCompare A 'shiny' App to Compare Two Data Frames
dataMaid A Suite of Checks for Identification of
Potential Errors in a Data Frame as Part of the
Data Screening Process
dataMojo Reshape Data Table
dataPreparation Automated Data Preparation
dataReporter Reproducible Data Screening Checks and Report
of Possible Errors
dataRetrieval Retrieval Functions for USGS and EPA Hydrology
and Water Quality Data
dataSDA Datasets and Basic Statistics for Symbolic Data
Analysis
datacleanr Interactive and Reproducible Data Cleaning
datacommons Client for the 'Google Data Commons API V2'
datacult Exploratory Data Analysis for Public Policy
Applied to Culture
datacutr SDTM Datacut
datadictionary Create a Data Dictionary
datadiff Data Validation Based on YAML Rules
datadogr R Client for 'Datadog' API
datadriftR Concept Drift Detection Methods for Stream Data
dataframeexplorer Familiarity with Dataframes Before Data
Manipulation
datafsm Estimating Finite State Machine Models from
Data
datamedios Scraping Chilean Media
datamods Modules to Import and Manipulate Data in
'Shiny'
datamuseum Spatial and Taxonomic Data Utilities for
Specimen Datasets
datana Datasets and Functions to Accompany Analisis De
Datos Con R
datanugget Create, and Refine Data Nuggets
dataonderivatives Easily Source Publicly Available Data on
Derivatives
dataone R Interface to the 'DataONE' REST API
datapack A Flexible Container to Transport and
Manipulate Data and Associated Resources
datapackage Creating and Reading Data Packages
datapasta R Tools for Data Copy-Pasta
dataprep Efficient and Flexible Data Preprocessing Tools
dataquieR Data Quality in Epidemiological Research
datardis Data from the Doctor Who Series
datareportR Fast Data Summary Reports
dataresqc C3S Quality Control Tools for Historical
Climate Data
datarium Data Bank for Statistical Analysis and
Visualization
datarobot 'DataRobot' Predictive Modeling API
datasauRus Datasets from the Datasaurus Dozen
dataseries Switzerland's Data Series in One Place
dataset Create Data Frames for Exchange and Reuse
datasetjson Read and Write CDISC Dataset JSON Files
datasets.load Graphical Interface for Loading Datasets
datasetsICR Datasets from the Book "An Introduction to
Clustering with R"
dataspice Create Lightweight Schema.org Descriptions of
Data
datastat Dataset for Statistical Analysis
datasusr Fast Access to Brazilian Public Health Data
from 'DATASUS'
dataverifyr A Lightweight, Flexible, and Fast Data
Validation Package that Can Handle All Sizes of
Data
dataverse Client for Dataverse 4+ Repositories
dataviewR An Interactive and Feature-Rich Data Viewer
datawizard Easy Data Wrangling and Statistical
Transformations
datazoom.amazonia Simplify Access to Data from the Amazon Region
datazoom.social Simplify Access to Brazilian Social Data
date Functions for Handling Dates
date4ts Wrangle and Modify Ts Object with Classic
Frequencies and Exact Dates
dateback Collect and Install R Packages on a Specified
Date with Dependencies
datefixR Standardize Dates in Different Formats or with
Missing Data
daterangepicker Create a Shiny Date-Range Input
datetime Nominal Dates, Times, and Durations
datetimeoffset Datetimes with Optional UTC Offsets and/or
Heterogeneous Time Zones
datetimeutils Utilities for Dates and Times
datetoiso Convert and Impute Dates to ISO 8601 Format and
Reconcile Data Sets
dateutils Date Utils
datoramar Interface to the 'Datorama' API
datos Traduce al Español Varios Conjuntos de Datos de
Práctica
datplot Preparation of Object Dating Ranges for Density
Plots (Aoristic Analysis)
datr 'Dat' Protocol Interface
datrProfile Column Profile for Tables and Datasets
dauR Datasets for "Sampling and Data Analysis Using
R: Theory and Practice"
dauphin Compact Standard for Australian Phone Numbers
dawaR An API Wrapper for 'DAWA' - 'The Danish Address
Web API'
dawai Discriminant Analysis with Additional
Information
daySupply Calculating Days' Supply and Daily Dose of
Prescriptions
daymetr Interface to the 'Daymet' Web Services
days2lessons Distributes Teachers Lessons On Days in a
Balanced Manner
db2pq Export Database Tables to 'Parquet'
dbGaPCheckup dbGaP Checkup
dbMC Confidence Interval for Matrix Completion via
De-Biased Estimator
dbMatrix Database-Backed Matrix Classes and Operations
dbProject Database Connection Management and Utilities
for 'dbverse'
dbSpatial Spatial Data Operations for Database-Backed
Geometries
dbWebForms Produce R Functions to Create HTML Forms Based
on SQL Meta Data
dbacf Autocovariance Estimation via Difference-Based
Methods
dbarts Discrete Bayesian Additive Regression Trees
Sampler
dbd Discretised Beta Distribution
dbglm Generalised Linear Models by Subsampling and
One-Step Polishing
dbhydroR 'DBHYDRO' Hydrologic and Water Quality Data
dbi.table Database Queries Using 'data.table' Syntax
dblcens Compute the NPMLE of Distribution Function from
Doubly Censored Data, Plus the Empirical
Likelihood Ratio for F(T)
dbmss Distance-Based Measures of Spatial Structures
dbnR Dynamic Bayesian Network Learning and Inference
dbnlearn Dynamic Bayesian Network Structure Learning,
Parameter Learning and Forecasting
dbparser Drugs Databases Parser
dbplot Simplifies Plotting Data Inside Databases
dbplyr A 'dplyr' Back End for Databases
dbrobust Robust Distance-Based Visualization and
Analysis of Mixed-Type Data
dbscan Density-Based Spatial Clustering of
Applications with Noise (DBSCAN) and Related
Algorithms
dbstats Distance-Based Statistics
dbw Doubly Robust Distribution Balancing Weighting
Estimation
dbx A Fast, Easy-to-Use Database Interface
dc3net Inferring Condition-Specific Networks via
Differential Network Inference
dcTensor Discrete Matrix/Tensor Decomposition
dcce Dynamic Common Correlated Effects Estimation
for Panel Data
dccmidas DCC Models with GARCH and GARCH-MIDAS
Specifications in the Univariate Step,
RiskMetrics, Moving Covariance and Scalar and
Diagonal BEKK Models
dccpp Fast Computation of Distance Correlations
dceasimR Distributional Cost-Effectiveness Analysis for
Health Technology Assessment
dci Calculate the Dendritic Connectivity Index in
River Networks
dcifer Genetic Relatedness Between Polyclonal
Infections
dclone Data Cloning and MCMC Tools for Maximum
Likelihood Methods
dclust Divisive Hierarchical Clustering
dcm2 Calculating the M2 Model Fit Statistic for
Diagnostic Classification Models
dcmdata Data Sets for Diagnostic Classification
Modeling
dcmle Hierarchical Models Made Easy with Data Cloning
dcmodify Modify Data Using Externally Defined
Modification Rules
dcmstan Generate 'Stan' Code for Diagnostic
Classification Models
dcorBSS Distance-Correlation Based Methods for Blind
Source Separation and Dependence Analysis
dcorVS Variable Selection Algorithms Using the
Distance Correlation
dcortools Providing Fast and Flexible Functions for
Distance Correlation Analysis
dcov A Fast Implementation of Distance Covariance
dcsvm Density Convoluted Support Vector Machines
dcurver Utility Functions for Davidian Curves
dcurves Decision Curve Analysis for Model Evaluation
dcvar Dynamic Copula VAR Models for Time-Varying
Dependence
ddModel The Decision Diffusion Model
dda Direction Dependence Analysis
ddalpha Depth-Based Classification and Calculation of
Data Depth
ddc Distance Density Clustering Algorithm
dde Solve Delay Differential Equations
ddecompose Detailed Distributional Decomposition
ddi The Data Defect Index for Samples that May not
be IID
ddiv Data Driven I-v Feature Extraction
ddml Double/Debiased Machine Learning
ddp Desirable Dietary Pattern
ddpca Diagonally Dominant Principal Component
Analysis
ddpcr Analysis and Visualization of Droplet Digital
PCR in R and on the Web
ddplot Create D3 Based SVG Graphics
ddsPLS Data-Driven Sparse Partial Least Squares
ddst Data Driven Smooth Tests
ddtlcm Latent Class Analysis with Dirichlet Diffusion
Tree Process Prior
deBInfer Bayesian Inference for Differential Equations
deBif Bifurcation Analysis of Ordinary Differential
Equation Systems
deFit Fitting Differential Equations to Time Series
Data
deSolve Solvers for Initial Value Problems of
Differential Equations ('ODE', 'DAE', 'DDE')
deTS Tissue-Specific Enrichment Analysis
deaR Conventional and Fuzzy Data Envelopment
Analysis
deadband Statistical Deadband Algorithms Comparison
deadwood Outlier Detection via Trimming of Mutual
Reachability Minimum Spanning Trees
deal Learning Bayesian Networks with Mixed Variables
dearseq Differential Expression Analysis for RNA-seq
data through a robust variance component test
debar A Post-Clustering Denoiser for COI-5P Barcode
Data
debest Duration Estimation for Biomarker Enrichment
Studies and Trials
debiasedTrialEmulation
Pipeline for Debiased Target Trial Emulation
debkeepr Analysis of Non-Decimal Currencies and
Double-Entry Bookkeeping
debrief Text-Based Summaries for 'profvis' Profiling
Data
debtkit Debt Sustainability Analysis and Fiscal Risk
Assessment
debugme Debug R Packages
debugr Debug Tool to Watch Objects/Expressions While
Running an R Script
decido Bindings for 'Mapbox' Ear Cutting Triangulation
Library
decision Statistical Decision Analysis
decisionSupport Quantitative Support of Decision Making under
Uncertainty
decisionpaths Construct and Audit Longitudinal Decision Paths
deckgl An R Interface to 'deck.gl'
deckroadmap Roadmap Footers for 'Reveal.js' Slides in
'Quarto' and 'R Markdown'
declared Functions for Declared Missing Values
decode Differential Co-Expression and Differential
Expression Analysis
decoder Decode Coded Variables to Plain Text and the
Other Way Around
decompML Decomposition Based Machine Learning Model
decomposedPSF Time Series Prediction with PSF and
Decomposition Methods (EMD and EEMD)
decompositionLE Provides Easy Methods to Perform Life
Expectancy Decomposition
decompr Global Value Chain Decomposition
decontam Identify Contaminants in Marker-gene and
Metagenomics Sequencing Data
deconvolveR Empirical Bayes Estimation Strategies
decor Retrieve Code Decorations
decorators Extend the Behaviour of a Function without
Explicitly Modifying it
decorrelate Decorrelation Projection Scalable to High
Dimensional Data
decoupleR decoupleR: Ensemble of computational methods to
infer biological activities from omics data
decp Complete Change Point Analysis
deducorrect Deductive Correction, Deductive Imputation, and
Deterministic Correction
deductive Data Correction and Imputation Using Deductive
Methods
deduped Making "Deduplicated" Functions
dedupewider Deduplication Across Multiple Columns
deep A Neural Networks Framework
deepImp Imputation with Deep Learning Methods
deepMOU Clustering of Short Texts by Mixture of
Unigrams and Its Deep Extensions
deepNN Deep Learning
deepRstudio Seamless Language Translation in 'RStudio'
using 'DeepL' API and 'Rstudioapi'
deepSTRAPP Test for Differences in Diversification Rates
over Time
deepdep Visualise and Explore the Deep Dependencies of
R Packages
deepgmm Deep Gaussian Mixture Models
deepgp Bayesian Deep Gaussian Processes using MCMC
deeplr Interface to the 'DeepL' Translation API
deepnet Deep Learning Toolkit in R
deepspat Deep Compositional Spatial Models
deeptime Plotting Tools for Anyone Working in Deep Time
deeptimedata Geologic Pattern Data from FGDC Used in
'deeptime'
default Change the Default Arguments in R Functions
defineOptions Define and Parse Command Line Options
defineR Creates Define XML Documents
deflateBR Deflate Nominal Brazilian Reais
deflist Deferred List - A Read-Only List-Like Object
with Deferred Access
defm Estimation and Simulation of Multi-Binary
Response Models
deforestable Classify RGB Images into Forest or Non-Forest
deform Spatial Deformation and Dimension Expansion
Gaussian Processes
degday Compute Degree Days
degradr Estimating Remaining Useful Life with Linear
Mixed Effects Models
degreenet Models for Skewed Count Distributions Relevant
to Networks
degross Density Estimation from GROuped Summary
Statistics
deident Persistent Data Anonymization Pipeline
dejaVu Multiple Imputation for Recurrent Events
delaydiscount Fit Linearized Hyperbolic Model for Delay
Discounting Curves
delayed A Framework for Parallelizing Dependent Tasks
deldir Delaunay Triangulation and Dirichlet (Voronoi)
Tessellation
deliberr Methods for Deliberation Analysis
delimtools Helper Functions for Species Delimitation
Analysis
delma Convert 'R Markdown' and 'Quarto' Documents to
Ecological Metadata Language
deltaPlotR Identification of Dichotomous Differential Item
Functioning (DIF) using Angoff's Delta Plot
Method
deltaccd Quantify Rhythmic Gene Co-Expression Relative
to a Reference
deltapif Estimate Potential Impact and Population
Attributable Fractions with Aggregated Data
deltatest Statistical Hypothesis Testing Using the Delta
Method
dematel Decision Making Trial and Evaluation Laboratory
Technique in R
deming Deming, Theil-Sen, Passing-Bablock and Total
Least Squares Regression
demoKde Kernel Density Estimation for Demonstration
Purposes
demoShiny Runs a 'Shiny' App as Demo or Lists All Demo
'Shiny' Apps
demodelr Simulating Differential Equations with Data
demofit Parametric Mortality Curve Fitting and
Mortality Forecasting Tools
demogR Analysis of Age-Structured Demographic Models
demography Forecasting Mortality, Fertility, Migration and
Population Data
demor Methods for Demographic Analysis
demovuln Demographic Vulnerability Metrics for Matrix
Population Models
demulticoder Simultaneous Analysis of Multiplexed
Metabarcodes
dendRoAnalyst A Tool for Processing and Analyzing Dendrometer
Data
dendextend Extending 'dendrogram' Functionality in R
dendroNetwork Create Networks of Dendrochronological Series
using Pairwise Similarity
dendroTools Linear and Nonlinear Methods for Analyzing
Daily and Monthly Dendroclimatological Data
dendroextras Extra Functions to Cut, Label and Colour
Dendrogram Clusters
dendrometeR Analyzing Dendrometer Data
dendrometry Forest Estimations and Dendrometric
Computations
dendsort Modular Leaf Ordering Methods for Dendrogram
Nodes
denguedatahub A Tidy Format Datasets of Dengue by Country
denim Generate and Simulate Deterministic
Compartmental Models
denoiSeq Differential Expression Analysis Using a
Bottom-Up Model
denovolyzeR Statistical Analyses of De Novo Genetic
Variants
densEstBayes Density Estimation via Bayesian Inference
Engines
denseFLMM Functional Linear Mixed Models for Densely
Sampled Data
densitr Analysing Density Profiles from Resistance
Drilling of Trees
densityClust Clustering by Fast Search and Find of Density
Peaks
densityarea Polygons of Bivariate Density Distributions
densityratio Distribution Comparison Through Density Ratio
Estimation
densratio Density Ratio Estimation
denstest Density Equality Testing
denstrip Density Strips and Other Methods for Compactly
Illustrating Distributions
dentomedical Publication-Ready Descriptive, Bivariate,
Regression, Correlation and Diagnostic Accuracy
Tools for Medical and Dental Data
denvax Simple Dengue Test and Vaccinate Cost
Thresholds
depCensoring Statistical Methods for Survival Data with
Dependent Censoring
depcache Cache R Expressions, Taking Their Dependencies
into Account
depcoeff Dependency Coefficients
depend.truncation Statistical Methods for the Analysis of
Dependently Truncated Data
dependentsimr Simulate Omics-Scale Data with Dependency
depmixS4 Dependent Mixture Models - Hidden Markov Models
of GLMs and Other Distributions in S4
depower Power Analysis for Differential Expression
Studies
deprivateR Calculating and Analyzing Measures of
Deprivation in the United States
deps Dependency Management with 'roxygen'-Style
Comments
depth.plot Multivariate Analogy of Quantiles
depthTools Depth Tools Package
derivmkts Functions and R Code to Accompany Derivatives
Markets
desc Manipulate DESCRIPTION Files
descomponer Seasonal Adjustment by Frequency Analysis
descr Descriptive Statistics
describedata Miscellaneous Descriptive Functions
describer Describe Data in R Using Common Descriptive
Statistics
descriptio Descriptive Statistical Analysis
descriptr Generate Descriptive Statistics
descstat Tools for Descriptive Statistics
descstatsr Descriptive Univariate Statistics
descsuppR Support Functions for (Reproducible)
Descriptive Statistics
descsuppRplots Generate Plots for All Variables in Descriptive
Tables
desctable Produce Descriptive and Comparative Tables
Easily
descutils Utilities for Describing and Comparing Data
deseats Data-Driven Locally Weighted Regression for
Trend and Seasonality in TS
desiR Desirability Functions for Ranking, Selecting,
and Integrating Data
designer 'Shiny' UI Prototype Builder
designit Blocking and Randomization for Experimental
Design
designmatch Matched Samples that are Balanced and
Representative by Design
designr Balanced Factorial Designs
designsize Sample Size Calculation of Various Study
Designs
desirability Function Optimization and Ranking via
Desirability Functions
desirability2 Desirability Functions for Multiparameter
Optimization
desk Didactic Econometrics Starter Kit
desla Desparsified Lasso Inference for Time Series
despair Motivational Quotes and Shakespearean Bard–bits
for Personal Projects
desplot Plotting Field Plans for Agricultural
Experiments
details Create Details HTML Tag for Markdown and
Package Documentation
detect Analyzing Wildlife Data with Detection Error
detectR Change Point Detection
detectRUNS Detect Runs of Homozygosity and Runs of
Heterozygosity in Diploid Genomes
detectXOR XOR Pattern Detection and Visualization
detectnorm Detect Nonnormality in Meta-Analysis without
Raw Data
detector Detect Data Containing Personally Identifiable
Information
detectors Prediction Data from GPT Detectors
detectseparation Detect and Check for Separation and Infinite
Maximum Likelihood Estimates
detourr Portable and Performant Tour Animations
detpack Density Estimation and Random Number Generation
with Distribution Element Trees
detrendeR A Graphical User Interface (GUI) to Visualize
and Analyze Dendrochronological Data
detrendr Detrend Images
detzrcr Compare Detrital Zircon Suites
devEMF EMF Graphics Output Device
devFunc Clear and Condense Argument Check for
User-Defined Functions
devRate Quantify the Relationship Between Development
Rate and Temperature in Ectotherms
devianLM Detecting Extremal Values in a Normal Linear
Model
devoid A Graphic Device that Does Nothing
devtools Tools to Make Developing R Packages Easier
dexisensitivity 'DEXi' Decision Tree Analysis and Visualization
dexter Data Management and Analysis of Tests
dextergui A Graphical User Interface for Dexter
df2yaml Convert Dataframe to 'YAML'
dfCompare Compare Two Dataframes and Return Adds,
Changes, and Deletes
dfadjust Degrees of Freedom Adjustment for Robust
Standard Errors
dfcomb Phase I/II Adaptive Dose-Finding Design for
Combination Studies
dfcrm Dose-Finding by the Continual Reassessment
Method
dfeR Common Department for Education Analysis Tasks
dfexpand Automatically Expand Delimited Column Values
into Multiple Binary Columns with 'dfexpand'
dfidx Indexed Data Frames
dfmirroR Simulate a Data Frame Mirroring an Input and
Produce Shareable Simulation Code
dfms Dynamic Factor Models
dfmta Phase I/II Adaptive Dose-Finding Design for MTA
dfoliatR Detection and Analysis of Insect Defoliation
Signals in Tree Rings
dfoptim Derivative-Free Optimization
dformula Data Manipulation using Formula
dfphase1 Phase I Control Charts (with Emphasis on
Distribution-Free Methods)
dfr Dual Feature Reduction for SGL
dfrr Dichotomized Functional Response Regression
dfsaneacc Accelerated Derivative-Free Method for
Large-Scale Nonlinear Systems of Equations
dfvad Diewert and Fox's Method of Value Added Growth
Decomposition
dga Capture-Recapture Estimation using Bayesian
Model Averaging
dggridR Discrete Global Grids
dglars Differential Geometric Least Angle Regression
dglm Double Generalized Linear Models
dgof Discrete Goodness-of-Fit Tests
dgpsi Interface to 'dgpsi' for Deep and Linked
Gaussian Process Emulations
dhga Differential Hub Gene Analysis
dhglm Double Hierarchical Generalized Linear Models
dhmeasures Digital History Measures
dhsage Reproductive Age Female Data of Various
Demographic Health Surveys
di Deficit Index (DI)
diagFDR Verifiable FDR Diagnostics for Proteomics
diagL1 Routines for Fit, Inference and Diagnostics in
Linear L1 and LAD Models
diagcounts Recover Diagnostic Test Accuracy Counts from
Reported Accuracy Measures
diagis Diagnostic Plot and Multivariate Summary
Statistics of Weighted Samples from Importance
Sampling
diagmeta Meta-Analysis of Diagnostic Accuracy Studies
with Several Cutpoints
diagonals Block Diagonal Extraction or Replacement
diagram Functions for Visualising Simple Graphs
(Networks), Plotting Flow Diagrams
dialr Parse, Format, and Validate International Phone
Numbers
dialrjars Required 'libphonenumber' jars for the 'dialr'
Package
dials Tools for Creating Tuning Parameter Values
diaplt Beads Summary Plot of Ranges
diario 'R' Interface to the 'Diariodeobras'
Application
diathor Calculate Ecological Information and Diatom
Based Indices
dibble Dimensional Data Frames
dice Calculate probabilities of various dice-rolling
events
diceR Diverse Cluster Ensemble in R
diceplot High Dimensional Categorical Data Visualization
dichromat Color Schemes for Dichromats
dictionaRy Retrieve the Dictionary Definitions of English
Words
did Treatment Effects with Multiple Periods and
Groups
did2s Two-Stage Difference-in-Differences Following
Gardner (2021)
didec Directed Dependence Coefficient
didimputation Imputation Estimator from Borusyak, Jaravel,
and Spiess (2021)
didrooRFM Compute Recency Frequency Monetary Scores for
your Customer Data
diegr Dynamic and Interactive EEG Graphics
diemr Genome Polarization via Diagnostic Index
Expectation Maximization
dietr Diet Estimated Trophic Levels
diezeit R Interface to the ZEIT ONLINE Content API
difNLR DIF and DDF Detection by Non-Linear Regression
Models
difR Collection of Methods to Detect Dichotomous,
Polytomous, and Continuous Differential Item
Functioning (DIF)
difconet Differential Coexpressed Networks
diffEnrich Given a List of Gene Symbols, Performs
Differential Enrichment Analysis
diffHic Differential Analysis of Hi-C Data
diffIRT Diffusion IRT Models for Response and Response
Time Data
diffMeshGP Multi-Fidelity Computer Experiments Using the
Tuo-Wu-Yu Model
diffcor Fisher's z-Tests Concerning Differences Between
Correlations
diffcp Differentiating Through Cone Programs
diffdf Dataframe Difference Tool
diffdfs Compute the Difference Between Data Frames
diffeR Metrics of Difference for Comparing Pairs of
Maps or Pairs of Variables
diffeqr Solving Differential Equations (ODEs, SDEs,
DDEs, DAEs)
diffmatchpatch String Diff, Match, and Patch Utilities
diffobj Diffs for R Objects
diffpriv Easy Differential Privacy
diffr Display Differences Between Two Files using
Codediff Library
diffusion Forecast the Diffusion of New Products
diffusionMap Diffusion Map
diffval Vegetation Patterns
diffviewer HTML Widget to Show File Differences
digest Create Compact Hash Digests of R Objects
digiNORM Data-Driven Digital PCR Normalization
digiRhythm Analyzing Animal's Rhythmicity
digitTests Tests for Detecting Irregular Digit Patterns
digitalPCR Estimate Copy Number for Digital PCR
dilp Reconstruct Paleoclimate and Paleoecology with
Leaf Physiognomy
dimRed A Framework for Dimensionality Reduction
dimensio Multivariate Data Analysis
dimensionsR Gathering Bibliographic Records from 'Digital
Science Dimensions' Using 'DSL' API
dina Bayesian Estimation of DINA Model
dinamic A Method to Analyze Recurrent DNA Copy Number
Aberrations in Tumors
dineR Differential Network Estimation in R
dineq Decomposition of (Income) Inequality
dint A Toolkit for Year-Quarter, Year-Month and
Year-Isoweek Dates
dipm Depth Importance in Precision Medicine (DIPM)
Method
dipsaus A Dipping Sauce for Data Analysis and
Visualizations
diptest Hartigan's Dip Test Statistic for Unimodality -
Corrected
dipw Debiased Inverse Propensity Score Weighting
dir.expiry Managing Expiration for Cache Directories
dir2json Convert Directory to JSON
directAgeStd Direct Age Standardisation with Confidence
Intervals
directPA Direction Analysis for Pathways and Kinases
directadjusting Directly Adjusted Estimates
directlabels Direct Labels for Multicolor Plots
dirichletprocess Build Dirichlet Process Objects for Bayesian
Modelling
dirmult Estimation in Dirichlet-Multinomial
Distribution
disagg2 Support Functions for Time Series Analysis Book
disaggR Two-Steps Benchmarks for Time Series
Disaggregation
disaggregation Disaggregation Modelling
disagmethod Autoregressive Integrated Moving Average
(ARIMA) Based Disaggregation Methods
disastr.api Wrapper for the UN OCHA ReliefWeb Disaster
Events API
disbayes Bayesian Multi-State Modelling of Chronic
Disease Burden Data
discAUC Linear and Non-Linear AUC for Discounting Data
discFA Discrete Factor Analysis
discSurv Discrete Time Survival Analysis
discfrail Cox Models for Time-to-Event Data with
Nonparametric Discrete Group-Specific Frailties
discharge Fourier Analysis of Discharge Data
disclap Discrete Laplace Exponential Family
disclapmix Discrete Laplace Mixture Inference using the EM
Algorithm
disclapmix2 Mixtures of Discrete Laplace Distributions
using Numerical Optimisation
disclosuR Text Conversion from Nexis Uni PDFs to R Data
Frames
discnorm Test for Discretized Normality in Ordinal Data
discoCVI Implementation of the DISCO Metric for Internal
Clustering Evaluation
discord Functions for Discordant Kinship Modeling
discourseGT Analyze Group Patterns using Graph Theory in
Educational Settings
discoveR Exploratory Data Analysis System
discoverableresearch Checks Title, Abstract and Keywords to Optimise
Discoverability
discovr Interactive Tutorials and Data for "Discovering
Statistics Using R and RStudio"
discretefit Simulated Goodness-of-Fit Tests for Discrete
Distributions
discretes Discrete Numeric Series
discretization Data Preprocessing, Discretization for
Classification
discrim Model Wrappers for Discriminant Analysis
discrtr A Companion Package for the Book "Discrete
Choice Analysis with 'R'"
discursive Measuring Discursive Sophistication in
Open-Ended Survey Responses
disdat Data for Comparing Species Distribution
Modeling Methods
diseasemapping Modelling Spatial Variation in Disease Risk for
Areal Data
diseasystore Feature Stores for the 'diseasy' Framework
dismo Species Distribution Modeling
disordR Non-Ordered Vectors
dispRity Measuring Disparity
dispeRse Simulation of Demic Diffusion with
Environmental Constraints
dispersionIndicators Indicators for the Analysis of Dispersion of
Datasets with Batched and Ordered Samples
displease Numeric and Color Sequences with Non-Linear
Interpolation
dispmod Modelling Dispersion in GLM
disposables Create Disposable R Packages for Testing
dispositionEffect Analysis of Disposition Effect on Financial
Portfolios
disprofas Non-Parametric Dissolution Profile Analysis
dissCqN Multiple Assemblage Dissimilarity for Orders q
= 0-N
dissever Spatial Downscaling using the Dissever
Algorithm
dissimilarities Creating, Manipulating, and Subsetting "dist"
Objects
dist.structure Structured Random Variables for Reliability
System Distributions
distTails A Collection of Full Defined Distribution Tails
distanceHD Distance Metrics for High-Dimensional
Clustering
distances Tools for Distance Metrics
distanceto Calculate Distance to Features
distantia Advanced Toolset for Efficient Time Series
Dissimilarity Analysis
distcomp Computations over Distributed Data without
Aggregation
distcrete Discrete Distribution Approximations
distdichoR Distributional Method for the Dichotomisation
of Continuous Outcomes
distfree.cr Distribution-Free Confidence Region
distfreereg Distribution-Free Goodness-of-Fit Testing for
Regression
distfromq Reconstruct a Distribution from a Collection of
Quantiles
distill 'R Markdown' Format for Scientific and
Technical Writing
distilleR A Wrap Around the 'DistillerSR' APIs
distillery Method Functions for Confidence Intervals and
to Distill Information from an Object
distinctiveness Distinctiveness Centrality
distionary Create and Evaluate Probability Distributions
distops Usual Operations for Distance Matrices in R
distory Distance Between Phylogenetic Histories
distplyr Manipulate and Combine Probability
Distributions
distr Object Oriented Implementation of Distributions
distrDoc Documentation for 'distr' Family of R Packages
distrEllipse S4 Classes for Elliptically Contoured
Distributions
distrEx Extensions of Package 'distr'
distrMod Object Oriented Implementation of Probability
Models
distrRmetrics Distribution Classes for Distributions from
Rmetrics
distrSim Simulation Classes Based on Package 'distr'
distrTEst Estimation and Testing Classes Based on Package
'distr'
distrTeach Extensions of Package 'distr' for Teaching
Stochastics/Statistics in Secondary School
distributional Vectorised Probability Distributions
distributions3 Probability Distributions as S3 Objects
distributionsrd Distribution Fitting and Evaluation
distro Linux Distribution Properties
distrom Distributed Multinomial Regression
distrr Estimate and Manage Empirical Distributions
disttools Distance Object Manipulation Tools
dittoSeq User Friendly Single-Cell and Bulk RNA
Sequencing Visualization
dittoViz User Friendly Data Visualization
dittodb A Test Environment for Database Requests
ditwahLandslide Early Warning Information on Landslides in Sri
Lanka During the Ditwah Storm
divDyn Diversity Dynamics using Fossil Sampling Data
diveMove Dive Analysis and Calibration
diveR Easily Install and Load Interactive Data
Visualization Tools
divent Entropy Partitioning to Measure Diversity
diverge Evolutionary Trait Divergence Between Sister
Species and Other Paired Lineages
diversitree Comparative 'Phylogenetic' Analyses of
Diversification
diversityArch Computes Diversity Indices for Archaeological
Data
diversityForest Innovative Complex Split Procedures in Random
Forests Through Candidate Split Sampling
divest Get Images Out of DICOM Format Quickly
divo Tools for Analysis of Diversity and Similarity
in Biological Systems
divraster Diversity Metrics Calculations for Rasterized
Data
divseg Calculate Diversity and Segregation Indices
divvy Spatial Subsampling of Biodiversity Occurrence
Data
dixon Nearest Neighbour Contingency Table Analysis
dixonTest Dixon's Ratio Test for Outlier Detection
diyar Record Linkage and Epidemiological Case
Definitions in 'R'
dkanr Client for the 'DKAN' API
dlib Allow Access to the 'Dlib' C++ Library
dlim Distributed Lag Interaction Model
dlm Bayesian and Likelihood Analysis of Dynamic
Linear Models
dlmtree Bayesian Treed Distributed Lag Models
dlmwwbe Dynamic Linear Model for Wastewater-Based
Epidemiology
dlnm Distributed Lag Non-Linear Models
dlookr Tools for Data Diagnosis, Exploration,
Transformation
dlr Download and Cache Files Safely
dlsem Distributed-Lag Linear Structural Equation
Models
dlstats Download Stats of R Packages
dm Relational Data Models
dma Dynamic Model Averaging
dmai Divisia Monetary Aggregates Index
dmbc Model Based Clustering of Binary Dissimilarity
Measurements
dmetatools Computational Tools for Meta-Analysis of
Diagnostic Accuracy Test
dml Distance Metric Learning in R
dmm Dyadic Mixed Model for Pedigree Data
dmtools Tools for Clinical Data Management
dmutate Mutate Data Frames with Random Variates
dnafractal Generates a Fractal Image of a DNA Sequence
dndR Dungeons & Dragons Functions for Players and
Dungeon Masters
dng Distributions and Gradients
dnn Deep Neural Network Tools for Probability and
Statistic Models
dnr Simulate Dynamic Networks using Exponential
Random Graph Models (ERGM) Family
do Data Operator
do3PCA Probabilistic Phylogenetic Principal Component
Analysis
doBy Groupwise Statistics, LSmeans, Linear
Estimates, Utilities
doFuture Use Foreach to Parallelize via the Future
Framework
doMC Foreach Parallel Adaptor for 'parallel'
doMPI Foreach Parallel Adaptor for the Rmpi Package
doParabar 'foreach' Parallel Adapter for 'parabar'
Backends
doParallel Foreach Parallel Adaptor for the 'parallel'
Package
doRNG Generic Reproducible Parallel Backend for
'foreach' Loops
doRedis 'Foreach' Parallel Adapter Using the 'Redis'
Database
doSNOW Foreach Parallel Adaptor for the 'snow' Package
dobin Dimension Reduction for Outlier Detection
dobson Data from the GLM Book by Dobson and Barnett
doc2concrete Measuring Concreteness in Natural Language
doc2vec Distributed Representations of Sentences,
Documents and Topics
dockViewR Layout Manager Widget for R and 'shiny' Apps
dockerfiler Easy Dockerfile Creation from R
docket Insert R Data into 'Word' Documents
docknitr Use Docker Images to Process Rmarkdown Blocks
doclisting List Functions in Documentation
doconv Document Conversion to 'PDF', Thumbnails and
Visual Testing
docopt Command-Line Interface Specification Language
docopulae Optimal Designs for Copula Models
docorator Docorate (Decorate + Output) Displays
docore Utility Functions for Scientific Coding
docstring Provides Docstring Capabilities to R Functions
doctest Generate Tests from Examples Using 'roxygen'
and 'testthat'
document Run 'roxygen2' on (Chunks of) Single Code Files
documenter Documents Files
documentosbr Validate Brazilian Administrative Registers -
Valida Documentos
docxtractr Extract Data Tables and Comments from
'Microsoft' 'Word' Documents
dodgr Distances on Directed Graphs
doebioresearch Analysis of Design of Experiments for
Biological Research
dogesr Work with the Doges/Dogaresse Dataset
dominanceanalysis Dominance Analysis
domino R Console Bindings for the 'Domino Command-Line
Client'
domir Dominance Analysis Methods
donut Nearest Neighbour Search with Variables on a
Torus
donutsk Construct Advanced Donut Charts
doofa Designs for Order-of-Addition Experiments
doolkit Exploration of Dental Surface Topography
door Analysis of Clinical Trials with the
Desirability of Outcome Ranking Methodology
dormancy Detection and Analysis of Dormant Patterns in
Data
doseSens Conduct Sensitivity Analysis with Continuous
Exposures and Binary or Continuous Outcomes
dosearch Causal Effect Identification from Multiple
Incomplete Data Sources
dosedesignR Interactive Designing of Dose Finding Studies
dosresmeta Multivariate Dose-Response Meta-Analysis
dostats Compute Statistics Helper Functions
dotCall64 Enhanced Foreign Function Interface Supporting
Long Vectors
dotenv Load Environment Variables from '.env'
dotgen Gene-Set Analysis via Decorrelation by
Orthogonal Transformation
dotprofile Create and Manage Configuration Profiles
dots Dot Density Maps
dotsViolin Dot Plots Mimicking Violin Plots
dotty The Unpacking Dot Operator
dotwhisker Dot-and-Whisker Plots of Regression Results
doubcens Survivor Function Estimation for Doubly
Interval-Censored Failure Time Data
double.truncation Analysis of Doubly-Truncated Data
doubt Enable Operators Containing the '?' Symbol
douconca Double Constrained Correspondence Analysis for
Trait-Environment Analysis in Ecology
doudpackage Create Elegant Table 1 in HTML for
Bio-Statistics
downlit Syntax Highlighting and Automatic Linking
downloader Download Files over HTTP and HTTPS
downloadthis Implement Download Buttons in 'rmarkdown'
downscale Downscaling Species Occupancy
downsize A Tool to Downsize Large Analysis Projects for
Testing
dowser B Cell Receptor Phylogenetics Toolkit
dpGMM Dynamic Programming Based Gaussian Mixture
Modelling Tool for 1D and 2D Data
dparser Port of 'Dparser' Package
dpasurv Dynamic Path Analysis of Survival Data via
Aalen's Additive Hazards Model
dpcR Digital PCR Analysis
dpcc Dynamic Programming for Convex Clustering
dpcid Differential Partial Correlation IDentification
dpdr Interface to Health Canada Drug Product
Database API
dpkg Create, Stow, and Read Data Packages
dplR Dendrochronology Program Library in R
dplyr A Grammar of Data Manipulation
dplyrAssist RStudio Addin for Teaching and Learning Data
Manipulation Using 'dplyr'
dpm Dynamic Panel Models Fit with Maximum
Likelihood
dppca Differentially Private Principal Component
Analysis Visualization
dppmix Determinantal Point Process Mixture Models
dprop Computation of Some Important Distributional
Properties
dpseg Piecewise Linear Segmentation by Dynamic
Programming
dqcheckr Automated Data Quality Checks for Recurring
Dataset Deliveries
dqrng Fast Pseudo Random Number Generators
dr Methods for Dimension Reduction for Regression
dr4pl Dose Response Data Analysis using the 4
Parameter Logistic (4pl) Model
drMAIC Doubly Robust Matching-Adjusted Indirect
Comparison for HTA
dracor Decode Draco Format 3D Mesh Data
dragonking Statistical Tools to Identify Dragon Kings
dragracer Data Sets for RuPaul's Drag Race
dragulaR Drag and Drop Elements in 'Shiny' using
'Dragula Javascript Library'
drake A Pipeline Toolkit for Reproducible Computation
at Scale
drape Doubly Robust Average Partial Effects
drat 'Drat' R Archive Template
drawer An Interactive HTML Image Editing Tool
drawsample Draw Samples with the Desired Properties from a
Data Set
drc Analysis of Dose-Response Curves
drcSeedGerm Utilities for Data Analyses in Seed
Germination/Emergence Assays
drcarlate Improving Estimation Efficiency in CAR with
Imperfect Compliance
drclust Simultaneous Clustering and (or) Dimensionality
Reduction
drcte Statistical Approaches for Time-to-Event Data
in Agriculture
drda Dose-Response Data Analysis
dream Dynamic Relational Event Analysis and Modeling
dreamer Dose Response Models for Bayesian Model
Averaging
dreamerr Error Handling Made Easy
drf Distributional Random Forests
drgee Doubly Robust Generalized Estimating Equations
drglm Fitting Linear and Generalized Linear Models in
"Divide and Recombine" Approach to Large Data
Sets
drhur Learning R with Dr. Hu
drhutools Political Science Academic Research Gears
drifter Concept Drift and Concept Shift Detection for
Predictive Models
drimmR Estimation, Simulation and Reliability of
Drifting Markov Models
driveR Prioritizing Cancer Driver Genes Using Genomics
Data
drmeta Design-Robust Meta-Analysis via
Variance-Function Models
drogonR High-Performance HTTP Server for R via 'Drogon'
droll Analyze Roll Distributions
drone Data for Data Visualisation Geometries
Encyclopedia
dropR Dropout Analysis by Condition
dropout Handling Incomplete Responses in Survey Data
Analysis
droptest Simulates LOX Drop Testing
drord Doubly-Robust Estimators for Ordinal Outcomes
drought Statistical Modeling and Assessment of Drought
drpop Efficient and Doubly Robust Population Size
Estimation
drrglm Doubly Regularized Matrix-Variate Regression
drtmle Doubly-Robust Nonparametric Estimation and
Inference
drugDemand Drug Demand Forecasting
drugdevelopR Utility-Based Optimal Phase II/III Drug
Development Planning
drugsens Automated Analysis of 'QuPath' Output Data and
Metadata Extraction
drumr Turn R into a Drum Machine
ds Descriptive Statistics
ds4psy Data Science for Psychologists
dsBase 'DataSHIELD' Server Side Base Functions
dsBaseClient 'DataSHIELD' Client Side Base Functions
dsROCrate 'DataSHIELD' RO-Crate Governance Functions
dsTidyverse 'DataSHIELD' 'Tidyverse' Server-Side Package
dsTidyverseClient 'DataSHIELD' 'Tidyverse' Clientside Package
dsa Seasonal Adjustment of Daily Time Series
dsample Discretization-Based Direct Random Sample
Generation
dsb Normalize & Denoise Droplet Single Cell Protein
Data (CITE-Seq)
dscore D-Score for Child Development
dscoreMSM Survival Proximity Score Matching in
Multi-State Survival Model
dsem Dynamic Structural Equation Models
dsge Dynamic Stochastic General Equilibrium Models
dsims Distance Sampling Simulations
dslabs Data Science Labs
dslice Dynamic Slicing
dsm Density Surface Modelling of Distance Sampling
Data
dsmmR Estimation and Simulation of Drifting
Semi-Markov Models
dsos Dataset Shift with Outlier Scores
dsp Dynamic Shrinkage Process and Change Point
Detection
dspline Tools for Computations with Discrete Splines
dsrTest Tests and Confidence Intervals on Directly
Standardized Rates for Several Methods
dssd Distance Sampling Survey Design
dst Using the Theory of Belief Functions
dstabledist The Discrete Stable Distribution Functions
dstat Conditional Sensitivity Analysis for Matched
Observational Studies
dstat2x2xk Demonstrated Insensitivity to Bias in 2x2xK
Contingency Tables
dtComb Statistical Combination of Diagnostic Tests
dtGAP Supervised Generalized Association Plots Based
on Decision Trees
dtangle Cell Type Deconvolution from Gene Expressions
dtaudit Audit and Diagnostic Tools for 'data.table'
Workflows
dtgiw Discrete Transmuted Generalized Inverse Weibull
Distribution
dti Analysis of Diffusion Weighted Imaging (DWI)
Data
dtlg A Performance-Focused Package for Clinical
Trial Tables
dtlscores Scrape Deutsche Turnliga Archive
dtmapi Fetching Data from the 'Displacement Tracking
Matrix'
dtms Discrete-Time Multistate Models
dtp Dynamic Panel Threshold Model
dtpcrm Dose Transition Pathways for Continual
Reassessment Method
dtplyr Data Table Back-End for 'dplyr'
dtrSurv Dynamic Treatment Regimes for Survival Analysis
dtrackr Track your Data Pipelines
dtreg Interact with Data Type Registries and Create
Machine-Readable Data
dtsmartr Interactive Virtualized Data Explorer Grid
Widget
dtt Discrete Trigonometric Transforms
dttr2 Manipulate Date, POSIXct and hms Vectors
dtts 'data.table' Time-Series
dtw Dynamic Time Warping Algorithms
dtwclust Time Series Clustering Along with Optimizations
for the Dynamic Time Warping Distance
dual Automatic Differentiation with Dual Numbers
dualScale Dual Scaling Analysis of Data
dualtrees Decimated and Undecimated 2D Complex Dual-Tree
Wavelet Transform
duawranglr Securely Wrangle Dataset According to Data
Usage Agreement
dub Unpacking Assignment for Lists via Pattern
Matching
duckdb DBI Package for the DuckDB Database Management
System
duckdbfs High Performance Remote File System, Database
and 'Geospatial' Access Using 'duckdb'
duckduckr Simple Client for the DuckDuckGo Instant Answer
API
duckh3 H3 Extension of 'DuckDB'
duckplyr A 'DuckDB'-Backed Version of 'dplyr'
duckspatial R Interface to 'DuckDB' Database with Spatial
Extension
duet Analysing Non-Verbal Communication in Dyadic
Interactions from Video Data
dumbbell Displaying Changes Between Two Points Using
Dumbbell Plots
dummy Automatic Creation of Dummies with Support for
Predictive Modeling
dundermifflin The Office Quotes on-Demand
dunlin Preprocessing Tools for Clinical Trial Data
dunn.test Dunn's Test of Multiple Comparisons Using Rank
Sums
dupNodes Computes DNSLbetweenness, a Betweenness Measure
that Includes Self-Loops
dupiR Bayesian Inference from Count Data using
Discrete Uniform Priors
dupree Identify Duplicated R Code in a Project
dverse Document a Universe of Packages
dvir Disaster Victim Identification
dwctaxon Edit and Validate Darwin Core Taxon Data
dwdradar Read Binary Radar Files from 'DWD' (German
Weather Service)
dwlm Doubly Weighted Linear Model
dwp Density-Weighted Proportion
dySEM Dyadic Structural Equation Modeling
dyadicMarkov Pattern Identification for Dyadic Sequences
Using Transition Matrices
dyads Dyadic Network Analysis
dycdtools Calibration Assistant and Post-Processing Tool
for Aquatic Ecosystem Model DYRESM-CAEDYM
dydea Detection of Chaotic and Regular Intervals in
the Data
dygraphs Interface to 'Dygraphs' Interactive Time Series
Charting Library
dymo Dynamic Mode Decomposition Forecasting with
Conformal Predictive Sampling
dyn Time Series Regression
dynBiplotGUI Full Interactive GUI for Dynamic Biplot in R
dynConfiR Dynamic Models for Confidence and Response Time
Distributions
dynCorr Dynamic Correlation Package
dynRB Dynamic Range Boxes
dynaSpec Dynamic Spectrogram Visualizations
dynaTree Dynamic Trees for Learning and Design
dynafluxr Retrieve Reaction Rate Dynamics from Metabolite
Concentration Time Courses
dynamac Dynamic Simulation and Testing for
Single-Equation ARDL Models
dynamicSDM Species Distribution and Abundance Modelling at
High Spatio-Temporal Resolution
dynamicTreeCut Methods for Detection of Clusters in
Hierarchical Clustering Dendrograms
dynamicpv Evaluates Present Values and Health Economic
Models with Dynamic Pricing and Uptake
dynamite Bayesian Modeling and Causal Inference for
Multivariate Longitudinal Data
dynasim Dynamics Similarity Coefficient
dynatop An Implementation of Dynamic TOPMODEL
Hydrological Model in R
dynatopGIS Algorithms for Helping Build Dynamic TOPMODEL
Implementations from Spatial Data
dyndimred Dimensionality Reduction Methods in a Common
Format
dynemu Emulation of Dynamic Simulators via
One-Step-Ahead Approach
dynetNLAResistance Resisting Neighbor Label Attack in a Dynamic
Network
dyngen A Multi-Modal Simulator for Spearheading
Single-Cell Omics Analyses
dynlm Dynamic Linear Regression
dynmix Estimation of Dynamic Finite Mixtures
dynpanel Dynamic Panel Data Models
dynparam Creating Meta-Information for Parameters
dynr Dynamic Models with Regime-Switching
dynsbm Dynamic Stochastic Block Models
dynsim Dynamic Simulations of Autoregressive
Relationships
dynsurv Dynamic Models for Survival Data
dyntaper Dynamic Stem Profile Models, AKA Tree Taper
Equations
dynutils Common Functionality for the 'dynverse'
Packages
dynwrap Representing and Inferring Single-Cell
Trajectories
e1071 Misc Functions of the Department of Statistics,
Probability Theory Group (Formerly: E1071), TU
Wien
e2tree Explainable Ensemble Trees
eAnalytics Dynamic Web-Based Analytics for the Energy
Industry
eBsc "Empirical Bayes Smoothing Splines with
Correlated Errors"
eCAR Eigenvalue CAR Models
eCV Enhanced Coefficient of Variation and IDR
Extensions for Reproducibility Assessment
eCerto Statistical Tests for the Production of
Reference Materials
eChem Simulations for Electrochemistry Experiments
eClosure Methods Based on the e-Closure Principle
eDITH Model Transport of Environmental DNA in River
Networks
eDMA Dynamic Model Averaging with Grid Search
eDNAfuns Working with Metabarcoding Data in a Tidy
Format
eDNAjoint Joint Modeling of Traditional and Environmental
DNA Survey Data in a Bayesian Framework
eFCM Exponential Factor Copula Model
eFRED Fetch Data from the Federal Reserve Economic
Database
eGST Leveraging eQTLs to Identify Individual-Level
Tissue of Interest for a Complex Trait
eHDPrep Quality Control and Semantic Enrichment of
Datasets
eLNNpairedCov Model-Based Gene Selection for Paired Data
eList List Comprehension and Tools
eNchange Ensemble Methods for Multiple Change-Point
Detection
ePCR Ensemble Penalized Cox Regression for Survival
Prediction
eRTG3D Empirically Informed Random Trajectory
Generation in 3-D
eRm Extended Rasch Modeling
eSDM Ensemble Tool for Predictions from Species
Distribution Models
eSIR Extended State-Space SIR Models
eVCGsampler VCG Sampling using Energy-Based Covariate
Balancing
eadrm Fitting Dose-Response Models Using an
Evolutionary Algorithm
eaf Plots of the Empirical Attainment Function
eam Evidence Accumulation Models
earlyR Estimation of Transmissibility in the Early
Stages of a Disease Outbreak
earlygating Properties of Bayesian Early Gating Designs
earth Multivariate Adaptive Regression Splines
earthUI Interactive 'shiny' GUI for the 'earth' Package
earthdatalogin NASA 'EarthData' Access Utilities
earthtide Parallel Implementation of 'ETERNA 3.40' for
Prediction and Analysis of Earth Tides
earthtones Derive a Color Palette from a Particular
Location on Earth
easy.glmnet Functions to Simplify the Use of 'glmnet' for
Machine Learning
easy.utils Frequently Used Functions for Easy R
Programming
easyAHP Analytic Hierarchy Process (AHP)
easyCODA Compositional Data Analysis in Practice
easyComment Generate Comment Boxes with Custom Alignment
easyDes An Easy Way to Descriptive Analysis
easyEWAS Perform and Visualize EWAS Analysis
easyLSEA Lipid Set Enrichment Analysis with Dual KS and
'fgsea' Engines
easyNCDF Tools to Easily Read/Write NetCDF Files
into/from Multidimensional R Arrays
easyORtables Easy Odds Ratio Tables
easyPSID Reading, Formatting, and Organizing the Panel
Study of Income Dynamics (PSID)
easyPubMed Search and Retrieve Scientific Publication
Records from PubMed
easyRasch2 Psychometric Analysis with Rasch Measurement
Theory
easyRaschBayes Bayesian Rasch Analysis Using 'brms'
easyRef Easy Reference Generation for R Packages
easySVG An Easy SVG Basic Elements Generator
easyScieloPack Easy Interface to Search 'SciELO' Database
easySdcTable Easy Interface to the Statistical Disclosure
Control Package 'sdcTable' Extended with Own
Implementation of 'GaussSuppression'
easyVerification Ensemble Forecast Verification for Large Data
Sets
easyViz Easy Visualization of Conditional Effects from
Regression Models
easyalluvial Generate Alluvial Plots with a Single Line of
Code
easyanova Analysis of Variance and Other Important
Complementary Analyses
easybgm Extracting and Visualizing Bayesian Graphical
Models
easybio Comprehensive Single-Cell Annotation and
Transcriptomic Analysis Toolkit
easycensus Quickly Find, Extract, and Marginalize U.S.
Census Tables
easyclimate Easy Access to High-Resolution Daily Climate
Data for Europe
easydb Easily Connect to Common Types of Databases
easylabel Interactive Scatter Plot and Volcano Plot
Labels
easynem Nematode Community Analysis
easynls Easy Nonlinear Model
easypackages Easy Loading and Installing of Packages
easypower Sample Size Estimation for Experimental Designs
easyr Helpful Functions from Oliver Wyman Actuarial
Consulting
easyreg Easy Regression
easystats Framework for Easy Statistical Modeling,
Visualization, and Reporting
easysurv Simplify Survival Data Analysis and Model
Fitting
easytable Create Multi-Format Regression Tables
eat Efficiency Analysis Trees
eatATA Create Constraints for Small Test Assembly
Problems
eatDB Spreadsheet Interface for Relational Databases
eatGADS Data Management of Large Hierarchical Data
eatRep Educational Assessment Tools for Replication
Methods
eatTools Miscellaneous Functions for the Analysis of
Educational Assessments
ebGenotyping Genotyping and SNP Detection using Next
Generation Sequencing Data
ebTobit Empirical Bayesian Tobit Matrix Estimation
eba Elimination-by-Aspects Models
ebal Entropy Reweighting to Create Balanced Samples
ebci Robust Empirical Bayes Confidence Intervals
ebdbNet Empirical Bayes Estimation of Dynamic Bayesian
Networks
ebdm Estimating Bivariate Dependency from Marginal
Data
ebirdst Access and Analyze eBird Status and Trends Data
Products
ebm Explainable Boosting Machines
ebmc Ensemble-Based Methods for Class Imbalance
Problem
ebmstate Empirical Bayes Multi-State Cox Model
ebnm Solve the Empirical Bayes Normal Means Problem
ebrahim.gof Ebrahim-Farrington Goodness-of-Fit Test for
Logistic Regression
ebvcube Working with netCDF for Essential Biodiversity
Variables
ebx 'Earth Blox' API Client
ec50estimator An Automated Way to Estimate EC50 for
Stratified Datasets
ecan Ecological Analysis and Visualization
ecb Programmatic Access to the European Central
Bank's Data Portal
ecce Translate English Sentence into Chinese, or
Translate Chinese Sentence into English
ecdfHT Empirical CDF for Heavy Tailed Data
ecespa Functions for Spatial Point Pattern Analysis
echarts4r Create Interactive Graphs with 'Echarts
JavaScript' Version 6
echarty Minimal R/Shiny Interface to JavaScript Library
'ECharts'
echelon The Echelon Analysis and the Detection of
Spatial Clusters using Echelon Scan Method
echo Echo Code Evaluations
echo.find Finding Rhythms Using Extended Circadian
Harmonic Oscillators (ECHO)
echogram Echogram Visualisation and Analysis
echoice2 Choice Models with Economic Foundation
echor Access EPA 'ECHO' Data
echos Echo State Networks for Time Series Modeling
and Forecasting
ecic Extended Changes-in-Changes
ecipex Efficient Calculation of Fine Structure Isotope
Patterns via Fourier Transforms of
Simplex-Based Elemental Models
eclipseplot Graphical Visualizations for ROBUST-RCT Risk of
Bias Assessments
ecm Build Error Correction Models
ecmwfr Interface to 'ECMWF' and 'CDS' Data Web
Services
eco Ecological Inference in 2x2 Tables
ecoCopula Graphical Modelling and Ordination using
Copulas
ecoTolerance Ecological Tolerance Indices
ecoXCorr Lagged Cross-Correlation Analysis of
Environmental Time Series
ecocbo Calculating Optimum Sampling Effort in
Community Ecology
ecochange Integrating Ecosystem Remote Sensing Products
to Derive EBV Indicators
ecocomDP Tools to Create, Use, and Convert ecocomDP Data
ecode Ordinary Differential Equation Systems in
Ecology
ecodist Dissimilarity-Based Functions for Ecological
Analysis
ecodive Parallel and Memory-Efficient Ecological
Diversity Metrics
ecolMod "A Practical Guide to Ecological Modelling -
Using R as a Simulation Platform"
ecolRxC Ecological Inference of RxC Tables by Latent
Structure Approaches
ecolTest Community Ecology Tests
ecolottery Coalescent-Based Simulation of Ecological
Communities
econdatasets Easily Download 'EconDataverse' Datasets
econdataverse Easily Load and Install the 'EconDataverse'
econet Estimation of Parameter-Dependent Network
Centrality Measures
econid Economic Entity Identifier Standardization
economiccomplexity Computational Methods for Economic Complexity
econtools Enrich and Analyze Sovereign-Level Economic
Data
econullnetr Null Model Analysis for Ecological Networks
ecopower Power Estimates and Equivalence Testing for
Multivariate Data
ecoreg Ecological Regression using Aggregate and
Individual Data
ecoregime Analysis of Ecological Dynamic Regimes
ecorest Conducts Analyses Informing Ecosystem
Restoration Decisions
ecorisk Risk Assessments for Ecosystems or Ecosystem
Components
ecos Economic Statistics System of the Bank of Korea
ecosim Toolbox for Aquatic Ecosystem Modeling
ecospace Simulating Community Assembly and Ecological
Diversification Using Ecospace Frameworks
ecospat Spatial Ecology Miscellaneous Methods
ecostate State-Space Mass-Balance Model for Marine
Ecosystems
ecostats Code and Data Accompanying the Eco-Stats Text
(Warton 2022)
ecostatscale Statistical Scaling Functions for Ecological
Systems
ecoteach Educational Datasets for Ecology and
Agriculture
ecotourism Collection of Data on Wildlife Sightings,
Tourism Counts, and Weather from Australia
ecotox Analysis of Ecotoxicology
ecotoxicology Methods for Ecotoxicology
ecotraj Ecological Trajectory Analysis
ecotrends Temporal Trends in Ecological Niche Models
ecoval Procedures for Ecological Assessment of Surface
Waters
ecp Non-Parametric Multiple Change-Point Analysis
of Multivariate Data
ecpdist Extended Chen-Poisson Lifetime Distribution
ecr Evolutionary Computation in R
ectotemp Quantitative Estimates of Small Ectotherm
Temperature Regulation Effectiveness
ed50 Estimate ED50 and Its Confidence Interval
ed50simulation Estimate ED50 and Its Confidence Interval
eda4treeR Experimental Design and Analysis for Tree
Improvement
edar Convenient Functions for Exploratory Data
Analysis
edcpR Ecological Data Collection and Processing
Package
eddington Compute a Cyclist's Eddington Number
edeaR Exploratory and Descriptive Event-Based Data
Analysis
edecob Event Detection Using Confidence Bounds
edf Read Data from European Data Format (EDF and
EDF+) Files
edfReader Reading EDF(+) and BDF(+) Files
edfinr Access Tidy Education Finance Data
edgar Tool for the U.S. SEC EDGAR Retrieval and
Parsing of Corporate Filings
edgarWebR SEC Filings Access
edgarfundamentals Retrieve Fundamental Financial Data from SEC
'EDGAR'
edgeCorr Spatial Edge Correction
edgeR Empirical Analysis of Digital Gene Expression
Data in R
edgebundle Algorithms for Bundling Edges in Networks and
Visualizing Flow and Metro Maps
edgebundleR Circle Plot with Bundled Edges
edgedata Datasets that Support the EDGE Server DIY Logic
edgemodelr Local Large Language Model Inference Engine
edibble Encapsulating Elements of Experimental Design
ediblecity Modeling Urban Agriculture at City Scale
edina Bayesian Estimation of an Exploratory
Deterministic Input, Noisy and Gate Model
editData 'RStudio' Addin for Editing a 'data.frame'
editbl 'DT' Extension for CRUD (Create, Read, Update,
Delete) Applications in 'shiny'
editrules Parsing, Applying, and Manipulating Data
Cleaning Rules
edl Toolbox for Error-Driven Learning Simulations
with Two-Layer Networks
edlibR R Integration for Edlib, the C/C++ Library for
Exact Pairwise Sequence Alignment using Edit
(Levenshtein) Distance
edmdata Data Sets for Psychometric Modeling
edstan Stan Models for Item Response Theory
educabR Download and Process Brazilian Education Data
from INEP
educationR A Comprehensive Collection of Educational
Datasets
educationdata Retrieve Records from the Urban Institute's
Education Data Portal API
educineq Compute and Decompose Inequality in Education
edwards97 Langmuir Semi-Empirical Coagulation Model
eefAnalytics Robust Analytical Methods for Evaluating
Educational Interventions using Randomised
Controlled Trials Designs
eegkit Toolkit for Electroencephalography Data
eegkitdata Electroencephalography Toolkit Datasets
eemR Tools for Pre-Processing
Emission-Excitation-Matrix (EEM) Fluorescence
Data
eemdARIMA EEMD Based Auto Regressive Integrated Moving
Average Model
eemdTDNN EEMD and Its Variant Based Time Delay Neural
Network Model
eeptools Convenience Functions for Education Data
ef Modelling Framework for the Estimation of
Salmonid Abundance
efdm Simulate Forest Resources with the European
Forestry Dynamics Model
eff2 Efficient Least Squares for Total Causal
Effects
effClust Calculate Effective Number of Clusters for a
Linear Model
effectcheck Statistical Consistency Checker for Published
Research Results
effectplots Effect Plots
effects Effect Displays for Linear, Generalized Linear,
and Other Models
effectsize Indices of Effect Size
effectsizescr Indices for Single-Case Research
effsize Efficient Effect Size Computation
ega Error Grid Analysis
egg Extensions for 'ggplot2': Custom Geom, Custom
Themes, Plot Alignment, Labelled Panels,
Symmetric Scales, and Fixed Panel Size
eglhmm Extended Generalised Linear Hidden Markov
Models
egnyte Read and Write Files from 'Egnyte'
egor Import and Analyse Ego-Centered Network Data
eha Event History Analysis
ehaGoF Calculates Goodness of Fit Statistics
ehelp Enhanced Help to Enable "Docstring"-Comments in
Users Functions
ehymet Methodologies for Functional Data Based on the
Epigraph and Hypograph Indices
ei Ecological Inference
ei.Datasets Real Datasets for Assessing Ecological
Inference Algorithms
eiCircles Ecological Inference of RxC Tables by
Overdispersed-Multinomial Models
eiExpand Utilities for Expanding Functionality of
'eiCompare'
eiIT Ecological Inference via Information Theory
eiPack Ecological Inference and Higher-Dimension Data
Management
eia API Wrapper for U.S. Energy Information
Administration ('EIA') Open Data
eicm Explicit Interaction Community Models
eigenmodel Semiparametric Factor and Regression Models for
Symmetric Relational Data
eikosograms Visualizing Probabilities, Frequencies, and
Conditional Independence for Categorical
Variates
eimpute Efficiently Impute Large Scale Incomplete
Matrix
einops Flexible, Powerful, and Readable Tensor
Operations
einsum Einstein Summation
eiopaR Access to RFR (Risk-Free Rate) Curves Produced
by the EIOPA
eiopt2 Ecological Inference for RxC Tables via
Nonlinear Quadratic Optimization
eirm Explanatory Item Response Modeling for
Dichotomous and Polytomous Items
eive An Algorithm for Reducing Errors-in-Variable
Bias in Simple and Multiple Linear Regressions
eixport Export Emissions to Atmospheric Models
eks Tidy and Geospatial Kernel Smoothing
elaborator A 'shiny' Application for Exploring Laboratory
Data
elasdics Elastic Analysis of Sparse, Dense and Irregular
Curves
elasso Enhanced Least Absolute Shrinkage and Selection
Operator Regression Model
elastes Elastic Full Procrustes Means for Sparse and
Irregular Planar Curves
elastic Database Interface to 'Elasticsearch' and
'OpenSearch'
elasticnet Elastic-Net for Sparse Estimation and Sparse
PCA
elcf4R Electricity Load Curves Forecasting at
Individual Level
elect Estimation of Life Expectancies Using
Multi-State Models
elections USA Presidential Elections Data
electionsBR R Functions to Download and Clean Brazilian
Electoral Data
electivity Algorithms for Electivity Indices
electoral Allocating Seats Methods and Party System
Scores
elevatr Access Elevation Data from Various APIs
elexr Load Associated Press Election Results with
Elex
elfDistr Kumaraswamy Complementary Weibull Geometric
(Kw-CWG) Probability Distribution
elfgen Ecological Limit Function Model Generation and
Analysis Toolkit
elgbd Empirical Likelihood for General Block Designs
elhmc Sampling from a Empirical Likelihood Bayesian
Posterior of Parameters Using Hamiltonian Monte
Carlo
elisr Exploratory Likert Scaling
elitism Equipment for Logarithmic and Linear Time
Stepwise Multiple Hypothesis Testing
elixir Transmutation of Languages
elliplot Ellipse Summary Plot of Quantiles
ellipse Functions for Drawing Ellipses and Ellipse-Like
Confidence Regions
ellipsis Tools for Working with ...
elliptic Weierstrass and Jacobi Elliptic Functions
ellipticalsymmetry Elliptical Symmetry Tests
ellmer Chat with Large Language Models
elmNNRcpp The Extreme Learning Machine Algorithm
elo Ranking Teams by Elo Rating and Comparable
Methods
elrm Exact Logistic Regression via MCMC
elsa Entropy-Based Local Indicator of Spatial
Association
eltr Utilise Catastrophe Model Event Loss Table
Outputs
emBALVI EM Bayesian Adaptive LASSO Variational
Inference Based GWAS
emBayes Robust Bayesian Variable Selection via
Expectation-Maximization
emIRT EM Algorithms for Estimating Item Response
Theory Models
emailjsr 'emailjs' Support
emailvalidation Client for the 'emailalvalidation.io' E-Mail
Validation API
emayili Send Email Messages
embed Extra Recipes for Encoding Predictors
embryogrowth Tools to Analyze the Thermal Reaction Norm of
Embryo Growth
emburden Energy Burden Analysis Using Net Energy Return
Methodology
emcAdr Evolutionary Version of the Metropolis-Hastings
Algorithm
emdbook Support Functions and Data for "Ecological
Models and Data"
emdi Estimating and Mapping Disaggregated Indicators
emdist Earth Mover's Distance
ememax Estimation for Binary Emax Models with Missing
Responses and Bias Reduction
emery Accuracy Statistic Estimation for Imperfect
Gold Standards
emf Ecosystem Multifunctionality: Richness,
Divergence, and Regularity
emg Exponentially Modified Gaussian (EMG)
Distribution
emhawkes Exponential Multivariate Hawkes Model
emld Ecological Metadata as Linked Data
emln Organize, Handle, and Explore Ecological
Multilayer Networks
emmeans Estimated Marginal Means, aka Least-Squares
Means
emoa Evolutionary Multiobjective Optimization
Algorithms
emodnet.wfs Access 'EMODnet' Web Feature Service Data
emoji Data and Function to Work with Emojis
emojifont Emoji and Font Awesome in Graphics
emon Tools for Environmental and Ecological Survey
Design
emov Eye Movement Analysis Package for Fixation and
Saccade Detection
emphatic Exploratory Analysis of Tabular Data using
Colour Highlighting
empichar Evaluates the Empirical Characteristic Function
for Multivariate Samples
emplik Empirical Likelihood Ratio for
Censored/Truncated Data
emplik2 Empirical Likelihood Ratio Test for Two-Sample
U-Statistics with Censored Data
emplikAUC Empirical Likelihood Ratio Test/Confidence
Interval for AUC or pAUC
emplikCS Empirical Likelihood with Current Status Data
for Mean, Probability, Hazard
emreliability Test Reliability and CSEM in Educational
Measurement
ems Epimed Solutions Collection for Data Editing,
Analysis, and Benchmark of Health Units
emstreeR Tools for Fast Computing and Visualizing
Euclidean Minimum Spanning Trees
emuR Main Package of the EMU Speech Database
Management System
emulator Bayesian Emulation of Computer Programs
enaho Encuesta Nacional de Hogares (Peruvian Home
National Survey)
encharter Enhanced Office Open XML Charting for
'openxlsx2'
encode Represent Ordered Lists and Pairs as Strings
encryptedRmd Encrypt Html Reports Using 'Libsodium'
encryptr Easily Encrypt and Decrypt Data Frame/Tibble
Columns or Files using RSA Public/Private Keys
enderecobr Padronizador de Endereços Brasileiros
(Brazilian Addresses Standardizer)
endogeneity Recursive Two-Stage Models to Address
Endogeneity
endorse Bayesian Measurement Models for Analyzing
Endorsement Experiments
endtoend Transmissions and Receptions in an End to End
Network
energy E-Statistics: Multivariate Inference via the
Energy of Data
energyGOF Goodness-of-Fit Tests for Univariate Data via
Energy
energymethod Two-Sample Test of many Functional Means using
the Energy Method
energyr Data Published by the United States Federal
Energy Regulatory Commission
enerscape Compute Energy Landscapes
enetLTS Robust and Sparse Methods for High Dimensional
Linear and Binary and Multinomial Regression
english Translate Integers into English
engression Engression Modelling
enhancer Mixed-Effects Models Enhancing Functions
enmSdmX Species Distribution Modeling and Ecological
Niche Modeling
enmpa Ecological Niche Modeling using
Presence-Absence Data
enpls Ensemble Partial Least Squares Regression
enrichR Provides an R Interface to 'Enrichr'
enrichit 'C++' Implementations of Functional Enrichment
Analysis
enrichplot Visualization of Functional Enrichment Result
enrichwith Methods to Enrich R Objects with Extra
Components
ensModelVis Visualisations for Model Ensembles
ensembleBMA Probabilistic Forecasting using Ensembles and
Bayesian Model Averaging
ensembleML Unified Interface for Ensemble Machine Learning
Methods
ensembleMOS Ensemble Model Output Statistics
ensembleTax Ensemble Taxonomic Assignments of Amplicon
Sequencing Data
ensemblepp Ensemble Postprocessing Data Sets
enshuman Human Gene Annotation Data from 'Ensembl'
ensr Elastic Net SearcheR
entropart Entropy Partitioning to Measure Diversity
entropy Estimation of Entropy, Mutual Information and
Related Quantities
entrymodels Estimate Entry Models
envDocument Document the R Working Environment
envalysis Miscellaneous Functions for Environmental
Analyses
enveomics.R Various Utilities for Microbial Genomics and
Metagenomics
envi Environmental Interpolation using Spatial
Kernel Density Estimation
enviGCMS GC/LC-MS Data Analysis for Environmental
Science
enviPat Isotope Pattern, Profile and Centroid
Calculation for Mass Spectrometry
envir Manage R Environments Better
envirem Generation of ENVIREM Variables
envnames Keep Track of User-Defined Environment Names
envoutliers Methods for Identification of Outliers in
Environmental Data
envsetup Support the Setup of the R Environment for
Clinical Trial Programming Workflows
envstat Configurable Reporting on your External Compute
Environment
envvar Make Working with Environment Variables Easier
and More Consistent
eoR Data Management Package (Exposure and
Occurrence Data in R)
eoa3 Wildlife Mortality Estimator for Low Fatality
Rates and Imperfect Detection
eodhdR2 Official R API for Fetching Data from 'EODHD'
eoffice Export or Graph and Tables to 'Microsoft'
Office and Import Figures and Tables
epade Easy Plots
epandist Statistical Functions for the Censored and
Uncensored Epanechnikov Distribution
epanet2toolkit Call 'EPANET' Functions to Simulate Pipe
Networks
epanetReader Read Epanet Files into R
epca Exploratory Principal Component Analysis
epe4md EPE's 4MD Model to Forecast the Adoption of
Distributed Generation
eph Argentina's Permanent Household Survey Data and
Manipulation Utilities
epiCo Statistical and Viz Tools for Vector-Borne
Diseases in Colombia
epiDeaths Functions for Calculating Mortality Indicators
epiDisplay Epidemiological Data Display Package
epiR Tools for the Analysis of Epidemiological Data
epibasix Elementary Epidemiological Functions for
Epidemiology and Biostatistics
epicR Evaluation Platform in Chronic Obstructive
Pulmonary Disease
epicasting Ewnet: An Ensemble Wavelet Neural Network for
Forecasting and Epicasting
epichains Simulating and Analysing Transmission Chain
Statistics Using Branching Process Models
epicmodel Causal Modeling in Epidemiology
epicontacts Handling, Visualisation and Analysis of
Epidemiological Contacts
epidata Tools to Retrieve Economic Policy Institute
Data Library Extracts
epidatr Client for Delphi's 'Epidata' API
epidict Epidemiology Data Dictionaries and Random Data
Generators
epidm UK Epidemiological Data Management
epifitter Analysis and Simulation of Plant Disease
Progress Curves
epiflows Predicting Disease Spread from Flow Data
epigraphdb Interface Package for the 'EpiGraphDB' Platform
epigrowthfit Nonlinear Mixed Effects Models of Epidemic
Growth
epikit Miscellaneous Helper Tools for Epidemiologists
epilogi The 'epilogi' Variable Selection Algorithm for
Continuous Data
epimdr Functions and Data for "Epidemics: Models and
Data in R"
epimdr2 Functions and Data for "Epidemics: Models and
Data in R (2nd Edition)"
epinet Epidemic/Network-Related Tools
epinetr Epistatic Network Modelling with Forward-Time
Simulation
epiomics Analysis of Omics Data in Observational Studies
epiparameter Classes and Helper Functions for Working with
Epidemiological Parameters
epiparameterDB Database of Epidemiological Parameters
epiphy Analysis of Plant Disease Epidemics
episensr Basic Sensitivity Analysis of Epidemiological
Results
episomer Early Detection of Public Health Threats from
Social Media Data
epitab Flexible Contingency Tables for Epidemiology
epitabulate Tables for Epidemiological Analysis
epitools Epidemiology Tools
epitraxr Manipulate 'EpiTrax' Data and Generate Reports
epitrix Small Helpers and Tricks for Epidemics Analysis
epiviz Data Visualisation Functions for
Epidemiological Data Science Products
epiworldR Fast Agent-Based Epi Models
epiworldRShiny A 'shiny' Wrapper of the R Package 'epiworldR'
epiworldRcalibrate Fast and Effortless Calibration of Agent-Based
Models using Machine Learning
epizootic Spatially Explicit Population Models of Disease
Transmission in Wildlife
eplusr A Toolkit for Using Whole Building Simulation
Program 'EnergyPlus'
eply Apply a Function Over Expressions
epm EcoPhyloMapper
epmfd Exploratory and Person/Item Misfit Diagnostics
for Polytomous Data
epmrob Robust Estimation of Probit Models with
Endogeneity
epo Enhanced Portfolio Optimization (EPO)
epocakir Clinical Coding of Patients with Kidney Disease
eponge Keep Your Environment Clean
epos Epilepsy Ontologies' Similarities
epoxy String Interpolation for Documents, Reports and
Apps
eppoFindeR Interface to the EPPO Database and Public APIs
epr Easy Polynomial Regression
epsiwal Exact Post Selection Inference with
Applications to the Lasso
epts Educational Platform Trials Simulator
epubr Read EPUB File Metadata and Text
epxToR Import 'Epidata' XML Files '.epx'
eq5d Methods for Analysing 'EQ-5D' Data and
Calculating 'EQ-5D' Index Scores
eq5dsuite Handling and Analysing EQ-5d Data
eqtesting Equivalence Testing Functions
equalCovs Testing the Equality of Two Covariance Matrices
equatags Equations to 'XML'
equate Observed-Score Linking and Equating
equateIRT IRT Equating Methods
equateMultiple Equating of Multiple Forms
equatiomatic Transform Models into 'LaTeX' Equations
equiBSPD Equivalent Estimation Balanced Split Plot
Designs
equil2 Calculate Urinary Saturation with the EQUIL2
Algorithm
equivUMP Uniformly Most Powerful Invariant Tests of
Equivalence
equivalence Provides Tests and Graphics for Assessing Tests
of Equivalence
equivalenceTest Equivalence Test for the Means of Two Normal
Distributions
era Year-Based Time Scales
erah Automated Spectral Deconvolution, Alignment,
and Metabolite Identification in GC/MS-Based
Untargeted Metabolomics
eratosthenes Archaeological Synchronism
erboost Nonparametric Multiple Expectile Regression via
ER-Boost
ercv Fitting Tails by the Empirical Residual
Coefficient of Variation
erer Empirical Research in Economics with R
ergMargins Process Analysis for Exponential Random Graph
Models
ergm Fit, Simulate and Diagnose Exponential-Family
Models for Networks
ergm.count Fit, Simulate and Diagnose Exponential-Family
Models for Networks with Count Edges
ergm.ego Fit, Simulate and Diagnose Exponential-Family
Random Graph Models to Egocentrically Sampled
Network Data
ergm.multi Fit, Simulate and Diagnose Exponential-Family
Models for Multiple or Multilayer Networks
ergm.rank Fit, Simulate and Diagnose Exponential-Family
Models for Rank-Order Relational Data
ergm.sign Exponential-Family Models for Signed Networks
ergmclust Exponential-Family Random Graph Models for
Network Clustering
ergmgp Tools for Modeling ERGM Generating Processes
ergmharris Local Health Department network data set
ergmito Exponential Random Graph Models for Small
Networks
erify Check Arguments and Generate Readable Error
Messages
ern Effective Reproduction Number Estimation
ernm Exponential-Family Random Network Models
errorist Automatically Search Errors or Warnings
errorlocate Locate Errors with Validation Rules
errors Uncertainty Propagation for R Vectors
errum Exploratory Reduced Reparameterized Unified
Model Estimation
ervissexplore Retrieve and Explore ERVISS Respiratory Virus
Surveillance Data
es.dif Compute Effect Sizes of the Difference
esDesign Adaptive Enrichment Designs with Sample Size
Re-Estimation
esaddle Extended Empirical Saddlepoint Density
Approximations
esaps Indicators of Electoral Systems and Party
Systems
esback Expected Shortfall Backtesting
esc Effect Size Computation for Meta Analysis
escalation A Modular Approach to Dose-Finding Clinical
Trials
esci Estimation Statistics with Confidence Intervals
eseis Environmental Seismology Toolbox
eselect Adaptive Clinical Trial Designs with Endpoint
Selection and Sample Size Reassessment
esem Exploratory Structural Equation Modeling ESEM
esemifar Smoothing Long-Memory Time Series
eshrink Shrinkage for Effect Estimation
esmisc Misc Functions of Eduard Szöcs
esmprep Data Preparation During and After the Use of
the Experience Sampling Methodology (ESM)
esmtools Preprocessing Experience Sampling Method (ESM)
Data
espadon Easy Study of Patient DICOM Data in Oncology
esquisse Explore and Visualize Your Data Interactively
esreg Joint Quantile and Expected Shortfall
Regression
ess Efficient Stepwise Selection in Decomposable
Models
essHist The Essential Histogram
essentialstools Datasets and Utilities for Essentials of
Statistics for the Behavioral Sciences
essurvey Download Data from the European Social Survey
on the Fly
estadistica Fundamentos de estadística descriptiva e
inferencial
estar Ecological Stability Metrics
estatapi R Interface to e-Stat API
estats Fast and Light-Weight Energy Statistics
estimability Tools for Assessing Estimability of Linear
Predictions
estimateW Estimation of Spatial Weight Matrices
estimators Parameter Estimation
estimatr Fast Estimators for Design-Based Inference
estimraw Estimation of Four-Fold Table Cell Frequencies
(Raw Data) from Effect Size Measures
estmeansd Estimating the Sample Mean and Standard
Deviation from Commonly Reported Quantiles in
Meta-Analysis
estprod Estimation of Production Functions
esviz Plotting Functions for Climate Science and
Services
et.nwfva Forest Yield Tables for Northwest Germany and
their Application
etable Easy Table
etasFLP Mixed FLP and ML Estimation of ETAS Space-Time
Point Processes for Earthquake Description
ethiodate Working with Ethiopian Dates
ethnobotanyR Ethnobotanical Analysis, Decision-Framing, and
TEK Modeling
etl Extract-Transform-Load Framework for Medium
Data
etm Empirical Transition Matrix
etrader 'ETRADE' API Interface for R
etree Classification and Regression with Structured
and Mixed-Type Data
etrm Energy Trading and Risk Management
etrunct Computes Moments of Univariate Truncated t
Distribution
etsi Efficient Testing Using Surrogate Information
etwfe Extended Two-Way Fixed Effects
eudract Creates Safety Results Summary in XML to Upload
to EudraCT, or ClinicalTrials.gov
eufmdis.adapt Analyse 'EuFMDiS' Output Files via a Shiny App
eulerr Area-Proportional Euler and Venn Diagrams with
Ellipses
eummd Efficient Univariate Maximum Mean Discrepancy
eunis.habitats EUNIS Habitat Classification
eurodata Fast and Easy Eurostat Data Import and Search
euroleaguer 'Euroleague basketball API'
europepmc R Interface to the Europe PubMed Central
RESTful Web Service
europop Historical Populations of European Cities,
1500-1800
eurostat Tools for Eurostat Open Data
eva Extreme Value Analysis with Goodness-of-Fit
Testing
eva3dm Evaluation of 3D Meteorological and Air Quality
Models
evabic Evaluation of Binary Classifiers
evacpath Least-Cost Pedestrian Evacuation Modeling
evalHTE Evaluating Heterogeneous Treatment Effects
evalITR Evaluating Individualized Treatment Rules
evalR Evaluation of Unverified Code
evaluate Parsing and Evaluation Tools that Provide More
Details than the Default
evapoRe Evapotranspiration R Recipes
evclass Evidential Distance-Based Classification
evd Functions for Extreme Value Distributions
evdbayes Bayesian Analysis in Extreme Value Theory
eve The Eigenvalues Entropy as a Classifier
Evaluation Measure
evenBreak A Posteriori Probs of Suits Breaking Evenly
Across Four Hands
eventInterval Sequential Event Interval Analysis
eventPred Event Prediction
eventTrack Event Prediction for Time-to-Event Endpoints
eventdataR Event Data Repository
eventglm Regression Models for Event History Outcomes
eventreport Diagnose, Visualize, and Aggregate Event Report
Level Data
eventstream Streaming Events and their Early Classification
eventstudyr Estimation and Visualization of Linear Panel
Event Studies
evesim Evolution Emulator: Species Diversification
under an Evolutionary Relatedness Dependent
Scenario
evgam Generalised Additive Extreme Value Models
evidenceFactors Reporting Tools for Sensitivity Analysis of
Evidence Factors in Observational Studies
evidenceratio Likelihood-Based Evidence Ratios for Classical
Statistical Tests
evident Evidence Factors in Observational Studies
evilDice Test Dice Sets for Intransitive Properties
evinf Inference with Extreme Value Inflated Count
Data
evir Extreme Values in R
evitaicossa Antiassociative Algebra
evmissing Extreme Value Analyses with Missing Data
evmix Extreme Value Mixture Modelling, Threshold
Estimation and Boundary Corrected Kernel
Density Estimation
evmr Extreme Value Modeling for r-Largest Order
Statistics
evoFE Evolutionary Feature Engineering
evoTS Analyses of Evolutionary Time-Series
evolMap Dynamic and Interactive Maps
evola Evolutionary Algorithm
evolqg Evolutionary Quantitative Genetics
evolution A Client for 'Evolution Cloud API'
evolvability Calculation of Evolvability Parameters
evolved Open Software for Teaching Evolutionary Biology
at Multiple Scales Through Virtual Inquiries
evoper Evolutionary Parameter Estimation for 'Repast
Simphony' Models
evprof Electric Vehicle Charging Sessions Profiling
and Modelling
evsim Electric Vehicle Charging Sessions Simulation
evt0 Mean of Order P, Peaks over Random Threshold
Hill and High Quantile Estimates
evtree Evolutionary Learning of Globally Optimal Trees
ewens Ewens Distribution
ewp An Empirical Model for Underdispersed Count
Data
exCon Interactive Exploration of Contour Data
exact.n Exact Samples Sizes and Inference for Clinical
Trials with Binary Endpoint
exact2x2 Exact Tests and Confidence Intervals for 2x2
Tables
exactLTRE An Exact Method for Life Table Response
Experiment (LTRE) Analysis
exactRankTests Exact Distributions for Rank and Permutation
Tests
exactamente Explore the Exact Bootstrap Method
exactci Exact P-Values and Matching Confidence
Intervals for Simple Discrete Parametric Cases
exactextractr Fast Extraction from Raster Datasets using
Polygons
exametrika Test Theory Analysis and Biclustering
examly Statistical Metrics and Reporting Tool
exampletestr Help for Writing Unit Tests Based on Function
Examples
exams Automatic Generation of Exams in R
exams.forge Support for Compiling Examination Tasks using
the 'exams' Package
exams.forge.data Sample and Precomputed Data for Use with
'exams.forge'
exams.mylearn Question Generation in the 'MyLearn' XML Format
exams2forms Embedding 'exams' Exercises as Forms in
'rmarkdown' or 'quarto' Documents
exams2ilias ILIAS Export Interface for R/Exams
exams2learnr Interface for 'exams' Exercises in 'learnr'
Tutorials
exams2sakai Automatic Generation of Exams in R for 'Sakai'
excel2eprime Split Sentences by Factors
excelR A Wrapper of the 'JavaScript' Library 'jExcel'
exceldata Streamline Data Import, Cleaning and Recoding
from 'Excel'
excerptr Excerpt Structuring Comments from Your Code
File and Set a Table of Contents
excessmort Excess Mortality
excluder Checks for Exclusion Criteria in Online Data
excursions Excursion Sets and Contour Credibility Regions
for Random Fields
exdex Estimation of the Extremal Index
exdqlm Extended Dynamic Quantile Linear Models
executablePackeR Make 'shiny' App to Executable Program
exeval External Evaluation of Population
Pharmacokinetic-Pharmacodynamic (popPKPD)
Models
exhaustiveRasch Item Selection and Exhaustive Search for Rasch
Models
exif Read EXIF Metadata from JPEGs
exifr EXIF Image Data in R
exiftoolr ExifTool Functionality from R
expDB Database for Experiment Dataset
expSBM An Exponential Stochastic Block Model for
Interaction Lengths
expectreg Expectile and Quantile Regression
experDesign Design Experiments for Batches
experiences Experience Research
experiment R Package for Designing and Analyzing
Randomized Experiments
experimentr Datasets Used in Social Science Experiments: A
Hands-on Introduction
expertsurv Incorporate Expert Opinion with Parametric
Survival Models
expint Exponential Integral and Incomplete Gamma
Function
expirest Expiry Estimation Procedures
explainer Machine Learning Model Explainer
explodemap Hierarchical Exploded-View Cartography
explor Interactive Interfaces for Results Exploration
exploratory A Tool for Large-Scale Exploratory Analyses
explore Simplifies Exploratory Data Analysis
exploreR Tools for Quickly Exploring Data
expm Matrix Exponential, Log, 'etc'
export Streamlined Export of Graphs and Data Tables
expowo An R Package for Mining Global Plant Diversity
and Distribution Data
expperm Computing Expectations and Marginal Likelihoods
for Permutations
expsmooth Data Sets from "Forecasting with Exponential
Smoothing"
expss Tables, Labels and Some Useful Functions from
Spreadsheets and 'SPSS' Statistics
expstudy Tools for Actuarial Experience Studies
exreport Fast, Reliable and Elegant Reproducible
Research
extBatchMarking Extended Batch Marking Models
extRC Extended RC Models for Contingency Tables
extRemes Extreme Value Analysis
extendedFamily Additional Families for Generalized Linear
Models
exteriorMatch Constructs the Exterior Match from Two Matched
Control Groups
extlasso Maximum Penalized Likelihood Estimation with
Extended Lasso Penalty
extr Extinction Risk Estimation
extraDistr Additional Univariate and Multivariate
Distributions
extraSuperpower Power Calculation for Two-Way Factorial Designs
extractFAERS Extract Data from FAERS Database
extrafont Tools for Using Fonts
extrafontdb Holding the Database for the 'extrafont'
Package
extrafrail Estimation and Additional Tools for Alternative
Shared Frailty Models
extraoperators Extra Binary Relational and Logical Operators
extras Helper Functions for Bayesian Analyses
extrasteps More Miscellaneous Steps for the 'recipes'
Package
extraterrestrial Astrobiology Equations Estimating
Extraterrestrial Life
extremeIndex Forecast Verification for Extreme Events
extremeStat Extreme Value Statistics and Quantile
Estimation
extremefit Estimation of Extreme Conditional Quantiles and
Probabilities
extrememix Bayesian Estimation of Extreme Value Mixture
Models
extremevalues Univariate Outlier Detection
extremis Statistics of Extremes
extremogram Estimation of Extreme Value Dependence for Time
Series Data
exuber Econometric Analysis of Explosive Time Series
exvatools Value Added in Exports and Other Input-Output
Table Analysis Tools
eye Analysis of Eye Data
eyeTrackR Organising and Analysing Eye-Tracking Data
eyedata Open Source Ophthalmic Data Sets Curated for R
eyelinkReader Import Gaze Data for EyeLink Eye Tracker
eyelinker Import ASC Files from EyeLink Eye Trackers
eyeris Flexible, Extensible, & Reproducible
Pupillometry Preprocessing
eyetools Analyse Eye Data
eyetrackingR Eye-Tracking Data Analysis
ez Easy Analysis and Visualization of Factorial
Experiments
ez.combat Easy ComBat Harmonization
ezCutoffs Fit Measure Cutoffs in SEM
ezECM Event Categorization Matrix Classification for
Nuclear Detonations
ezTrack Tools for Exploring Animal Movement Data
ezcox Easily Process a Batch of Cox Models
ezec Easy Interface to Effective Concentration
Calculations
ezknitr Avoid the Typical Working Directory Pain When
Using 'knitr'
ezplot Functions for Common Chart Types
ezr Easy Use of R via Shiny App for Basic Analyses
of Experimental Data
f1dataR Access Formula 1 Data
f1pits F1 Pit Stop Datasets
fANCOVA Nonparametric Analysis of Covariance
fAssets Rmetrics - Analysing and Modelling Financial
Assets
fBasics Rmetrics - Markets and Basic Statistics
fBonds Rmetrics - Pricing and Evaluating Bonds
fChange Functional Change Point Detection and Analysis
fCopulae Rmetrics - Bivariate Dependence Structures with
Copulae
fDMA Dynamic Model Averaging and Dynamic Model
Selection for Continuous Outcomes
fEGarch SM/LM EGARCH & GARCH, VaR/ES Backtesting & Dual
LM Extensions
fExtremes Rmetrics - Modelling Extreme Events in Finance
fGarch Rmetrics - Autoregressive Conditional
Heteroskedastic Modelling
fHMM Fitting Hidden Markov Models to Financial Data
fICA Classical, Reloaded and Adaptive FastICA
Algorithms
fImport Rmetrics - Importing Economic and Financial
Data
fMRIscrub Scrubbing and Other Data Cleaning Routines for
fMRI
fMRItools Routines for Common fMRI Processing Tasks
fMultivar Rmetrics - Modeling of Multivariate Financial
Return Distributions
fNonlinear Rmetrics - Nonlinear and Chaotic Time Series
Modelling
fPASS Power and Sample Size for Projection Test under
Repeated Measures
fPortfolio Rmetrics - Portfolio Selection and Optimization
fRLR Fit Repeated Linear Regressions
fRegression Rmetrics - Regression Based Decision and
Prediction
fSRM Social Relations Analyses with Roles ("Family
SRM")
fTrading Rmetrics - Trading and Rebalancing Financial
Instruments
fUnitRoots Rmetrics - Modelling Trends and Unit Roots
fabCI FAB Confidence Intervals
fabMix Overfitting Bayesian Mixtures of Factor
Analyzers with Parsimonious Covariance and
Unknown Number of Components
fabPrediction Compute FAB (Frequentist and Bayes) Conformal
Prediction Intervals
fabR Wrapper Functions Collection Used in Data
Pipelines
fabia FABIA: Factor Analysis for Bicluster
Acquisition
fabisearch Change Point Detection in High-Dimensional Time
Series Networks
fable Forecasting Models for Tidy Time Series
fable.ata 'ATAforecasting' Modelling Interface for
'fable' Framework
fable.bayesRecon Bayesian Reconciliation in the 'fable'
Framework
fable.prophet Prophet Modelling Interface for 'fable'
fableCount INGARCH and GLARMA Models for Count Time Series
in Fable Framework
fabletools Core Tools for Packages in the 'fable'
Framework
fabricQueryR Query Data in 'Microsoft Fabric'
fabricatr Imagine Your Data Before You Collect It
fabricerin Create Easily Canvas in 'shiny' and 'RMarkdown'
Documents
face Fast Covariance Estimation for Sparse
Functional Data
facebookadsR Access to Facebook Ads via the 'Windsor.ai' API
facebookleadsR Get Facebook Leads Ads Data via the
'Windsor.ai' API
facebookorganicR Get Data from 'Facebook Organic' via the
'Windsor.ai' API
facerec An Interface for Face Recognition
facilityepimath Analyze Mathematical Models of Healthcare
Facility Transmission
facmodCS Cross-Section Factor Models
facmodTS Time Series Factor Models for Asset Returns
factReg Multi-Environment Genomic Prediction with
Penalized Factorial Regression
factiv Instrumental Variables Estimation for 2^k
Factorial Experiments
factoextra Extract and Visualize the Results of
Multivariate Data Analyses
factoptd Factorial Optimal Designs for Two-Colour cDNA
Microarray Experiments
factor.switching Post-Processing MCMC Outputs of Bayesian Factor
Analytic Models
factor256 Use Raw Vectors to Minimize Memory Consumption
of Factors
factorEx Design and Analysis for Factorial Experiments
factorH Multifactor Nonparametric Rank-Based ANOVA with
Post Hoc Tests
factorana Factor Model Estimation with Latent Variables
factormodel Factor Model Estimation Using Proxy Variables
factorplot Presenting Pairwise Comparisons
factorselect Eigenvalue-Based Estimation of the Number of
Factors in Approximate Factor Models
factorstochvol Bayesian Estimation of (Sparse) Latent Factor
Stochastic Volatility Models
factory Build Function Factories
factree Factor-Augmented Clustering Tree
factset.protobuf.stach.v2
'FactSet' 'STACH V2' Library
fad Factor Analysis for Data
faersquarterlydata FDA Adverse Event Reporting System Quarterly
Data Extracting Tool
fahb Design and Analysis of Pilot Trials Assessing
Recruitment Feasibility
fail File Abstraction Interface Layer (FAIL)
fairGATE Fair Gated Algorithm for Targeted Equity
fairGNN Fairness-Aware Gated Neural Networks
fairadapt Fair Data Adaptation with Quantile Preservation
fairmetrics Fairness Evaluation Metrics with Confidence
Intervals for Binary Protected Attributes
fairml Fair Models in Machine Learning
fairmodels Flexible Tool for Bias Detection,
Visualization, and Mitigation
fairness Algorithmic Fairness Metrics
fairsubset Choose Representative Subsets
fake Flexible Data Simulation Using the Multivariate
Normal Distribution
fakemake Mock the Unix Make Utility
fakir Generate Fake Datasets for Prototyping and
Teaching
fakmct Fuzzy Adaptive Resonance Theory K-Means
Clustering Technique
falcon Finding Allele-Specific Copy Number in
Next-Generation Sequencing Data
falconx Finding Allele-Specific Copy Number in
Whole-Exome Sequencing Data
fam.recrisk Familial Recurrence Risk
famSKATRC Family Sequence Kernel Association Test for
Rare and Common Variants
familial Statistical Tests of Familial Hypotheses
familiar End-to-End Automated Machine Learning and Model
Evaluation
famish Flexibly Tune Families of Probability
Distributions
fanc Penalized Likelihood Factor Analysis via
Nonconvex Penalty
fancycut A Fancy Version of 'base::cut'
fangs Feature Allocation Neighborhood Greedy Search
Algorithm
fanplot Visualisation of Sequential Probability
Distributions Using Fan Charts
fansi ANSI Control Sequence Aware String Functions
fanyi Translate Words or Sentences via Online
Translators
faoutlier Influential Case Detection Methods for Factor
Analysis and Structural Equation Models
faq Create FAQ Page
far Modelization for Functional AutoRegressive
Processes
faraway Datasets and Functions for Books by Julian
Faraway
farff A Faster 'ARFF' File Reader and Writer
farr Data and Code for Empirical Research in
Accounting
farrell Interactive Interface to Data Envelopment
Analysis Modeling
farver High Performance Colour Space Manipulation
fasano.franceschini.test
Fasano-Franceschini Test: A Multivariate
Kolmogorov-Smirnov Two-Sample Test
fase Functional Adjacency Spectral Embedding
fasster Fast Additive Switching of Seasonality, Trend,
and Exogenous Regressors
fasstr Analyze, Summarize, and Visualize Daily
Streamflow Data
fastAFT Fast Regression for the Accelerated Failure
Time (AFT) Model
fastDummies Fast Creation of Dummy (Binary) Columns and
Rows from Categorical Variables
fastFGEE Fast Functional Generalized Estimating
Equations via a One-Step Estimator
fastFMM Fast Functional Mixed Models using Fast
Univariate Inference
fastGHQuad Fast 'Rcpp' Implementation of Gauss-Hermite
Quadrature
fastGLCM 'GLCM' Texture Features
fastGraph Fast Drawing and Shading of Graphs of
Statistical Distributions
fastICA FastICA Algorithms to Perform ICA and
Projection Pursuit
fastJT Efficient Jonckheere-Terpstra Test Statistics
for Robust Machine Learning and Genome-Wide
Association Studies
fastLink Fast Probabilistic Record Linkage with Missing
Data
fastLogisticRegressionWrap
Fast Logistic Regression Wrapper
fastM Fast Computation of Multivariate M-Estimators
fastMatMR High-Performance Matrix Market File Operations
fastNaiveBayes Extremely Fast Implementation of a Naive Bayes
Classifier
fastOnlineCpt Online Multivariate Changepoint Detection
fastPLS A Fast Implementation of Partial Least Square
fastQR Fast QR Decomposition and Update
fastR2 Foundations and Applications of Statistics
Using R (2nd Edition)
fastRG Sample Generalized Random Dot Product Graphs in
Linear Time
fastRhockey Functions to Access Premier Hockey Federation
and National Hockey League Play by Play Data
fastTS Fast Time Series Modeling for Seasonal Series
with Exogenous Variables
fastText Efficient Learning of Word Representations and
Sentence Classification
fastTextR An Interface to the 'fastText' Library
fastTopics Fast Algorithms for Fitting Topic Models and
Non-Negative Matrix Factorizations to Count
Data
fastVoteR Efficient Voting Methods for Committee
Selection
fastWavelets Compute Maximal Overlap Discrete Wavelet
Transform (MODWT) and À Trous Discrete Wavelet
Transform
fasta Fast Adaptive Shrinkage/Thresholding Algorithm
fastadi Self-Tuning Data Adaptive Matrix Imputation
fastai Interface to 'fastai'
fastbackward Fast Backward Elimination Based on Information
Criterion
fastbeta Fast Approximation of Time-Varying Infectious
Disease Transmission Rates
fastbioclim Scalable and Flexible Derivation of Custom-Time
Bioclimatic and Environmental Summary Variables
fastcluster Fast Hierarchical Clustering Routines for R and
'Python'
fastcox Lasso and Elastic-Net Penalized Cox's
Regression in High Dimensions Models using the
Cocktail Algorithm
fastcpd Fast Change Point Detection via Sequential
Gradient Descent
fastdid Fast Staggered Difference-in-Difference
Estimators
fastei Methods for ''A Fast Alternative for the R x C
Ecological Inference Case''
fasterRaster Faster Raster and Spatial Vector Processing
Using 'GRASS'
fasterize Fast Polygon to Raster Conversion
fastfocal Fast Multiscale Raster Extraction and Moving
Window Analysis with FFT
fastgeojson High-Performance 'GeoJSON' and 'JSON'
Serialization
fastglm Fast and Stable Fitting of Generalized Linear
Models using 'RcppEigen'
fastglmpca Fast Algorithms for Generalized Principal
Component Analysis
fastkmedoids Faster K-Medoids Clustering Algorithms:
FastPAM, FastCLARA, FastCLARANS
fastkqr A Fast Algorithm for Kernel Quantile Regression
fastliu Fast Functions for Liu Regression with
Regularization Parameter and Statistics
fastlogitME Basic Marginal Effects for Logit Models
fastlpr Fast Local Polynomial Regression and Kernel
Density Estimation
fastmap Fast Data Structures
fastmatch Fast 'match()' Function
fastmatrix Fast Computation of some Matrices Useful in
Statistics
fastmit Fast Mutual Information Based Independence Test
fastml Guarded Resampling Workflows for Safe and
Automated Machine Learning in R
fastnet Large-Scale Social Network Analysis
fastplyr Fast Alternatives to 'tidyverse' Functions
fastpng Read and Write PNG Files with Configurable
Decoder/Encoder Options
fastpolicytree Constructs Policy Trees from Covariate and
Reward Data
fastpos Finds the Critical Sequential Point of
Stability for a Pearson Correlation
fastqcr Quality Control of Sequencing Data
fastqq Faster Generation of Quantile Quantile Plots
with Large Samples
fastqrs Fast Algorithms for Quantile Regression with
Selection
fastrc Fast Reverse Complement of DNA and RNA
Sequences
fastreg Fast Conversion and Querying of Danish
Registers with 'Parquet'
fastrep Time-Saving Package for Creating Reports
fastrerandomize Hardware-Accelerated Rerandomization for
Improved Balance
fastrmodels Models for the 'nflfastR' Package
fasttime Fast Utility Function for Time Parsing and
Conversion
fasttreeid Identifies Parameters in a Tree-Shaped SCM
fastverse A Suite of High-Performance Packages for
Statistics and Data Manipulation
fastymd Fast Utilities for Year Month Day Objects
fat2Lpoly Two-Locus Family-Based Association Test with
Polytomous Outcome
faunabr Explore Catálogo Taxônomico da Fauna do Brasil
Database
faux Simulation for Factorial Designs
fauxnaif Convert Values to NA
fauxpas HTTP Error Helpers
favawesome 'Font Awesome' Icons as 'shiny' 'favicons'
faviconPlease Find the URL to the 'Favicon' for a Website
favnums A Dataset of Favourite Numbers
favr Function Argument Validation
fb4package 'Fish Bioenergetics 4.0' Model Implementation
with High-Performance 'TMB' Backend
fbRads Analyzing and Managing Facebook Ads from R
fbardl Fourier Bootstrap ARDL Cointegration Test
fbati Gene by Environment Interaction and Conditional
Gene Tests for Nuclear Families
fbglm Fractional Binomial Regression Model
fbnet Forensic Bayesian Networks
fbroc Fast Algorithms to Bootstrap Receiver Operating
Characteristics Curves
fbst The Full Bayesian Evidence Test, Full Bayesian
Significance Test and the e-Value
fca Floating Catchment Area (FCA) Methods to
Calculate Spatial Accessibility
fcaR Formal Concept Analysis
fcall Parse Farm Credit Administration Call Report
Data into Tidy Data Frames
fcci Feldman-Cousins Confidence Intervals
fcfdr Flexible cFDR
fcl A Financial Calculator
fclust Fuzzy Clustering
fcm Inference of Fuzzy Cognitive Maps (FCMs)
fcmfd Fuzzy C-Means for Fuzzy Data
fcp Function Composition
fcros A Method to Search for Differentially Expressed
Genes and to Detect Recurrent Chromosomal Copy
Number Aberrations
fctutils Advanced Factor Manipulation Utilities
fcuk The Ultimate Helper for Clumsy Fingers
fdANOVA Analysis of Variance for Univariate and
Multivariate Functional Data
fdWasserstein Application of Optimal Transport to Functional
Data Analysis
fda Functional Data Analysis
fda.usc Functional Data Analysis and Utilities for
Statistical Computing
fdaACF Autocorrelation Function for Functional Time
Series
fdaMixed Functional Data Analysis in a Mixed Model
Framework
fdaMocca Model-Based Clustering for Functional Data with
Covariates
fdaPDE Physics-Informed Spatial and Functional Data
Analysis
fdaPOIFD Partially Observed Integrated Functional Depth
fdaSP Sparse Functional Data Analysis Methods
fdacluster Joint Clustering and Alignment of Functional
Data
fdaconcur Concurrent Regression and History Index Models
for Functional Data
fdadensity Functional Data Analysis for Density Functions
by Transformation to a Hilbert Space
fdaoutlier Outlier Detection Tools for Functional Data
Analysis
fdapace Functional Data Analysis and Empirical Dynamics
fdapaceShiny A Shiny App for the 'fdapace' Package
fdarep Two-Dimensional FPCA, Marginal FPCA, and
Product FPCA for Repeated Functional Data
fdasrvf Elastic Functional Data Analysis
fdatest Interval Testing Procedure for Functional Data
fdclassify Supervised Classification for Functional Data
via Signed Depth
fddm Fast Implementation of the Diffusion Decision
Model
fdesigns Optimal Experimental Designs for
Dynamic/Functional Models
fdicdata Accessing FDIC Bank Data
fdid Factorial Difference-in-Differences
fdm2id Data Mining and R Programming for Beginners
fdp f-Differential Privacy and Gaussian
Differential Privacy
fdq Forest Data Quality
fdrDiscreteNull False Discovery Rate Procedures Under Discrete
and Heterogeneous Null Distributions
fdrci Permutation-Based FDR Point and Confidence
Interval Estimation
fdrtool Estimation of (Local) False Discovery Rates and
Higher Criticism
fds Functional Data Sets
fdth Frequency Distribution Tables, Histograms and
Polygons
feasts Feature Extraction and Statistics for Time
Series
featForge Automated Feature Engineering for Credit
Scoring
featdelta Incremental Feature Engineering with Database
Persistence
feather R Bindings to the Feather 'API'
feature Local Inferential Feature Significance for
Multivariate Kernel Density Estimation
featureCorMatrix Measurement Level Independent Feature
Correlation Matrix
featurefinder Feature Finder
featureflag Turn Features On and Off using Feature Flags
features Feature Extraction for Discretely-Sampled
Functional Data
featurizer Some Helper Functions that Help Create Features
from Data
fec16 Data Package for the 2016 United States Federal
Elections
fechner Fechnerian Scaling of Discrete Object Sets
fect Fixed Effects Counterfactual Estimators
federalregister Client Package for the U.S. Federal Register
API
fedmatch Fast, Flexible, and User-Friendly Record
Linkage Methods
fedstatAPIr Unofficial API for Fedstat (Rosstat EMISS
System) for Automatic and Efficient Data
Queries
fedz1 An Easier Access to Financial Accounts of the
United States(Z.1)
fee Estimate the First-Exposure Effect (FEE) using
Count Data Models
feisr Estimating Fixed Effects Individual Slope
Models
fejiv Fixed Effect Jackknife Instrumental Variables
Estimation
felp Functional Help for Functions, Objects, and
Packages
feltr Access the Felt API
fence Using Fence Methods for Model Selection
fermicatsR Fermi Large Area Telescope Catalogs
ferrn Facilitate Exploration of touRR optimisatioN
fertilmodel Fertility Models
fetch Fetch Data from Various Data Sources
fetchGoogleAnalyticsR Get Data from Google Analytics via the
'Windsor.ai' API
fetchSalesforceR Get Data from Salesforce via the 'Windsor.ai'
API
fetwfe Fused Extended Two-Way Fixed Effects
ff Memory-Efficient Storage of Large Data on Disk
and Fast Access Functions
ffaframework Flood Frequency Analysis Framework
ffiec R Interface to 'FFIEC Central Data Repository
REST API' Service
ffm Download Official Spatial Data from Germany
ffmanova Fifty-Fifty MANOVA
ffp Fully Flexible Probabilities for Stress Testing
and Portfolio Construction
ffscrapr API Client for Fantasy Football League
Platforms
fftab Tidy Manipulation of Fourier Transformed Data
fftw Fast FFT and DCT Based on the FFTW Library
fftwtools Wrapper for 'FFTW3' Includes: One-Dimensional,
Two-Dimensional, Three-Dimensional, and
Multivariate Transforms
fgdiR Functional Gait Deviation Index
fgeo Analyze Forest Diversity and Dynamics
fgeo.analyze Analyze ForestGEO Data
fgeo.plot Plot ForestGEO Data
fgeo.tool Import and Manipulate 'ForestGEO' Data
fgeo.x Access Small ForestGEO Datasets For Examples
fgitR Using 'FastGit' to Accelerate the Access to
'GitHub'
fglsnet A Feasible Generalized Least Squares Estimator
for Regression Analysis of Outcomes with
Network Dependence
fgsea Fast Gene Set Enrichment Analysis
fgui Function GUI
fhircrackr Handling HL7 FHIR® Resources in R
fiber S7 Data Structures for Diffusion MRI
Tractography
fiberLD Fiber Length Determination
fibos Occlusion Surface Using the Occluded Surface
and Fibonacci Occluded Surface
fic Focused Information Criteria for Model
Comparison
fidelius Browser-Side Password-Protected HTML Documents
fido Bayesian Multinomial Logistic Normal Regression
fields Tools for Spatial Data
fiery A Lightweight and Flexible Web Framework
fig A Config Package with No "Con"
figir Check Validity of FIGI, CUSIP, ISIN, SEDOL
figma Web Client/Wrapper to the 'Figma API'
figpatch Easily Arrange External Figures with Patchwork
Alongside 'ggplot2' Figures
file2meco Transform Files to 'microtable' Object with
'microeco' Package
fileaccess File and Directory Access Validation
filearray File-Backed Array for Out-of-Memory Computation
filebin Wrapper for the Filebin File Sharing API
filecacher File Cacher
filehash Simple Key-Value Database
filehashSQLite Simple Key-Value Database using SQLite
filelock Portable File Locking
filematrix File-Backed Matrix Class with Convenient Read
and Write Access
filenamer Easy Management of File Names
files Effective File Navigation from the R Console
filesstrings Handy File and String Manipulation
filibustr Data Utilities for Congressional Research
filling Matrix Completion, Imputation, and Inpainting
Methods
fillpattern Patterned Fills for 'ggplot2' and 'grid'
Graphics
fillr Fill Missing Values in Vectors
filterNHP Non-Human Primate Search Filters
filters A "Snake_case" Filter System for R
filtro Feature Selection Using Supervised Filter-Based
Methods
finalfit Quickly Create Elegant Regression Results
Tables and Plots when Modelling
finalsize Calculate the Final Size of an Epidemic
finbif Interface for the 'Finnish Biodiversity
Information Facility' API
finch Parse Darwin Core Files
findGSEP Estimate Genome Size of Polyploid Species Using
k-Mer Frequencies
findInFiles Find Pattern in Files
findInGit Find Pattern in Files of All Branches of a
'git' Repository
findPackage Find 'CRAN' Package by Topic
findR Find Code Snippets, R Scripts, R Markdown, PDF
and Text Files with Pattern Matching
findSVI Calculate Social Vulnerability Index for
Communities
findn Simulation Based Sample Size Estimation
findpython Functions to Find an Acceptable Python Binary
findviews A View Generator for Multidimensional Data
finetune Additional Functions for Model Tuning
fingerPro Unmixing Model Framework
fingerprint Functions to Operate on Binary Fingerprint Data
finiteruinprob Computation of the Probability of Ruin Within a
Finite Time Horizon
finity Test for Finiteness of Moments in a
Distribution
finlabR Portfolio Analytics and Simulation Toolkit
finna Access the 'Finna' API
finnishgrid 'Fingrid Open Data API' R Client
finnsurveytext Analyse Open-Ended Survey Responses in Finnish
finnts Microsoft Finance Time Series Forecasting
Framework
finto Access the 'Finto' API
fio Friendly Input-Output Analysis
fioRa Mass-Spectra Prediction Using the FIORA Model
fiodata Regional and Multi-Regional Input-Output Data
fipio Lightweight Federal Information Processing
System (FIPS) Code Information Retrieval
firebase Integrates 'Google Firebase' Authentication
Storage, and 'Analytics' with 'Shiny'
firebase.auth.rest R Wrapper for 'Firebase Authentication REST
API'
fireexposuR Compute and Visualize Wildfire Exposure
fireproof Authentication and Authorization for 'fiery'
Servers
firesafety A Collection of Security Related Plugins for
'fiery'
firesale Datastore for 'fiery' Web Servers
firestorm Reverse Proxy and Load Balancing for 'fiery'
firmmatchr Robust Probabilistic Matching for German
Company Names
first Factor Importance Ranking and Selection using
Total Indices
fishMod Fits Poisson-Sum-of-Gammas GLMs, Tweedie GLMs,
and Delta Log-Normal Models
fishRman The Fisheries Scientist's Toolbox
fishbc Fishes of British Columbia
fishdata A Small Collection of Fish Population Datasets
fisheye Transform Base Maps Using Log-Azimuthal
Projection
fishgrowth Fit Growth Curves to Fish Data
fishkirkko2015 Dataset of Measurements of Fish Species at
Kirkkojarvi Lake, Finland
fishmechr Computes Kinematic Parameters for Swimming
fishmethods Fishery Science Methods and Models
fishstat Global Fishery and Aquaculture Statistics
fishtree Interface to the Fish Tree of Life API
fishualize Color Palettes Based on Fish Species
fit.models Compare Fitted Models
fitConic Fit Data to Any Conic Section
fitHeavyTail Mean and Covariance Matrix Estimation under
Heavy Tails
fitODBOD Modeling Over Dispersed Binomial Outcome Data
Using BMD and ABD
fitODBODRshiny 'Shiny' Application for R Package 'fitODBOD'
fitPS Fit Zeta Distributions to Forensic Data
fitPlotR Plotting Probability Distributions
fitPoly Genotype Calling for Bi-Allelic Marker Assays
fitVARMxID Fit the Vector Autoregressive Model for
Multiple Individuals
fitbitScraper Scrapes Data from Fitbit
fitbitViz 'Fitbit' Visualizations
fitbitr Interface with the 'Fitbit' API
fitdistcp Distribution Fitting with Calibrating Priors
for Commonly Used Distributions
fitdistrplus Help to Fit of a Parametric Distribution to
Non-Censored or Censored Data
fitlandr Fit Vector Fields and Potential Landscapes from
Intensive Longitudinal Data
fitmix Finite Mixture Model Fitting of Lifespan
Datasets
fitnmr Multidimensional Nuclear Magnetic Resonance
Peak Fitting and Analysis
fitplc Fit Hydraulic Vulnerability Curves
fitscape Classes for Fitness Landscapes and Seascapes
fitteR Fit Hundreds of Theoretical Distributions to
Empirical Data
fitur Fit Univariate Distributions
fitzRoy Easily Scrape and Process AFL Data
fivethirtyeight Data and Code Behind the Stories and
Interactives at 'FiveThirtyEight'
fixedTimeEvents The Distribution of Distances Between Discrete
Events in Fixed Time
fixerapi An R Client for the "Fixer.io" Currency API
fixes Staggered DiD Tools: Event Studies and ATT
Aggregation
fixest Fast Fixed-Effects Estimations
fixr Fixing Data Made Easy for Statistical Analysis
fizzbuzzR Fizz Buzz Implementation
fjohansen Johansen Cointegration Test with Fourier-Type
Smooth Nonlinear Trends
fjoin Data Frame Joins Leveraging 'data.table'
fkbma Free Knot-Bayesian Model Averaging
fkcentroids Functional K-Centroids Clustering Using Phase
and Amplitude Components
flagr Implementation of Flag Aggregation
flam Fits Piecewise Constant Models with
Data-Adaptive Knots
flametree Generate Random Tree-Like Images
flan FLuctuation ANalysis on Mutation Models
flankr Implementing Computational Models of
Attentional Selectivity
flap Forecast Linear Augmented Projection
flare Family of Lasso Regression
flashCard Create a Flash Card
flashClust Implementation of Fast Hierarchical Clustering
flashier Empirical Bayes Matrix Factorization
flashlight Shed Light on Black Box Machine Learning Models
flashr Create Flashcards of Terms and Definitions
flassomsm Penalized Estimation for Multi-State Models
with Lasso and Fused Penalties
flatr Transforms Contingency Tables to Data Frames,
and Analyses Them
flattabler Obtaining a Flat Table from Pivot Tables
flatxml Tools for Working with XML Files as R
Dataframes
fledge Smoother Change Tracking and Versioning for R
Packages
flevr Flexible, Ensemble-Based Variable Selection
with Potentially Missing Data
flex Fuzzy Linear Squares Estimation with Explicit
Formula (FLEX)
flexBART A More Flexible BART Model
flexBCF Fast & Flexible Implementation of Bayesian
Causal Forests
flexCWM Flexible Cluster-Weighted Modeling
flexCausal Causal Effect Estimation via Doubly Robust
One-Step Estimators and TMLE in Graphical
Models with Unmeasured Variables
flexCountReg Estimation of a Variety of Count Regression
Models
flexFitR Flexible Non-Linear Least Square Model Fitting
flexIC Flexible Rank-Preserving Correlation Engine
flexclust Flexible Cluster Algorithms
flexdashboard R Markdown Format for Flexible Dashboards
flexhaz Dynamic Failure Rate Distributions for Survival
Analysis
flexiblas 'FlexiBLAS' API Interface
flexlsx Exporting 'flextable' to 'xlsx' Files
flexmet Flexible Latent Trait Metrics using the
Filtered Monotonic Polynomial Item Response
Model
flexmix Flexible Mixture Modeling
flexmsm A General Framework for Flexible Multi-State
Survival Modelling
flexoki Inky Color Schemes
flexord Flexible Clustering of Ordinal and
Mixed-with-Ordinal Data
flexpolyline Flexible Polyline Encoding
flexrsurv Flexible Relative Survival Analysis
flexsiteboard Breaks Single Page Applications from
'flexdashboard' in Multiple Files
flexsurv Flexible Parametric Survival and Multi-State
Models
flexsurvcure Flexible Parametric Cure Models
flextable Functions for Tabular Reporting
flexurba Construct Flexible Urban Delineations
flightsbr Download Flight and Airport Data from Brazil
flimo Fixed Landscape Inference Method
flint Fast Library for Number Theory
flintyR Simple and Flexible Tests of Sample
Exchangeability
flip Multivariate Permutation Tests
flipbookr Parses Code, Creates Partial Code Builds,
Delivers Code Movie
flipdownWidgets A Wrapper of JavaScript Library 'flipdown.js'
flipdownr Implement a Countdown in 'RMarkdown' Documents
and 'shiny' Applications
flippant Dithionite Scramblase Assay Analysis
flipr Flexible Inference via Permutations in R
flipscores Robust Score Testing in GLMs, by Sign-Flip
Contributions
flir Find and Fix Lints in R Code
float 32-Bit Floats
flock Process Synchronization Using File Locks
flocker Flexible Occupancy Estimation with Stan
flood Statistical Methods for the (Regional) Analysis
of Flood Frequency
flora Tools for Interacting with the Brazilian Flora
2020
florabr Explore Flora e Funga do Brasil Database
flourishcharts 'Flourish' for 'R' and 'Python'
flow View and Browse Code Using Flow Diagrams
flowTraceR Tracing Information Flow for Inter-Software
Comparisons in Mass Spectrometry-Based
Bottom-Up Proteomics
flowchart Tidy Flowchart Generator
flowcluster Cluster Origin-Destination Flow Data
flowmapblue Flow Map Rendering
flowmapper Draw Flows (Migration, Goods, Money,
Information) on 'ggplot2' Plots
flownet Transport Modeling: Network Processing, Route
Enumeration, and Traffic Assignment
flps Fully-Latent Principal Stratification
flsa Path Algorithm for the General Fused Lasso
Signal Approximator
fluffy Schema-Based Validation of 'R' Objects with
User-Defined Rules
fluidsynth Read and Play Digital Music (MIDI)
fluoSurv Estimate Insect Survival from Fluorescence Data
fluorojip Analysis of Chlorophyll a Fluorescence
Transient Parameters
fluspect Fluspect-B
fluxfinder Parsing, Computation, and Diagnostics for
Greenhouse Gas Measurements
fluxfixer Advanced Framework for Sap Flow Data
Post-Process
fluxible Ecosystem Gas Fluxes Calculations for Closed
Loop Chamber Setup
fluxtools A 'shiny' App for Reproducible QA/QC of Eddy
Covariance Data
fluxweb Estimate Energy Fluxes in Food Webs
flying Simulation of Bird Flight Range
fma Data Sets from "Forecasting: Methods and
Applications" by Makridakis, Wheelwright &
Hyndman (1998)
fmcmc A friendly MCMC framework
fmcsR Mismatch Tolerant Maximum Common Substructure
Searching
fmds Multidimensional Scaling Development Kit
fmdu (Restricted) [external] Multidimensional
Unfolding
fmeffects Model-Agnostic Interpretations with Forward
Marginal Effects
fmesher Triangle Meshes and Related Geometry Tools
fmi Hierarchical Permutation Tests for Functional
Measurement Invariance
fmpapi Flexible Client for the 'Financial Modeling
Prep' API
fmpcloudr R Access to the 'FMP Cloud' and 'Financial
Modeling Prep' API
fmri Analysis of fMRI Experiments
fmriAR Fast AR and ARMA Noise Whitening for Functional
MRI (fMRI) Design and Data
fmrihrf Hemodynamic Response Functions for fMRI Data
Analysis
fmriqa Functional MRI Quality Assurance Routines
fmrs Variable Selection in Finite Mixture of AFT
Regression and FMR Models
fmsb Functions for Medical Statistics Book with some
Demographic Data
fmt Variance Estimation of FMT Method (Fully
Moderated T-Statistic)
fmtr Easily Apply Formats to Data
fmx Finite Mixture Parametrization
fnets Factor-Adjusted Network Estimation and
Forecasting for High-Dimensional Time Series
fntl Numerical Tools for 'Rcpp' and Lambda Functions
focus Online Changepoint Detection in Univariate and
Multivariate Data Streams
focusedMDS Focused, Interactive Multidimensional Scaling
foghorn Summarize CRAN Check Results in the Terminal
folda Forward Stepwise Discriminant Analysis with
Pillai's Trace
foldedt The Folded t Family of Distributions
folders Standardized Folder Names
folio Datasets for Teaching Archaeology and
Paleontology
fomantic.plus Add Extra 'Fomantic UI' Components to
'shiny.semantic'
fonctionr Easy Estimation and Vizualisation of Indicators
from Data with Complex Design
fontBitstreamVera Fonts with 'Bitstream Vera Fonts' License
fontLiberation Liberation Fonts
fontawesome Easily Work with 'Font Awesome' Icons
fontcm Computer Modern Font for Use with Extrafont
Package
fontquiver Set of Installed Fonts
foodquotient Food Quotient and Nutrient Analysis for HSFFQ
foodwebWrapper Enhanced Wrapper to Show Which Functions Call
What
foodwebr Visualise Function Dependencies
footBayes Fitting Bayesian and MLE Football Models
footballpenaltiesBL Penalties in the German Men's Football
Bundesliga
footprint Calculate Air Travel Emissions
foqat Field Observation Quick Analysis Toolkit
forams Foraminifera and Community Ecology Analyses
forcats Tools for Working with Categorical Variables
(Factors)
forceR Force Measurement Analyses
forceplate Processing Force-Plate Data
forcis Handle the FORCIS Foraminifera Database
foreach Provides Foreach Looping Construct
forecTheta Forecasting Time Series by Theta Models
forecast Forecasting Functions for Time Series and
Linear Models
forecastADAPT Computation of Adaptive Forecast
forecastHybrid Convenient Functions for Ensemble Time Series
Forecasts
forecastLSW Forecasting Routines for Locally Stationary
Wavelet Processes
forecasteR Time Series Forecast System
forensicolors Forensic Colors
forensicpopdata Allele Frequency Data for Human Genetic Markers
forensim Interpretation of Forensic DNA Mixtures
forestBalance Balancing Confounder Distributions with Forest
Energy Balancing
forestControl Approximate False Positive Rate Control in
Selection Frequency for Random Forest
forestError A Unified Framework for Random Forest
Prediction Error Estimation
forestGYM Forest Growth and Yield Model Based on Clutter
Model
forestHES Forest Health Evaluation System at the Forest
Stand Level
forestSAS Forest Spatial Structure Analysis Systems
forestat Forest Carbon Sequestration and Potential
Productivity Calculation
forestecology Fitting and Assessing Neighborhood Models of
the Effect of Interspecific Competition on the
Growth of Trees
forested Forest Attributes in U.S. States
forestinventory Design-Based Global and Small-Area Estimations
for Multiphase Forest Inventories
forestly Interactive Forest Plot
forestmangr Forest Mensuration and Management
forestmodel Forest Plots from Regression Models
forestplot Advanced Forest Plot Using 'grid' Graphics
forestploter Create a Flexible Forest Plot
forestr Ecosystem and Canopy Structural Complexity
Metrics from LiDAR
forestry Reshape Data Tree
forestsearch Exploratory Subgroup Identification in Clinical
Trials with Survival Endpoints
foretell Projecting Customer Retention Based on Fader
and Hardie Probability Models
forge Casting Values into Shape
forgts Convert Formatted Spreadsheets to
Presentation-Ready Display Tables
formatBibtex Format BibTeX Entries and Files
formatR Format R Code Automatically
formatdown Formatting Numbers in 'rmarkdown' Documents
formattable Create 'Formattable' Data Structures
formatters ASCII Formatting for Values and Tables
formods 'Shiny' Modules for General Tasks
formr Companion R Package for the 'formr' Survey
Framework
formula.tools Programmatic Utilities for Manipulating
Formulas, Expressions, Calls, Assignments and
Other R Objects
formulaic Dynamic Generation and Quality Checks of
Formula Objects
formulops Mathematical Operations on R Formula
forplo Flexible Forest Plots
forrel Forensic Pedigree Analysis and Relatedness
Inference
forrest Publication-Ready Forest Plots
forstringr String Manipulation Package for Those Familiar
with 'Microsoft Excel'
fortniteR Access 'Fortnite Ecosystem' API
fortunes R Fortunes
forward Robust Analysis using Forward Search
forwards Data from Surveys Conducted by Forwards
fossil Palaeoecological and Palaeogeographical
Analysis Tools
fossilbrush Automated Cleaning of Fossil Occurrence Data
foto Fourier Transform Textural Ordination
foundry 'Palantir Foundry' Software Development Kit
fourierin Computes Numeric Fourier Integrals
fourinarow Play "Four in a Row"
fozziejoin Utilities for Joining Dataframes with Inexact
Matching
fpCompare Reliable Comparison of Floating Point Numbers
fpROC Fast Partial Receiver Operating Characteristic
(ROC) Test for Ecological Niche Modeling
fpa Spatio-Temporal Fixation Pattern Analysis
fpc Flexible Procedures for Clustering
fpeek Check Text Files Content at a Glance
fpest Estimating Finite Population Total
fplot Automatic Distribution Graphs Using Formulas
fplyr Apply Functions to Blocks of Files
fpod Read and Process 'FPOD' and 'CPOD' Data
fpop Segmentation using Optimal Partitioning and
Function Pruning
fpopw Weighted Segmentation using Functional Pruning
and Optimal Partioning
fpow Computing the Noncentrality Parameter of the
Noncentral F Distribution
fpp2 Data for "Forecasting: Principles and Practice"
(2nd Edition)
fpp3 Data for "Forecasting: Principles and Practice"
(3rd Edition)
fpsim Compute Measures of Foreign Policy
Similarity/Agreement
fptdApprox Approximation of First-Passage-Time Densities
for Diffusion Processes
fqacalc Calculate Floristic Quality Assessment Metrics
fqadata Contains Regional Floristic Quality Assessment
Databases
fqar Floristic Quality Assessment Tools for R
fqardl Fourier ARDL Methods: Quantile, Nonlinear,
Multi-Threshold & Unit Root Tests
fr Frictionless Standards
frab How to Add Two R Tables
fracARMA Fractionally Integrated ARMA Model
fracdiff Fractionally Differenced ARIMA aka
ARFIMA(P,d,q) Models
fracdist Numerical CDFs for Fractional Unit Root and
Cointegration Tests
fracprolif Fraction Proliferation via a Quiescent Growth
Model
fractD Estimation of Fractal Dimension of a Black Area
in 2D and 3D (Slices) Images
fractaldim Estimation of Fractal Dimensions
fractalforest Simulate Fractal Trees and Forests
fractional Vulgar Fractions in R
fracture Convert Decimals to Fractions
fragility Assessing and Visualizing Fragility of Clinical
Results with Binary Outcomes
frailtyEM Fitting Frailty Models with the EM Algorithm
frailtyHL Frailty Models via Hierarchical Likelihood
frailtyMMpen Efficient Algorithm for High-Dimensional
Frailty Model
frailtyROC Time-Dependent ROC Curve Estimation for
Correlated Right-Censored Survival Data
frailtySurv General Semiparametric Shared Frailty Model
frailtypack Shared, Joint (Generalized) Frailty Models;
Surrogate Endpoints
frair Tools for Functional Response Analysis
framecleaner Clean Data Frames
framework Structured Data Science Project Scaffolding
franc Detect the Language of Text
frapplot Automatic Data Processing and Visualization for
FRAP
frbinom Fractional Binomial Distributions
frbs Fuzzy Rule-Based Systems for Classification and
Regression Tasks
frechet Statistical Analysis for Random Objects and
Non-Euclidean Data
fred Access 'Federal Reserve Economic Data'
fredr An R Client for the 'FRED' API
free Flexible Regularized Estimating Equations
free1way.docreg Additional Documentation and Regression Tests
for 'stats::free1way()'
freealg The Free Algebra
freebird Estimation and Inference for High Dimensional
Mediation and Surrogate Analysis
freebsdcontribs 'FreeBSD' Contributor and Commit Statistics
freecurrencyapi Client for the 'freecurrencyapi.com' Currency
Conversion API
freedom Demonstration of Disease Freedom (DDF)
freegroup The Free Group
freestiler Create Vector Tiles from Spatial Data
freesurfer Wrapper Functions for 'Freesurfer'
freesurferformats Read and Write 'FreeSurfer' Neuroimaging File
Formats
freewall A Wrapper of the JavaScript Library 'Freewall'
frenchCurve Generate Open or Closed Interpolating Curves
frenchdata Download Data Sets from Kenneth's French
Finance Data Library Site
freqdist Frequency Distribution
freqdistributionNogives
Automated Cumulative Frequency Plots for
Grouped Distribution
freqdom Frequency Domain Based Analysis: Dynamic PCA
freqparcoord Novel Methods for Parallel Coordinates
freqpcr Estimates Allele Frequency on qPCR DeltaDeltaCq
from Bulk Samples
freqtables Make Quick Descriptive Tables for Categorical
Variables
frequency Easy Frequency Tables
frequencyConnectedness
Spectral Decomposition of Connectedness
Measures
frequentdirections Implementation of Frequent-Directions Algorithm
for Efficient Matrix Sketching
frequentistSSD Screened Selection Design with Survival
Endpoints
frequentistSSDBinary Screened Selection Design with Binary Endpoints
fresh Create Custom 'Bootstrap' Themes to Use in
'Shiny'
freshr Make R Environment Fresh Again
frheritage R Interface to Get French Heritage Data
frictionless Read and Write Frictionless Data Packages
friendlynumber Translate Numbers into Number Words
friends The Entire Transcript from Friends in Tidy
Format
fritools Utilities for the Forest Research Institute of
the State Baden-Wuerttemberg
fritools2 Utilities for the Forest Research Institute of
the State Baden-Wuerttemberg
froggeR Project Scaffolding for R and 'Quarto'
fromhere File Paths Relative to Project Roots
fromo Fast Robust Moments
frontier Stochastic Frontier Analysis
frontiles Partial Frontier Efficiency Analysis
frontmatter Parse Front Matter from Documents
frostr R API to MET Norway's 'Frost' API
froth Emulate a 'Forth' Programming Environment
frscore Calculate the Fit-Robustness of CNA-Solutions
fru A Blazing Fast Implementation of Random Forest
fruclimadapt Evaluation Tools for Assessing Climate
Adaptation of Fruit Tree Species
fs Cross-Platform File System Operations Based on
'libuv'
fsbrain Managing and Visualizing Brain Surface Data
fscache File System Cache
fsdaR Robust Data Analysis Through Monitoring and
Dynamic Visualization
fsemipar Estimation, Variable Selection and Prediction
for Functional Semiparametric Models
fsia Import and Analysis of OMR Data from
FormScanner
fslr Wrapper Functions for 'FSL' ('FMRIB' Software
Library) from Functional MRI of the Brain
('FMRIB')
fsn Rosenthal's Fail Safe Number and Related
Functions
fso Fuzzy Set Ordination
fspe Estimating the Number of Factors in EFA with
Out-of-Sample Prediction Errors
fsr Handling Fuzzy Spatial Data
fssg Parametric Survival Modeling in Bulk
fst Lightning Fast Serialization of Data Frames
fst4pg Genetic Distance Segmentation for Population
Genetics
fstcore R Bindings to the 'Fstlib' Library
fsthet Fst-Heterozygosity Smoothed Quantiles
ftDK A Wrapper for the API of the Danish Parliament
ftExtra Extensions for 'Flextable'
ftaproxim Fault Tree Analysis Based on Proxel Simulation
ftrCOOL Feature Extraction from Biological Sequences
ftsa Functional Time Series Analysis
fucom Full Consistency Method (FUCOM)
fude Utilities for Fude Polygon
fuel Framework for Unified Estimation in Lognormal
Models
fueleconomy EPA Fuel Economy Data
fugue Sensitivity Analysis Optimized for Matched Sets
of Varied Sizes
fuj Functions and Utilities for Jordan
fullROC Plot Full ROC Curves using Eyewitness Lineup
Data
fullRankMatrix Generation of Full Rank Design Matrix
fullfact Full Factorial Breeding Analysis
fun Use R for Fun
funData An S4 Class for Functional Data
funFEM Clustering in the Discriminative Functional
Subspace
funGp Gaussian Process Models for Scalar and
Functional Inputs
funHDDC Univariate and Multivariate Model-Based
Clustering in Group-Specific Functional
Subspaces
funIHC Functional Iterative Hierarchical Clustering
funMoDisco Motif Discovery in Functional Data
funModeling Exploratory Data Analysis and Data Preparation
Tool-Box
funStatTest Statistical Testing for Functional Data
funbootband Simultaneous Prediction and Confidence Bands
for Time Series Data
func2vis Clean and Visualize Over Expression Results
from 'ConsensusPathDB'
funcMapper Map User-Created Functions
funcharts Functional Control Charts
funchir Convenience Functions by Michael Chirico
funcml Functional Machine Learning Framework
functional Curry, Compose, and other higher-order
functions
functionals Functional Programming with Parallelism and
Progress Tracking
functiondepends Find Functions and their Dependencies
fundiversity Easy Computation of Functional Diversity
Indices
fungible Psychometric Functions from the Waller Lab
funique A Faster Unique Function
funkycells Functional Data Analysis for Multiplexed Cell
Images
funkyheatmap Generating Funky Heatmaps for Data Frames
funmediation Functional Mediation for a Distal Outcome
funnelR Funnel Plots for Proportion Data
funneljoin Time-Based Joins to Analyze Sequences of Events
funpca Functional Principal Component Analysis
funprog Functional Programming
funr Simple Utility Providing Terminal Access to all
R Functions
funrar Functional Rarity Indices Computation
funreg Functional Regression for Irregularly Timed
Data
funspace Creating and Representing Functional Trait
Spaces
funspotr Spot R Functions & Packages
funtimes Functions for Time Series Analysis
funviewR Visualize Function Call Dependencies in R
Source Code
furniture Furniture for Quantitative Scientists
furrr Apply Mapping Functions in Parallel using
Futures
fuseMLR Fusing Machine Learning in R
fusedMGM Implementation of Fused MGM to Infer 2-Class
Networks
fusedTree Fused Partitioned Regression for Clinical and
Omics Data
fusen Build a Package from Rmarkdown Files
fuser Fused Lasso for High-Dimensional Regression
over Groups
fusionchartsR Embedding FusionCharts in R
fusionclust Clustering and Feature Screening using L1
Fusion Penalty
fussclust Fuzzy Unsupervised and Semi-Supervised
Clustering
futile.logger A Logging Utility for R
futile.options Futile Options Management
futility Interim Analysis of Operational Futility in
Randomized Trials with Time-to-Event Endpoints
and Fixed Follow-Up
future Unified Parallel and Distributed Processing in
R for Everyone
future.apply Apply Function to Elements in Parallel using
Futures
future.batchtools A Future API for Parallel and Distributed
Processing using 'batchtools'
future.callr A Future API for Parallel Processing using
'callr'
future.mirai A 'Future' API for Parallel Processing using
'mirai'
future.tests Test Suite for 'Future API' Backends
futureverse Install 'Futureverse' in One Go
futurize Parallelize Common Functions via One Magic
Function
fuzzr Fuzz-Test R Functions
fuzzyRankTests Fuzzy Rank Tests and Confidence Intervals
fuzzySim Fuzzy Similarity in Species Distributions
fuzzyforest Fuzzy Forests
fuzzyjoin Join Tables Together on Inexact Matching
fuzzylink Probabilistic Record Linkage Using Pretrained
Text Embeddings
fuzzystring Fast Fuzzy String Joins for Data Frames
fuzzywuzzyR Fuzzy String Matching
fwb Fractional Weighted Bootstrap
fwlplot Scatter Plot After Residualizing Using 'fixest'
Package
fwtraits Extract Species Ecological Parameters from
Www.freshwaterecology.info
fxTWAPLS An Improved Version of WA-PLS
fxl 'fxl' Single Case Design Charting Package
fxregime Exchange Rate Regime Analysis
fy Utilities for Financial Years
g.data Delayed-Data Packages
g.ridge Generalized Ridge Regression for Linear Models
g6R Graph Visualisation Engine Widget for R and
'shiny' Apps
gCat Graph-Based Two-Sample Tests for Categorical
Data
gFormulaMI G-Formula for Causal Inference via Multiple
Imputation
gIPFrm Generalized Iterative Proportional Fitting for
Relational Models
gJLS2 A Generalized Joint Location and Scale
Framework for Association Testing
gKRLS Generalized Kernel Regularized Least Squares
gLRTH Genome-Wide Association and Linkage Analysis
under Heterogeneity
gMCP Graph Based Multiple Comparison Procedures
gMCPLite Lightweight Graph Based Multiple Comparison
Procedures
gMOIP Tools for 2D and 3D Plots of Single and
Multi-Objective Linear/Integer Programming
Models
gMWT Generalized Mann-Whitney Type Tests
gProfileR Interface to the 'g:Profiler' Toolkit
gRain Bayesian Networks
gRaven Bayes Nets: 'RHugin' Emulation with 'gRain'
gRbase A Package for Graphical Modelling in R
gRc Inference in Graphical Gaussian Models with
Edge and Vertex Symmetries
gRim Graphical Interaction Models
gSeg Graph-Based Change-Point Detection
(g-Segmentation)
gStream Graph-Based Sequential Change-Point Detection
for Streaming Data
gTests Graph-Based Two-Sample Tests
gTestsMulti New Graph-Based Multi-Sample Tests
gTestsPair New Nonparametric Tests for Multivariate Paired
Data and Pair Matching
gWQS Generalized Weighted Quantile Sum Regression
gWidgets2 Rewrite of gWidgets API for Simplified GUI
Construction
gWidgets2tcltk Toolkit Implementation of gWidgets2 for tcltk
gaawr2 Genetic Association Analysis
gadget3 Globally-Applicable Area Disaggregated General
Ecosystem Toolbox V3
gadjid Graph Adjustment Identification Distances for
Causal Graphs
gageRR Calculate Gauge Repeatability and
Reproducibility
galah Biodiversity Data from the GBIF Node Network
galamm Generalized Additive Latent and Mixed Models
galaxias Describe, Package, and Share Biodiversity Data
galisats Configuration of Jupiter's Four Largest
Satellites
gallery Generate Test Matrices for Numerical
Experiments
galts Genetic Algorithms and C-Steps Based LTS (Least
Trimmed Squares) Estimation
gam Generalized Additive Models
gam.hp Hierarchical Partitioning of Adjusted R2 and
Explained Deviance for Generalized Additive
Models
gamCopula Generalized Additive Models for Bivariate
Conditional Dependence Structures and Vine
Copulas
gamRR Calculate the RR for the GAM
gamair Data for 'GAMs: An Introduction with R'
gambin Fit the Gambin Model to Species Abundance
Distributions
gamboostLSS Boosting Methods for 'GAMLSS'
gamclass Functions and Data for a Course on Modern
Regression and Classification
gameR Color Palettes Inspired by Video Games
gamesGA Genetic Algorithm for Sequential Symmetric
Games
gamlr Gamma Lasso Regression
gamlss Generalized Additive Models for Location Scale
and Shape
gamlss.add Extra Additive Terms for Generalized Additive
Models for Location Scale and Shape
gamlss.cens Fitting an Interval Response Variable Using
`gamlss.family' Distributions
gamlss.data Data for Generalized Additive Models for
Location Scale and Shape
gamlss.dist Distributions for Generalized Additive Models
for Location Scale and Shape
gamlss.inf Fitting Mixed (Inflated and Adjusted)
Distributions
gamlss.lasso Extra Lasso-Type Additive Terms for GAMLSS
gamlss.mx Fitting Mixture Distributions with GAMLSS
gamlss.tr Generating and Fitting Truncated
`gamlss.family' Distributions
gamlssbssn Bimodal Skew Symmetric Normal Distribution
gamlssx Generalized Additive Extreme Value Models for
Location, Scale and Shape
gamm4 Generalized Additive Mixed Models using 'mgcv'
and 'lme4'
gammSlice Generalized Additive Mixed Model Analysis via
Slice Sampling
gamma Dose Rate Estimation from in-Situ Gamma-Ray
Spectrometry Measurements
gammaFuncModel Non-Linear Mixed Effects Model Based on the
Gamma Function Form
gammi Generalized Additive Mixed Model Interface
gamsel Fit Regularization Path for Generalized
Additive Models
gamselBayes Bayesian Generalized Additive Model Selection
gamstransfer A Data Interface Between 'GAMS' and R
gamutil Utilities to Facilitate Modeling Routines with
Generalized Additive Models
ganDataModel Build a Metric Subspaces Data Model for a Data
Source
ganGenerativeData Generate Generative Data for a Data Source
gander High Performance, Low Friction Large Language
Model Chat
ganttify Create Interactive Gantt Charts with Work
Breakdown Structure
gap Genetic Analysis Package
gap.datasets Datasets for 'gap'
gapclosing Estimate Gaps Under an Intervention
gapmap Drawing Gapped Cluster Heatmaps with 'ggplot2'
gapminder Data from Gapminder
garchx Flexible and Robust GARCH-X Modelling
gargle Utilities for Working with Google APIs
gargoyle An Event-Based Mechanism for 'Shiny'
garma Fitting and Forecasting Gegenbauer ARMA Time
Series Models
garray Generalized Array Arithmetic for Ragged Arrays
with Named Margins
gasanalyzer Import, Recompute and Analyze Data from
Portable Gas Analyzers
gaselect Genetic Algorithm (GA) for Variable Selection
from High-Dimensional Data
gasfluxes Greenhouse Gas Flux Calculation from Chamber
Measurements
gasmodel Generalized Autoregressive Score Models
gasper Graph Signal Processing
gaston Genetic Data Handling (QC, GRM, LD, PCA) &
Linear Mixed Models
gateR Flow/Mass Cytometry Gating via Spatial Kernel
Density Estimation
gatepoints Easily Gate or Select Points on a Scatter Plot
gatoRs Geographic and Taxonomic Occurrence R-Based
Scrubbing
gauseR Lotka-Volterra Models for Gause's 'Struggle for
Existence'
gaussDiff Difference Measures for Multivariate Gaussian
Probability Density Functions
gausscov The Gaussian Covariate Method for Variable
Selection
gaussfacts The Greatest Mathematician Since Antiquity
gaussplotR Fit, Predict and Plot 2D Gaussians
gaussquad Collection of Functions for Gaussian Quadrature
gaussratiovegind Distribution of Gaussian Ratios
gawdis Multi-Trait Dissimilarity with more Uniform
Contributions
gazepath Parse Eye-Tracking Data into Fixations
gbRd Utilities for Processing Rd Objects and Files
gbeta Generalized Beta and Beta Prime Distributions
gbfs Interface with Live Bikeshare Data
gbifdb High Performance Interface to 'GBIF'
gbm Generalized Boosted Regression Models
gbm.auto Automated Boosted Regression Tree Modelling and
Mapping Suite
gbm2sas Convert GBM Object Trees to SAS Code
gbm3 Generalized Boosted Regression Models
gbmt Group-Based Multivariate Trajectory Modeling
gbts Hyperparameter Search for Gradient Boosted
Trees
gbutils Utilities for Simulation, Plots, Quantile
Functions and Programming
gcKrig Analysis of Geostatistical Count Data using
Gaussian Copulas
gcTensor Generalized Coupled Tensor Factorization
gcatest Genotype Conditional Association TEST
gcbd 'GPU'/CPU Benchmarking in Debian-Based Systems
gcdnet The (Adaptive) LASSO and Elastic Net Penalized
Least Squares, Logistic Regression, Hybrid
Huberized Support Vector Machines, Squared
Hinge Loss Support Vector Machines and
Expectile Regression using a Fast Generalized
Coordinate Descent Algorithm
gcerisk Generalized Competing Event Model
gchartsmap Access 'Google Charts' Map Data
gcite Google Citation Parser
gclink Gene-Cluster Discovery, Annotation and
Visualization
gclm Graphical Continuous Lyapunov Models
gclus Clustering Graphics
gcmr Gaussian Copula Marginal Regression
gcomputation Causal Inference by using G-Computation
gconsensus Consensus Value Constructor
gcookbook Data for "R Graphics Cookbook"
gcor Generalized Correlation and Related Measures
gcpca Generalized Contrastive Principal Component
Analysis
gcplyr Wrangle and Analyze Growth Curve Data
gcrma Background Adjustment Using Sequence
Information
gctsc Gaussian and Student-t Copula Models for Count
Time Series
gcxgclab GCxGC Preprocessing and Analysis
gdalUtilities Wrappers for 'GDAL' Utilities Executables
gdalcubes Earth Observation Data Cubes from Satellite
Image Collections
gdalraster Bindings to 'GDAL'
gdata Various R Programming Tools for Data
Manipulation
gde GBIF Dataset Explorer
gdi Volumetric Analysis using Graphic Double
Integration
gdiff Graphical Difference Testing
gdim Estimate Graph Dimension using Cross-Validated
Eigenvalues
gdistance Distances and Routes on Geographical Grids
gdldata 'Global Data Lab' R API
gdm Generalized Dissimilarity Modeling
gdpc Generalized Dynamic Principal Components
gds Descriptive Statistics of Grouped Data
gdsfmt R Interface to CoreArray Genomic Data Structure
(GDS) Files
gdtools Font Metrics and Font Management Utilities for
R Graphics
gdverse Analysis of Spatial Stratified Heterogeneity
gdxdt IO for GAMS GDX Files using 'data.table'
gdxtools Manipulate 'GDX' Files
gear Geostatistical Analysis in R
geboes.score Evaluate the Geboes Score for Histology in
Ulcerative Colitis
gecko Geographical Ecology and Conservation Knowledge
Online
gedi2 Gene Expression Decomposition and Integration
gee Generalized Estimation Equation Solver
geeCRT Bias-Corrected GEE for Cluster Randomized
Trials
geeLite Building and Managing Local Databases from
'Google Earth Engine'
geeM Solve Generalized Estimating Equations
geeVerse A Comprehensive Analysis of High Dimensional
Longitudinal Data
geeasy Solve Generalized Estimating Equations for
Clustered Data
geecure Marginal Proportional Hazards Mixture Cure
Models with Generalized Estimating Equations
geepack Generalized Estimating Equation Package
geesmv Modified Variance Estimators for Generalized
Estimating Equations
geess Modified Generalized Estimating Equations for
Small-Sample Data
geessbin Modified Generalized Estimating Equations for
Binary Outcome
geex An API for M-Estimation
geigen Calculate Generalized Eigenvalues, the
Generalized Schur Decomposition and the
Generalized Singular Value Decomposition of a
Matrix Pair with Lapack
geiger Analysis of Evolutionary Diversification
gek Gradient-Enhanced Kriging
gellipsoid Generalized Ellipsoids
gelnet Generalized Elastic Nets
gemR General Effect Modelling
gemini.R Interface for 'Google Gemini' API
gemma2 GEMMA Multivariate Linear Mixed Model
gems Generalized Multistate Simulation Model
gemtc Network Meta-Analysis Using Bayesian Methods
gen2stage Generalized Two-Stage Designs for Phase II
Single-Arm Studies
gen3sis General Engine for Eco-Evolutionary Simulations
gen5helper Processing 'Gen5' 2.06 Exported Data
genBaRcode Analysis and Visualization Tools for Genetic
Barcode Data
genCountR Interacting with Roberts and Utych's (2019)
Gendered Language Dictionary
genMCMCDiag Generalized Convergence Diagnostics for
Difficult MCMC Algorithms
genSEIR Predict Epidemic Curves with Generalized SEIR
Modeling
genSurv Generating Multi-State Survival Data
genTS R Shiny App for Creating Simplified Trial
Summary (TS) Domain
gena Genetic Algorithm and Particle Swarm
Optimization
genalg R Based Genetic Algorithm
gencor Generate Customized Correlation Matrices
gendata Generate and Modify Synthetic Datasets
gender Predict Gender from Names Using Historical Data
genderBR Predict Gender from Brazilian First Names
genderapi Client for 'GenderAPI.io'
gendercoder Recodes Sex/Gender Descriptions into a Standard
Set
genderstat Quantitative Analysis Tools for Gender Studies
gendist Generated Probability Distribution Models
geneExpressionFromGEO Easily Downloads a Gene Expression Dataset from
a GEO Code and Retrieves the Gene Symbols of
Its Probesets
geneHummus A Pipeline to Define Gene Families in Legumes
and Beyond
geneNR Automated Gene Identification for Post-GWAS and
QTL Analysis
genefilter genefilter: methods for filtering genes from
high-throughput experiments
genefindr Rapid Gene Characterization Using Public
Genomic Databases
genekitr Gene Analysis Toolkit
genemodel Gene Model Plotting in R
genepi Genetic Epidemiology Design and Inference
genepop Population Genetic Data Analysis Using Genepop
generalCorr Generalized Correlations, Causal Paths and
Portfolio Selection
generalRSS Statistical Tools for Balanced and Unbalanced
Ranked Set Sampling
generalhoslem Goodness of Fit Tests for Logistic Regression
Models
generator Generate Data Containing Fake Personally
Identifiable Information
generics Common S3 Generics not Provided by Base R
Methods Related to Model Fitting
geneset Get Gene Sets for Gene Enrichment Analysis
genesysr Genesys PGR Client
genetic.algo.optimizeR
Genetic Algorithm Optimization
geneticae Statistical Tools for the Analysis of Multi
Environment Agronomic Trials
genetics Population Genetics
geneviewer Gene Cluster Visualizations
genfrn Generating Triangular and Trapezoidal Fuzzy
Random Numbers via Uniform Distribution
genie Fast, Robust, and Outlier Resistant
Hierarchical Clustering
genieBPC Project GENIE BioPharma Collaborative Data
Processing Pipeline
genieclust Genie: Fast and Robust Hierarchical Clustering
genio Genetics Input/Output Functions
geniusr Tools for Working with the 'Genius' API
genlasso Path Algorithm for Generalized Lasso Problems
genlogis Generalized Logistic Distribution
geno2proteo Finding the DNA and Protein Sequences of Any
Genomic or Proteomic Loci
genoPlotR Plot Publication-Grade Gene and Genome Maps
genodds Generalised Odds Ratios
genomic.autocorr Models Dealing with Spatial Dependency in
Genomic Data
genomicper Circular Genomic Permutation using Genome Wide
Association p-Values
genpathmox Pathmox Approach Segmentation Tree Analysis
genproc Robust, Logged and Reproducible Iteration at
Organizational Scale
genridge Generalized Ridge Trace Plots for Ridge
Regression
genscore Generalized Score Matching Estimators
genset Generates Multiple Data Sets
gensphere Generalized Spherical Distributions
genstab Resampling Based Yield Stability Analyses
gensvm A Generalized Multiclass Support Vector Machine
gentransmuted Estimation and Other Tools for Generalized
Transmuted Models
geoAr Argentina's Spatial Data Toolbox
geoBayes Analysis of Geostatistical Data using Bayes and
Empirical Bayes Methods
geoDeltaAudit Quantifying Variable Change Induced by
Administrative Boundary Transformations
geoGAM Select Sparse Geoadditive Models for Spatial
Prediction
geoR Analysis of Geostatistical Data
geoSAE Geoadditive Small Area Model
geoTS Methods for Handling and Analyzing Time Series
of Satellite Images
geoarrow Extension Types for Spatial Data for Use with
'Arrow'
geoarrowWidget Attach '(Geo)Arrow' and/or '(Geo)Parquet' Data
to a Widget
geobounds Download Administrative Boundary Data from
'geoBoundaries'
geobr Download Official Spatial Data Sets of Brazil
geocacheR Tools for Geocaching
geocausal Causal Inference with Spatio-Temporal Data
geocmeans Implementing Methods for Spatial Fuzzy
Unsupervised Classification
geocodebr Geolocalização De Endereços Brasileiros
(Geocoding Brazilian Addresses)
geocomplexity Mitigating Spatial Bias Through Geographical
Complexity
geodaData Spatial Analysis Datasets for Teaching
geodata Access Geographic Data
geodetector Stratified Heterogeneity Measure, Dominant
Driving Force Detection, Interaction
Relationship Investigation
geodimension Definition of Geographic Dimensions
geodist Fast, Dependency-Free Geodesic Distance
Calculations
geodiv Methods for Calculating Gradient Surface
Metrics
geodrawr Making Geospatial Objects
geoelectrics 3D-Visualization of Geoelectric Resistivity
Measurement Profiles
geofacet 'ggplot2' Faceting Utilities for Geographical
Data
geofi Access Finnish Geospatial Data
geoflow Orchestrate Geospatial (Meta)Data Management
Workflows and Manage FAIR Services
geogenr Generator from American Community Survey
Geodatabases
geographiclib Access to 'GeographicLib'
geogrid Turn Geospatial Polygons into Regular or
Hexagonal Grids
geohabnet Geographical Risk Analysis Based on Habitat
Connectivity
geohashTools Tools for Working with Geohashes
geoheatmap Create Geospatial Cartogram Heatmaps
geojson Classes for 'GeoJSON'
geojsonR A GeoJson Processing Toolkit
geojsonio Convert Data from and to 'GeoJSON' or
'TopoJSON'
geojsonsf GeoJSON to Simple Feature Converter
geomander Geographic Tools for Studying Gerrymandering
geomapdata Data for Topographic and Geologic Mapping
geomaroc Easily Visualize Geographic Data of Morocco
geomerge Geospatial Data Integration
geometa Tools for Reading and Writing ISO/OGC
Geographic Metadata
geometries Convert Between R Objects and Geometric
Structures
geometry Mesh Generation and Surface Tessellation
geommc Geometric Markov Chain Sampling
geomod A Computer Program for Geotechnical
Investigations
geomorph Geometric Morphometric Analyses of 2D and 3D
Landmark Data
geomtextpath Curved Text in 'ggplot2'
geomultistar Multidimensional Queries Enriched with
Geographic Data
geonames Interface to the "Geonames" Spatial Query Web
Service
geonapi 'GeoNetwork' API R Interface
geonetwork Geographic Networks
geonode4R Interface to 'GeoNode' REST API
geonuts Identification and Visualisation of European
NUTS Regions from Geolocations
geoperu Download Spatial Datasets of Peru
geoprofiler Perpendicular Line Transects for Geosciences
geopsych Methods of Applied Psychology and Psychometrics
in Geographical Analysis
georefdatar Geosciences Reference Datasets
georob Robust Geostatistical Analysis of Spatial Data
geos Open Source Geometry Engine ('GEOS') R API
geosapi GeoServer REST API R Interface
geoscale Geological Time Scale Plotting
geosimilarity Geographically Optimal Similarity
geospark Bring Local Sf to Spark
geospatialsuite Comprehensive Geospatiotemporal Analysis and
Multimodal Integration Toolkit
geosphere Spherical Trigonometry
geospt Geostatistical Analysis and Design of Optimal
Spatial Sampling Networks
geosptdb Spatio-Temporal Radial Basis Functions with
Distance-Based Methods (Optimization,
Prediction and Cross Validation)
geostats An Introduction to Statistics for Geoscientists
geostatsp Geostatistical Modelling with Likelihood and
Bayes
geotargets 'targets' Extensions for Geographic Spatial
Formats
geotools Geo tools
geotoolsR Tools to Improve the Use of Geostatistic
geotopbricks An R Plug-in for the Distributed Hydrological
Model GEOtop
geovol Geopolitical Volatility (GEOVOL) Modelling
geozoo Zoo of Geometric Objects
gepaf Google Encoded Polyline Algorithm Format
geppe Generalised Exponential Poisson and Poisson
Exponential Distributions
gerbil Generalized Efficient Regression-Based
Imputation with Latent Processes
gerda German Election Database (GERDA)
gerefer Preparer of Main Scientific References for
Automatic Insertion in Academic Papers
germinationmetrics Seed Germination Indices and Curve Fitting
gert Simple Git Client for R
gesca Generalized Structured Component Analysis
Structural Equation Modeling
gesisdata Reproducible Data Retrieval from the GESIS Data
Archive
geslaR Get and Manipulate the GESLA Dataset
gestalt Tools for Making and Combining Functions
gestate Generalised Survival Trial Assessment Tool
Environment
getCRUCLdata 'CRU' 'CL' v. 2.0 Climatology Client
getDTeval Translating Coding Statements using get() and
eval() for Improved Run-Time Coding Efficiency
getLattes Import and Process Data from the 'Lattes'
Curriculum Platform
getPass Masked User Input
getProxy Get Free Proxy IP and Port
getRad Download Radar Data for Biological Research
getable Fetching Tabular Data "Onload" in Compiled R
Markdown HTML Documents
getip 'IP' Address 'Lookup'
getmstatistic Quantifying Systematic Heterogeneity in
Meta-Analysis
getopt C-Like 'getopt' Behavior
gets General-to-Specific (GETS) Modelling and
Indicator Saturation Methods
getspanel General-to-Specific Modelling of Panel Data
getspres SPRE Statistics for Exploring Heterogeneity in
Meta-Analysis
gettz Get the Timezone Information
getwiki R Wrapper for Wikipedia Data
gexp Generator of Experiments
geysertimes Geyser Data from GeyserTimes.org
gfboost Gradient-Free Gradient Boosting
gfer Green Finance and Environmental Risk
gfiUltra Generalized Fiducial Inference for
Ultrahigh-Dimensional Regression
gfoRmula Parametric G-Formula
gfoRmulaICE Parametric Iterative Conditional Expectation
G-Formula
gfonts Offline 'Google' Fonts for 'Markdown' and
'Shiny'
gfunctions G-Functions
gg.gap Define Segments in y-Axis for 'ggplot2'
gg1d Exploratory Data Analysis using Tiled
One-Dimensional Graphics
ggBubbles Mini Bubble Plots for Comparison of Discrete
Data with 'ggplot2'
ggChernoff Chernoff Faces for 'ggplot2'
ggDNAvis 'ggplot2'-Based Tools for Visualising DNA
Sequences and Modifications
ggDoE Modern Graphs for Design of Experiments with
'ggplot2'
ggDoubleHeat A Heatmap-Like Visualization Tool
ggEDA Turnkey Visualisations for Exploratory Data
Analysis
ggExametrika Visualization of 'exametrika' Output Using
'ggplot2'
ggExtra Add Marginal Histograms to 'ggplot2', and More
'ggplot2' Enhancements
ggFishPlots Visualise and Calculate Life History Parameters
for Fisheries Science using 'ggplot2'
ggHoriPlot Horizon Plots for 'ggplot2'
ggInterval Visualizing Interval-Valued Data Using
'ggplot2'
ggOceanMaps Plot Data on Oceanographic Maps using 'ggplot2'
ggPMX 'ggplot2' Based Tool to Facilitate Diagnostic
Plots for NLME Models
ggQQunif Compare Big Datasets to the Uniform
Distribution
ggRandomForests Visually Exploring Random Forests
ggRtsy Add Some Van Gogh Colors and Overlay Colors on
Your 'ggplot()'
ggScatRidges Scatter Plot Combined with Ridgelines in
'ggplot2'
ggThemeAssist Add-in to Customize 'ggplot2' Themes
ggVennDiagram A 'ggplot2' Implement of Venn Diagram
ggWebGL Browser-Native 'WebGL' Rendering for R Graphics
ggalign A 'ggplot2' Extension for Composable
Visualization
ggaligner Visualizing Sequence Alignment by Generating
Publication-Ready Plots
ggalignment Plots 'D&D'-Style Alignment Charts
ggallin Grab Bag of 'ggplot2' Functions
ggalluvial Alluvial Plots in 'ggplot2'
ggamma Generalized Gamma Probability Distribution
gganimate A Grammar of Animated Graphics
ggarchery Flexible Segment Geoms with Arrows for
'ggplot2'
ggarrow Arrows for 'ggplot2'
ggauto Automatically Create and Style 'ggplot2' Charts
ggautomap Create Maps from a Column of Place Names
ggbeeswarm Categorical Scatter (Violin Point) Plots
ggbio Visualization tools for genomic data
ggbiplot A Grammar of Graphics Implementation of Biplots
ggblanket Publication-Quality 'ggplot2' Visualisation
ggblend Blending and Compositing Algebra for 'ggplot2'
ggborderline Line Plots that Pop
ggbrace Curly Braces for 'ggplot2'
ggbrain Create Images of Volumetric Brain Data in NIfTI
Format Using 'ggplot2' Syntax
ggbreak Set Axis Break for 'ggplot2'
ggbrick Waffle Style Chart with a Brick Layout in
'ggplot2'
ggbuildr Save Incremental Builds of Plots
ggchangepoint Combines Changepoint Analysis with 'ggplot2'
ggcharts Shorten the Distance from Data Visualization
Idea to Actual Plot
ggchord Multi-Sequence 'BLAST' Alignment Chord Diagram
Visualization Tool
ggcircular A 'ggplot2' Extension for Circular and
Directional Data
ggcleveland Implementation of Plots from Cleveland's
Visualizing Data Book
ggcompare Mean Comparison in 'ggplot2'
ggcorrheatmap Make Flexible 'ggplot2' Correlation Heatmaps
ggcorrplot Visualization of a Correlation Matrix using
'ggplot2'
ggcube 3D Plotting with 'ggplot2'
ggdag Analyze and Create Elegant Directed Acyclic
Graphs
ggdaynight Add Day/Night Patterns to 'ggplot2' Plots
ggdemetra 'ggplot2' Extension for Seasonal and Trading
Day Adjustment with 'RJDemetra'
ggdendro Create Dendrograms and Tree Diagrams Using
'ggplot2'
ggdensity Interpretable Bivariate Density Visualization
with 'ggplot2'
ggdiagram Object-Oriented Diagram Plots with 'ggplot2'
ggdibbler Add Uncertainty to Data Visualisations
ggdiceplot DicePlot Visualization for 'ggplot2'
ggdist Visualizations of Distributions and Uncertainty
ggdmc Cognitive Models
ggdmcHeaders 'C++' Headers for 'ggdmc' Package
ggdmcLikelihood Likelihood Computation for 'ggdmc' Package
ggdmcModel Model Builders for 'ggdmc' Package
ggdmcPrior Prior Probability Functions of the Standard and
Truncated Distribution
gge Genotype Plus Genotype-by-Environment Biplots
ggeasy Easy Access to 'ggplot2' Commands
ggeffects Create Tidy Data Frames of Marginal Effects for
'ggplot' from Model Outputs
ggenealogy Visualization Tools for Genealogical Data
ggerror Extended Error Geoms for 'ggplot2'
ggetho Visualisation of High-Throughput Behavioural
(i.e. Ethomics) Data
ggfacto Graphs for Correspondence Analysis
ggfields Add Vector Field Layers to Ggplots
ggfigdone Manage & Modify 'ggplot' Figures using
'ggfigdone'
ggfittext Fit Text Inside a Box in 'ggplot2'
ggfixest Dedicated 'ggplot2' Methods for 'fixest'
Objects
ggflowchart Flowcharts with 'ggplot2'
ggfocus Scales that Focus Specific Levels in your
ggplot()
ggfootball Plotting Football Matches Expected Goals (xG)
Stats with 'Understat' Data
ggforce Accelerating 'ggplot2'
ggforestplotR Publication-Ready Forest Plots with 'ggplot2'
ggformula Formula Interface to the Grammar of Graphics
ggfortify Data Visualization Tools for Statistical
Analysis Results
ggfoundry Shape Foundry & Geom for 'ggplot2'
ggfun Miscellaneous Functions for 'ggplot2'
ggfx Pixel Filters for 'ggplot2' and 'grid'
gggap Streamlined Creation of Segments on the Y-Axis
of 'ggplot2' Plots
gggda A 'ggplot2' Extension for Geometric Data
Analysis
gggenes Draw Gene Arrow Maps in 'ggplot2'
gggenomes A Grammar of Graphics for Comparative Genomics
ggghost Capture the Spirit of Your 'ggplot2' Calls
gggibbous Moon Charts, a Pie Chart Alternative
gggrid Draw with 'grid' in 'ggplot2'
ggguides Simplified Legend and Guide Alignment for
'ggplot2'
ggh4x Hacks for 'ggplot2'
gghalfnorm Create a Half Normal Plot Using 'ggplot2'
gghdx HDX Theme, Scales, and Other Conveniences for
'ggplot2'
gghexsize Make Hexagonal Heatmaps with Varying Hexagon
Sizes
gghighlight Highlight Lines and Points in 'ggplot2'
gghinton Hinton Diagrams for 'ggplot2'
gghist Plot the Histogram of a Numeric Vector
gghourglass Plot Records per Time of Day
ggimage Use Image in 'ggplot2'
ggimg Graphics Layers for Plotting Image Data with
'ggplot2'
ggincerta Extend 'ggplot2' with Layers and Scales for
Spatial Uncertainty Visualization
gginference Visualise the Results of Inferential Statistics
using 'ggplot2'
gginnards Explore the Innards of 'ggplot2' Objects
ggip Data Visualization for IP Addresses and
Networks
ggiraph Make 'ggplot2' Graphics Interactive
ggiraphExtra Make Interactive 'ggplot2'. Extension to
'ggplot2' and 'ggiraph'
ggisotonic 'ggplot2' Friendly Isotonic or Monotonic
Regression Curves
ggkegg Analyzing and visualizing KEGG information
using the grammar of graphics
gglasso Group Lasso Penalized Learning Using a Unified
BMD Algorithm
gglgbtq Show Pride on 'ggplot2' Plots
gglinedensity Make DenseLines Heatmaps with 'ggplot2'
gglm Grammar of Graphics for Linear Model Diagnostic
Plots
gglogger Track 'ggplot2' Calls
gglorenz Plotting Lorenz Curve with the Blessing of
'ggplot2'
gglycan Plot Glycans using 'ggplot2'
gglyph Network-Style Visualization of Directed
Pairwise Relationships
ggm Graphical Markov Models with Mixed Graphs
ggmRSCU Visualizing Multi-Species Relative Synonymous
Codon Usage and Extensible Data Exploration
ggmap Spatial Visualization with ggplot2
ggmapcn Customizable China and Global Map
Visualizations
ggmapinset Add Inset Panels to Maps
ggmatplot Plot Columns of Two Matrices Against Each Other
Using 'ggplot2'
ggmcmc Tools for Analyzing MCMC Simulations from
Bayesian Inference
ggmemo Add Arrows, Labels, and Change Annotations to
'ggplot2' Charts
ggmice Visualizations for 'mice' with 'ggplot2'
ggmix Variable Selection in Linear Mixed Models for
SNP Data
ggmlR 'GGML' Tensor Operations for Machine Learning
ggmr Generalized Gauss Markov Regression
ggmsa Plot Multiple Sequence Alignment using
'ggplot2'
ggmugs Visualization of Multiple Genome-Wide
Association Study Summary Statistics
ggmuller Create Muller Plots of Evolutionary Dynamics
ggmulti High Dimensional Data Visualization
ggnetwork Geometries to Plot Networks with 'ggplot2'
ggnewscale Multiple Fill and Colour Scales in 'ggplot2'
ggnormalviolin A 'ggplot2' Extension to Make Normal Violin
Plots
ggokabeito 'Okabe-Ito' Scales for 'ggplot2' and 'ggraph'
ggordiplots Make 'ggplot2' Versions of Vegan's Ordiplots
ggpackets Package Plot Layers for Easier Portability and
Modularization
ggpage Creates Page Layout Visualizations
ggparty 'ggplot' Visualizations for the 'partykit'
Package
ggpath Robust Image Rendering Support for 'ggplot2'
ggpattern 'ggplot2' Pattern Geoms
ggpca Publication-Ready PCA, t-SNE, and UMAP Plots
ggpcp Parallel Coordinate Plots in the 'ggplot2'
Framework
ggpedigree Visualizing Pedigrees with 'ggplot2' and
'plotly'
ggperiodic Easy Plotting of Periodic Data with 'ggplot2'
ggpicrust2 Make 'PICRUSt2' Output Analysis and
Visualization Easier
ggplate Create Layout Plots of Biological Culture
Plates and Microplates
ggplayfair Geoms for Playfair-Style Charts
ggplot.multistats Multiple Summary Statistics for Binned
Stats/Geometries
ggplot2 Create Elegant Data Visualisations Using the
Grammar of Graphics
ggplot2.utils Selected Utilities Extending 'ggplot2'
ggplot2movies Movies Data
ggplotAssist 'RStudio' Addin for Teaching and Learning
'ggplot2'
ggplotgui Create Ggplots via a Graphical User Interface
ggplotify Convert Plot to 'grob' or 'ggplot' Object
ggplotplus Universal Design-Oriented Enhancements for
'ggplot2'
ggpmisc Miscellaneous Extensions to 'ggplot2'
ggpointdensity A Cross Between a 2D Density Plot and a Scatter
Plot
ggpointless Extra Geometries and Stats for 'ggplot2'
ggpolar Dots and Their Connections in Polar Coordinate
System
ggpolypath Polygons with Holes for the Grammar of Graphics
ggpop Icon-Based Population Charts and Plots for
'ggplot2'
ggpp Grammar Extensions to 'ggplot2'
ggprism A 'ggplot2' Extension Inspired by 'GraphPad
Prism'
ggpubr 'ggplot2' Based Publication Ready Plots
ggpval Annotate Statistical Tests for 'ggplot2'
ggquickeda Quickly Explore Your Data Using 'ggplot2' and
'table1' Summary Tables
ggquiver Quiver Plots for 'ggplot2'
ggragged Ragged Grids for 'ggplot2'
ggrain A Rainclouds Geom for 'ggplot2'
ggraph An Implementation of Grammar of Graphics for
Graphs and Networks
ggraptR Allows Interactive Visualization of Data
Through a Web Browser GUI
ggrastr Rasterize Layers for 'ggplot2'
ggrcs Draw Histograms and Restricted Cubic Splines
(RCS)
ggrecipes Recipes for Data Visualization
ggredist Scales, Geometries, and Extensions of 'ggplot2'
for Election Mapping
ggrefine Publication-Quality 'ggplot2' Themes
ggrepel Automatically Position Non-Overlapping Text
Labels with 'ggplot2'
ggreveal Reveal a 'ggplot' Incrementally
ggridges Ridgeline Plots in 'ggplot2'
ggrisk Risk Score Plot for Cox Regression
ggrounded Rounded Bar Plots
ggroups Pedigree and Genetic Groups
ggsankeyfier Create Sankey and Alluvial Diagrams Using
'ggplot2'
ggsced Utilities and Helpers for Single Case
Experimental Design (SCED) using 'ggplot2'
ggsci Scientific Journal and Sci-Fi Themed Color
Palettes for 'ggplot2'
ggscidca Plotting Decision Curve Analysis with Coloured
Bars
ggscribe Publication-Quality 'ggplot2' Annotation
ggseg Plotting Tool for Brain Atlases
ggseg.formats Brain Atlas Data Structures for the 'ggseg'
Ecosystem
ggseg.meshes Additional Brain Surface Meshes for the
'ggsegverse' Ecosystem
ggseg3d Interactive 3D Brain Atlas Visualization
ggsegmentedtotalbar Create a Segmented Total Bar Plot with Custom
Annotations and Labels
ggsem Interactive Structural Equation Modeling (SEM)
and Multi-Group Path Diagrams
ggseqlogo A 'ggplot2' Extension for Drawing
Publication-Ready Sequence Logos
ggseqplot Render Sequence Plots using 'ggplot2'
ggshadow Shadow and Glow Geoms for 'ggplot2'
ggside Side Grammar Graphics
ggsignif Significance Brackets for 'ggplot2'
ggskewboxplots Skew Boxplot Geoms for 'ggplot2'
ggsky Galactic and Equatorial Coordinate
Implementation for 'ggplot2'
ggsmc Visualising Output from Sequential Monte Carlo
and Ensemble-Based Methods
ggsoccer Plot Soccer Event Data
ggsolvencyii A 'ggplot2'-Plot of Composition of Solvency II
SCR: SF and IM
ggsom New Data Visualisations for SOMs Networks
ggspark 'ggplot2' Functions to Create Tufte Style
Sparklines
ggspatial Spatial Data Framework for ggplot2
ggspec Extract and Compare 'ggplot2' Plot
Specifications as Tidy Data Frames
ggspectra Extensions to 'ggplot2' for Radiation Spectra
ggsql Grammar of Graphics for SQL
ggstackplot Create Overlapping Stacked Plots
ggstance Horizontal 'ggplot2' Components
ggstar Multiple Geometric Shape Point Layer for
'ggplot2'
ggstats Extension to 'ggplot2' for Plotting Stats
ggstatsplot 'ggplot2' Based Plots with Statistical Details
ggstudent Continuous Confidence Interval Plots using
t-Distribution
ggsurveillance Tools for Outbreak Investigation/Infectious
Disease Surveillance
ggsurvey Simplifying 'ggplot2' for Survey Data
ggsurvfit Flexible Time-to-Event Figures
ggswissmaps Offers Various Swiss Maps as Data Frames and
'ggplot2' Objects
ggtangle Draw Network with Data
ggtea Palettes and Themes for 'ggplot2'
ggtern An Extension to 'ggplot2', for the Creation of
Ternary Diagrams
ggtext Improved Text Rendering Support for 'ggplot2'
ggthemeUL A 'ggplot' Theme for University of Ljubljana
ggthemes Extra Themes, Scales and Geoms for 'ggplot2'
ggtibble Create Tibbles and Lists of 'ggplot' Figures
for Reporting
ggtikz Post-Process 'ggplot2' Plots with 'TikZ' Code
Using Plot Coordinates
ggtime Grammar of Graphics and Plot Helpers for Time
Series Visualization
ggtrace Trace and Highlight Groups of Data Points
ggtranslate A 'ggplot2' Extension for Translating Plot Text
ggtree an R package for visualization of tree and
annotation data
ggtreeExtra An R Package To Add Geometric Layers On
Circular Or Other Layout Tree Of "ggtree"
ggtreebar Make Treemap Bar Charts with 'ggplot2'
ggtrendline Add Trendline and Confidence Interval to
'ggplot'
ggtricks Create Sector and Other Charts Easily Using
Grammar of Graphics
ggupset Combination Matrix Axis for 'ggplot2' to Create
'UpSet' Plots
ggvariant Tidy, 'ggplot2'-Native Visualization for
Genomic Variants
ggvegan 'ggplot2' Plots for the 'vegan' Package
ggvenn Draw Venn Diagram by 'ggplot2'
ggversa Conjuntos de Datos para 'Graficas Versatiles
con ggplot2'
ggvfields Vector Field Visualizations with 'ggplot2'
ggview 'ggplot2' Picture Previewer
ggvis Interactive Grammar of Graphics
ggvolc Create Volcano Plots for Differential Gene
Expression Data
ggvolcano Publication-Ready Volcano Plots
ggwidth Publication-Quality 'ggplot2' Geom Width
ggwordcloud A Word Cloud Geom for 'ggplot2'
ggx A Natural Language Interface to 'ggplot2'
gh 'GitHub' 'API'
ghapps Authenticate as a 'GitHub' App
ghclass Tools for Managing Classes on GitHub
ghcm Functional Conditional Independence Testing
with the GHCM
ghibli Studio Ghibli Colour Palettes
ghql General Purpose 'GraphQL' Client
ghyp Generalized Hyperbolic Distribution and Its
Special Cases
ghypernet Fit and Simulate Generalised Hypergeometric
Ensembles of Graphs
gibasa An Alternative 'Rcpp' Wrapper of 'MeCab'
gibble Geometry Decomposition
gicf Penalised Likelihood Estimation of a Covariance
Matrix
gie API Wrapper for the Natural Gas Transparency
Platforms of Gas Infrastructure Europe
gif Graphical Independence Filtering
gifski Highest Quality GIF Encoder
gifti Reads in 'Neuroimaging' 'GIFTI' Files with
Geometry Information
gigg Group Inverse-Gamma Gamma Shrinkage for Sparse
Regression with Grouping Structure
gilmour The Interpretation of Adjusted Cp Statistic
gim Generalized Integration Model
gimap Calculate Genetic Interactions for Paired
CRISPR Targets
gimme Group Iterative Multiple Model Estimation
gimms Download and Process GIMMS NDVI3g Data
giniCI Gini-Based Composite Indicators
giniVarCI Gini Indices, Variances and Confidence
Intervals for Finite and Infinite Populations
ginormal Generalized Inverse Normal Distribution Density
and Generation
gips Gaussian Model Invariant by Permutation
Symmetry
gipsDA Training DA Models Utilizing 'gips'
giscoR Download 'Eurostat' 'GISCO' Spatial Data
gistr Work with 'GitHub' 'Gists'
git2r Provides Access to Git Repositories
git2rdata Store and Retrieve Data.frames in a Git
Repository
git4r Interactive Git for R
gitcreds Query 'git' Credentials from 'R'
gitdown Turn Your Git Commit Messages into a HTML Book
gitear Client to the 'gitea' API
githubr Easier to Use API Wrapper for 'GitHub'
gitignore Create Useful .gitignore Files for your Project
gitlabr Access to the 'GitLab' API
gitr A Lightweight API for 'Git'
gittargets Data Version Control for the Targets Package
givitiR The GiViTI Calibration Test and Belt
gjam Generalized Joint Attribute Modeling
gk g-and-k and g-and-h Distribution Functions
gkgraphR Accessing the Official 'Google Knowledge Graph'
API
gkmSVM Gapped-Kmer Support Vector Machine
gkrreg Gaussian Kernel Robust Regression (GKRReg)
gkwdist Generalized Kumaraswamy Distribution Family
gkwreg Generalized Kumaraswamy Regression Models for
Bounded Data
glam Generalized Additive and Linear Models (GLAM)
glarma Generalized Linear Autoregressive Moving
Average Models
glassdoor Interface to 'Glassdoor' API
glasso Graphical Lasso: Estimation of Gaussian
Graphical Models
glassoFast Fast Graphical LASSO
glasstabs Animated Glass-Style Tabs and Multi-Select
Filter for 'Shiny'
glba General Linear Ballistic Accumulator Models
glca An R Package for Multiple-Group Latent Class
Analysis
glcm Calculate Textures from Grey-Level
Co-Occurrence Matrices (GLCMs)
gld Estimation and Use of the Generalised (Tukey)
Lambda Distribution
gldrm Generalized Linear Density Ratio Models
gleam Global Livestock Environmental Assessment Model
(GLEAM-X)
glinternet Learning Interactions via Hierarchical
Group-Lasso Regularization
glinvci Phylogenetic Comparative Methods with
Uncertainty Estimates
glioblastomaEHRsData Descriptive Analysis on Three Glioblastoma EHRs
Datasets
gllm Generalised log-Linear Model
gllvm Generalized Linear Latent Variable Models
glm.deploy 'C' and 'Java' Source Code Generator for Fitted
Glm Objects
glm.predict Predicted Values and Discrete Changes for
Regression Models
glm2 Fitting Generalized Linear Models
glm4 Fitting Generalized Linear Models Using Sparse
Matrices
glmGamPoi Fit a Gamma-Poisson Generalized Linear Model
glmMisrep Generalized Linear Models Adjusting for
Misrepresentation
glmSTARMA (Double) Generalized Linear Models for
Spatio-Temporal Data
glmSparseNet Network Centrality Metrics for Elastic-Net
Regularized Models
glmbayes Bayesian Generalized Linear Models (IID
Samples)
glmbb All Hierarchical or Graphical Models for
Generalized Linear Model
glmc Fitting Generalized Linear Models Subject to
Constraints
glme Generalized Linear Mixed Effects Models
glmertree Generalized Linear Mixed Model Trees
glmfitmiss Fitting GLMs with Missing Data in Both
Responses and Covariates
glmlep Fit GLM with LEP-Based Penalized Maximum
Likelihood
glmm Generalized Linear Mixed Models via Monte Carlo
Likelihood Approximation
glmm.hp Hierarchical Partitioning of Marginal R2 for
Generalized Mixed-Effect Models
glmmEP Generalized Linear Mixed Model Analysis via
Expectation Propagation
glmmFEL Generalized Linear Mixed Models via Fully
Exponential Laplace in EM
glmmLasso Variable Selection for Generalized Linear Mixed
Models by L1-Penalized Estimation
glmmML Generalized Linear Models with Clustering
glmmPen High Dimensional Penalized Generalized Linear
Mixed Models (pGLMM)
glmmSeq General Linear Mixed Models for Gene-Level
Differential Expression
glmmTMB Generalized Linear Mixed Models using Template
Model Builder
glmmrBase Monte Carlo Maximum Likelihood and Analysis of
Generalised Linear Mixed Models
glmmrOptim Approximate Optimal Experimental Designs Using
Generalised Linear Mixed Models
glmmsel Generalised Linear Mixed Model Selection
glmnet Lasso and Elastic-Net Regularized Generalized
Linear Models
glmnetSE Add Nonparametric Bootstrap SE to 'glmnet' for
Selected Coefficients (No Shrinkage)
glmnetUtils Utilities for 'Glmnet'
glmnetcr Fit a Penalized Constrained Continuation Ratio
Model for Predicting an Ordinal Response
glmnetr Nested Cross Validation for the Relaxed Lasso
and Other Machine Learning Models
glmpath L1 Regularization Path for Generalized Linear
Models and Cox Proportional Hazards Model
glmpathcr Fit a Penalized Continuation Ratio Model for
Predicting an Ordinal Response
glmpca Dimension Reduction of Non-Normally Distributed
Data
glmpermu Permutation-Based Inference for Generalized
Linear Models
glmtlp Generalized Linear Models with Truncated Lasso
Penalty
glmtoolbox Set of Tools to Data Analysis using Generalized
Linear Models
glmtrans Transfer Learning under Regularized Generalized
Linear Models
glmulti Model Selection and Multimodel Inference Made
Easy
glmvsd Variable Selection Deviation Measures and
Instability Tests for High-Dimensional
Generalized Linear Models
glmx Generalized Linear Models Extended
glmxdiag A Collection of Graphic Tools for GLM
Diagnostics and some Extensions
gloBFPr Access Global Building Height Datasets
globalKinhom Inhomogeneous K- And Pair Correlation Functions
Using Global Estimators
globalOptTests Objective functions for benchmarking the
performance of global optimization algorithms
globals Identify Global Objects in R Expressions
globaltest Testing Groups of Covariates/Features for
Association with a Response Variable, with
Applications to Gene Set Testing
globaltrends Download and Measure Global Trends Through
Google Search Volumes
globe Plot 2D and 3D Views of the Earth, Including
Major Coastline
glober Estimating Functions with Multivariate
B-Splines
globpso Swarm Intelligence Optimization
glogis Fitting and Testing Generalized Logistic
Distributions
glorenz Transformed and Relative Lorenz Curves for
Survey Weighted Data
glossa User-Friendly 'shiny' App for Bayesian Species
Distribution Models
glossary Glossaries for Markdown and Quarto Documents
glossr Use Interlinear Glosses in R Markdown
glow Make Plots that Glow
glscalibrator Automated Calibration and Analysis of 'GLS'
(Global Location Sensor) Data
glsm Saturated Model Log-Likelihood for Multinomial
Outcomes
glue Interpreted String Literals
glueDo Wrapper Functions for the 'glue' Library
gluedown Wrap Vectors in Markdown Formatting
gluvarpro Glucose Variability Measures from Continuous
Glucose Monitoring Data
glvmfit Methods to Assess Generalized Latent Variable
Model Fit
glyparse Parsing Glycan Structure Text Representations
glyrepr Representation for Glycan Compositions and
Structures
gm Create Music with Ease
gmDatabase Accessing a Geometallurgical Database with R
gmGeostats Geostatistics for Compositional Analysis
gmailr Access the 'Gmail' 'RESTful' API
gmapsdistance Distance and Travel Time Between Two Points
from Google Maps
gmfamm Generalized Multivariate Functional Additive
Models
gmfd Inference and Clustering of Functional Data
gmgm Gaussian Mixture Graphical Model Learning and
Inference
gmm Generalized Method of Moments and Generalized
Empirical Likelihood
gmmsslm Semi-Supervised Gaussian Mixture Model with a
Missing-Data Mechanism
gmnl Multinomial Logit Models with Random Parameters
gmoTree Get and Modify 'oTree' Data
gmodels Various R Programming Tools for Model Fitting
gmp Multiple Precision Arithmetic
gmpoly Multivariate Polynomials with Rational
Coefficients
gmresls Solve Least Squares with GMRES(k)
gms 'GAMS' Modularization Support Package
gmt Interface Between GMT Map-Making Software and R
gmtFD General Multiple Tests for Univariate and
Multivariate Functional Data
gmvarkit Estimate Gaussian and Student's t Mixture
Vector Autoregressive Models
gmvjoint Joint Models of Survival and Multivariate
Longitudinal Data
gmwmx Estimate Functional and Stochastic Parameters
of Linear Models with Correlated Residuals
gmwmx2 Estimate Functional and Stochastic Parameters
of Linear Models with Correlated Residuals and
Missing Data
gnFit Goodness of Fit Test for Continuous
Distribution Functions
gnlm Generalized Nonlinear Regression Models
gnm Generalized Nonlinear Models
gnn Generative Neural Networks
gnomonicM Estimate Natural Mortality for Different Life
Stages
gnonadd Various Non-Additive Models for Genetic
Associations
gnorm Generalized Normal/Exponential Power
Distribution
gnrprod Estimates Gross Output Functions
gnumeric Read Data from Files Readable by 'gnumeric'
go2bigq Convert Large Numbers to Bigq Format
goalp Weighted and Lexicographic Goal Programming
Interface
goat Gene Set Analysis Using the Gene Set Ordinal
Association Test
godley Stock-Flow-Consistent Model Simulator
goeveg Functions for Community Data and Ordinations
gofCopula Goodness-of-Fit Tests for Copulae
gofIG Goodness-of-Fit Tests for the Inverse Gaussian
Distribution
gofar Generalized Co-Sparse Factor Regression
gofcat Goodness-of-Fit Measures for Categorical
Response Models
gofedf Goodness of Fit Tests Based on Empirical
Distribution Functions
goffda Goodness-of-Fit Tests for Functional Data
gofgamma Goodness-of-Fit Tests for the Gamma
Distribution
gofigR Client for 'GoFigr.io'
gofreg Bootstrap-Based Goodness-of-Fit Tests for
Parametric Regression
goft Tests of Fit for some Probability Distributions
goftest Classical Goodness-of-Fit Tests for Univariate
Distributions
gogarch Generalized Orthogonal GARCH (GO-GARCH) Models
goldfish Statistical Network Models for Dynamic Network
Data
goldilocks Goldilocks Adaptive Trial Designs for
Time-to-Event Endpoints
golem A Framework for Robust Shiny Applications
golfastr Efficiently Access Pro Golf Data
golfr Group Assignment Tool
gomp The gamma-OMP Feature Selection Algorithm
gompertztrunc Conducting Maximum Likelihood Estimation with
Truncated Mortality Data
gontr Dataset for 'GOxploreR'
goodpractice Advice on R Package Building
googleAnalyticsR Google Analytics API into R
googleAuthR Authenticate and Create Google APIs
googleCloudStorageR Interface with Google Cloud Storage API
googleCloudVisionR Access to the 'Google Cloud Vision' API for
Image Recognition, OCR and Labeling
googleErrorReportingR Send Error Reports to the Google Error
Reporting Service API
googleLanguageR Call Google's 'Natural Language', 'Cloud
Translation', 'Cloud Speech', and 'Cloud
Text-to-Speech' APIs
googlePolylines Encoding Coordinates into 'Google' Polylines
googlePublicData Working with Google's 'Public Data Explorer'
DSPL Metadata Files
googlePubsubR R Interface for Google 'Cloud Pub/Sub' REST API
googleTagManageR Access the 'Google Tag Manager' API using R
googleVis R Interface to Google Charts
googleadsR Access to 'Google Ads' via the 'Windsor.ai' API
googledrive An Interface to Google Drive
googlenlp An Interface to Google's Cloud Natural Language
API
googler Google from the R Console
googlesheets4 Access Google Sheets using the Sheets API V4
googletraffic Google Traffic
googleway Accesses Google Maps APIs to Retrieve Data and
Plot Maps
gooseR R Integration for 'Goose' AI
gor Algorithms for the Subject Graphs and Network
Optimization
goric Generalized Order-Restricted Information
Criterion
gorica Evaluation of Inequality Constrained Hypotheses
Using GORICA
gosset Tools for Data Analysis in Experimental
Agriculture
gotop Scroll Back to Top Icon in Shiny and R Markdown
govStatJPN functions to get public survey data in Japan
govdown GOV.UK Style Templates for R Markdown
governor Speed Limiter to Control Rate of Execution of
Loops
govinfoR A 'GovInfo' API Wrapper
gower Gower's Distance
goweragreement Bayesian Gower Agreement for Categorical Data
goxygen In-Code Documentation for 'GAMS'
gp Maximum Likelihood Estimation of the
Generalized Poisson Distribution
gpairs The Generalized Pairs Plot
gpbStat Comprehensive Statistical Analysis of Plant
Breeding Experiments
gpboost Combining Tree-Boosting with Gaussian Process
and Mixed Effects Models
gpcp Genomic Prediction of Cross Performance
gpindex Generalized Price and Quantity Indexes
gpk 100 Data Sets for Statistics Education
gpkg Utilities for the Open Geospatial Consortium
'GeoPackage' Format
gplite General Purpose Gaussian Process Modelling
gplm Generalized Partial Linear Models (GPLM)
gplots Various R Programming Tools for Plotting Data
gplsim Spline Estimation for GPLSIM
gpmap Analysing and Plotting Genotype-Phenotype Maps
gprofiler2 Interface to the 'g:Profiler' Toolset
gps General P-Splines
gps.track GPS Track Point Information Extractor
gpss Gaussian Processes for Social Science
gptoolsStan Gaussian Processes on Graphs and Lattices in
'Stan'
gptr A Convenient R Interface with the OpenAI
'ChatGPT' API
gptstudio Use Large Language Models Directly in your
Development Environment
gptzeror Identify Text Written by Large Language Models
using 'GPTZero'
gpyramid Identify Efficient Crossing Schemes for Gene
Pyramiding
gqlr 'GraphQL' Server in R
gquad Prediction of G Quadruplexes and Other Non-B
DNA Motifs
grImport Importing Vector Graphics
grImport2 Importing 'SVG' Graphics
graDiEnt Stochastic Quasi-Gradient Differential
Evolution Optimization
grabsampling Probability of Detection for Grab Sample
Selection
gradLasso Gradient Descent LASSO with Stability Selection
and Bootstrapped Confidence Intervals
grade Binary Grading functions for R.
gradeR Helps Grade Assignment Submissions in Common R
Formats
grafify Easy Graphs for Data Visualisation and Linear
Models for ANOVA
grafzahl Supervised Machine Learning for Textual Data
Using Transformers and 'Quanteda'
grainscape Landscape Connectivity, Habitat, and Protected
Area Networks
gramEvol Grammatical Evolution for R
grandR Comprehensive Analysis of Nucleotide Conversion
Sequencing Data
grangers Inference on Granger-Causality in the Frequency
Domain
grangersearch Granger Causality Testing for Time Series
granova Graphical Analysis of Variance
granovaGG Graphical Analysis of Variance Using ggplot2
grantham Calculate the Grantham Distance
grapes Make Binary Operators
grapesAgri1 Collection of Shiny Apps for Agricultural
Research Data Analysis
graph graph: A package to handle graph data
structures
graph3d A Wrapper of the JavaScript Library
'vis-graph3d'
graph4lg Build Graphs for Landscape Genetics Analysis
graphPAF Estimating and Displaying Population
Attributable Fractions
graphclust Hierarchical Graph Clustering for a Collection
of Networks
grapherator A Modular Multi-Step Graph Generator
graphicalEvidence Graphical Evidence
graphicalExtremes Statistical Methodology for Graphical Extreme
Value Models
graphicalMCP Graphical Multiple Comparison Procedures
graphicalVAR Graphical VAR for Experience Sampling Data
graphite GRAPH Interaction from pathway Topological
Environment
graphlayouts Additional Layout Algorithms for Network
Visualizations
graphon A Collection of Graphon Estimation Methods
graphonmix Generates Dense and Sparse Graphs using Graphon
Extensions
graphpcor Models for Correlation Matrices Based on Graphs
graphql A GraphQL Query Parser
graphsim Simulate Expression Data from 'igraph' Networks
graposas Graphical Approach Optimal Sample Size
grasps Groupwise Regularized Adaptive Sparse Precision
Solution
grateful Facilitate Citation of R Packages
grates Grouped Date Classes
gratia Graceful 'ggplot'-Based Graphics and Other
Functions for GAMs Fitted Using 'mgcv'
graticule Meridional and Parallel Lines for Maps
gratis Generating Time Series with Diverse and
Controllable Characteristics
grattan Australian Tax Policy Analysis
grattanInflators Inflators for Australian Policy Analysis
gravitas Explore Probability Distributions for Bivariate
Temporal Granularities
gravity Estimation Methods for Gravity Models
gravityGE One Sector Armington-CES Gravity Model with
General Equilibrium
gravmagsubs Gravitational and Magnetic Attraction of 3-D
Vertical Rectangular Prisms
greatR Gene Registration from Expression and
Time-Courses in R
grec Gradient-Based Recognition of Spatial Patterns
in Environmental Data
greed Clustering and Model Selection with the
Integrated Classification Likelihood
greekLetters Routines for Writing Greek Letters and
Mathematical Symbols on the 'RStudio' and
'RGui'
greeks Sensitivities of Prices of Financial Options
and Implied Volatilities
greenR Green Index Quantification, Analysis and
Visualization
greenbook HM Treasury Green Book Cost-Benefit Analysis
Primitives
greenclust Combine Categories Using Greenacre's Method
greencrab.toolkit Run 'Stan' Models to Interpret Green Crab
Monitoring Assessments
greenfeedr Process and Report 'GreenFeed' Data
gregRy GREGORY Estimation
gremlin Mixed-Effects REML Incorporating Generalized
Inverses
greport Graphical Reporting for Clinical Trials
grepreaper Efficient Data Filtering and Aggregation Using
Grep
gretel Generalized Path Analysis for Social Networks
gretlR A Seamless Integration of 'Gretl' and 'R'
grex Gene ID Mapping for Genotype-Tissue Expression
(GTEx) Data
greybox Toolbox for Model Building and Forecasting
grf Generalized Random Forests
gridBase Integration of base and grid graphics
gridBezier Bezier Curves in 'grid'
gridDebug Debugging 'grid' Graphics
gridExtra Miscellaneous Functions for "Grid" Graphics
gridGeometry Polygon Geometry in 'grid'
gridGraphics Redraw Base Graphics Using 'grid' Graphics
gridGraphviz Drawing Graphs with 'grid'
gridOT Approximate Optimal Transport Between
Two-Dimensional Grids
gridSVG Export 'grid' Graphics as SVG
griddy Geospatial Distribution Dynamics for Simple
Features
gridify Enrich Figures and Tables with Custom Headers
and Footers and More
gridmicrotex Native 'LaTeX' Math Rendering for Grid Graphics
gridpattern 'grid' Pattern Grobs
gridsampler A Simulation Tool to Determine the Required
Sample Size for Repertory Grid Studies
gridstackeR Wrapper for 'gridstack.js'
gridtext Improved Text Rendering Support for 'Grid'
Graphics
grizbayr Bayesian Inference for A|B and Bandit Marketing
Tests
grmsem Genetic-Relationship-Matrix Structural Equation
Modelling (GRMSEM)
grmtree Recursive Partitioning for Graded Response
Models
grnn General regression neural network
grobblR Creating Flexible, Reproducible 'PDF' Reports
groc Generalized Regression on Orthogonal Components
groqR A Coding Assistant using the Fast AI Inference
'Groq'
groundhog Version-Control for CRAN, GitHub, and GitLab
Packages
groupWQS Grouped Weighted Quantile Sum Regression
groupcompare Comparing Two Groups Using Various Descriptive
Statistics
groupdata2 Creating Groups from Data
groupedHyperframe Grouped Hyper Data Frame
groupedHyperframe.random
Simulated Point-Pattern via Vectorized
Parameterization
groupedSurv Efficient Estimation of Grouped Survival Models
Using the Exact Likelihood Function
grouper Optimal Assignment of Students to Groups
groupr Groups with Inapplicable Values
grouprar Group Response Adaptive Randomization for
Clinical Trials
groupwalk Implement the Group Walk Algorithm
grove Wavelet Functional ANOVA Through Markov Groves
growR Implementation of the Vegetation Model ModVege
growth Multivariate Normal and Elliptically-Contoured
Repeated Measurements Models
growthDecomp Decomposition of Growth Trends
growthPheno Functional Analysis of Phenotypic Growth Data
to Smooth and Extract Traits
growthTrendR Toolkit for Data Processing, Quality, and
Statistical Models
growthcleanr Data Cleaner for Anthropometric Measurements
growthcurver Simple Metrics to Summarize Growth Curves
growthmodels Nonlinear Growth Models
growthrate Bayesian reconstruction of growth velocity
growthrates Estimate Growth Rates from Experimental Data
grpCox Penalized Cox Model for High-Dimensional Data
with Grouped Predictors
grpSLOPE Group Sorted L1 Penalized Estimation
grplasso Fitting User-Specified Models with Group Lasso
Penalty
grpnet Group Elastic Net Regularized GLMs and GAMs
grpreg Regularization Paths for Regression Models with
Grouped Covariates
grpsel Group Subset Selection
grpseq Group Sequential Analysis of Clinical Trials
grt General Recognition Theory
grumpy Read 'NumPy' '.npy' and '.npz' Files
grwat River Hydrograph Separation and Analysis
gsClusterDetect Utilities for Geo-Spatial Cluster Detection and
Significance Classification
gsDesign Group Sequential Design
gsDesign2 Group Sequential Design with Non-Constant
Effect
gsDesignNB Sample Size and Simulation for Negative
Binomial Outcomes
gsDesignTune Dependency-Aware Scenario Exploration for Group
Sequential Designs
gsEasy Gene Set Enrichment Analysis in R
gsMAMS Group Sequential Designs of Multi-Arm
Multi-Stage Trials
gsMeanFreq Group Sequential Clinical Trial Designs for
Composite Endpoints
gsalib Utility Functions for 'GATK'
gsaot Compute Global Sensitivity Analysis Indices
Using Optimal Transport
gsarima Two Functions for Generalized SARIMA Time
Series Simulation
gsbDesign Group Sequential Bayes Design
gsbm Estimate Parameters in the Generalized SBM
gscaLCA Generalized Structure Component Analysis-
Latent Class Analysis & Latent Class Regression
gscounts Group Sequential Designs with Negative Binomial
Outcomes
gscramble Simulating Admixed Genotypes Without
Replacement
gsearly Creates Group Sequential Trial Designs when
Early Outcomes are Available
gseries Improve the Coherence of Your Time Series Data
gsheet Download Google Sheets Using Just the URL
gsignal Signal Processing
gsisdecoder High Efficient Functions to Decode NFL Player
IDs
gsl Wrapper for the Gnu Scientific Library
gslnls GSL Multi-Start Nonlinear Least-Squares Fitting
gsloid Global Sea Level and Oxygen Isotope Data
gson Base Class and Methods for 'gson' Format
gspcr Generalized Supervised Principal Component
Regression
gsrs A Group-Specific Recommendation System
gsrsb Group Sequential Refined Secondary Boundary
gss General Smoothing Splines
gstar Generalized Space-Time Autoregressive Model
gstat Spatial and Spatio-Temporal Geostatistical
Modelling, Prediction and Simulation
gstsm Generalized Spatial-Time Sequence Miner
gsubfn Utilities for Strings and Function Arguments
gsw Gibbs Sea Water Functions
gsynth Generalized Synthetic Control Method
gt Easily Create Presentation-Ready Display Tables
gt4ireval Generalizability Theory for Information
Retrieval Evaluation
gtDesign Convex Optimal Designs for Group Testing
Experiments
gtExtras Extending 'gt' for Beautiful HTML Tables
gtWAS Genome and Transcriptome Wide Association Study
gtable Arrange 'Grobs' in Tables
gtakeout Extract Data from Google Takeout
gte Generalized Turnbull's Estimator
gtexr Query the GTEx Portal API
gtexture Generalized Application of Co-Occurrence
Matrices and Haralick Texture
gtfs2emis Estimating Public Transport Emissions from
General Transit Feed Specification (GTFS) Data
gtfs2gps Converting Transport Data from GTFS Format to
GPS-Like Records
gtfsio Read and Write General Transit Feed
Specification (GTFS) Files
gtfsrealtime Read GTFS-Realtime Files into Data Frames
gtfsrouter Routing with 'GTFS' (General Transit Feed
Specification) Data
gtfstools General Transit Feed Specification (GTFS)
Editing and Analysing Tools
gtheoryr Simple Generalizability Theory for Crossed and
Nested Designs
gto Insert 'gt' Tables into Word Documents
gtools Various R Programming Tools
gtranslate Translate Between Different Languages
gtreg Regulatory Tables for Clinical Research
gtregression Tools for Creating Publication-Ready Regression
Tables
gtrendsR Perform and Display Google Trends Queries
gtrendshealth Query the 'Google Trends for Health' API
gtsummary Presentation-Ready Data Summary and Analytic
Result Tables
guaguas Nombres Inscritos en Chile (1920 - 2021)
guardianapi Access 'The Guardian' Newspaper Open Data API
guescini Real-Time PCR Data Sets by Guescini et al.
(2008)
guess Adjust Estimates of Learning for Guessing
guideR Miscellaneous Statistical Functions Used in
'guide-R'
guidedPLS Supervised Dimensional Reduction by Guided
Partial Least Squares
guildai Track Machine Learning Experiments
guiplot User-Friendly GUI Plotting Tools
guix.install Install R Packages with GNU Guix
gumbel The Gumbel-Hougaard Copula
gumboot Bootstrap Analyses of Sampling Uncertainty in
Goodness-of-Fit Statistics
gunit Converts Conductance Units
gunsales Statistical Analysis of Monthly Background
Checks of Gun Purchases
gustave A User-Oriented Statistical Toolkit for
Analytical Variance Estimation
gutenbergr Download and Process Public Domain Works from
Project Gutenberg
gvc Global Value Chains Tools
gvcAnalyzer Global Value Chain Decomposition for
Value-Added Trade
gvcR Genotypic Variance Components
gvlma Global Validation of Linear Models Assumptions
gwaRs Manhattan, Q-Q, and PCA Plots using 'ggplot2'
gwas2crispr GWAS-to-CRISPR Data Pipeline for
High-Throughput SNP Target Extraction
gwasforest Make Forest Plot with GWAS Data
gwasrapidd 'REST' 'API' Client for the 'NHGRI'-'EBI'
'GWAS' Catalog
gwbr Local and Global Beta Regression
gwid Genome-Wide Identity-by-Descent
gwpcormapper Geographically Weighted Partial Correlation
Mapper
gwrpvr Genome-Wide Regression P-Value (Gwrpv)
gwrr Fits Geographically Weighted Regression Models
with Diagnostic Tools
gwzinbr Geographically Weighted Zero Inflated Negative
Binomial Regression
gym Provides Access to the OpenAI Gym API
gypsum Interface to the gypsum REST API
h0 A Robust Bayesian Meta-Analysis for Estimating
the Hubble Constant via Time Delay Cosmography
h2o R Interface for the 'H2O' Scalable Machine
Learning Platform
h2o4gpu Interface to 'H2O4GPU'
h2otools Machine Learning Model Evaluation for 'h2o'
Package
h3jsr Access Uber's H3 Library
h3lib Exposes the 'Uber' 'H3' Library to R Packages
h3o H3 Geospatial Indexing System
h3r Hexagonal Hierarchical Geospatial Indexing
System
h3sdm Species Distribution Modeling with H3 Grids
h5lite Simplified 'HDF5' Interface
h5mread A fast HDF5 reader
hNMF Hierarchical Non-Negative Matrix Factorization
hR Better Data Engineering in Human Resources
hSDM Hierarchical Bayesian Species Distribution
Models
haarfisz Software to Perform Haar Fisz Transforms
hablar Non-Astonishing Results in R
habtools Tools and Metrics for 3D Surfaces and Objects
hackeRnews Wrapper for the 'Official Hacker News' API
hagis Analysis of Plant Pathogen Pathotype
Complexities, Distributions and Diversity
hahmmr Haplotype-Aware Hidden Markov Model for RNA
hakaiApi Authenticated HTTP Request Client for the
'Hakai' API
hal9001 The Scalable Highly Adaptive Lasso
haldensify Highly Adaptive Lasso Conditional Density
Estimation
halfmoon Techniques to Build Better Balance
ham Healthcare Analysis Methods
hamlet Hierarchical Optimal Matching and Machine
Learning Toolbox
handcodeR Text Annotation App
handlr Convert Among Citation Formats
handwriter Handwriting Analysis in R
handwriterApp A 'shiny' Application for Handwriting Analysis
handwriterRF Handwriting Analysis with Random Forests
handyplots Handy Plots
hann Hopfield Artificial Neural Networks
hans Haversines are not Slow
hanyupinyin Convert Chinese Characters into Hanyu Pinyin
hapassoc Inference of Trait Associations with SNP
Haplotypes and Other Attributes using the EM
Algorithm
haplo.stats Statistical Analysis of Haplotypes with Traits
and Covariates when Linkage Phase is Ambiguous
haplotyper Tool for Clustering Genotypes in Haplotypes
haplotypes Manipulating DNA Sequences and Estimating
Unambiguous Haplotype Network with Statistical
Parsimony
happign R Interface to 'IGN' Web Services
harbinger A Unified Time Series Event Detection Framework
hardhat Construct Modeling Packages
harmonicmeanp Harmonic Mean p-Values and Model Averaging by
Mean Maximum Likelihood
harmonizer Harmonizing CN8 and PC8 Product Codes
harmony Fast, Sensitive, and Accurate Integration of
Single Cell Data
harmonydata R Library for 'Harmony'
harness Curated Agentic Harnesses for R Professional
Roles
harrietr Wrangle Phylogenetic Distance Matrices and
Other Utilities
harrypotter Palettes Generated from All "Harry Potter"
Movies
hash Full Featured Implementation of Hash
Tables/Associative Arrays/Dictionaries
hashids Generate Short Unique YouTube-Like IDs (Hashes)
from Integers
hashmapR Fast, Vectorized Hashmap
hashr Hash R Objects to Integers Fast
hassediagrams Hasse Diagram of the Layout Structure and
Restricted Layout Structure
hatchR Predict Fish Hatch and Emergence Timing
hatemicoint Hatemi-J Cointegration Test with Two Unknown
Regime Shifts
hatsurvey Survey Indicator Estimation for Complex Survey
Designs
havel Visualize and Tabulate 'R' Package Dependencies
haven Import and Export 'SPSS', 'Stata' and 'SAS'
Files
hawkes Hawkes process simulation and calibration
toolkit
hawkesbow Estimation of Hawkes Processes from Binned
Observations
hazer Identifying Foggy and Cloudy Images by
Quantifying Haziness
hbal Hierarchically Regularized Entropy Balancing
hbamr Hierarchical Bayesian Aldrich-McKelvey Scaling
via 'Stan'
hbbr Hierarchical Bayesian Benefit-Risk Assessment
Using Discrete Choice Experiment
hbim Hill/Bliss Independence Model for Combination
Vaccines
hbmem Hierarchical Bayesian Analysis of Recognition
Memory
hbsae Hierarchical Bayesian Small Area Estimation
hbsaems Hierarchical Bayesian Area-Level Small Area
Estimation Models
hcandersenr H.C. Andersens Fairy Tales
hcci Interval Estimation of Linear Models with
Heteroskedasticity
hce Design and Analysis of Hierarchical Composite
Endpoints
hchinamap Mapping China and Its Provinces
hcidata HCI Datasets
hcinfer Heteroskedasticity-Consistent Inference for
Linear Models
hclust1d Hierarchical Clustering of Univariate (1d) Data
hclustTeach Hierarchical Cluster Analysis (Learning
Didactically)
hclusteasy Determining Hierarchical Clustering Easily
hcruR Estimate, Compare, and Visualize Healthcare
Resource Utilization for Real-World Evidence
hctrial Using Historical Controls for Designing Phase
II Clinical Trials
hdImpute A Batch Process for High Dimensional Imputation
hdMTD Inference for High-Dimensional Mixture
Transition Distribution Models
hda Heteroscedastic Discriminant Analysis
hdar 'REST' API Client for Accessing Data on 'WEkEO
HDA V2'
hdbayes Bayesian Analysis of Generalized Linear Models
with Historical Data
hdbcp Bayesian Change Point Detection for
High-Dimensional Data
hdbinseg Change-Point Analysis of High-Dimensional Time
Series via Binary Segmentation
hdbma Bayesian Mediation Analysis with
High-Dimensional Data
hdcate Estimation of Conditional Average Treatment
Effects with High-Dimensional Data
hdcuremodels High-Dimensional Cure Models
hdd Easy Manipulation of Out of Memory Data Sets
hdf5lib Headers and Static Libraries for 'HDF5'
hdf5r Interface to the 'HDF5' Binary Data Format
hdf5r.Extra Extensions for 'HDF5' R Interfaces
hdflex High-Dimensional Aggregate Density Forecasts
hdfqlr Interface to 'HDFql' API
hdftsa High-Dimensional Functional Time Series
Analysis
hdi High-Dimensional Inference
hdiVAR Statistical Inference for Noisy Vector
Autoregression
hdm High-Dimensional Metrics
hdme High-Dimensional Regression with Measurement
Error
hdnom Benchmarking and Visualization Toolkit for
Penalized Cox Models
hdpGLM Hierarchical Dirichlet Process Generalized
Linear Models
hdpca Principal Component Analysis in
High-Dimensional Data
hdqr Fast Algorithm for Penalized Quantile
Regression
hdrcde Highest Density Regions and Conditional Density
Estimation
hds Hazard Discrimination Summary
hdsvm Fast Algorithm for Support Vector Machine
hdtg Generate Samples from Multivariate Truncated
Normal Distributions
hdthreshold Inference on Many Jumps in Nonparametric Panel
Regression Models
headliner Compose Sentences to Describe Comparisons
healthatlas Explore and Import 'Metopio' Health Atlas Data
and Spatial Layers
healthbR Access Brazilian Public Health Data
healthcare.antitrust Healthcare Antitrust Analysis
healthdb Working with Healthcare Databases
healthequal Compute Summary Measures of Health Inequality
healthfinance Financial Projections and Planning for Health
Care Practices
healthiar Quantifying and Monetizing Health Impacts
Attributable to Exposure
healthmotionR A Comprehensive Collection of Health and Human
Motion Datasets
healthyAddress Convert Addresses to Standard Inputs
healthyR Hospital Data Analysis Workflow Tools
healthyR.ai The Machine Learning and AI Modeling Companion
to 'healthyR'
healthyR.data Data Only Package to 'healthyR'
healthyR.ts The Time Series Modeling Companion to
'healthyR'
heaping Correction of Heaping on Individual Level
heapsofpapers Easily Download Heaps of PDF and CSV Files
heartbeatr A Workflow to Process Data Collected with PULSE
Systems
heatex Heat exchange calculations during physical
activity.
heatindex Calculating Heat Stress
heatmap3 An Improved Heatmap Package
heatmapFit Fit Statistic for Binary Dependent Variable
Models
heatmapFlex Tools to Generate Flexible Heatmaps
heatmaply Interactive Cluster Heat Maps Using 'plotly'
and 'ggplot2'
heattree A Self-Contained Widget for Interactive
Phylogenetic Tree Visualization
heatwaveR Detect Heatwaves and Cold-Spells
heavytails Estimators and Algorithms for Heavy-Tailed
Distributions
heck Highly Performant String Case Converter
heckmanGE Estimation and Inference for Heckman Selection
Models with Cluster-Robust Variance
heddlr Dynamic R Markdown Document Generation
hedgehog Property-Based Testing
heemod Markov Models for Health Economic Evaluations
heimdall Drift Adaptable Models
heims Decode and Validate HEIMS Data from Department
of Education, Australia
heiscore Score and Plot the Healthy Eating Index from
NHANES Data
heiscore.data Data Only Package to 'heiscore'
helixvis Visualize Alpha-Helical Peptide Sequences
hellno Providing 'stringsAsFactors=FALSE' Variants of
'data.frame()' and 'as.data.frame()'
helloJavaWorld Hello Java World
hellodatascience Datasets from the Hello Data Science Book
hellokitty A Hello Kitty Color Palette Generator
hellorust Minimal Examples of Using Rust Code in R
helsinki R Tools for Helsinki Open Data
hemat Hematimetric Indices Calculator
hemispheR Processing Hemispherical Canopy Images
henna A Versatile Visualization Suite
heplots Visualizing Hypothesis Tests in Multivariate
Linear Models
hera Companion to the 'xeus-r' 'jupyter' Kernel
here A Simpler Way to Find Your Files
hereR 'sf'-Based Interface to the 'HERE' REST APIs
heritability Marker-Based Estimation of Heritability Using
Individual Plant or Plot Data
heritable Heritability Estimation from Mixed Models
hermite Generalized Hermite Distribution
hermiter Efficient Sequential and Batch Estimation of
Univariate and Bivariate Probability Density
Functions and Cumulative Distribution Functions
along with Quantiles (Univariate) and
Nonparametric Correlation (Bivariate)
hero Spatio-Temporal (Hero) Sandwich Smoother
hesim Health Economic Simulation Modeling and
Decision Analysis
hetGP Heteroskedastic Gaussian Process Modeling and
Design under Replication
hetcorFS Unsupervised Feature Selection using the
Heterogeneous Correlation Matrix
heterocop Semi-Parametric Estimation with Gaussian Copula
heterogen Spatial Functions for Heterogeneity and Climate
Variability
heterometa Convert Various Meta-Analysis Heterogeneity
Measures
heteromixgm Copula Graphical Models for Heterogeneous Mixed
Data
hetsurr Assessing Heterogeneity in the Utility of a
Surrogate Marker
hetsurrSurv Assessing Heterogeneity in Surrogacy Using
Censored Data
hett Heteroscedastic t-Regression
hettest Testing for a Treatment Effect Using a
Heterogeneous Surrogate Marker
hettx Fisherian and Neymanian Methods for Detecting
and Measuring Treatment Effect Variation
hetu Structural Handling of Finnish Personal
Identity Codes
heumilkr Heuristic Capacitated Vehicle Routing Problem
Solver
heuristica Heuristics Including Take the Best and
Unit-Weight Linear
hexDensity Fast Kernel Density Estimation with Hexagonal
Grid
hexSticker Create Hexagon Sticker in R
hexView Viewing Binary Files
hexbin Hexagonal Binning Routines
hexfont 'GNU Unifont' Hex Fonts
hexify Equal-Area Hex Grids on the 'Snyder' 'ISEA'
'Icosahedron'
hexsession Create a Tile of Logos for Loaded Packages
hextri Hexbin Plots with Triangles
hfhub Hugging Face Hub Interface
hflights Flights that departed Houston in 2011
hfr Estimate Hierarchical Feature Regression Models
hglm Hierarchical Generalized Linear Models
hglm.data Data for the 'hglm' Package
hgm Holonomic Gradient Method and Gradient Descent
hgnc Import Human Gene Nomenclature
hgutils Collection of Utility Functions
hgwrr Hierarchical and Geographically Weighted
Regression
hhdynamics Fitting Household Transmission Model to
Estimate Household Transmission Dynamics of
Influenza
hhh4contacts Age-Structured Spatio-Temporal Models for
Infectious Disease Counts
hhmR Hierarchical Heatmaps
hhsmm Hidden Hybrid Markov/Semi-Markov Model Fitting
hht The Hilbert-Huang Transform: Tools and Methods
hibayes Individual-Level, Summary-Level and Single-Step
Bayesian Regression Model
hicp Harmonised Index of Consumer Prices
hicream HIC diffeREntial Analysis Method
hiddenf The All-Configurations, Maximum-Interaction
F-Test for Hidden Additivity
hidecan Create HIDECAN Plots for Visualising
Genome-Wide Association Studies and
Differential Expression Results
hidradenitis Calculate Clinical Scores for Hidradenitis
Suppurativa (HS), a Dermatologic Disease
hierBipartite Bipartite Graph-Based Hierarchical Clustering
hierNest Penalized Regression with Hierarchical Nested
Parameterization Structure
hierNet A Lasso for Hierarchical Interactions
hierSDR Hierarchical Sufficient Dimension Reduction
hierarchicalSets Set Data Visualization Using Hierarchies
hierfstat Estimation and Tests of Hierarchical
F-Statistics
highDmean Testing Two-Sample Mean in High Dimension
highMLR Machine Learning Feature Selection for High
Dimensional Survival Data
highOrderPortfolios Design of High-Order Portfolios Including
Skewness and Kurtosis
highTtest Simultaneous Critical Values for t-Tests in
Very High Dimensions
highcharter A Wrapper for the 'Highcharts' Library
highd2means High-Dimensional Tests for Two Population Mean
Vectors
highdir Backend-Agnostic Figure Builder for
'highcharter' and 'ggplot2'
highfrequency Tools for Highfrequency Data Analysis
highlight Syntax Highlighter
highlightHTML Highlight HTML Text and Tables
highlighter Code Syntax Highlighting using the 'Prism.js'
Library
highlightr Highlight Conserved Edits Across Versions of a
Document
highr Syntax Highlighting for R Source Code
highriskzone Determining and Evaluating High-Risk Zones
highs 'HiGHS' Optimization Solver
hightR HIGHT Algorithm
higrad Statistical Inference for Online Learning and
Stochastic Approximation via HiGrad
hilbertSimilarity Hilbert Similarity Index for High Dimensional
Data
hildareadR Extract Variables from HILDA
hillR Diversity Through Hill Numbers
hillshader Create Hillshade Relief Maps Using Ray-Tracing
himach Find Routes for Supersonic Aircraft
hindexcalculator H-Index Calculator using Data from a Web of
Science (WoS) Citation Report
hint Tools for Hypothesis Testing Based on
Hypergeometric Intersection Distributions
hipecR Tools for Analysing HIPEC Patient Data
hiphop Parentage Assignment using Bi-Allelic Genetic
Markers
hippie Hippie Code Completion in 'RStudio'
hipread Read Hierarchical Fixed Width Files
hirisplexr From 'PLINK' to 'HIrisPlex'
hisse Hidden State Speciation and Extinction
histmdl A Most Informative Histogram-Like Model
histogram Construction of Regular and Irregular
Histograms with Different Options for Automatic
Choice of Bins
historicalborrow Non-Longitudinal Bayesian Historical Borrowing
Models
historydata Data Sets for Historians
histoslider A Histogram Slider Input for 'Shiny'
hitandrun "Hit and Run" and "Shake and Bake" for Sampling
Uniformly from Convex Shapes
hivdata Six-Year Chronological Data of HIV and ART
Cases in Pakistan
hive Hadoop InteractiVE
hkdatasets Datasets Related to Hong Kong
hkevp Spatial Extreme Value Analysis with the
Hierarchical Model of Reich and Shaby (2012)
hlaR Tools for HLA Data
hlidacr Access Data from the 'Hlídač Státu' API
hlmLab Hierarchical Linear Modeling with Visualization
and Decomposition
hlrhotrix Algebraic Operations and Visualisation for
Hl-Rhotrices
hlt Higher-Order Item Response Theory
hmcdm Hidden Markov Cognitive Diagnosis Models for
Learning
hmclearn Fit Statistical Models Using Hamiltonian Monte
Carlo
hmde Hierarchical Methods for Differential Equations
hmer History Matching and Emulation Package
hmetad Fit the Meta-D' Model of Confidence Ratings
Using 'brms'
hmix Hidden Markov Model for Predicting Time
Sequences with Mixture Sampling
hmm.discnp Hidden Markov Models with Discrete
Non-Parametric Observation Distributions
hmmTMB Fit Hidden Markov Models using Template Model
Builder
hmmTensor Hidden Markov Model by Matrix and Tensor
Decomposition
hmmm Hierarchical Multinomial Marginal Models
hmmr Mixture and Hidden Markov Models with R:
Datasets and Example Code
hmrc Download and Tidy 'HMRC' Statistical Data
hms Pretty Time of Day
hmsidwR Health Metrics and the Spread of Infectious
Diseases
hmsr Multipopulation Evolutionary Strategy HMS
hmstimer 'hms' Based Timer
hnp Half-Normal Plots with Simulation Envelopes
hoardr Manage Cached Files
hoboR Weather Station Data Summarization and
Manipulation for HOBO Data Loggers
hockeystick Download and Visualize Essential Climate Change
Data
holi Higher Order Likelihood Inference Web
Applications
holideh Working with Canadian Dates
holiglm Holistic Generalized Linear Models
holland Statistics for Holland's Theory of Vocational
Choice
hollr Chat Completion and Text Annotation with Local
and OpenAI Models
holobiont Microbiome Analysis Tools
holodeck A Tidy Interface for Simulating Multivariate
Data
homals Gifi Methods for Optimal Scaling
hommel Methods for Closed Testing with Simes
Inequality, in Particular Hommel's Method
homnormal Tests of Homogeneity of Variances
homologene Quick Access to Homologene and Gene Annotation
Updates
homomorpheR Homomorphic Computations in R
hoopR Access Men's Basketball Play by Play Data
hopbyhop Transmissions and Receptions in a Hop by Hop
Network
hopit Hierarchical Ordered Probit Models with
Application to Reporting Heterogeneity
hopkins Calculate Hopkins Statistic for Clustering
hornpa Horn's (1965) Test to Determine the Number of
Components/Factors
horsey Access to the 'Lichess' API
hosm High Order Spatial Matrix
hospitals Portuguese 'NHS' Hospitals
hot.deck Multiple Hot Deck Imputation
hotpatchR Runtime Namespace Patching Utilities for R
Packages
hotspot Software Hotspot Analysis
hotspots Hot Spots
houba Manipulation of (Large) Memory-Mapped Objects
(Vectors, Matrices and Arrays)
hours2lessons Alocă Pe Ore Lecțiile Zilei
housingData U.S. Housing Data from 2008 to 2016
hover CSS Animations for 'shiny' Button Elements
howManyImputations Calculate How many Imputations are Needed for
Multiple Imputation
howler 'Shiny' Extension of 'howler.js'
howzatR Useful Functions for Cricket Analysis
hpa Distributions Hermite Polynomial Approximation
hpackedbubble Create Split Packed Bubble Charts
hpcwld High Performance Cluster Models Based on
Kiefer-Wolfowitz Recursion
hpfilter The One- And Two-Sided Hodrick-Prescott Filter
hpiR House Price Indexes
hqmisc Miscellaneous Convenience Functions and Dataset
hqreg Regularization Paths for Lasso or Elastic-Net
Penalized Huber Loss Regression and Quantile
Regression
hrbrthemes Additional Themes, Theme Components and
Utilities for 'ggplot2'
hrcomprisk Nonparametric Assessment Between Competing
Risks Hazard Ratios
hrf Hemodynamic Response Function
hrqglas Group Variable Selection for Quantile and
Robust Mean Regression
hrt Heteroskedasticity Robust Testing
hrtlFMC Half Replicate of Two Level Factorial Run Order
with Minimum Level Changes
hscovar Calculation of Covariance Between Markers for
Half-Sib Families
hse The hse Distribution
hsem Hierarchical Structural Equation Model
hset Sets of Numbers Implemented with Hash Tables
hsphase Phasing, Pedigree Reconstruction, Sire
Imputation and Recombination Events
Identification of Half-sib Families Using SNP
Data
hspm Heterogeneous Spatial Models
hsrecombi Estimation of Recombination Rate and Maternal
LD in Half-Sibs
hsstan Hierarchical Shrinkage Stan Models for
Biomarker Selection
hstats Interaction Statistics
htaBIM Budget Impact Modelling for Health Technology
Assessment
htestClust Reweighted Marginal Hypothesis Tests for
Clustered Data
htetree Causal Inference with Tree-Based Machine
Learning Algorithms
htm2txt Convert Html into Text
html2R Convert 'HTML' to 'R' with a 'Shiny' App
html2pdfR Convert Local 'HTML' and 'XHTML' Files to 'PDF'
html5 Creates Valid HTML5 Strings
htmlTable Advanced Tables for Markdown/HTML
htmlreportR 'HTML' Reporting Made Simple(R)
htmltools Tools for HTML
htmlwidgets HTML Widgets for R
htmxr Build Modern Web Applications with 'htmx' and
'plumber2'
htrSPRanalysis Analysis of Surface Plasmon Resonance Data
hts Hierarchical and Grouped Time Series
htsDegenerateR Degenerate Hierarchical Time Series
Reconciliation
htsr Hydro-Meteorology Time-Series
httk High-Throughput Toxicokinetics
httkexamples High-Throughput Toxicokinetics Examples
httpcache Query Cache for HTTP Clients
httpcode 'HTTP' Status Code Helper
httpgd A 'HTTP' Server Graphics Device
httping 'Ping' 'URLs' to Time 'Requests'
httpproblems Report Errors in Web Applications with 'Problem
Details' (RFC 7807)
httptest A Test Environment for HTTP Requests
httptest2 Test Helpers for 'httr2'
httpuv HTTP and WebSocket Server Library
httr Tools for Working with URLs and HTTP
httr2 Perform HTTP Requests and Process the Responses
hubEnsembles Ensemble Methods for Combining Hub Model
Outputs
hubUtils Core 'hubverse' Utilities
hubeau Get Data from the French National Database on
Water 'Hub'Eau'
hudr Providing Data from the US Department of
Housing and Urban Development
hues Distinct Colour Palettes Based on 'iwanthue'
huge High-Dimensional Undirected Graph Estimation
huito Reproducible and Flexible Label Design
humanFormat Human-Friendly Formatting Functions
humaniformat A Parser for Human Names
humanleague Synthetic Population Generator
humidity Calculate Water Vapor Measures from Temperature
and Dew Point
hunspell High-Performance Stemmer, Tokenizer, and Spell
Checker
hurricaneexposure Explore and Map County-Level Hurricane Exposure
in the United States
hutils Miscellaneous R Functions and Aliases
hutilscpp Miscellaneous Functions in C++
huxtable Easily Create and Style Tables for LaTeX, HTML
and Other Formats
hwde Models and Tests for Departure from
Hardy-Weinberg Equilibrium and Independence
Between Loci
hwep Hardy-Weinberg Equilibrium in Polyploids
hwig Half-Weight Index Gregariousness
hwordcloud Rendering Word Clouds
hwriter HTML Writer - Outputs R Objects in HTML Format
hwsdr Interface to the 'HWSD' Web Services
hwwntest Tests of White Noise using Wavelets
hySAINT Hybrid Genetic and Simulated Annealing
Algorithm for High Dimensional Linear Models
with Interaction Effects
hySpc.testthat Unit Test Add-on for 'testthat'
hybridEHR Synthetic Hybrid Electronic Health Record
Generation for SARS-Related Research and CT
Views
hybridModels An R Package for the Stochastic Simulation of
Disease Spreading in Dynamic Networks
hybridogram Function that Creates a Heat Map from
Hybridization Data
hybridts Hybrid Time Series Forecasting Using Error
Remodeling Approach
hyd1d 1d Water Level Interpolation along the Rivers
Elbe and Rhine
hydReng Hydraulic Engineering Tools
hydflood Flood Extents and Duration along the Rivers
Elbe and Rhine
hydra Hyperbolic Embedding
hydraulics Basic Pipe and Open Channel Hydraulics
hydroDCindex Duration Curve Hydrological Model Indexes
hydroEvents Extract Event Statistics in Hydrologic Time
Series
hydroGOF Goodness-of-Fit Functions for Comparison of
Simulated and Observed Hydrological Time Series
hydroMOPSO Multi-Objective Optimisation with Focus on
Environmental Models
hydroState Hidden Markov Modelling of Hydrological State
Change
hydroTSM Time Series Management and Analysis for
Hydrological Modelling
hydroToolkit Hydrological Tools for Handling
Hydro-Meteorological Data from Argentina and
Chile
hydrocan Unified Access to Canadian Hydrometric Data
hydrodownloadR Hydrologic Station Catalogs and Time Series
from Public APIs
hydroeval Hydrological Evaluation Metrics and
Goodness-of-Fit Summaries
hydroloom Utilities to Weave Hydrologic Fabrics
hydropeak Detect and Characterize Sub-Daily Flow
Fluctuations
hydroroute Trace Longitudinal Hydropeaking Waves
hydrostats Hydrologic Indices for Daily Time Series Data
hydrotoolbox Hydrological Tools for Handling
Hydro-Meteorological Data Records
hyfo Hydrology and Climate Forecasting
hyper.fit N-Dimensional Hyperplane Fitting with Errors
hyper.gam Generalized Additive Models with Hyper Column
hyper2 The Hyperdirichlet Distribution, Mark 2
hyperSpec Work with Hyperspectral Data, i.e. Spectra +
Meta Information (Spatial, Time, Concentration,
...)
hyperbolicDEA Hyperbolic DEA Estimation
hypercube Organizing Data in Hypercubes
hypergate Machine Learning of Hyperrectangular Gating
Strategies for High-Dimensional Cytometry
hypergeo The Gauss Hypergeometric Function
hypergeo2 Generalized Hypergeometric Function with
Tunable High Precision
hyperoverlap Overlap Detection in n-Dimensional Space
hypertext 'HTML' Element Construction
hypervolume High Dimensional Geometry, Set Operations,
Projection, and Inference Using Kernel Density
Estimation, Support Vector Machines, and Convex
Hulls
hypoRF Random Forest Two-Sample Tests
hypothesis Wrapper for 'hypothes.is'
hypothesisr Wrapper for the 'Hypothes.is' Web Annotation
Service
hypothesize Consistent API for Hypothesis Testing
hypr Hypothesis Matrix Translation
hyreg2 Estimate Latent Classes on a Mixture of
Continuous and Dichotomous Data
hystReet Get Pedestrian Frequency Data from the
'Hystreet' Project
hystar Fit the Hysteretic Threshold Autoregressive
Model
hysteresis Tools for Modeling Rate-Dependent Hysteretic
Processes and Ellipses
hytest Hypothesis Testing Based on Neyman-Pearson
Lemma and Likelihood Ratio Test
i18n Internationalization Data from the 'Unicode
CLDR' in Tabular Form
i3pack Incentives for Inter- And Intra-Party Electoral
Competition
iAR Irregularly Observed Autoregressive Models
iAdapt Two-Stage Adaptive Dose-Finding Clinical Trial
Design
iBST Improper Bagging Survival Tree
iBreakDown Model Agnostic Instance Level Variable
Attributions
iC10 A Copy Number and Expression-Based Classifier
for Breast Tumours
iC10TrainingData Training Datasets for iC10 Package
iCAMP Infer Community Assembly Mechanisms by
Phylogenetic-Bin-Based Null Model Analysis
iCellR Analyzing High-Throughput Single Cell
Sequencing Data
iClick A Button-Based GUI for Financial and Economic
Data Analysis
iClusterVB Fast Integrative Clustering and Feature
Selection for High Dimensional Data
iDIFr Intersectional Differential Item Functioning
Analysis
iDINGO Integrative Differential Network Analysis in
Genomics
iDOS Integrated Discovery of Oncogenic Signatures
iDOVE Durability of Vaccine Efficacy Against
SARS-CoV-2 Infection
iForecast Machine Learning Time Series Forecasting
iGSEA Integrative Gene Set Enrichment Analysis
Approaches
iGasso Statistical Tests and Utilities for Genetic
Association
iGraphMatch Tools for Graph Matching
iIneq Computing Individual Components of the Gini and
the Theil Indices
iMRMC Multi-Reader, Multi-Case Analysis Methods (ROC,
Agreement, and Other Metrics)
iMediate Likelihood Methods for Mediation Analysis
iNEXT Interpolation and Extrapolation for Species
Diversity
iNEXT.3D Interpolation and Extrapolation for Three
Dimensions of Biodiversity
iNEXT.4steps Four-Step Biodiversity Analysis Based on
'iNEXT'
iNEXT.beta3D Interpolation and Extrapolation with Beta
Diversity for Three Dimensions of Biodiversity
iNZightMR Tools for Exploring Multiple Response Data
iNZightPlots Graphical Tools for Exploring Data with
'iNZight'
iNZightRegression Tools for Exploring Regression Models with
'iNZight'
iNZightTS Time Series for 'iNZight'
iNZightTools Tools for 'iNZight'
iPRISM Intelligent Predicting Response to Cancer
Immunotherapy Through Systematic Modeling
iPRSue Individual Polygenic Risk Score Uncertainty
Estimation
iRegression Regression Methods for Interval-Valued
Variables
iRepro Reproducibility for Interval-Censored Data
iRfcb Tools for Managing Imaging FlowCytobot (IFCB)
Data
iRoCoDe Incomplete Row-Column Designs
iSFun Integrative Dimension Reduction Analysis for
Multi-Source Data
iSTATS A Graphical Interface to Perform STOCSY
Analyses on NMR Data
iSTAY Information-Based Stability and Synchrony
Measures
iSubGen Integrative Subtype Generation
iTOP Inferring the Topology of Omics Data
iTOS Methods and Examples from Introduction to the
Theory of Observational Studies
iTensor ICA-Based Matrix/Tensor Decomposition
iWeigReg Improved Methods for Causal Inference and
Missing Data Problems
iZID Identify Zero-Inflated Distributions
iadf Analysis of Intra Annual Density Fluctuations
iai Interface to 'Interpretable AI' Modules
ialiquor Monthly Iowa Liquor Sales Summary
iapws Formulations of the International Association
for the Properties of Water and Steam
iarm Item Analysis in Rasch Models
ib Bias Correction via Iterative Bootstrap
ibawds Functions and Datasets for the Data Science
Course at IBAW
ibb R Wrapper for Istanbul Municipality Open Data
Portal
ibd Incomplete Block Designs
ibdfindr HMM Toolkit for Inferring IBD Segments from SNP
Genotypes
ibdsegments Identity by Descent Probability in Pedigrees
ibdsim2 Simulation of Chromosomal Regions Shared by
Family Members
ibelief Belief Function Implementation
ibger Access the 'IBGE' Aggregate Data API from 'R'
ibkrcp R Client for the Interactive Brokers Client
Portal API
ibm Individual Based Models in R
ibmAcousticR Connect to Your 'IBM Acoustic' Data
ibmcraftr Toolkits to Develop Individual-Based Models in
Infectious Disease
ibmdbR IBM in-Database Analytics for R
ibmsunburst Generate Personality Insights Sunburst Diagrams
ibr Iterative Bias Reduction
ibs Integral of B-Spline Functions
ic.infer Inequality Constrained Inference in Linear
Normal Situations
ica Independent Component Analysis
ical 'iCalendar' Parsing
icardaFIGSr Subsetting using Focused Identification of the
Germplasm Strategy (FIGS)
icarus Calibrates and Reweights Units in Samples
iccCompare Comparison of Dependent Intraclass Correlation
Coefficients
iccCounts Intraclass Correlation Coefficient for Count
Data
iccTraj Estimates the Intraclass Correlation
Coefficient for Trajectory Data
iccbeta Multilevel Model Intraclass Correlation for
Slope Heterogeneity
iccde Computation of the Double-Entry Intraclass
Correlation
iccmult Intracluster Correlation Coefficient (ICC) in
Clustered Categorical Data
icd.data International Classifcation of Diseases (ICD)
Data
icdGLM EM by the Method of Weights for Incomplete
Categorical Data in Generlized Linear Models
icdcomorbid Mapping ICD Codes to Comorbidity
icdhelper Simple 'ICD-10' Code Descriptions
icdpicr 'ICD' Programs for Injury Categorization in R
icdpicr2 Categorize Injury Diagnosis Codes
icecdr Download Sea Ice Concentration Data from the
NSIDC Climate Data Record
icecream Print Debugging Made Sweeter
icenReg Regression Models for Interval Censored Data
icensBKL Accompanion to the Book on Interval Censoring
by Bogaerts, Komarek, and Lesaffre
icensmis Study Design and Data Analysis in the Presence
of Error-Prone Diagnostic Tests and
Self-Reported Outcomes
icertool Calculate and Plot ICER
icesAdvice Functions Related to ICES Advice
icesConnect Provides User Tokens for Access to ICES Web
Services
icesDatras DATRAS Trawl Survey Database Web Services
icesDatsu Functions to Interact with the ICES Data
Submission Utility (DATSU)
icesDatsuQC Run Quality Checks on Data Prior to Submission
to ICES
icesSAG Stock Assessment Graphs Database Web Services
icesSD Stock Database Web Services
icesTAF Functions to Support the ICES Transparent
Assessment Framework
icesVocab ICES Vocabularies Database Web Services
ichimoku Visualization and Tools for Ichimoku Kinko Hyo
Strategies
iclogcondist Log-Concave Distribution Estimation with
Interval-Censored Data
icmm Empirical Bayes Variable Selection via ICM/M
Algorithm
icmstate Interval Censored Multi-State Models
icomb Forecasting Hierarchical Time Series Using
Information Combination
icosa Global Triangular and Penta-Hexagonal Grids
Based on Tessellated Icosahedra
icpack Survival Analysis of Interval-Censored Data
icpsrdata Reproducible Data Retrieval from the ICPSR
Archive
icr Compute Krippendorff's Alpha
ictools Unified Tools for Classical and Bootstrap
Confidence Intervals
idar Individual Diversity-Area Relationships
idarps Datasets and Functions for the Class "Modelling
and Data Analysis for Pharmaceutical Sciences"
idbr R Interface to the US Census Bureau
International Data Base API
idcnrba Interactive Application for Analyzing
Representativeness and Nonresponse Bias
idealstan Robust Measurement with 'Stan'
ideamdb Easy Manipulation of IDEAM's Climatological
Data
ideanet Integrating Data Exchange and Analysis for
Networks ('ideanet')
idefix Efficient Designs for Discrete Choice
Experiments
idendr0 Interactive Dendrograms
ider Various Methods for Estimating Intrinsic
Dimension
idiffomix Integrated Differential Analysis of Multi Omics
Data using a Joint Mixture Model
idiogramFISH Shiny App. Idiograms with Marks and Karyotype
Indices
idiolect Forensic Authorship Analysis
idionomics Conduct Idionomic Analyses for Time Series
Modeling
idm Incremental Decomposition Methods
idmact Interpreting Differences Between Mean ACT
Scores
idmc Load and Wrangle IDMC Displacement Data
idopNetwork A Network Tool to Dissect Spatial Community
Ecology
idr Irreproducible Discovery Rate
ids Generate Random Identifiers
idx2r Convert Files to and from IDX Format to
Vectors, Matrices and Arrays
ie2misc Irucka Embry's Miscellaneous USGS Functions
ie2miscdata Irucka Embry's Miscellaneous USGS Data
Collection
ieTest Indirect Effects Testing Methods in Mediation
Analysis
ieeeround Functions to Set and Get the IEEE Rounding Mode
ieegio File IO for Intracranial Electroencephalography
iemisctext Irucka Embry's Miscellaneous Text Collection
ierd Inverted Exponentiated Rayleigh Distribution
Tools
ieugwasr Interface to the 'OpenGWAS' Database API
ifCNVR Isolation-Forest Based 'CNV' Detection from
'NGS' Data
ifaTools Toolkit for Item Factor Analysis with 'OpenMx'
ifctools Italian Fiscal Code ('Codice Fiscale')
Utilities
ife Autodiff for Influence Function Based Estimates
ifit Simulation-Based Fitting of Parametric Models
with Minimum Prior Information
ifo Client for the Ifo Institute Time Series
ifpd Indonesia Food Prices Data
ifs Iterated Function Systems
ig.degree.betweenness "Node+Edge Betweenness Community Detection
Algorithm for 'igraph' Objects"
ig.vancouver.2014.topcolour
Instagram 2014 Vancouver Top Colour Dataset
igcop Computational Tools for the IG and IGL Copula
Families
igfetchr Access the 'IG Trading REST API'
iglm Regression under Interference in Connected
Populations
iglu Interpreting Glucose Data from Continuous
Glucose Monitors
igoR Access the Intergovernmental Organizations
Database
igr Irish Grid Reference Utilities
igraph Network Analysis and Visualization
igraphdata A Collection of Network Data Sets for the
'igraph' Package
igraphinshiny Use 'shiny' to Demo 'igraph'
igraphtosonia Convert iGraph graps to SoNIA .son files
igraphwalshdata 'igraph' Datasets from Melanie Walsh
igrf International Geomagnetic Reference Field
ihclust Iterative Hierarchical Clustering (IHC)
iheatmapr Interactive, Complex Heatmaps
iheiddown For Writing Geneva Graduate Institute Documents
ihpdr Download Data from the International House
Price Database
ihsMW Clean and Harmonise 'Malawi Integrated
Household Survey' Data
iimi Identifying Infection with Machine Intelligence
ijtiff Comprehensive TIFF I/O with Full Support for
'ImageJ' TIFF Files
il.cbs.muni Utility Functions to Work with Israeli Central
Bureau of Statistics Municipal Data
ilabelled Simple Handling of Labelled Data
illuminaio Parsing Illumina Microarray Output Files
imabc Incremental Mixture Approximate Bayesian
Computation (IMABC)
image.CannyEdges Implementation of the Canny Edge Detector for
Images
image.ContourDetector Implementation of the Unsupervised Smooth
Contour Line Detection for Images
image.CornerDetectionF9
Find Corners in Digital Images with FAST-9
image.CornerDetectionHarris
Implementation of the Harris Corner Detection
for Images
image.LineSegmentDetector
Detect Line Segments in Images
image.Otsu Otsu's Image Segmentation Method
image.binarization Binarize Images for Enhancing Optical Character
Recognition
image.libfacedetection
Convolutional Neural Network for Face Detection
image2data Turn Images into Data Sets
imageData Aids in Processing and Plotting Data from a
Lemna-Tec Scananalyzer
imageRy Modify and Share Images
imagefluency Image Statistics Based on Processing Fluency
imagefx Extract Features from Images
imager Image Processing Library Based on 'CImg'
imagerExtra Extra Image Processing Library Based on
'imager'
imageseg Deep Learning Models for Image Segmentation
imageviewer Simple 'htmlwidgets' Image Viewer with WebGL
Brightness/Contrast
imaginarycss Tools for Studying Imaginary Cognitive Social
Structure
imaginator Simulate General Insurance Policies and Losses
imagine IMAGing engINEs, Tools for Application of Image
Filters to Data Matrices
imanr Identify the Racial Complex of Native Corns
from Mexico
imbalanceDatRel Relocated Data Oversampling for Imbalanced Data
Classification
imbibe A Pipe-Friendly Image Calculator
imcExperiment Mass Cytometry S4 Class Structure Pipeline for
Images
imdbapi Get Movie, Television Data from the 'imdb'
Database
imf.data An Interface to IMF (International Monetary
Fund) Data JSON API
imfapi Econdataverse 'IMF Data API' Client
imfweo Seamless Access to IMF World Economic Outlook
(WEO) Data
imgpalr Create Color Palettes from Images
imgrec An Interface for Image Recognition
iml Interpretable Machine Learning
immer Item Response Models for Multiple Ratings
immunarch Multi-Modal Immune Repertoire Analytics for
Immunotherapy and Vaccine Design in R
immunaut Machine Learning Immunogenicity and Vaccine
Response Analysis
immundata A Unified Data Layer for Large-Scale
Single-Cell, Spatial and Bulk Immunomics
immunogenetr A Comprehensive Toolkit for Clinical HLA
Informatics
imp4p Imputation for Proteomics
impARI Improving Permutation-Based All-Resolutions
Inference ('impARI')
impactflu Quantification of Population-Level Impact of
Vaccination
impactr Mechanical Loading Prediction Through
Accelerometer Data
impectR Access Data from the 'Impect' API
impermanentlosscalc Calculate Impermanent Loss in Automated Market
Maker (AMM) Liquidity Pools
impimp Imprecise Imputation for Statistical Matching
implicitExpansion Array Operations for Arrays of Mismatching
Sizes
implied Convert Between Bookmaker Odds and
Probabilities
implyr R Interface for Apache Impala
import An Import Mechanism for R
important Supervised Feature Selection
importinegi Download and Manage Open Data from INEGI
impower133 Reproduce IMpower133 Clinical Trial Results
imprecise101 Introduction to Imprecise Probabilities
impressionist.colors Impressionism's Color Palettes
imprinting Calculate Birth Year-Specific Probabilities of
Immune Imprinting to Influenza
impute impute: Imputation for microarray data
imputeFin Imputation of Financial Time Series with
Missing Values and/or Outliers
imputeGeneric Ease the Implementation of Imputation Methods
imputeLCMD A Collection of Methods for Left-Censored
Missing Data Imputation
imputeMissings Impute Missing Values in a Predictive Context
imputeMulti Imputation Methods for Multivariate Multinomial
Data
imputeR A General Multivariate Imputation Framework
imputeREE Impute Missing Rare Earth Element Data in
Zircon
imputeTS Time Series Missing Value Imputation
imputeTestbench Test Bench for the Comparison of Imputation
Methods
imsig Immune Cell Gene Signatures for Profiling the
Microenvironment of Solid Tumours
imt Impact Measurement Toolkit
imuf Estimate Orientation of an Inertial Measurement
Unit
imv Model Comparison via the 'InterModel Vigorish'
('IMV')
inDAGO A GUI for Dual and Bulk RNA-Sequencing Analysis
inTextSummaryTable Creation of in-Text Summary Table
inaparc Initialization Algorithms for Partitioning
Cluster Analysis
inbreedR Analysing Inbreeding Based on Genetic Markers
incR Analysis of Incubation Data
inca Integer Calibration
incase Pipe-Friendly Vector Replacement with Case
Statements
incgraph Incremental Graphlet Counting for Network
Optimisation
incidence Compute, Handle, Plot and Model Incidence of
Dated Events
incidence2 Compute, Handle and Plot Incidence of Dated
Events
incidental Implements Empirical Bayes Incidence Curves
incidentally Generates Incidence Matrices and Bipartite
Graphs
inctools Incidence Estimation Tools
incubate Parametric Time-to-Event Analysis with Variable
Incubation Phases
indelmiss Insertion Deletion Analysis While Accounting
for Possible Missing Data
independenceWeights Estimates Weights for Confounding Control for
Continuous-Valued Exposures
index0 Zero-Based Indexing in R
indexr A Thoughtful Saver of Results
indexthis Quick Indexation
india Influence Diagnostics in Statistical Models
indicspecies Relationship Between Species and Groups of
Sites
indiedown Individual R Markdown Templates
indirect Elicitation of Independent Conditional Means
Priors for Generalised Linear Models
indonesiaFootballScoutR
Tools for Football Player Scouting in Indonesia
industRial Data, Functions and Support Materials from the
Book "industRial Data Science"
ineAtlas Access to Spanish Household Income Distribution
Atlas Data
ineapir Obtaining Data Published by the National
Statistics Institute
inecolr Modeling and Plotting for Ecologist
ineptr2 Wrapper for Statistics Portugal API
ineq Measuring Inequality, Concentration, and
Poverty
ineq.2d Two-Dimensional Decomposition of the Theil
Index and the Squared Coefficient of Variation
ineqJD Inequality Joint Decomposition
inequality Inequality Measurement, Decomposition, and
Poverty Analysis
inequantiles Quantile-Based Inequality Indicators for
Complex Survey Data
inet Performing Inference on Networks with
Regularization
infectiousR Access Infectious and Epidemiological Data via
'disease.sh API'
infer Tidy Statistical Inference
inferCSN Inferring Cell-Specific Gene Regulatory Network
inferMM Variance-Aware Michaelis-Menten Estimation and
Inference
infercnv Infer Copy Number Variation from Single-Cell
RNA-Seq Data
inferference Methods for Causal Inference with Interference
inferr Inferential Statistics
infiltrodiscR Minidisc Infiltrometer Data Management
infix Basic Infix Binary Operators
infixit Helpful Additional Infix Functions
inflateR Inflation Adjustment for Historical Currency
Values
inflationkit Inflation Decomposition, Core Measures, and
Trend Estimation
inflection Finds the Inflection Point of a Curve
influence.ME Tools for Detecting Influential Data in Mixed
Effects Models
influence.SEM Case Influence in Structural Equation Models
influenceAUC Identify Influential Observations in Binary
Classification
influenceR Software Tools to Quantify Structural
Importance of Nodes in a Network
influential Identification and Classification of the Most
Influential Nodes
influxdbr R Interface to InfluxDB
infocausality Information-Theoretic Measure of Causality
infoelectoral Download Spanish Election Results
informativeSCI Informative Simultaneous Confidence Intervals
infotest Information Matrix Test for Regression Models
infotheo Information-Theoretic Measures
infoxtr Information-Theoretic Measures for Revealing
Variable Interactions
ingredients Effects and Importances of Model Ingredients
ini Read and Write '.ini' Files
injectoR R Dependency Injection
injurytools A Toolkit for Sports Injury and Illness Data
Analysis
inkaR Download and Analyze Spatial Development Data
from 'INKAR'
inlabru Bayesian Latent Gaussian Modelling using INLA
and Extensions
inlamemi Missing Data and Measurement Error Modelling in
INLA
inlcolor Color Schemes for the USGS Idaho National
Laboratory Project Office
inline Functions to Inline C, C++, Fortran Function
Calls from R
inlinedocs Convert Inline Comments to Documentation
inlpubs USGS INL Project Office Publications
innsight Get the Insights of Your Neural Network
ino Initialization of Numerical Optimization
inops Infix Operators for Detection, Subsetting and
Replacement
inough Inattention Detection Pipeline for
Psychophysical Tasks
inpdfr Analyse Text Documents Using Ecological Tools
inphr Statistical Inference for Persistence Homology
Data
inplace In-place Operators for R
insane INsulin Secretion ANalysEr
insect Informatic Sequence Classification Trees
insee Tools to Easily Download Data from INSEE BDM
Database
insetplot Inset Plots for Spatial Data Visualization
inshiny Compact Inline Widgets for 'shiny' Apps
insight Easy Access to Model Information for Various
Model Objects
inspector Validation of Arguments and Objects in
User-Defined Functions
instaR Access to Instagram API via R
instagramadsR Access to Instagram Ads via the 'Windsor.ai'
API
install.load Check, Install and Load CRAN Packages
installr Using R to Install Stuff on Windows OS (Such
As: R, 'Rtools', 'RStudio', 'Git', and More!)
instantiate Pre-Compiled 'CmdStan' Models in R Packages
insulin.secretion Insulin Secretion Rate Deconvolution
insuranceData A Collection of Insurance Datasets Useful in
Risk Classification in Non-life Insurance.
insurancerating Actuarial Tools for Insurance Pricing Models
int3ract Plotting Two- and Three-Way Interactions
intRegGOF Integrated Regression Goodness of Fit
intRinsic Likelihood-Based Intrinsic Dimension Estimators
intRvals Analysis of Time-Ordered Event Data with Missed
Observations
intSDM Reproducible Integrated Species Distribution
Models Across Norway using 'INLA'
intamap Procedures for Automated Interpolation
intamapInteractive Interactive Add-on Functionality for 'intamap'
intccr Semiparametric Competing Risks Regression under
Interval Censoring
integIRTy Integrating Multiple Modalities of High
Throughput Assays Using Item Response Theory
integr An Implementation of Interaction Graphs of
Aleks Jakulin
integrity Assessing the Integrity and Trustworthiness of
Clinical Trials Data
inteli Interval Estimation by Likelihood Method
intendo A Group of Fun Datasets of Various Sizes and
Differing Levels of Quality
intensegRid R Wrapper for the Carbon Intensity API
intensitynet Intensity Analysis of Spatial Point Patterns on
Complex Networks
inteq Numerical Solution of Integral Equations
interactionR Full Reporting of Interaction Analyses
interactionRCS Calculate Estimates in Models with Interaction
interactionTest Calculates Critical Test Statistics to Control
False Discovery Rates in Marginal Effects Plots
interactions Comprehensive, User-Friendly Toolkit for
Probing Interactions
interca Multiple Correspondence Analysis Based on
Interpretive Coordinates
interep Interaction Analysis of Repeated Measure Data
interface Runtime Type System
interfacer Define and Enforce Contracts for Dataframes as
Function Parameters
interflex Estimation, Diagnostics and Visualization of
Conditional Marginal Effects
intergraph Coercion Routines for Network Data Objects
interim Scheduling Interim Analyses in Clinical Trials
interimApp App for Scheduling Interim Analyses in Clinical
Trials
interleave Converts Tabular Data to Interleaved Vectors
interlineaR Importing Interlinearized Corpora and
Dictionaries as Produced by Descriptive
Linguistics Software
interp Interpolation Methods
interplot Plot the Effects of Variables in Interaction
Terms
interpolators Some Interpolation Methods
interpret Fit Interpretable Machine Learning Models
interpretCI Estimate the Confidence Interval and Interpret
Step by Step
interpretR Binary Classifier and Regression Model
Interpretation Functions
interprocess Mutexes, Semaphores, and Message Queues
inters Flexible Tools for Estimating Interactions
interval Weighted Logrank Tests and NPMLE for Interval
Censored Data
intervalaverage Time-Weighted Averaging for Interval Data
intervalpsych Analyzing Interval Data in Psychometrics
intervals Tools for Working with Points and Intervals
intervcomp Hypothesis Testing Using the Overlapping
Interval Estimates
inti Tools and Statistical Procedures in Plant
Science
intkrige A Numerical Implementation of Interval-Valued
Kriging
intmap Ordered Containers with Integer Keys
intmed Mediation Analysis using Interventional Effects
intradayModel Modeling and Forecasting Financial Intraday
Signals
intrinsicDimension Intrinsic Dimension Estimation
intrinsicFRP An R Package for Factor Model Asset Pricing
intrinsicKappa Sample Size Planning Based on Intrinsic Kappa
Value
intrval Relational Operators for Intervals
intsurv Integrative Survival Modeling
intsvy International Assessment Data Manager
inum Interval and Enum-Type Representation of
Vectors
invGauss Threshold Regression that Fits the (Randomized
Drift) Inverse Gaussian Distribution to
Survival Data
invacost Analyse Biological Invasion Costs with the
'InvaCost' Database
invctr Infix Functions For Vector Operations
inventorize Inventory Analytics, Pricing and Markdowns
inverseRegex Reverse Engineers Regular Expression Patterns
for R Objects
invertiforms Invertible Transforms for Matrices
investr Inverse Estimation/Calibration Functions
invgamma The Inverse Gamma Distribution
invgamstochvol Obtains the Log Likelihood for an Inverse Gamma
Stochastic Volatility Model
invitroTKdata In Vitro Toxicokinetic Data Processed with the
'invitroTKstats' Pipeline
invitroTKstats In Vitro Toxicokinetic Data Processing and
Analysis Pipeline
invivoPKfit Fits Toxicokinetic Models to In Vivo PK Data
Sets
io A Unified Framework for Input-Output Operations
in R
ioanalysis Input Output Analysis
ioncopy Calling Copy Number Alterations in Amplicon
Sequencing Data
ionet Network Analysis for Input-Output Tables
iotables Reproducible Input–Output Economics Analysis,
Economic and Environmental Impact Assessment
with Empirical Data
iotarelr Iota Inter Coder Reliability for Content
Analysis
iotools I/O Tools for Streaming
ip2location Lookup for IP Address Information
ip2location.io Batch IP Data Retrieval and Storage Using
'IP2Location.io'
ip2locationio Lookup Geolocation and Proxy Information using
'IP2Location.io' API
ip2proxy Lookup for IP Address Proxy Information
ip2whois Lookup 'WHOIS' Information for a Particular
Domain
ipADMIXTURE Iterative Pruning Population Admixture
Inference Framework
ipa Convert Between Phonetic Alphabets
ipaddress Data Analysis for IP Addresses and Networks
ipanema Read Data from 'LimeSurvey'
ipbase Client for the 'ipbase.com' IP Geolocation API
ipc Tools for Message Passing Between Processes
ipd Inference on Predicted Data
ipdw Spatial Interpolation by Inverse Path Distance
Weighting
ipeadatar API Wrapper for 'Ipeadata'
ipeaplot Add Ipea Editorial Standards to 'ggplot2'
Graphics
iperform Time Series Performance
ipeval Evaluation of Interventional Predictions
ipflasso Integrative Lasso with Penalty Factors
ipfp Fast Implementation of the Iterative
Proportional Fitting Procedure in C
ipfr List Balancing for Reweighting and Population
Synthesis
ipft Indoor Positioning Fingerprinting Toolset
ipgeolocation Client for the 'IPGeolocation.io IP Location
API'
ipkg Install R Packages or Download File from GitHub
via the Proxy Site
iplookupapi Client for the 'iplookupapi.com' IP Lookup API
iplots iPlots - Interactive Graphics for R
ipmr Integral Projection Models
ipolygrowth Individual Growth Curve Parameter Calculation
using Polynomial Functions
ipr Iterative Proportional Repartition Algorithm
ipred Improved Predictors
iprior Regression Modelling using I-Priors
ips Interfaces to Phylogenetic Software in R
ipsRdbs Introduction to Probability, Statistics and R
for Data-Based Sciences
ipsecr Spatially Explicit Capture-Recapture by Inverse
Prediction
ipsfs Intuitionistic, Pythagorean, and Spherical
Fuzzy Similarity Measure
ipumsr An R Interface for Downloading, Reading, and
Handling IPUMS Data
ipw Estimate Inverse Probability Weights
ipwCoxCSV Inverse Probability Weighted Cox Model with
Corrected Sandwich Variance
ipwErrorY Inverse Probability Weighted Estimation of
Average Treatment Effect with Misclassified
Binary Outcome
iq Protein Quantification in Mass
Spectrometry-Based Proteomics
ir Functions to Handle and Preprocess Infrared
Spectra
irace Iterated Racing for Automatic Algorithm
Configuration
iraceplot Plots for Visualizing the Data Produced by the
'irace' Package
irboost Iteratively Reweighted Boosting for Robust
Analysis
ircor Correlation Coefficients for Information
Retrieval
irg Instantaneous Rate of Green Up
irlba Fast Truncated Singular Value Decomposition and
Principal Components Analysis for Large Dense
and Sparse Matrices
irls Generalised Linear Models via Iteratively
Reweighted Least Squares
ironseed Improved Random Number Generator Seeding
irpfR Access to the Great Numbers of Brazilian
Individual Income Tax (IRPF)
irr Various Coefficients of Interrater Reliability
and Agreement
irrCAC Computing the Extent of Agreement among Raters
with Chance-Corrected Agreement Coefficient
(CAC)
irrICC Intraclass Correlations for Quantifying
Inter-Rater Reliability
irrNA Coefficients of Interrater Reliability –
Generalized for Randomly Incomplete Datasets
irt Item Response Theory and Computerized Adaptive
Testing Functions
irtDemo Item Response Theory Demo Collection
irtGUI Item Response Theory Analysis with a Graphic
User Interface
irtQ Unidimensional Item Response Theory Modeling
irtawsi Items Response Theory Analysis with Steps and
Interpretation
irtbem2pl Marginalized Bayesian Item Parameter
Estimation, 2pl Model IRT
irtoys A Collection of Functions Related to Item
Response Theory (IRT)
irtpwr Power Analysis for IRT Models Using the Wald,
LR, Score, and Gradient Statistics
irtrees Estimation of Tree-Based Item Response Models
irtreliability Item Response Theory Reliability
irtsim Monte Carlo Simulation-Based Sample-Size
Planning for Item Response Theory
isa2 The Iterative Signature Algorithm
isard Overflow Data for Quantitative Peace Science
Research
isatabr Implementation for the ISA Abstract Model
isdals Datasets for Introduction to Statistical Data
Analysis for the Life Sciences
isdparser Parse 'NOAA' Integrated Surface Data Files
isingLenzMC Monte Carlo for Classical Ising Model
island Stochastic Island Biogeography Theory Made Easy
islandcodes Reference Data and Helpers for Small Island
States and Territories
islasso The Induced Smoothed Lasso
ismev An Introduction to Statistical Modeling of
Extreme Values
ismtchile Calculating Socio Material Territorial Index
isni Index of Local Sensitivity to Nonignorability
isnullptr Check if an 'externalptr' is a Null Pointer
iso8601 Working with ISO8601 Dates and Times
isoSurv Isotonic Regression on Survival Analysis
isoWater Discovery, Retrieval, and Analysis of Water
Isotope Data
isoband Generate Isolines and Isobands from Regularly
Spaced Elevation Grids
isoboost Isotonic Boosting Classification Rules
isobxr Stable Isotope Box Modelling in R
isocalcR Isotope Calculations in R
isocat Isotope Origin Clustering and Assignment Tools
isocir Isotonic Inference for Circular Data
isocountry ISO 3166-1 Country Codes
isocubes Voxel Data Visualization with Isometric Cubes
isodistrreg Isotonic Distributional Regression (IDR)
isogeochem Tools for Stable Isotope Geochemistry
isokernel Isolation Kernel
isoniche Calculating Density-Independent Niche Breadth
Indices from Abundance Data
isoorbi Process Orbitrap Isotopocule Data
isopam Clustering of Sites with Species Data
isopleuros Ternary Plots
isotone Active Set and Generalized PAVA for Isotone
Optimization
isotonic.pen Penalized Isotonic Regression in one and two
dimensions
isotree Isolation-Based Outlier Detection
ispd Incomplete Split-Plot Designs
ispdata Access Data from the Public Security Institute
of the State of Rio De Janeiro
istacr Obtaining Open Data from Instituto Canario De
Estadistica (ISTAC) API
istat Download and Manipulate Data from Istat
istatR Interface to the Italian National Institute of
Statistics ('ISTAT') API
isva Independent Surrogate Variable Analysis
italy The Italian Survey on Household and Wealth,
2008 and 2010
itan Item Analysis for Multiple Choice Tests
itcSegment Individual Tree Crowns Segmentation
itdr Integral Transformation Methods for SDR in
Regression
itemanalysis Classical Test Theory Item Analysis
iterLap Approximate Probability Densities by Iterated
Laplace Approximations
iteratoR Print Loop Iterations at Exponentially
Disparate Intervals
iterators Provides Iterator Construct
iterors Fast, Compact Iterators and Tools
iterpc Efficient Iterator for Permutations and
Combinations
itertools Iterator Tools
itertools2 itertools2: Functions creating iterators for
efficient looping
itmsa Information-Theoretic Measures for Spatial
Association
itol.toolkit Helper Functions for 'Interactive Tree Of Life'
itp The Interpolate, Truncate, Project (ITP)
Root-Finding Algorithm
itraxR Itrax Data Analysis Tools
itrimhoch Improved Trimmed Weighted Hochberg Procedures
and Sample Size Optimization
its.analysis Running Interrupted Time Series Analysis
itsadug Interpreting Time Series and Autocorrelated
Data Using GAMMs
itscalledsoccer American Soccer Analysis API Client
itsmr Time Series Analysis Using the Innovations
Algorithm
iucnr IUCN Red List Data
iv.sensemakr Sensitivity Analysis Tools for Instrumental
Variable Estimates
ivDiag Estimation and Diagnostic Tools for
Instrumental Variables Designs
ivaBSS Tools for Independent Vector Analysis
ivcheck Tests for Instrumental Variable Validity
ivd Individual Variance Detection
ivdesc Profiling Compliers and Non-Compliers for
Instrumental Variable Analysis
ivdoctr Ensures Mutually Consistent Beliefs When Using
IVs
ivgets General to Specific Modeling and Indicator
Saturation in 2SLS Models
ivmodel Statistical Inference and Sensitivity Analysis
for Instrumental Variables Model
ivmte Instrumental Variables: Extrapolation by
Marginal Treatment Effects
ivo.table Nicely Formatted Contingency Tables and
Frequency Tables
ivolcano Interactive Volcano Plot
ivreg Instrumental-Variables Regression by '2SLS',
'2SM', or '2SMM', with Diagnostics
ivs Interval Vectors
ivtools Instrumental Variables
ivx Robust Econometric Inference
iwaqr Irrigation Water Quality Assessment and
Visualizations
ixplorer Easy DataOps for R Users
ixsurface Interactive 3D Surface Plots for Multi-Factor
Interaction Visualization
izmir R Wrapper for Izmir Municipality Open Data
Portal
jSDM Joint Species Distribution Models
jScore Calculates the j-Score Between Two Clustering
Assignments
jaatha Simulation-Based Maximum Likelihood Parameter
Estimation
jab.adverse.reactions Possible Adverse Events/Reactions from the
Vaccinations/Experimental Gene Therapies
jaccard Testing Similarity Between Binary Datasets
using Jaccard/Tanimoto Coefficients
jackalope A Swift, Versatile Phylogenomic and
High-Throughput Sequencing Simulator
jackknifeR Delete-d Jackknife for Point and Interval
Estimation
jackstrap Correcting Nonparametric Frontier Measurements
for Outliers
jackstraw Statistical Inference for Unsupervised Learning
jacobi Jacobi Theta Functions and Related Functions
jacpop Jaccard Index for Population Structure
Identification
jadeLizardOptions Trading Jade Lizard Option Strategies
jage Estimation of Developmental Age
jaggR Supporting Files and Functions for the Book
Bayesian Modelling with 'JAGS'
jagsUI A Wrapper Around 'rjags' to Streamline 'JAGS'
Analyses
jagshelper Extracting and Visualizing Output from 'jagsUI'
jagstargets Targets for JAGS Pipelines
jalcal Convert Between Jalaali (Persian or Solar
Hijri) and Gregorian Calendar Dates
jamba Just Analysis Methods Base
janeaustenr Jane Austen's Complete Novels
janitor Simple Tools for Examining and Cleaning Dirty
Data
janus Optimized Recommending System Based on
'tensorflow'
janusplot Asymmetric Smoothed-Association Matrices via
GAM Fits
japanstat Tools for Easy Use of 'e-Stat' API
jarbes Just a Rather Bayesian Evidence Synthesis
javateak Javanese Teak Above Ground Biomass Estimation
jcalendaR Interconversion Between the Japanese Calendar
System and the Western Calendar
jcext Extended Classification of Weather Types
jcolors Colors Palettes for R and 'ggplot2', Additional
Themes for 'ggplot2'
jcp Joint Change Point Detection
jdenticon A Wrapper for the Node.js 'Jdenticon' Library
jds.rmd R Markdown Templates for Journal of Data
Science
jellyfisher Visualize Spatiotemporal Tumor Evolution with
Jellyfish Plots
jenga Fast Extrapolation of Time Features using
K-Nearest Neighbors
jentre Toolkit for the 'Entrez' API
jetpack A Friendly Package Manager
jetty Execute R in a 'Docker' Context
jewel Graphical Models Estimation from Multiple
Sources
jfa Statistical Methods for Auditing
jgd JSON Graphics Device
jgsbook Package of the German Book "Statistik mit R und
RStudio" by Joerg grosse Schlarmann
jinjar Template Engine Inspired by 'Jinja'
jipApprox Approximate Inclusion Probabilities for Survey
Sampling
jjb Balamuta Miscellaneous
jlmerclusterperm Cluster-Based Permutation Analysis for Densely
Sampled Time Data
jlview Zero-Copy Julia to R Array Bridge via ALTREP
jmBIG Joint Longitudinal and Survival Model for Big
Data
jmSurface Semi-Parametric Association Surfaces for Joint
Longitudinal-Survival Models
jmastats Download Weather Data from Japan Meteorological
Agency Website
jmatrix Read from/Write to Disk Matrices with any Data
Type in a Binary Format
jmcm Joint Mean-Covariance Models using 'Armadillo'
and S4
jmdem Fitting Joint Mean and Dispersion Effects
Models
jmetrik Tools for Interacting with 'jMetrik'
jmotif Time Series Analysis Toolkit Based on Symbolic
Aggregate Discretization, i.e. SAX
jmuOutlier Permutation Tests for Nonparametric Statistics
jmv The 'jamovi' Analyses
jmvReadWrite Read and Write 'jamovi' Files ('.omv')
jmvconnect Connect to the 'jamovi' Statistical Spreadsheet
jmvcore Dependencies for the 'jamovi' Framework
job Run Code as an RStudio Job - Free Your Console
jobqueue Run Interruptible Code Asynchronously
joinXL Perform Joins or Minus Queries on 'Excel' Files
joineR Joint Modelling of Repeated Measurements and
Time-to-Event Data
joineRML Joint Modelling of Multivariate Longitudinal
Data and Time-to-Event Outcomes
joinet Penalised Multivariate Regression
('Multi-Target Learning')
joinless Exploratory Analysis of Relationships Between
Variables
joinpointR Tidy Tools for Joinpoint Regression Models
joinspy Diagnostic Tools for Data Frame Joins
joint.Cox Joint Frailty-Copula Models for Tumour
Progression and Death in Meta-Analysis
jointCalib A Joint Calibration of Totals and Quantiles
jointCompRisk Joint Inference for Competing Risks Data Using
Multiple Endpoints
jointDiag Joint Approximate Diagonalization of a Set of
Square Matrices
jointMeanCov Joint Mean and Covariance Estimation for
Matrix-Variate Data
jointNmix Joint N-Mixture Models for Site-Associated
Species
jointPm Risk Estimation Using the Joint Probability
Method
jointVIP Prioritize Variables with Joint Variable
Importance Plot in Observational Study Design
jointest Multivariate Testing Through Joint
Resampling-Based Tests
jointseg Joint Segmentation of Multivariate (Copy
Number) Signals
joker Probability Distributions and Parameter
Estimation
jollofR Small Area Population Estimation by
Demographics
jomo Multilevel Joint Modelling Multiple Imputation
jordan A Suite of Routines for Working with Jordan
Algebras
josaplay Add Josa Based on Previous Letter in Korean
jose JavaScript Object Signing and Encryption
jot Jot Down Values for Later
journalR Formatting Tools for Scientific Journal Writing
journalabbr Journal Abbreviations for BibTeX Documents
joyn Tool for Diagnosis of Tables Joins and
Complementary Join Features
jpcity Read and Convert Japanese Municipality Codes
jpeg Read and write JPEG images
jpgrid Functions for the Grid Square Codes in Japan
jpinfect Acquiring and Processing Data from Japan
Institute for Health Security
jpmesh Utilities for Japanese Mesh Code
jpstat Tools for Easy Use of 'e-Stat', 'RESAS' API,
Etc
jqbr 'jQuery QueryBuilder' Input for 'Shiny'
jqr Client for 'jq', a 'JSON' Processor
jquerylib Obtain 'jQuery' as an HTML Dependency Object
jrSiCKLSNMF Multimodal Single-Cell Omics Dimensionality
Reduction
jrc Exchange Commands Between R and 'JavaScript'
jrich Jack-Knife Support for Evolutionary
Distinctiveness Indices I and W
jrt Item Response Theory Modeling and Scoring for
Judgment Data
jrvFinance Basic Finance; NPV/IRR/Annuities/Bond-Pricing;
Black Scholes
js Tools for Working with JavaScript in R
jsTree Create Interactive Trees with the 'jQuery'
'jsTree' Plugin
jsTreeR A Wrapper of the JavaScript Library 'jsTree'
jsdtools Jensen-Shannon Divergence Estimation,
Confidence Intervals, and Distribution Plots
jshintr Lint 'JavaScript' Files
jskm Kaplan-Meier Plot with 'ggplot2'
jsmodule 'RStudio' Addins and 'Shiny' Modules for
Medical Research
json2aRgs Parse Parameters Inside a Docker Container
json64 A 'Base64' Encode/Decode Package with Support
for JSON Output/Input and UTF-8
jsonNormalize Normalization of 'JSON' Strings
jsonify Convert Between 'R' Objects and Javascript
Object Notation (JSON)
jsonld JSON for Linking Data
jsonlite A Simple and Robust JSON Parser and Generator
for R
jsonstat Interface to 'JSON-stat'
jsonvalidate Validate 'JSON' Schema
jstable Create Tables from Different Types of
Regression
jstager Retrieve Information Published on J-STAGE
jsutils 'JavaScript' Utilities for 'R'
jtdm Joint Modelling of Functional Traits
jti Junction Tree Inference
jtools Analysis and Presentation of Social Scientific
Data
jubilee Forecasting Long-Term Growth of the U.S. Stock
Market and Business Cycles
juicedown 'juice' + 'markdown': Convert 'R Markdown' into
'HTML' with Inline Styles
juicr Automated and Manual Extraction of Numerical
Data from Scientific Images
juicyjuice Inline CSS Properties into HTML Tags Using
'juice'
jumble A Discrete Colour Palette
jumps Hodrick-Prescott Filter with Jumps
junco Create Common Tables and Listings Used in
Clinical Trials
junctions The Breakdown of Genomic Ancestry Blocks in
Hybrid Lineages
just.install Very Simple Function to Install Packages
without Attaching
justifier Human and Machine-Readable Justifications and
Justified Decisions Based on 'YAML'
jvcoords Principal Component Analysis (PCA) and
Whitening
k5 Kiernan Nicholls Miscellaneous
kDGLM Bayesian Analysis of Dynamic Generalized Linear
Models
kNNvs k Nearest Neighbors with Grid Search Variable
Selection
kSamples K-Sample Rank Tests and their Combinations
kStatistics Unbiased Estimators for Cumulant Products and
Faa Di Bruno's Formula
kableExtra Construct Complex Table with 'kable' and Pipe
Syntax
kader Kernel Adaptive Density Estimation and
Regression
kaigiroku Programmatic Access to the API for Japanese
Diet Proceedings
kairos Analysis of Chronological Patterns from
Archaeological Count Data
kalmanfilter Kalman Filter
kamila Methods for Clustering Mixed-Type Data
kangar00 Kernel Approaches for Nonlinear Genetic
Association Regression
kanjistat A Statistical Framework for the Analysis of
Japanese Kanji Characters
kanova Quasi Analysis of Variance for K-Functions
kaos Encoding of Sequences Based on Frequency Matrix
Chaos Game Representation
kaphom Test the Homogeneity of Kappa Statistics
kappaGold Agreement of Nominal Scale Raters (with a Gold
Standard)
kappaSize Sample Size Estimation Functions for Studies of
Interobserver Agreement
kappalab Non-Additive Measure and Integral Manipulation
Functions
karaoke Remove Vocals from a Song
kardl Make Symmetric and Asymmetric ARDL Estimations
karlen Real-Time PCR Data Sets by Karlen et al. (2007)
karyoploteR Plot customizable linear genomes displaying
arbitrary data
karyotapR DNA Copy Number Analysis for Genome-Wide
Tapestri Panels
katex Rendering Math to HTML, 'MathML', or
R-Documentation Format
kayadata Kaya Identity Data for Nations and Regions
kazaam Tools for Tall Distributed Matrices
kbal Kernel Balancing
kcmeans Conditional Expectation Function Estimation
with K-Conditional-Means
kcpRS Kernel Change Point Detection on the Running
Statistics
kde1d Univariate Kernel Density Estimation
kdecopula Kernel Smoothing for Bivariate Copula Densities
kdensity Kernel Density Estimation with Parametric
Starts and Asymmetric Kernels
kdevine Multivariate Kernel Density Estimation with
Vine Copulas
kdist K-Distribution and Weibull Paper
kdml Kernel Distance Metric Learning for Mixed-Type
Data
kdps Kinship Decouple and Phenotype Selection (KDPS)
kdry K's "Don't Repeat Yourself"-Collection
kedd Kernel Estimator and Bandwidth Selection for
Density and Its Derivatives
keep Arrays with Better Control over Dimension
Dropping
kehra Collect, Assemble and Model Air Pollution,
Weather and Health Data
kelvin Calculate Solutions to the Kelvin Differential
Equation using Bessel Functions
kendallRandomWalks Simulate and Visualize Kendall Random Walks and
Related Distributions
kendallknight Efficient Implementation of Kendall's
Correlation Coefficient Computation
kequate The Kernel Method of Test Equating
kerDAA New Kernel-Based Test for Differential
Association Analysis
kerSeg New Kernel-Based Change-Point Detection
kerTests Generalized Kernel Two-Sample Tests
keras R Interface to 'Keras'
keras3 R Interface to 'Keras'
kerasnip A Bridge Between 'keras' and 'tidymodels'
kerdiest Nonparametric Kernel Estimation of Distribution
Function
kergp Gaussian Process Laboratory
kerndwd Distance Weighted Discrimination (DWD) and
Kernel Methods
kernelFactory Kernel Factory: An Ensemble of Kernel Machines
kernelPhil Kernel Smoothing Tools for Philology and
Historical Dialectology
kernelboot Smoothed Bootstrap and Random Generation from
Kernel Densities
kernelshap Kernel SHAP
kernhaz Kernel Estimation of Hazard Function in
Survival Analysis
kernlab Kernel-Based Machine Learning Lab
kernopt Estimating Count Data Distributions with
Discrete Optimal Symmetric Kernel
kernreg Nadaraya-Watson Kernel Regression
kernscr Kernel Machine Score Test for Semi-Competing
Risks
kernstadapt Adaptive Kernel Estimators for Point Process
Intensities on Linear Networks
kerntools Kernel Functions and Tools for Machine Learning
Applications
kesernetwork Visualization of the KESER Network
keyATM Keyword Assisted Topic Models
keyclust A Model for Semi-Supervised Keyword Extraction
from Word Embedding Models
keyed Explicit Key Assumptions for Flat-File Data
keyholder Store Data About Rows
keylist Lightweight List Extensions that Enforce Unique
Keys
keyperm Keyword Analysis Using Permutation Tests
keyplayer Locating Key Players in Social Networks
keypress Wait for a Key Press in a Terminal
keyring Access the System Credential Store from R
keyringr Decrypt Passwords from Gnome Keyring, Windows
Data Protection API and macOS Keychain
keys Keyboard Shortcuts for 'shiny'
kfa K-Fold Cross Validation for Factor Analysis
kfda Kernel Fisher Discriminant Analysis
kfigr Integrated Code Chunk Anchoring and Referencing
for R Markdown Documents
kfino Kalman Filter for Impulse Noised Outliers
kfre Kidney Failure Risk Equation (KFRE) Tools
kgc Koeppen-Geiger Climatic Zones
kgen A Tool for Calculating Stoichiometric
Equilibrium Constants (Ks) for Seawater
kgp 1000 Genomes Project Metadata
kgrams Classical k-gram Language Models
kgraph Knowledge Graphs Constructions and
Visualizations
kgschart KGS Rank Graph Parser
khaos Bayesian Sparse Polynomial Chaos Expansion
khroma Colour Schemes for Scientific Data
Visualization
kidney.epi Kidney-Related Functions for Clinical and
Epidemiological Research
kidsides Download, Cache, and Connect to KidSIDES
kim A Toolkit for Behavioral Scientists
kimfilter Kim Filter
kimisc Kirill's Miscellaneous Functions
kin.cohort Analysis of Kin-Cohort Studies
kindisperse Simulate and Estimate Close-Kin Dispersal
Kernels
kindling Higher-Level Interface of 'torch' Package to
Auto-Train Neural Networks
kinematics Studying Sampled Trajectories
kinesis 'shiny' Applications for the 'tesselle'
Packages
kinship2 Pedigree Functions
kirby21.base Example Data from the Multi-Modal MRI
'Reproducibility' Resource
kirby21.fmri Example Functional Imaging Data from the
Multi-Modal MRI 'Reproducibility' Resource
kirby21.t1 Example T1 Structural Data from the Multi-Modal
MRI 'Reproducibility' Resource
kisopenapi Korea Investment & Securities (KIS) Open
Trading API
kissmig a Keep It Simple Species Migration Model
kit Data Manipulation Functions Implemented in C
kitagawa Spectral Response of Water Wells to Harmonic
Strain and Pressure Signals
kitesquare Visualize Contingency Tables Using Kite-Square
Plots
kiwisR A Wrapper for Querying KISTERS 'WISKI'
Databases via the 'KiWIS' API
kkmeans Fast Implementations of Kernel K-Means
kknn Weighted k-Nearest Neighbors
kko Kernel Knockoffs Selection for Nonparametric
Additive Models
klaR Classification and Visualization
klassR Classifications for Statistics Norway
klausuR Multiple Choice Test Evaluation
kldest Sample-Based Estimation of Kullback-Leibler
Divergence
kldtools Kullback-Leibler Divergence and Other Tools to
Analyze Frequencies
klineR Candlestick Pattern Detection and Stock
Screening
klovan Geostatistics Methods and Klovan Data
klsh Blocking for Record Linkage
klustR D3 Dynamic Cluster Visualizations
km.ci Confidence Intervals for the Kaplan-Meier
Estimator
kmBlock k-Means Like Blockmodeling of One-Mode and
Linked Networks
kmc Kaplan-Meier Estimator with Constraints for
Right Censored Data -- a Recursive
Computational Algorithm
kmeRtone Multi-Purpose and Flexible k-Meric Enrichment
Analysis Software
kmed Distance-Based k-Medoids
kmer Fast K-Mer Counting and Clustering for
Biological Sequence Analysis
kmi Kaplan-Meier Multiple Imputation for the
Analysis of Cumulative Incidence Functions in
the Competing Risks Setting
kmodR K-Means with Simultaneous Outlier Detection
knfi Analysis of Korean National Forest Inventory
Database
knitcitations Citations for 'Knitr' Markdown Files
knitr A General-Purpose Package for Dynamic Report
Generation in R
knitrBootstrap 'knitr' Bootstrap Framework
knitrProgressBar Provides Progress Bars in 'knitr'
knitrdata Data Language Engine for 'knitr' / 'rmarkdown'
knitxl Generates a Spreadsheet Report from an
'rmarkdown' File
knn.covertree An Accurate kNN Implementation with Multiple
Distance Measures
knnmi k-Nearest Neighbor Mutual Information Estimator
knnp Time Series Prediction using K-Nearest
Neighbors Algorithm (Parallel)
knnwtsim K Nearest Neighbor Forecasting with a Tailored
Similarity Metric
knobi Known-Biomass Production Model (KBPM)
knockoff The Knockoff Filter for Controlled Variable
Selection
knotR Knot Diagrams using Bezier Curves
kntnr R Client for 'kintone' API
koRpus Text Analysis with Emphasis on POS Tagging,
Readability, and Lexical Diversity
koRpus.lang.en Language Support for 'koRpus' Package: English
kofdata Get Data from the 'KOF Datenservice' API
kofnGA A Genetic Algorithm for Fixed-Size Subset
Selection
kohonen Supervised and Unsupervised Self-Organising
Maps
kokudosuuchi Utilities for 'Kokudo Suuchi'
kollaR Event Classification, Visualization and
Analysis of Eye Tracking Data
komaletter Simply Beautiful PDF Letters from Markdown
konfound Quantify the Robustness of Causal Inferences
kosel Variable Selection by Revisited Knockoffs
Procedures
kosis Korean Statistical Information Service (KOSIS)
kpcaIG Variables Interpretability with Kernel PCA
kpeaks Determination of K Using Peak Counts of
Features for Clustering
kpiwidget KPI Widgets for Quarto Dashboards with
Crosstalk
kriens Continuation Passing Style Development
krige Geospatial Kriging with Metropolis Sampling
kriging Ordinary Kriging
krippendorffsalpha Measuring Agreement Using Krippendorff's Alpha
Coefficient
krm Kernel Based Regression Models
kronos Microbiome Oriented Circadian Rhythm Analysis
Toolkit
kronxNBC Clock of Regimes Naive Bayes Classifier
(Student-t)
ks Kernel Smoothing
ksNN K* Nearest Neighbors Algorithm
kselection Selection of K in K-Means Clustering
ksformat 'SAS'-Style 'PROC FORMAT' for R
ksharp Cluster Sharpening
ksm Kernel Density Estimation for Random Symmetric
Positive Definite Matrices
ksrlive Identify Kinase Substrate Relationships Using
Dynamic Data
kssa Known Sub-Sequence Algorithm
kst Knowledge Space Theory
kstIO Knowledge Space Theory Input/Output
kstMatrix Basic Functions in Knowledge Space Theory Using
Matrix Representation
ktaucenters Robust Clustering Procedures
ktsolve Configurable Function for Solving Families of
Nonlinear Equations
ktweedie 'Tweedie' Compound Poisson Model in the
Reproducing Kernel Hilbert Space
kuenm2 Detailed Development of Ecological Niche Models
kuiper.2samp Two-Sample Kuiper Test
kutils Project Management Tools
kuzco Computer Vision with Large Language Models
kuzuR Interface to 'kuzu' Graph Database
kvh Read/Write Files in Key-Value-Hierarchy Format
kvkapiR Interface to the Dutch Chamber of Commerce
(KvK) API
kvr2 Calculate and Compare Multiple Definitions of
Coefficient of Determination
kyotil Utility Functions for Statistical Analysis
Report Generation and Monte Carlo Studies
kza Kolmogorov-Zurbenko Adaptive Filters
kzs Kolmogorov-Zurbenko Spatial Smoothing and
Applications
l0ara Sparse Generalized Linear Model with L0
Approximation for Feature Selection
l1kdeconv Deconvolution for LINCS L1000 Data
l1rotation Identify Loading Vectors under Sparsity in
Factor Models
l1spectral An L1-Version of the Spectral Clustering
l2boost Exploring Friedman's Boosting Algorithm for
Regularized Linear Regression
laGP Local Approximate Gaussian Process Regression
laOpenData Convenient Access to Los Angeles Open Data API
Endpoints
lab2clean Automation and Standardization of Cleaning
Clinical Laboratory Data
labNorm Normalize Laboratory Measurements by Age and
Sex
labdsv Ordination and Multivariate Analysis for
Ecology
label.switching Relabelling MCMC Outputs of Mixture Models
labelVector Label Attributes for Atomic Vectors
labeleR Automate the Production of Custom Labels,
Badges, Certificates, and Other Documents
labeling Axis Labeling
labelled Manipulating Labelled Data
labelmachine Make Labeling of R Data Sets Easy
labelr Label Data Frames, Variables, and Values
lablaster Laser Ablation Blast Through Endpoint Detection
labsimplex Simplex Optimization Algorithms for Laboratory
and Manufacturing Processes
labstatR Libreria Del Laboratorio Di Statistica Con R
labstats Data Sets for the Book "Experimental Design for
Laboratory Biologists"
lacm Latent Autoregressive Count Models
lacrmr Connect to the 'Less Annoying CRM' API
lactater Tools for Analyzing Lactate Thresholds
lacunarity Standard and Generalized Lacunarity for Binary
Time Series
lacunaritycovariance Gliding Box Lacunarity and Other Metrics for 2D
Random Closed Sets
lacunr Fast 3D Lacunarity for Voxel Data
ladder Get on to the Slides
laeken Estimation of Indicators on Social Exclusion
and Poverty
lagged Classes and Methods for Lagged Objects
lagsarlmtree Spatial Lag Model Trees
lakefetch Calculate Fetch and Wave Exposure for Lake
Sampling Points
lakemorpho Lake Morphometry Metrics
lakhesis Consensus Seriation for Binary Data
lamW Lambert-W Function
lambda.r Modeling Data with Functional Programming
lambdaTS Variational Seq2Seq Model with Lambda
Transformer for Time Series Analysis
lambdr Create a Runtime for Serving Containerised R
Functions on 'AWS Lambda'
laminr Client for 'LaminDB'
lamle Maximum Likelihood Estimation of Latent
Variable Models
lancor Statistical Inference via Lancaster Correlation
landest Landmark Estimation of Survival and Treatment
Effect
landform Topographic Position Index-Based Landform
Classification
landmaRk Time-to-Event Landmark Analysis using an Array
of Longitudinal and Survival Sub-Models
landmix Landmark Prediction for Mixture Data
landmulti Landmark Prediction with Multiple Short-Term
Events
landpred Landmark Prediction of a Survival Outcome
landsat Radiometric and Topographic Correction of
Satellite Imagery
landscapeR Categorical Landscape Simulation Facility
landscapemetrics Landscape Metrics for Categorical Map Patterns
landsepi Landscape Epidemiology and Evolution
lang Translates R Help Documentation using Large
Language Models
langevitour Langevin Tour
languageR Data Sets and Functions with Analyzing
Linguistic Data: A Practical Introduction to
Statistics
languagelayeR Access the 'languagelayer' API
languageserver Language Server Protocol
languageserversetup Automated Setup and Auto Run for R Language
Server
lans2r Work with Look at NanoSIMS Data in R
lapop Processing, Visualizing, and Labeling Americas
Barometer Data
lares Lean Analytics and Robust Exploration Sidekick
lareshiny Lares 'shiny' Modules
lars Least Angle Regression, Lasso and Forward
Stagewise
lassopv Nonparametric P-Value Estimation for Predictors
in Lasso
latbias Calculate the Latitudinal Bias Index
latcontrol Evaluation of the Role of Control Variables in
Structural Equation Models
latdiag Draws Diagrams Useful for Checking Latent
Scales
latenetwork Inference on LATEs under Network Interference
of Unknown Form
latent2likert Converting Latent Variables into Likert Scale
Responses
latentFactoR Data Simulation Based on Latent Factors
latentcor Fast Computation of Latent Correlations for
Mixed Data
latentnet Latent Position and Cluster Models for
Statistical Networks
later Utilities for Scheduling Functions to Execute
Later with Event Loops
latex2exp Use LaTeX Expressions in Plots
latexSymb R Functions for Readable LaTeX Mathematical
Expressions
latexdiffr Diff TeX, 'rmarkdown' or 'quarto' Files Using
the 'latexdiff' Utility
latexpdf Convert Tables to PDF or PNG
latrend A Framework for Clustering Longitudinal Data
latte Interface to 'LattE' and '4ti2'
latticeDensity Density Estimation and Nonparametric Regression
on Irregular Regions
latticeExtra Extra Graphical Utilities Based on Lattice
lava Latent Variable Models
lavaSearch2 Tools for Model Specification in the Latent
Variable Framework
lavaan Latent Variable Analysis
lavaan.mi Fit Structural Equation Models to Multiply
Imputed Data
lavaan.printer Helper Functions for Printing 'lavaan' Outputs
lavaan.shiny Latent Variable Analysis with Shiny
lavaanExtra Convenience Functions for Package 'lavaan'
lavaanPlot Path Diagrams for 'Lavaan' Models via
'DiagrammeR'
lavaangui Graphical User Interface with Integrated
'Diagrammer' for 'Lavaan'
lavacreg Latent Variable Count Regression Models
lavinteract Post-Estimation Utilities for 'lavaan' Fitted
Models
lawstat Tools for Biostatistics, Public Policy, and Law
lax Loglikelihood Adjustment for Extreme Value
Models
lay Simple but Efficient Rowwise Jobs
layer Tilt your Maps and Turn Them into 'ggplot'
Plots
lazyData A LazyData Facility
lazyeval Lazy (Non-Standard) Evaluation
lazysf Delayed Read for 'GDAL' Vector Data Sources
lazysql Lazy SQL Programming
lazytrade Learn Computer and Data Science using
Algorithmic Trading
lba Latent Budget Analysis for Compositional Data
lbaModel The Linear Ballistic Accumulation Model
lbfgs Limited-memory BFGS Optimization
lbfgsb3c Limited Memory BFGS Minimizer with Bounds on
Parameters with optim() 'C' Interface
lbm Log Binomial Regression Model in Exact Method
lboxcox Implementation of Logistic Box-Cox Regression
lbreg Log-Binomial Regression with Constrained
Optimization
lcars LCARS Aesthetic for Shiny
lcc Advanced Analysis of Longitudinal Data Using
the Concordance Correlation Coefficient
lcda Latent Class Discriminant Analysis
lchemix A Bayesian Multi-Dimensional Couple-Based
Latent Risk Model
lcmm Extended Mixed Models Using Latent Classes and
Latent Processes
lconnect Simple Tools to Compute Landscape Connectivity
Metrics
lcopula Liouville Copulas
lcpm Ordinal Outcomes: Generalized Linear Models
with the Log Link
lcra Bayesian Joint Latent Class and Regression
Models
lcsm Univariate and Bivariate Latent Change Score
Modelling
lcyanalysis Stock Data Analysis Functions
lda Collapsed Gibbs Sampling Methods for Topic
Models
ldaPrototype Prototype of Multiple Latent Dirichlet
Allocation Runs
ldamatch Selection of Statistically Similar Research
Groups
ldbod Local Density-Based Outlier Detection
ldbounds Lan-DeMets Method for Group Sequential
Boundaries
lddmm Longitudinal Drift-Diffusion Mixed Models
(LDDMM)
ldhmm Hidden Markov Model for Financial Time-Series
Based on Lambda Distribution
ldmppr Estimate and Simulate from Location Dependent
Marked Point Processes
ldsep Linkage Disequilibrium Shrinkage Estimation for
Polyploids
ldt Automated Uncertainty Analysis
leadeR Profiling Leaders at a Distance
leaderCluster Leader Clustering Algorithm
leaf Learning Equations for Automated Function
Discovery
leafSTAR Silhouette to Area Ratio of Tilted Surfaces
leafdown Provides Drill Down Functionality for 'leaflet'
Choropleths
leafem 'leaflet' Extensions for 'mapview'
leafgl High-Performance 'WebGl' Rendering for Package
'leaflet'
leaflegend Add Custom Legends to 'leaflet' Maps
leaflet Create Interactive Web Maps with the JavaScript
'Leaflet' Library
leaflet.extras Extra Functionality for 'leaflet' Package
leaflet.extras2 Extra Functionality for 'leaflet' Package
leaflet.minicharts Mini Charts for Interactive Maps
leaflet.providers Leaflet Providers
leafpm Leaflet Map Plugin for Drawing and Editing
leafpop Include Tables, Images and Graphs in Leaflet
Pop-Ups
leafsync Small Multiples for Leaflet Web Maps
leaftime 'Leaflet-timeline' Plugin for Leaflet
leafwax Bayesian Inversion of Leaf Wax Hydrogen
Isotopes to Precipitation
leakr Data Leakage Detection Tools for Machine
Learning
leakyIV Leaky Instrumental Variables
leapgp Localized Ensemble of Approximate Gaussian
Processes
leapp Latent Effect Adjustment After Primary
Projection
leaps Regression Subset Selection
learnPopGen Population Genetic Simulations & Numerical
Analysis
learner Latent Space-Based Transfer Learning
learningr Data and Functions to Accompany the Book
"Learning R"
learningtower OECD PISA Datasets from 2000-2022 in an
Easy-to-Use Format
learnr Interactive Tutorials for R
learnrbook Datasets and Code Examples from P. J. Aphalo's
"Learn R" Book
leastcostpath Modelling Pathways and Movement Potential
Within a Landscape
ledger Utilities for Importing Data from Plain Text
Accounting Files
leem Laboratory of Teaching to Statistics and
Mathematics
lefko3 Historical and Ahistorical Population
Projection Matrix Analysis
lefser R implementation of the LEfSE method for
microbiome biomarker discovery
legendry Extended Legends and Axes for 'ggplot2'
legion Forecasting Using Multivariate Models
legislatoR Interface to the Comparative Legislators
Database
legocolors Official Lego Color Palettes
lehdr Grab Longitudinal Employer-Household Dynamics
(LEHD) Flat Files
lehuynh Le-Huynh Truc-Ly's R Code and Templates
leiden R Implementation of Leiden Clustering Algorithm
leidenAlg Implements the Leiden Algorithm via an R
Interface
leidenbase R and C/C++ Wrappers to Run the Leiden
find_partition() Function
leiv Bivariate Linear Errors-In-Variables Estimation
lemna Lemna Ecotox Effect Model
lemon Freshing Up your 'ggplot2' Plots
lenght Allow Misspellings of Length Function
lenses Elegant Data Manipulation with Lenses
leontief Input-Output Analysis
lepidochroma Colour Palettes Inspired by Butterflies
leprechaun Create Simple 'Shiny' Applications as Packages
leptokurticMixture Implements Parsimonious Finite Mixtures of
Multivariate Elliptical Leptokurtic-Normals
lero.lero Generate 'Lero Lero' Quotes
less Learning with Subset Stacking
lessR Less Code with More Comprehensive Results
lessSEM Non-Smooth Regularization for Structural
Equation Models
lest Vectorised Nested if-else Statements Similar to
CASE WHEN in 'SQL'
lestat A Package for Learning Statistics
letsHerp An Interface to the Reptile Database
letsR Data Handling and Analysis in Macroecology
letsRept An Interface to the Reptile Database
lettervalue Computing Letter Values
leunbachR Leunbach Test Equating
levitate Fuzzy String Comparison
lexRankr Extractive Summarization of Text with the
LexRank Algorithm
lexicon Lexicons for Text Analysis
lexiconPT Lexicons for Portuguese Text Analysis
lfa Logistic Factor Analysis for Categorical Data
lfactors Factors with Levels
lfc Log Fold Change Distribution Tools for Working
with Ratios of Counts
lfda Local Fisher Discriminant Analysis
lfe Linear Group Fixed Effects
lfebd3 Generation and Analysis of 3-Level and 5-Level
Factorial Block Designs
lfl Linguistic Fuzzy Logic
lfmm Latent Factor Mixed Models
lfproQC Quality Control for Label-Free Proteomics
Expression Data
lfstat Calculation of Low Flow Statistics for Daily
Stream Flow Data
lg Locally Gaussian Distributions: Estimation and
Methods
lgarch Simulation and Estimation of Log-GARCH Models
lgcp Log-Gaussian Cox Process
lglasso Longitudinal Graphical Lasso
lgr A Fully Featured Logging Framework
lgrExtra Extra Appenders for 'lgr'
lgrdata Example Datasets for a Learning Guide to R
lgspline Lagrangian Multiplier Smoothing Splines for
Smooth Function Estimation
lgtdl A Set of Methods for Longitudinal Data Objects
lhmixr Fit Sex-Specific Life History Models with
Missing Classifications
lhs Latin Hypercube Samples
libbib Various Utilities for Library
Science/Assessment and Cataloging
libcoin Linear Test Statistics for Permutation
Inference
libdeflate DEFLATE Compression and Static Library
libgeos Open Source Geometry Engine ('GEOS') C API
libimath 'Imath' Computer Graphics Linear Algebra Static
Library
libipldr R Bindings to the 'Rust' 'IPLD' Library
libopenexr Static Library and Headers for 'OpenEXR' Image
I/O
libr Libraries, Data Dictionaries, and a Data Step
for R
librarian Install, Update, Load Packages from CRAN,
'GitHub', and 'Bioconductor' in One Step
librarysnapshot Library Snapshot for Packages and Dependencies
in Use by Current Session
libstable4u Stable Distribution Functions...For You
licoread Reads Raw Files from Li-COR Gas Analyzers
lievens Real-Time PCR Data Sets by Lievens et al.
(2012)
lifeR Identify Sites for Your Bird List
lifecontingencies Financial and Actuarial Mathematics for Life
Contingencies
lifecourse Quantification of Lifecourse Fluidity
lifecycle Manage the Life Cycle of your Package Functions
lifepack Insurance Reserve Calculations
liftLRD Wavelet Lifting Estimators of the Hurst
Exponent for Regularly and Irregularly Sampled
Time Series
liftr Containerize R Markdown Documents for
Continuous Reproducibility
lifx Control 'LIFX' Smart Light Bulbs
lightAUC Fast AUC Computation
lightgbm Light Gradient Boosting Machine
lightparser From 'Rmarkdown' and 'Quarto' Files to Tibble
and Back
lightr Read Spectrometric Data and Metadata
lightsf A Curated Collection of Georeferenced and
Spatial Datasets
lightsout Implementation of the 'Lights Out' Puzzle Game
likelihood Methods for Maximum Likelihood Estimation
likelihood.contr Likelihood Contribution Models for
Heterogeneous Observation Types
likelihood.model Likelihood-Based Statistical Inference in the
Fisherian Tradition
likelihoodAsy Functions for Likelihood Asymptotics
likelihoodExplore Likelihood Exploration
likelihoodR Likelihood Analyses for Common Statistical
Tests
likelihoodTools Managing Results from Maximum Likelihood
Estimation
likert Analysis and Visualization Likert Items
lilikoi Metabolomics Personalized Pathway Analysis Tool
lillies Estimation of Life Years Lost
limSolve Solving Linear Inverse Models
lime Local Interpretable Model-Agnostic Explanations
limexhub Quantitative Trade Signals
limma Linear Models for Microarray and Omics Data
limonaid Working with 'LimeSurvey' Surveys and Responses
limorhyde Differential Analysis of Rhythmic Transcriptome
Data
limorhyde2 Quantify Rhythmicity and Differential
Rhythmicity in Genomic Data
lin.eval Perform Polynomial Evaluation of Linearity
linERR Linear Excess Relative Risk Model
linbin Binning and Plotting of Linearly Referenced
Data
lincom Linear Biomarker Combination: Empirical
Performance Optimization
lindia Automated Linear Regression Diagnostic
lineagefreq Lineage Frequency Dynamics from Genomic
Surveillance Counts
linearModel Linear Model Functions
lineartestr Linear Specification Testing
linelist Tagging and Validating Epidemiological Data
linelistBayes Bayesian Analysis of Epidemic Data Using Line
List and Case Count Approaches
linemap Line Maps
lineup Lining Up Two Sets of Measurements
lineup2 Lining Up Two Sets of Measurements
lineupjs 'HTMLWidget' Wrapper of 'LineUp' for Visual
Analysis of Multi-Attribute Rankings
linevis Interactive Time Series Visualizations
lingdist Fast Linguistic Distance and Alignment
Computation
lingglosses Interlinear Glossed Linguistic Examples and
Abbreviation Lists Generation
lingmatch Linguistic Matching and Accommodation
lingtypology Linguistic Typology and Mapping
linguisticsdown Easy Linguistics Document Writing with R
Markdown
link Hyperlink Automatic Detection
link2GI Linking Geographic Information Systems, Remote
Sensing and Other Command Line Tools
linkeR Link Interactive Plots and Tables in 'shiny'
Applications
linkedInadsR Access to 'LinkedIn' Ads via the 'Windsor.ai'
API
linkprediction Link Prediction Methods
linkspotter Bivariate Correlations Calculation and
Visualization
linktree Estimate Transmission Assortativity
Coefficients
linl 'linl' is not 'Letter'
linne Convenient 'CSS'
linpk Generate Concentration-Time Profiles from
Linear PK Systems
linprog Linear Programming / Optimization
linreg Linear Regression and Model Selection Framework
lintools Manipulation of Linear Systems of
(in)Equalities
lintr A 'Linter' for R Code
lionfish Interactive 'tourr' Using 'python'
lipidmapsR Lipid Maps Rest Service
lipidomeR Integrative Visualizations of the Lipidome
liqueueR Implements Queue, PriorityQueue and Stack
Classes
lisa Color Palettes from Color Lisa
lisat Longitudinal Integration Site Analysis Toolkit
lisp List-Processing à La 'SRFI-1'
lisrelToR Import Output from LISREL into R
list Statistical Methods for the Item Count
Technique and List Experiment
listArray Incomplete Array with Arbitrary R Objects as
Indices
listWithDefaults List with Defaults
listarrays A Toolbox for Working with R Arrays in a
Functional Programming Style
listcomp List Comprehensions
listcompr List Comprehension for R
listenv Environments Behaving (Almost) as Lists
listr Tools for Lists
listviewer 'htmlwidget' for Interactive Views of R Lists
lit Latent Interaction Testing for Genome-Wide
Studies
litRiddle Dataset and Tools to Research the Riddle of
Literary Quality
lite Likelihood-Based Inference for Time Series
Extremes
litedown A Lightweight Version of R Markdown
liteq Lightweight Portable Message Queue Using
'SQLite'
literanger Fast Serializable Random Forests Based on
'ranger'
litteR Litter Analysis
litterfitter Fits a Collection of Curves to Single-Cohort
Decomposition Data
liureg Liu Regression with Liu Biasing Parameters and
Statistics
live Local Interpretable (Model-Agnostic) Visual
Explanations
liver Toolkit and Datasets for Data Science
ljr Logistic Joinpoint Regression
llama Leveraging Learning to Automatically Manage
Algorithms
llamaR Interface for Large Language Models via
'llama.cpp'
llm.api Minimal LLM Chat Interface
llmclean LLM-Assisted Data Cleaning with Multi-Provider
Support
llmcoder LLM-Powered Code Generation, Error Fixing, and
Chat for 'RStudio'
llmflow Reasoning and Acting Workflow for Automated
Data Analysis
llmhelper Unified Interface for Large Language Model
Interactions
llmjoin LLM-Powered Fuzzy Join
llmjson Repair Malformed JSON Strings
llmshieldr Safety Guardrails for Large Language Model
Workflows
llogistic The L-Logistic Distribution
llrem LLM Relational Event Models
lm.beta Add Standardized Regression Coefficients to
Linear-Model-Objects
lm.br Linear Model with Breakpoint
lmDiallel Linear Fixed/Mixed Effects Models for Diallel
Crosses
lmForc Linear Model Forecasting
lmPerm Permutation Tests for Linear Models
lmQCM An Algorithm for Gene Co-Expression Analysis
lmSubsets Exact Variable-Subset Selection in Linear
Regression
lmap Logistic Mapping
lmboot Bootstrap in Linear Models
lmds Landmark Multi-Dimensional Scaling
lme4 Linear Mixed-Effects Models using 'Eigen' and
S4
lme4GS 'lme4' for Genomic Selection
lme4breeding Breeding-Related Mixed-Effects Models
lmeInfo Information Matrices for 'lmeStruct' and
'glsStruct' Objects
lmeSplines Add Smoothing Spline Modelling Capability to
`nlme`
lmerPerm Perform Permutation Test on General Linear and
Mixed Linear Regression
lmerTest Tests in Linear Mixed Effects Models
lmeresampler Bootstrap Methods for Nested Linear
Mixed-Effects Models
lmf Functions for Estimation and Inference of
Selection in Age-Structured Populations
lmfor Functions for Forest Biometrics
lmhelprs Helper Functions for Linear Model Analysis
lmls Gaussian Location-Scale Regression
lmm Linear Mixed Models
lmmot Multiple Ordinal Tobit (MOT) Model
lmmpar Parallel Linear Mixed Model
lmmprobe Sparse High-Dimensional Linear Mixed Modeling
with a Partitioned Empirical Bayes ECM
Algorithm
lmodel2 Model II Regression
lmom L-Moments
lmomPi (Precipitation) Frequency Analysis and
Variability with L-Moments from 'lmom'
lmomRFA Regional Frequency Analysis using L-Moments
lmomco L-Moments, Censored L-Moments, Trimmed
L-Moments, L-Comoments, and Many Distributions
lmreg Data and Functions Used in Linear Models and
Regression with R: An Integrated Approach
lmridge Linear Ridge Regression with Ridge Penalty and
Ridge Statistics
lmtest Testing Linear Regression Models
lmtestrob Outlier Robust Specification Testing
lmtp Non-Parametric Causal Effects of Feasible
Interventions Based on Modified Treatment
Policies
lmviz A Package to Visualize Linear Models Features
and Play with Them
lmw Linear Model Weights
lncDIFF Long Non-Coding RNA Differential Expression
Analysis
lnmCluster Perform Logistic Normal Multinomial Clustering
for Microbiome Compositional Data
lnmixsurv Bayesian Mixture Log-Normal Survival Model
loa Lattice Options and Add-Ins
loadeR Load Data for Analysis System
loadings Loadings for Principal Component Analysis and
Partial Least Squares
lobby Interact with the 'US Senate Lobbying
Disclosure API'
lobbyR Get Federal Lobbying Disclosures
lobsteR Access and Process 'LOBSTER' High-Frequency
Data
lobstr Visualize R Data Structures with Trees
locStra Fast Implementation of (Local) Population
Stratification Methods
locaR A Set of Tools for Sound Localization
localFDA Localization Processes for Functional Data
Analysis
localICE Local Individual Conditional Expectation
localIV Estimation of Marginal Treatment Effects using
Local Instrumental Variables
localLLM Running Local LLMs with 'llama.cpp' Backend
localModel LIME-Based Explanations with Interpretable
Inputs Based on Ceteris Paribus Profiles
localScore Package for Sequence Analysis by Local Score
localboot Local Bootstrap Methods for Various Networks
localgauss Estimating Local Gaussian Parameters
localsp Local Indicator of Stratified Power
locateip Locate IP Addresses with 'ip-api'
locatexec Detection and Localization of Executable Files
locationgamer Identification of Location Game Equilibria in
Networks
locfdr Computes Local False Discovery Rates
locfit Local Regression, Likelihood and Density
Estimation
locits Test of Stationarity and Localized
Autocovariance
locpol Kernel Local Polynomial Regression
locuszoomr Gene Locus Plot with Gene Annotations
lodGWAS Genome-Wide Association Analysis of a Biomarker
Accounting for Limit of Detection
loder Dependency-Free Access to PNG Image Files
loedata Data Sets from "Lectures on Econometrics" by
Chirok Han
loewesadditivity Loewe's Additivity
lofifonts Text Rendering with Bitmap and Vector Fonts
log Record Events and Issues
log4r A Fast and Lightweight Logging System for R,
Based on 'log4j'
logKDE Computing Log-Transformed Kernel Density
Estimates for Positive Data
logNormReg log Normal Linear Regression
logOfGamma Natural Logarithms of the Gamma Function for
Large Values
logStirling2 Fast Stirling Numbers of the Second Kind
logbin Relative Risk Regression Using the Log-Binomial
Model
logconcens Maximum Likelihood Estimation of a Log-Concave
Density Based on Censored Data
logcondens Estimate a Log-Concave Probability Density from
Iid Observations
logcondiscr Estimate a Log-Concave Probability Mass
Function from Discrete I.i.d. Observations
logcumulant Goodness-of-Fit Tests and Diagrams Based on
Mellin Log-Cumulants
logger A Lightweight, Modern and Flexible Logging
Utility
logging R Logging Package
loggit2 Easy-to-Use, Dependencyless Logger
logiBin Binning Variables to Use in Logistic Regression
logib Salary Analysis by the Swiss Federal Office for
Gender Equality
logicDT Identifying Interactions Between Binary
Predictors
logihist Combined Graphs for Logistic Regression
login 'shiny' Login Module
logistf Firth's Bias-Reduced Logistic Regression
logistic4p Logistic Regression with Misclassification in
Dependent Variables
logisticPCA Binary Dimensionality Reduction
logitFD Functional Principal Components Logistic
Regression
logitnorm Functions for the Logitnormal Distribution
logitr Logit Models w/Preference & WTP Space Utility
Parameterizations
loglognorm Double Log Normal Distribution Functions
logmult Log-Multiplicative Models, Including
Association Models
lognGPD Estimation of a Lognormal - Generalized Pareto
Mixture
lognorm Functions for the Lognormal Distribution
logolink An Interface for Running 'NetLogo' Simulations
logos Access to the Hebrew, Greek, and English
Version of the Bible
logr Creates Log Files
logrx A Logging Utility Focus on Clinical Trial
Programming Workflows
logrxaddin Addin for the 'logrx' Package
logspline Routines for Logspline Density Estimation
lokern Kernel Regression Smoothing with Local or
Global Plug-in Bandwidth
lolR Linear Optimal Low-Rank Projection
lolog Latent Order Logistic Graph Models
lomb Lomb-Scargle Periodogram
long2lstmarray Longitudinal Dataframes into Arrays for Machine
Learning Training
longROC Time-Dependent Prognostic Accuracy with
Multiply Evaluated Bio Markers or Scores
longRPart2 Recursive Partitioning of Longitudinal Data
longclust Model-Based Clustering and Classification for
Longitudinal Data
longevity Statistical Methods for the Analysis of Excess
Lifetimes
longit High Dimensional Longitudinal Data Analysis
Using MCMC
longitree Decision Tree Analysis for Longitudinal
Measurement Data
longitudinal Analysis of Multiple Time Course Data
longitudinalANAL Longitudinal Data Analysis
longitudinalcascade Longitudinal Cascade
longke Nonparametric Predictive Model for Sparse and
Irregular Longitudinal Data
longmemo Statistics for Long-Memory Processes (Book Jan
Beran), and Related Functionality
longmixr Longitudinal Consensus Clustering with
'flexmix'
longpower Sample Size Calculations for Longitudinal Data
longreadvqs Viral Quasispecies Comparison from Long-Read
Sequencing Data
longsurr Longitudinal Surrogate Marker Analysis
longurl Expand Short 'URLs'
loo Efficient Leave-One-Out Cross-Validation and
WAIC for Bayesian Models
lookout Leave One Out Kernel Density Estimates for
Outlier Detection
lookup Functions Similar to VLOOKUP in Excel
loon Interactive Statistical Data Visualization
loon.data Data Used to Illustrate 'Loon' Functionality
loon.ggplot A Grammar of Interactive Graphics
loon.shiny Automatically Create a 'Shiny' App Based on
Interactive 'Loon' Widgets
loon.tourr Tour in 'Loon'
loopevd Loop Functions for Extreme Value Distributions
lorad Lowest Radial Distance Method of Marginal
Likelihood Estimation
lorbridge Bridging Log-Odds Ratios and Correspondence
Analysis via Closeness-of-Concordance Measures
lordif Logistic Ordinal Regression Differential Item
Functioning using IRT
lorec LOw Rand and sparsE Covariance matrix
estimation
lorem Generate Lorem Ipsum Text
lorentz The Lorentz Transform in Relativistic Physics
lori Imputation of High-Dimensional Count Data using
Side Information
lotri A Simple Way to Specify Symmetric, Block
Diagonal Matrices
lovecraftr A Collection of Lovecraftian Tales and Texts
lowmemtkmeans Low Memory Use Trimmed K-Means
lowpassFilter Lowpass Filtering
lpSolve Interface to 'Lp_solve' v. 5.5 to Solve
Linear/Integer Programs
lpSolveAPI R Interface to 'lp_solve' Version 5.5.2.0
lpacf Local Partial Autocorrelation Function
Estimation for Locally Stationary Wavelet
Processes
lpanda Local Political Actor Network Diachronic
Analysis Tools
lpc Lassoed Principal Components for Testing
Significance of Features
lpcde Boundary Adaptive Local Polynomial Conditional
Density Estimator
lpda Linear Programming Discriminant Analysis
lpdensity Local Polynomial Density Estimation and
Inference
lphom Ecological Inference by Linear Programming
under Homogeneity
lpint Local Polynomial Estimators of the Intensity
Function and Its Derivatives
lpirfs Local Projections Impulse Response Functions
lpl Local Partial Likelihood Estimation and
Simultaneous Confidence Band
lpmec Measurement Error Analysis and Correction Under
Identification Restrictions
lpridge Local Polynomial (Ridge) Regression
lpsymphony Symphony integer linear programming solver in R
lqmix Linear Quantile Mixture Models
lqmm Linear Quantile Mixed Models
lqr Robust Linear Quantile Regression
lrd A Package for Processing Lexical Response Data
lrequire Sources an R "Module" with Caching &
Encapsulation, Returning Exported Vars
lrgs Linear Regression by Gibbs Sampling
lrstat Power and Sample Size Calculation for
Non-Proportional Hazards and Beyond
lsReg Performs Large Scale Regressions
lsa Latent Semantic Analysis
lsasim Functions to Facilitate the Simulation of Large
Scale Assessment Data
lsei Solving Least Squares or Quadratic Programming
Problems under Equality/Inequality Constraints
lsirm12pl Latent Space Item Response Model
lsl Latent Structure Learning
lslx Semi-Confirmatory Structural Equation Modeling
via Penalized Likelihood or Least Squares
lsm Estimation of the log Likelihood of the
Saturated Model
lsmeans Least-Squares Means
lsoda 'C++' Header Library for Ordinary Differential
Equations
lspartition Nonparametric Estimation and Inference
Procedures using Partitioning-Based Least
Squares Regression
lspline Linear Splines with Convenient Parametrisations
lspls LS-PLS Models
lsr Companion to "Learning Statistics with R"
lss2 The Accelerated Failure Time Model to Right
Censored Data Based on Least-Squares Principle
lssdoc Render Multilingual Questionnaires from
'LimeSurvey' '.lss' Files
ltable Easy to Make (Lazy) Tables
ltc Collection of Artistic and Nature-Inspired
Color Palettes
lterdatasampler Educational Dataset Examples from the Long Term
Ecological Research Program
lterpalettefinder Extract Color Palettes from Photos and Pick
Official LTER Palettes
ltertools Tools Developed by the Long Term Ecological
Research Community
ltm Latent Trait Models under IRT
ltmix Left-Truncated Mixtures of Gamma, Weibull, and
Lognormal Distributions
ltmle Longitudinal Targeted Maximum Likelihood
Estimation
ltsa Linear Time Series Analysis
ltsk Local Time Space Kriging
ltxsparklines Lightweight Sparklines for a LaTeX Document
luajr 'LuaJIT' Scripting
lubridate Make Dealing with Dates a Little Easier
lubrilog Get Insights on 'lubridate' Operations
lucas Package to Download and Create the DB of LUCAS
Data Harmonized
lucid Printing Floating Point Numbers in a
Human-Friendly Format
lucidr 'Lucide' Icons for 'R'
luckieR Calculations of Luck in Structured Population
Models
ludic Linkage Using Diagnosis Codes
lue Light Use Efficiency Model to Estimate Biomass
and YIELD with and Without Vapour Pressure
Deficit
lulab.utils Supporting Functions Maintained by Zhen Lu
lulcc Land Use Change Modelling in R
lumberjack Track Changes in Data
lumbermark Resistant Clustering via Chopping Up Mutual
Reachability Minimum Spanning Trees
lumi BeadArray Specific Methods for Illumina
Methylation and Expression Microarrays
lunar Calculate Lunar Phase & Distance, Seasons and
Related Environmental Factors
lutz Look Up Time Zones of Point Coordinates
luz Higher Level 'API' for 'torch'
luzlogr Lightweight Logging for R Scripts
lvimp Perform Inference on Summaries of Longitudinal
Algorithm-Agnostic Variable Importance
lvmisc Veras Miscellaneous
lvnet Latent Variable Network Modeling
lvplot Letter Value 'Boxplots'
lwc2022 Langa-Weir Classification of Cognitive Function
for 2022 HRS Data
lwgeom Bindings to Selected 'liblwgeom' Functions for
Simple Features
lzstring Wrapper for 'lz-string' 'C++' Library
m2b Movement to Behaviour Inference using Random
Forest
m2r Interface to 'Macaulay2'
m61r Package About Data Manipulation in Pure Base R
mAr Multivariate AutoRegressive Analysis
mBvs Bayesian Variable Selection Methods for
Multivariate Data
mDAG Inferring Causal Network from Mixed
Observational Data Using a Directed Acyclic
Graph
mExplorer Identifying Master Gene Regulators from Gene
Expression and DNA-Binding Data
mFD Compute and Illustrate the Multiple Facets of
Functional Diversity
mFDP Control of the Median of the FDP
mFLICA Leadership-Inference Framework for Multivariate
Time Series
mFilter Miscellaneous Time Series Filters
mGSFPCA Estimate Functional Principal Components from
Sparse Data
mHG Minimum-Hypergeometric Test
mHMMbayes Multilevel Hidden Markov Models Using Bayesian
Estimation
mKBO Multi-Group Kitagawa-Blinder-Oaxaca
Decomposition
mLLMCelltype Cell Type Annotation Using Large Language
Models
mMPA Implementation of Marker-Assisted Mini-Pooling
with Algorithm
mRMRe Parallelized Minimum Redundancy, Maximum
Relevance (mRMR)
mRc Multi-Visit Closed Population Mark-Recapture
Estimates
mRpostman An IMAP Client for R
mSTEM Multiple Testing of Local Extrema for Detection
of Change Points
mSigPlot Plotting Mutational Signatures and Mutational
Spectra
mSigTools Mutational Signature Analysis Tools
mSimCC Micro Simulation Model for Cervical Cancer
Prevention
mStats Epidemiological Data Analysis
maGUI A Graphical User Interface for Microarray Data
Analysis and Annotation
maSAE Mandallaz' Model-Assisted Small Area Estimators
maat Multiple Administrations Adaptive Testing
mabacR Assisting Decision Makers
mable Maximum Approximate Bernstein/Beta Likelihood
Estimation
macleish Retrieve Data from MacLeish Field Station
maclogp Measures of Uncertainty for Model Selection
macro A Macro Language for 'R' Programs
macroBiome A Tool for Mapping the Distribution of the
Biomes and Bioclimate
macrocol Colombian Macro-Financial Time Series Generator
macrosyntR Draw Ordered Oxford Grids and Chord Diagrams
mactivate Multiplicative Activation
maczic Mediation Analysis for Count and Zero-Inflated
Count Data
mada Meta-Analysis of Diagnostic Accuracy
maddison The Maddison Project Database
madgrad 'MADGRAD' Method for Stochastic Optimization
maditr Fast Data Aggregation, Modification, and
Filtering with Pipes and 'data.table'
madness Automatic Differentiation of Multivariate
Operations
madrat May All Data be Reproducible and Transparent
(MADRaT) *
madshapR Functions to Support Data Management and
Processing Using the Maelstrom Research
Approach
madsim A Flexible Microarray Data Simulation Model
maestro Orchestration of Data Pipelines
mafR Interface for Masked Autoregressive Flows
maftools Summarize, Analyze and Visualize MAF Files
magclass Data Class and Tools for Handling
Spatial-Temporal Data
magentabook HM Treasury Magenta Book Policy Evaluation
Primitives
magi MAnifold-Constrained Gaussian Process Inference
magic Create and Investigate Magic Squares
magicLamp 'WeMo Switch' Smart Plug Utilities
magicaxis Pretty Scientific Plotting with Minor-Tick and
Log Minor-Tick Support
magicfor Magic Functions to Obtain Results from for
Loops
magick Advanced Graphics and Image-Processing in R
magickGUI GUI Tools for Interactive Image Processing with
'magick'
magmaR R-Client for Interacting with the 'UCSF Data
Library'
magree Implements the O'Connell-Dobson-Schouten
Estimators of Agreement for Multiple Observers
magrittr A Forward-Pipe Operator for R
maicChecks Exact Matching and Matching-Adjusted Indirect
Comparison (MAIC)
maicplus Matching Adjusted Indirect Comparison
maidr Multimodal Access and Interactive Data
Representation
mailR A Utility to Send Emails from R
mailchimpR Get Mailchimp Data via the 'Windsor.ai' API
mailmerge Mail Merge Using R Markdown Documents and
'gmailr'
mailtoR Creates a Friendly User Interface for Emails
Sending in 'shiny'
makeFlow Visualizing Sequential Classifications
makePalette Make Palette
makedummies Create Dummy Variables from Categorical Data
makeit Run R Scripts if Needed
makemyprior Intuitive Construction of Joint Priors for
Variance Parameters
makepipe Pipeline Tools Inspired by 'GNU Make'
maketools Exploring and Testing the Toolchain and System
Libraries
makeunique Make Character Strings Unique
makicoint Maki Cointegration Test with Structural Breaks
malan MAle Lineage ANalysis
malani Machine Learning Assisted Network Inference
malariaAtlas An R Interface to Open-Access Malaria Data,
Hosted by the 'Malaria Atlas Project'
malaytextr Text Mining for Bahasa Malaysia
maldipickr Dereplicate and Cherry-Pick Mass Spectrometry
Spectra
mall Run Multiple Large Language Model Predictions
Against a Table, or Vectors
mallet An R Wrapper for the Java Mallet Topic Modeling
Toolkit
malvinas Islas Malvinas, Georgias Del Sur y Sándwich Del
Sur
mammalcol Access to the List of Mammal Species of
Colombia
managelocalrepo Manage a CRAN-Style Local Repository
mand Multivariate Analysis for Neuroimaging Data
mandelbrot Generates Views on the Mandelbrot Set
manhplot The Manhattan++ Plot
manifesto Create Project Manifest Files
manifestoR Access and Process Data and Documents of the
Manifesto Project
manifold Operations for Riemannian Manifolds
manipulate Interactive Plots for RStudio
manipulateWidget Add Even More Interactivity to Interactive
Charts
manta Multivariate Asymptotic Non-Parametric Test of
Association
mantar Missingness Alleviation for Network Analysis
mantis Multiple Time Series Scanner
manureshed Spatiotemporal Nutrient Balance Analysis Across
Agricultural and Municipal Systems
manydata Many Global Governance Datacubes
manydist Distance-Based Learning for Mixed-Type Data
manymodelr Build and Tune Several Models
manymome Mediation, Moderation and Moderated-Mediation
After Model Fitting
manymome.table Publication-Ready Tables for 'manymome' Results
manynet Many Ways to Make, Modify, Mark, and Measure
Myriad Networks
manystates Many Data on State and State-Like Actors in the
International System
maotai Tools for Matrix Algebra, Optimization and
Inference
mapSenegal Administrative Boundaries of Senegal
mapSpain Administrative Boundaries and Static Map Tiles
for Spain
mapStats Geographic Display of Survey Data Statistics
mapaccuracy Unbiased Thematic Map Accuracy and Area
mapbayr MAP-Bayesian Estimation of PK Parameters
mapboxapi R Interface to 'Mapbox' Web Services
mapcan Tools for Plotting Canadian Choropleth Maps and
Choropleth Alternatives
mapchina China Administrative Divisions Geospatial
Shapefile Data
mapdata Extra Map Databases
mapdeck Interactive Maps Using 'Mapbox GL JS' and
'Deck.gl'
mapedit Interactive Editing of Spatial Data in R
mapgl Interactive Maps with 'Mapbox GL JS' and
'MapLibre GL JS'
mapi Mapping Averaged Pairwise Information
mapindia Plot Map of the Indian Subcontinent
mapindiatools Mapping Data for 'mapindia' Package
mapiso Create Contour Polygons from Regular Grids
maplamina High-Performance 'WebGL' Mapping Widgets for R
maplegend Legends for Maps
mapme.biodiversity Efficient Monitoring of Global Biodiversity
Portfolios
mapmisc Utilities for Producing Maps
mapmixture Spatial Visualisation of Admixture on a
Projected Map
mapnhanespa Map Quantiles for Physical Activity from
'NHANES'
mappeR Construct Mapper Graphs for Topological and
Exploratory Data Analysis
mappestRisk Create Maps Forecasting Risk of Pest Occurrence
mappings Functions for Transforming Categorical
Variables
mapplots Data Visualisation on Maps
mappoly Genetic Linkage Maps in Autopolyploids
mappp Map in Parallel with Progress
mapproj Map Projections
maps Draw Geographical Maps
mapsPERU Maps of Peru
mapsRinteractive Local Adaptation and Evaluation of Raster Maps
mapsapi 'sf'-Compatible Interface to 'Google Maps' APIs
mapscanner Print Maps, Draw on Them, Scan Them Back in
mapsf Thematic Cartography
maptiles Download and Display Map Tiles
maptpx MAP Estimation of Topic Models
maptree Mapping, Pruning, and Graphing Tree Models
mapview Interactive Viewing of Spatial Data in R
mapycusmaximus Focus-Glue-Context Fisheye Transformations for
Spatial Visualization
maq Multi-Armed Qini
maraca The Maraca Plot: Visualizing Hierarchical
Composite Endpoints
marble Robust Marginal Bayesian Variable Selection for
Gene-Environment Interactions
march Markov Chains
marcher Migration and Range Change Estimation in R
marcox Marginal Hazard Ratio Estimation in Clustered
Failure Time Data
marelac Tools for Aquatic Sciences
marg Approximate Marginal Inference for
Regression-Scale Models
margaret Scientometric Analysis Minciencias
marginaleffects Predictions, Comparisons, Slopes, Marginal
Means, and Hypothesis Tests
marginalizedRisk Estimating Marginalized Risk
marginme Estimation of Relative Risks, Risk Differences,
and Marginal Effects from Mixed Models Using
Marginal Standardization
margins Marginal Effects for Model Objects
marimekko Marimekko Plots for 'ggplot2'
marinepredator Marine Predators Algorithm
mark Miscellaneous, Analytic R Kernels
markdown Render Markdown with 'commonmark'
markdownInput Shiny Module for a Markdown Input with Result
Preview
marked Mark-Recapture Analysis for Survival and
Abundance Estimation
markerpen Marker Gene Detection via Penalized Principal
Component Analysis
marketr Tidy Calculation of Marketing Metrics Plus
Quick Analysis
markets Estimation Methods for Markets in Equilibrium
and Disequilibrium
markmyassignment Automatic Marking of R Assignments
markophylo Markov Chain Models for Phylogenetic Trees
markovMSM Methods for Checking the Markov Condition in
Multi-State Survival Data
markovchain Easy Handling Discrete Time Markov Chains
markovmix Mixture of Markov Chains with Support of Higher
Orders and Multiple Sequences
markowitz Markowitz Criterion
markstat Mark Correlation Functions for Spatial Point
Patterns
marlod Marginal Modeling for Exposure Data with Values
Below the LOD
marmap Import, Plot and Analyze Bathymetric and
Topographic Data
marqLevAlg A Parallelized General-Purpose Optimization
Based on Marquardt-Levenberg Algorithm
marquee Markdown Parser and Renderer for R Graphics
marradistrees Plots a Tree-Like Representation of a Numerical
Variable (Marradi's Tree)
marray Exploratory analysis for two-color spotted
microarray data
mars Meta Analysis and Research Synthesis
marsearth Portable Mars Runtime Replay
marsrad Mars Solar Radiation
marsruntime Portable Mars Runtime Replay
mas Multi-Population Association Studies
masc Simulate the Multi-Attribute Search and Choice
(MASC) Model
mascarade Generating Cluster Masks for Single-Cell
Dimensional Reduction Plots
mase Model-Assisted Survey Estimators
mashr Multivariate Adaptive Shrinkage
maskRangeR Mask Species Geographic Ranges
maskedcauses Likelihood Models for Systems with Masked
Component Cause of Failure
maskedhaz Masked-Cause Likelihood Models for Series
Systems with Arbitrary Hazard Components
maskr Visual Class for Vectors with Non-Publishing
Requirements
massProps Calculate Mass Properties and Uncertainties of
Tree Structures
masscor Mass Measurement Corrections
massiveGST Competitive Gene Sets Test with the
Mann-Whitney-Wilcoxon Test
mastif Mast Inference and Forecasting
matRiks Generates Raven-Like Matrices According to
Rules
matchFeat One-to-One Feature Matching
matchMulti Optimal Multilevel Matching using a Network
Algorithm
matchedcc 'Stata'-Like Matched Case-Control Analysis
matchingMarkets Analysis of Stable Matchings
matchingR Matching Algorithms in R and C++
matchmaker Flexible Dictionary-Based Cleaning
matchpointR Tidy Access to Women's Tennis Association (WTA)
Data
matchr Pattern Matching and Enumerated Types in R
matconv A Code Converter from the Matlab/Octave
Language to R
mateable Assess Mating Potential in Space and Time
materialmodifier Apply Photo Editing Effects
mathjaxr Using 'Mathjax' in Rd Files
mathpix Support for the 'Mathpix' API (Image to
'LaTeX')
maths.genealogy Mathematics PhD Genealogy Data and Plotting
matlab 'MATLAB' Emulation Package
matlab2r Translation Layer from MATLAB to R
matlabr An Interface for MATLAB using System Calls
matlib Matrix Functions for Teaching and Learning
Linear Algebra and Multivariate Statistics
matman Material Management
matpow Matrix Powers
matrans Model Averaging-Assisted Optimal Transfer
Learning
matricks Useful Tricks for Matrix Manipulation
matrisk Macroeconomic-at-Risk
matrixCorr Collection of Correlation, Agreement, and
Reliability Estimators
matrixNormal The Matrix Normal Distribution
matrixProfile Matrix Profile
matrixStats Functions that Apply to Rows and Columns of
Matrices (and to Vectors)
matrixTests Fast Statistical Hypothesis Tests on Rows and
Columns of Matrices
matrixcalc Collection of Functions for Matrix Calculations
matrixcut Determines Clustering Threshold Based on
Similarity Values
matrixdist Statistics for Matrix Distributions
matrixmodp Working with Matrices over Finite Prime Fields
matrixprofiler Matrix Profile for R
matrixsampling Simulations of Matrix Variate Distributions
matrixset Creating, Manipulating and Annotating Matrix
Ensemble
matriz Literature Matrix Synthesis Tools for
Epidemiology and Health Science Research
matsbyname An Implementation of Matrix Mathematics that
Respects Row and Column Names
matsindf Matrices in Data Frames
matuR Athlete Maturation and Biobanding
mau Decision Models with Multi Attribute Utility
Theory
mauricer Work with 'BEAST2' Packages
maxLik Maximum Likelihood Estimation and Related Tools
maxRgain Maximizing Polyclonal Selection Gains Using
Integer Programming
maxaltall 'FASTA' ML and ‘altall’ Sequences from IQ-TREE
.state Files
maxbootR Efficient Bootstrap Methods for Block Maxima
maxcombo The Group Sequential Max-Combo Test for
Comparing Survival Curves
maxent.ot Perform Phonological Analyses using Maximum
Entropy Optimality Theory
maxentcpp Maximum Entropy Species Distribution Modeling
('C++' Implementation)
maximin Space-Filling Design under Maximin Distance
maxlike Model Species Distributions by Estimating the
Probability of Occurrence Using Presence-Only
Data
maxmatching Maximum Matching for General Weighted Graph
maxnet Fitting 'Maxent' Species Distribution Models
with 'glmnet'
maxstablePCA Apply a PCA Like Procedure Suited for
Multivariate Extreme Value Distributions
maxstat Maximally Selected Rank Statistics
maybe The Maybe Monad
mazealls Generate Recursive Mazes
mazeinda Monotonic Association on Zero-Inflated Data
mazing Utilities for Making and Plotting Mazes
mbRes Exploration of Multiple Biomarker Responses
using Effect Size
mbX A Comprehensive Microbiome Data Processing
Pipeline
mbbefd Maxwell Boltzmann Bose Einstein Fermi Dirac
Distribution and Destruction Rate Modelling
mbend Matrix Bending
mbest Moment-Based Estimation for Hierarchical Models
mbg Model-Based Geostatistics
mbir Magnitude-Based Inferences
mblm Median-Based Linear Models
mbmixture Microbiome Mixture Analysis
mboost Model-Based Boosting
mbr Mass Balance Reconstruction
mbrdr Model-Based Response Dimension Reduction
mbreaks Estimation and Inference for Structural Breaks
in Linear Regression Models
mbsts Multivariate Bayesian Structural Time Series
mc2d Tools for Two-Dimensional Monte-Carlo
Simulations
mcMST A Toolbox for the Multi-Criteria Minimum
Spanning Tree Problem
mcODE Monte Carlo Solution of First Order
Differential Equations
mcStats Visualize Results of Statistical Hypothesis
Tests
mcanalysis Markov Chain Analysis for Structural Behaviour
and Stability
mcauchyd Multivariate Cauchy Distribution;
Kullback-Leibler Divergence
mcb Model Confidence Bounds
mcbette Model Comparison Using 'babette'
mcbiopi Matrix Computation Based Identification of
Prime Implicants
mcboost Multi-Calibration Boosting
mcca Multi-Category Classification Accuracy
mccca Visualizing Class Specific Heterogeneous
Tendencies in Categorical Data
mcclust Process an MCMC Sample of Clusterings
mccount Estimate Recurrent Event Burden with Competing
Risks
mcdabench Benchmarking for Multi-Criteria Decision
Analysis
mcemGLM Maximum Likelihood Estimation for Generalized
Linear Mixed Models
mcen Multivariate Cluster Elastic Net
mcga Machine Coded Genetic Algorithms for
Real-Valued Optimization Problems
mcgf Markov Chain Gaussian Fields Simulation and
Parameter Estimation
mcgibbsit Warnes and Raftery's 'MCGibbsit' MCMC Run
Length and Convergence Diagnostic
mcglm Multivariate Covariance Generalized Linear
Models
mclink Metabolic Pathway Completeness and Abundance
Calculation
mclm Mastering Corpus Linguistics Methods
mclogit Multinomial Logit Models for Categorical
Responses and Discrete Choices
mclust Gaussian Mixture Modelling for Model-Based
Clustering, Classification, and Density
Estimation
mclustAddons Addons for the 'mclust' Package
mclustcomp Measures for Comparing Clusters
mcmapper Mapping First Moment and C-Statistic to the
Parameters of Distributions for Risk
mcmc Markov Chain Monte Carlo
mcmcderive Derive MCMC Parameters
mcmcensemble Ensemble Sampler for Affine-Invariant MCMC
mcmcr Manipulate MCMC Samples
mcmcsae Markov Chain Monte Carlo Small Area Estimation
mcmcse Monte Carlo Standard Errors for MCMC
mcmodule Modular Monte Carlo Risk Analysis
mcmsector Estimating Subnational Public and Private
Contraceptive Supply Shares Over Time
mcmsupply Estimating Public and Private Sector
Contraceptive Market Supply Shares
mco Multiple Criteria Optimization Algorithms and
Related Functions
mcompanion Objects and Methods for Multi-Companion
Matrices
mcount Marginalized Count Regression Models
mcp Regression with Multiple Change Points
mcparallelDo A Simplified Interface for Running Commands on
Parallel Processes
mcprofile Testing Generalized Linear Hypotheses for
Generalized Linear Model Parameters by Profile
Deviance
mcprogress Progress Bars and Messages for Parallel
Processes
mcptools Model Context Protocol Servers and Clients
mcqAnalysis Classical Test Theory Item Analysis for
Multiple-Choice Tests
mcr Method Comparison Regression
mcrPioda Method Comparison Regression - Mcr Fork for M-
And MM-Deming Regression
mcradds Processing and Analyzing of Diagnostics Trials
mcreplicate Multi-Core Replicate
mcstatsim Monte Carlo Statistical Simulation Tools Using
a Functional Approach
mctest Multicollinearity Diagnostic Measures
mctq Tools to Process the Munich ChronoType
Questionnaire (MCTQ)
mcvis Multi-Collinearity Visualization
mcwr Markov Chains with Rewards
md Selecting Bandwidth for Kernel Density
Estimator with Minimum Distance Method
md.log Produces Markdown Log File with a Built-in
Function Call
md4r Markdown Parser Implemented using the 'MD4C'
Library
mda Mixture and Flexible Discriminant Analysis
mda.biber Functions for Multi-Dimensional Analysis
mdatools Multivariate Data Analysis for Chemometrics
mdbplyr A Native Lazy Analytical Backend for MongoDB
mdbr Work with Microsoft Access Files
mddmaps Download World Mammal Maps
mde Missing Data Explorer
mded Measuring the Difference Between Two Empirical
Distributions
mdendro Extended Agglomerative Hierarchical Clustering
mdftracks Read and Write 'MTrackJ Data Files'
mdgc Missing Data Imputation Using Gaussian Copulas
mdir.logrank Multiple-Direction Logrank Test
mdmb Model Based Treatment of Missing Data
mdpeer Graph-Constrained Regression with Enhanced
Regularization Parameters Selection
mds Medical Devices Surveillance
mdsOpt Searching for Optimal MDS Procedure for Metric
and Interval-Valued Data
mdscore Improved Score Tests for Generalized Linear
Models
mdsr Complement to 'Modern Data Science with R'
mdw Maximum Diversity Weighting
meanShiftR A Computationally Efficient Mean Shift
Implementation
meanr Sentiment Analysis Scorer
meantables Make Quick Descriptive Tables for Continuous
Variables
measles Measles Epidemiological Models
measr Bayesian Psychometric Measurement Using 'Stan'
measuRing Detection and Control of Tree-Ring Widths on
Scanned Image Sections
measureR Tools for Educational and Psychological
Measurement
measurementProtocol Send Data from R to the Measurement Protocol
measurements Tools for Units of Measurement
measures Performance Measures for Statistical Learning
meboot Maximum Entropy Bootstrap for Time Series
meconetcomp Compare Microbial Networks of 'trans_network'
Class of 'microeco' Package
mecor Measurement Error Correction in Linear Models
with a Continuous Outcome
mecoturn Decipher Microbial Turnover along a Gradient
mectx MEchanistic Clustering - Treatment eXposure
Framework
medExtractR Extraction of Medication Information from
Clinical Text
medScan Large Scale Single Mediator Hypothesis Testing
meddra.read Load and Use 'MedDRA' Data for Clinical Trials
mederrRank Bayesian Methods for Identifying the Most
Harmful Medication Errors
medfate Mediterranean Forest Simulation
medfateland Mediterranean Landscape Simulation
medflex Flexible Mediation Analysis Using Natural
Effect Models
mediateP Mediation Analysis Based on the Product Method
mediation Causal Mediation Analysis
mediationsens Simulation-Based Sensitivity Analysis for
Causal Mediation Studies
medicalcoder A Unified and Longitudinally Aware Framework
for ICD-Based Comorbidity Assessment
medicaldata Data Package for Medical Datasets
medicare Tools for Obtaining and Cleaning Medicare
Public Use Files
meditations Prints a Random Quote from Marcus Aurelius'
Book Meditations
medparser MedPC Text Parser
medrxivr Access and Search MedRxiv and BioRxiv Preprint
Data
meerva Analysis of Data with Measurement Error Using a
Validation Subsample
meetupr Access Meetup Data
mefa Multivariate Data Handling in Ecology and
Biogeography
mefa4 Multivariate Data Handling with S4 Classes and
Sparse Matrices
megatrees Subsets of Randomly Selected Phylogenies from
Existing Mega-Phylogenies
meifly Interactive Model Exploration using 'GGobi'
mekko Variable Width Bar Charts: Bar Mekko
melidosData Load Data from the MeLiDos Field Study
melt Multiple Empirical Likelihood Tests
meltt Matching Event Data by Location, Time and Type
mem The Moving Epidemic Method
memapp The Moving Epidemic Method Web Application
meme Create Meme
memery Internet Memes for Data Analysts
memgene Spatial Pattern Detection in Genetic Distance
Data Using Moran's Eigenvector Maps
memify Constructing Functions That Keep State
memisc Management of Survey Data and Presentation of
Analysis Results
memo Hashmaps and Memoization (in-Memory Caching of
Repeated Computations)
memofunc Function Memoization
memoiR R Markdown and Bookdown Templates to Publish
Documents
memoise 'Memoisation' of Functions
memor A 'rmarkdown' Template that Can be Highly
Customized
memoria Quantifying Ecological Memory in
Palaeoecological Datasets and Other Long
Time-Series
memshare Shared Memory Multithreading
memuse Memory Estimation Utilities
merDeriv Case-Wise and Cluster-Wise Derivatives for
Mixed Effects Models
merTools Tools for Analyzing Mixed Effect Regression
Models
mergedblocks Merged Block Randomization
mergen AI-Driven Code Generation, Explanation and
Execution for Data Analysis
mergenstudio 'Mergen' Studio: An 'RStudio' Addin Wrapper for
the 'Mergen' Package
mergingTools Tools to Merge Hardware Event Monitors (HEMs)
Coming from Separate Subexperiments into One
Single Dataframe
mermboost Gradient Boosting for Generalized Additive
Mixed Models
merror Accuracy and Precision of Measurements
mesonet Download and Process Oklahoma Mesonet Data
messaging Conveniently Issue Messages, Warnings, and
Errors
messi Mediation with External Summary Statistic
Information
messy Create Messy Data from Clean Data Frames
messy.cats Employs String Distance Tools to Help Clean
Categorical Data
messydates A Flexible Class for Messy Dates
metANN Metaheuristic and Gradient-Based Optimization
for Neural Network Training and Continuous
Problems
metR Tools for Easier Analysis of Meteorological
Fields
metRology Support for Metrological Applications
meta General Package for Meta-Analysis
meta.shrinkage Meta-Analyses for Simultaneously Estimating
Individual Means
meta4diag Meta-Analysis for Diagnostic Test Studies
metaBLUE BLUE for Combining Location and Scale
Information in a Meta-Analysis
metaBMA Bayesian Model Averaging for Random and Fixed
Effects Meta-Analysis
metaCluster Metagenomic Clustering
metaConvert An Automatic Suite for Estimation of Various
Effect Size Measures
metaDigitise Extract and Summarise Data from Published
Figures
metaDyn Multivariate Meta-Analysis of Dynamic Model
Estimates
metaEnsembleR Automated Intuitive Package for Meta-Ensemble
Learning
metaGE Meta-Analysis for Detecting Genotype x
Environment Associations
metaHelper Transforms Statistical Measures Commonly Used
for Meta-Analysis
metaLik Likelihood Inference in Meta-Analysis and
Meta-Regression Models
metaLong Longitudinal Meta-Analysis with Robust Variance
Estimation and Sensitivity Analysis
metaMA Meta-Analysis for MicroArrays
metaRNASeq Meta-Analysis of RNA-Seq Data
metaRange Framework to Build Mechanistic and Metabolic
Constrained Species Distribution Models
metaSDTreg Regression Models for Meta Signal Detection
Theory
metaSEM Meta-Analysis using Structural Equation
Modeling
metaSVR Support Vector Regression with Metaheuristic
Algorithms Optimization
metaSurvival Meta-Analysis of a Single Survival Curve
metabias Meta-Analysis for Within-Study and/or
Across-Study Biases
metaboData Example Metabolomics Data Sets
metabodecon Deconvolution and Alignment of 1d NMR Spectra
metabolic Datasets and Functions for Reproducing
Meta-Analyses
metabook Data Sets and Code for "Meta-Analysis with R"
metabup Bayesian Meta-Analysis Using Basic Uncertain
Pooling
metacart Meta-CART: A Flexible Approach to Identify
Moderators in Meta-Analysis
metacoder Tools for Parsing, Manipulating, and Graphing
Taxonomic Abundance Data
metacom Analysis of the 'Elements of Metacommunity
Structure'
metaconfoundr Visualize 'Confounder' Control in Meta-Analyses
metacor Meta-Analytic Effect Size Calculation for
Pre-Post Designs with Correlation Imputation
metacore A Centralized Metadata Object Focus on Clinical
Trial Data Programming Workflows
metadat Meta-Analysis Datasets
metadeconfoundR Covariate-Sensitive Analysis of Cross-Sectional
High-Dimensional Data
metadynminer Tools to Read, Analyze and Visualize
Metadynamics HILLS Files from 'Plumed'
metadynminer3d Tools to Read, Analyze and Visualize
Metadynamics 3D HILLS Files from 'Plumed'
metafolio Metapopulation Simulations for Conserving
Salmon Through Portfolio Optimization
metafor Meta-Analysis Package for R
metaforest Exploring Heterogeneity in Meta-Analysis using
Random Forests
metafrontier Analysis of Metafrontier Models for Efficiency
and Productivity
metafuse Fused Lasso Approach in Regression Coefficient
Clustering
metagam Meta-Analysis of Generalized Additive Models
metagear Comprehensive Research Synthesis Tools for
Systematic Reviews and Meta-Analysis
metaggR Calculate the Knowledge-Weighted Estimate
metagroup Meaningful Grouping of Studies in Meta-Analysis
metaheuristicOpt Metaheuristic for Optimization
metainc Assessment of Inconsistency in Meta-Analysis
using Decision Thresholds
metainsight A 'shiny' Application for Network Meta-Analysis
metalcor Meta-Analysis of Correlated Genetic Association
Studies
metalite ADaM Metadata Structure
metalite.ae Adverse Events Analysis Using 'metalite'
metalite.sl Subject-Level Analysis Using 'metalite'
metalite.table1 Interactive Table of Descriptive Statistics in
HTML
metamedian Meta-Analysis of Medians
metamer Create Data with Identical Statistics
metamisc Meta-Analysis of Diagnosis and Prognosis
Research Studies
metamorphr Tidy and Streamlined Metabolomics Data
Workflows
metan Multi Environment Trials Analysis
metanetwork Handling and Representing Trophic Networks in
Space and Time
metansue Meta-Analysis of Studies with Non-Statistically
Significant Unreported Effects
metap Meta-Analysis of Significance Values
metaphonebr Custom 'MetaphoneBR' Phonetic Encoding for
Brazilian Names
metaplot Data-Driven Plot Design
metaplus Robust Meta-Analysis and Meta-Regression
metapod Meta-Analyses on P-Values of Differential
Analyses
metapost Interface to 'MetaPost'
metapower Power Analysis for Meta-Analysis
metapro Robust P-Value Combination Methods
metaprotr Metaproteomics Post-Processing Analysis
metaquant Meta-Analysis of Quantiles and Functions of
Quantiles
metarep Replicability-Analysis Tools for Meta-Analysis
metasens Statistical Methods for Sensitivity Analysis in
Meta-Analysis
metasnf Meta Clustering with Similarity Network Fusion
metasplines Pool Literature-Based and Individual
Participant Data Based Spline Estimates
metasurvey Reproducible Survey Data Processing with Step
Pipelines
metatest Fit and Test Metaregression Models
metathis HTML Metadata Tags for 'R Markdown' and 'Shiny'
metatools Enable the Use of 'metacore' to Help Create and
Check Dataset
metaumbrella Umbrella Review Package for R
metavcov Computing Variances and Covariances,
Visualization and Missing Data Solution for
Multivariate Meta-Analysis
metaviz Forest Plots, Funnel Plots, and Visual Funnel
Plot Inference for Meta-Analysis
metawho Meta-Analytical Implementation to Identify Who
Benefits Most from Treatments
meteR Fitting and Plotting Tools for the Maximum
Entropy Theory of Ecology (METE)
meteo RFSI & STRK Interpolation for Meteo and
Environmental Variables
meteoEVT Computation and Visualization of Energetic and
Vortical Atmospheric Quantities
meteoForecast Numerical Weather Predictions
meteoland Landscape Meteorology Tools
meteor Meteorological Data Manipulation
meteospain Access to Spanish Meteorological Stations
Services
metevalue E-Value in the Omics Data Association Studies
methFuse Functional Segmentation of the Methylome
methcon5 Identify and Rank CpG DNA Methylation
Conservation Along the Human Genome
methrix Fast and efficient summarization of generic
bedGraph files from Bisufite sequencing
methylumi Handle Illumina methylation data
metools Macroeconomics Tools
metrica Prediction Performance Metrics
metricminer Mine Metrics from Common Places on the Web
metrix Water Quality Metrics Calculator
metro Washington Metropolitan Area Transit Authority
API
metropolis The Metropolis Algorithm
metrosp 'São Paulo' Metro Passenger Demand Data
mets Analysis of Multivariate Event Times
metsyn Interface with the Meteo France Synop Data API
mev Modelling of Extreme Values
mevr Fitting the Metastatistical Extreme Value
Distribution MEVD
mewAvg A Fixed Memeory Moving Expanding Window Average
mexhaz Mixed Effect Excess Hazard Models
mexicolors Mexican Politics-Inspired Color Palette
Generator
mfGARCH Mixed-Frequency GARCH Models
mfaces Fast Covariance Estimation for Multivariate
Sparse Functional Data
mfclim Download Archived Meteorological Data from
'Meteo-France'
mfcurve Multi-Factor Curve Analysis for Grouped Data in
'R'
mfdb MareFrame DB Querying Library
mfp Multivariable Fractional Polynomials
mfp2 Multivariable Fractional Polynomial Models with
Extensions
mfpp 'Matrix-Based Flexible Project Planning'
mfrmr Estimation and Diagnostics for Many-Facet
Measurement Models
mfx Marginal Effects, Odds Ratios and Incidence
Rate Ratios for GLMs
mgarchBEKK Simulating, Estimating and Diagnosing MGARCH
(BEKK and mGJR) Processes
mgc Multiscale Graph Correlation
mgcViz Visualisations for Generalized Additive Models
mgee2 Marginal Analysis of Misclassified Longitudinal
Ordinal Data
mggd Multivariate Generalised Gaussian Distribution;
Kullback-Leibler Divergence
mgi.report.reader Read Mouse Genome Informatics Reports
mglasso Multiscale Graphical Lasso
mglmn Model Averaging for Multivariate GLM with Null
Models
mgm Estimating Time-Varying k-Order Mixed Graphical
Models
mgpStreamingSDK Interact with the Maxar MGP Streaming API
mgsub Safe, Multiple, Simultaneous String
Substitution
mgwnbr Multiscale Geographically Weighted Negative
Binomial Regression
mgwrhw Displays GWR (Geographically Weighted
Regression) and Mixed GWR Output and Map
mgwrsar GWR, Mixed GWR with Spatial Autocorrelation and
Multiscale GWR/GTWR (Top-Down Scale Approaches)
mhazard Nonparametric and Semiparametric Methods for
Multivariate Failure Time Data
mhcnuggetsr Call MHCnuggets
mhn The Modified Half-Normal Distribution
mhpfilter Modified Hodrick-Prescott Filter with Optimal
Smoothing Parameter Selection
mhsmm Inference for Hidden Markov and Semi-Markov
Models
mhurdle Multiple Hurdle Tobit Models
mi Missing Data Imputation and Model Checking
mi4p Multiple Imputation for Proteomics
miCoPTCM Promotion Time Cure Model with Mis-Measured
Covariates
miLAG Calculates Microbial Lag Duration (on the
Population Level) from Provided Growth Curve
Data
miLineage Association Tests for Microbial Lineages on a
Taxonomic Tree
miRNAss Genome-Wide Discovery of Pre-miRNAs with few
Labeled Examples
miRecSurv Left-Censored Recurrent Events Survival Models
miRtest Combined miRNA- And mRNA-Testing
mia Microbiome analysis
miapack Marginalization over Incomplete Auxiliaries
micEcon Microeconomic Analysis and Modelling
micEconAids Demand Analysis with the Almost Ideal Demand
System (AIDS)
micEconCES Analysis with the Constant Elasticity of
Substitution (CES) Function
micEconDistRay Econometric Production Analysis with Ray-Based
Distance Functions
micEconIndex Price and Quantity Indices
micEconSNQP Symmetric Normalized Quadratic Profit Function
micar 'Mica' Data Web Portal Client
micd Multiple Imputation in Causal Graph Discovery
mice Multivariate Imputation by Chained Equations
miceDRF Imputation with 'mice' and Distributional
Random Forests
miceFast Fast Imputations Using 'Rcpp' and 'Armadillo'
miceRanger Multiple Imputation by Chained Equations with
Random Forests
miceadds Some Additional Multiple Imputation Functions,
Especially for 'mice'
miceafter Data and Statistical Analyses after Multiple
Imputation
micemd Multiple Imputation by Chained Equations with
Multilevel Data
micer Map Image Classification Efficacy
michelRodange The Works (in Luxembourguish) of Michel Rodange
miclust Multiple Imputation in Cluster Analysis
micompr Multivariate Independent Comparison of
Observations
microCRAN Hosting an Independent CRAN Repository
microPop Process-Based Modelling of Microbial
Populations
microbats An Implementation of Bat Algorithm in R
microbenchmark Accurate Timing Functions
microbial Do 16s Data Analysis and Generate Figures
microbiome Microbiome Analytics
microbiomeMQC Calculate 4 Key Reporting Measures
microdiluteR Analysis of Broth Microdilution Assays
microeco Microbial Community Ecology Data Analysis
microinverterdata Collect your Microinverter Data
micromap Linked Micromap Plots
micromapST Linked Micromap Plots for U. S. and Other
Geographic Areas
micromodal Create Simple and Elegant Modal Dialogs in
'shiny'
micronutr Determining Vitamin and Mineral Status of
Populations
micropan Microbial Pan-Genome Analysis
microplot Microplots (Sparklines) in 'LaTeX', 'Word',
'HTML', 'Excel'
microseq Basic Biological Sequence Handling
microsimulation Discrete Event Simulation in R and C++, with
Tools for Cost-Effectiveness Analysis
microsynth Synthetic Control Methods with Micro- And
Meso-Level Data
micsr Microeconometrics with R
micss Modified Iterative Cumulative Sum of Squares
Algorithm
micvar Order Selection in Vector Autoregression by
Mean Square Information Criteria
midas Turn HTML 'Shiny'
midas2 Bayesian Platform Design with Subgroup Efficacy
Exploration(MIDAS-2)
midasml Estimation and Prediction Methods for
High-Dimensional Mixed Frequency Time Series
Data
midasr Mixed Data Sampling Regression
midastouch Multiple Imputation by Distance Aided Donor
Selection
midfieldr Tools and Methods for Working with MIDFIELD
Data in 'R'
midi Microstructure Information from Diffusion
Imaging
midnight A 'tidymodels' Engine and Other Extensions for
the 'midr' Package
midoc A Decision-Making System for Multiple
Imputation
midr Learning from Black-Box Models by Maximum
Interpretation Decomposition
midrangeMCP Multiple Comparisons Procedures Based on
Studentized Midrange and Range Distributions
miebl Performance Criteria Modeler for Discrete Trial
Training
miesmuschel Mixed Integer Evolution Strategies
mifa Multiple Imputation for Exploratory Factor
Analysis
mig Multivariate Inverse Gaussian Distribution
migest Tools for Estimating, Measuring and Working
with Migration Data
mighty.metadata Manage 'CDISC' 'ADaM' Dataset Specifications in
'YAML' Format
migraph Inferential Methods for Multimodal and Other
Networks
migrate Create Credit State Migration (Transition)
Matrices
migration.indices Migration Indices
migui Graphical User Interface to the 'mi' Package
miic Learning Causal or Non-Causal Graphical Models
Using Information Theory
mikropml User-Friendly R Package for Supervised Machine
Learning Pipelines
mildsvm Multiple-Instance Learning with Support Vector
Machines
milorGWAS Mixed Logistic Regression for Genome-Wide
Analysis Studies (GWAS)
milr Multiple-Instance Logistic Regression with
LASSO Penalty
mimar Compact Multiple Imputation, Assessment, and
Reporting
mimdo Multivariate Imputation by Mahalanobis Distance
Optimization
mime Map Filenames to MIME Types
mimiSBM Mixture of Multilayer Integrator Stochastic
Block Models
mimsy Calculate MIMS Dissolved Gas Concentrations
Without Getting a Headache
min2HalfFFD Minimally Changed Two-Level Half-Fractional
Factorial Designs
minFactorial All Possible Minimally Changed Factorial Run
Orders
minMSE Implementation of the minMSE Treatment
Assignment Method for One or Multiple Treatment
Groups
minSNPs Resolution-Optimised SNPs Searcher
minb Multiple-Inflated Negative Binomial Model
mind Multivariate Model Based Inference for Domains
mindr Generate Mind Maps
mineCitrus Extract and Analyze Median Molecule Intensity
from 'citrus' Output
mineSweepR Mine Sweeper Game
minerva Maximal Information-Based Nonparametric
Exploration for Variable Analysis
minesweeper Play Minesweeper
minet Mutual Information NETworks
minfi Analyze Illumina Infinium DNA methylation
arrays
mini007 Lightweight Framework for Orchestrating
Multi-Agent Large Language Models
miniCRAN Create a Mini Version of CRAN Containing Only
Selected Packages
miniGUI Tcl/Tk Quick and Simple Function GUI
miniLNM Miniature Logistic-Normal Multinomial Models
miniMeta Web Application to Run Meta-Analyses
miniPCH Survival Distributions with Piece-Wise Constant
Hazards
miniUI Shiny UI Widgets for Small Screens
minic Minimization Methods for Ill-Conditioned
Problems
minidown Create Simple Yet Powerful HTML Documents with
Light Weight CSS Frameworks
minimalRSD Minimally Changed CCD and BBD
minimalistGODB Build a Minimalist Gene Ontology (GO) Database
(GODB)
minimap Create Tile Grid Maps
minimax The Minimax Distribution Family
minimaxALT Generate Optimal Designs of Accelerated Life
Test using PSO-Based Algorithm
minimaxApprox Implementation of Remez Algorithm for
Polynomial and Rational Function Approximation
minioclient Interface to the 'MinIO' Client
minipdf PDF Document Creator
minired R Interface to 'Redatam' Library
minorparties Quantitatively Analyze Minor Political Parties
minpack.lm R Interface to the Levenberg-Marquardt
Nonlinear Least-Squares Algorithm Found in
MINPACK, Plus Support for Bounds
minqa Derivative-Free Optimization Algorithms by
Quadratic Approximation
minque Various Linear Mixed Model Analyses
minsample1 The Minimum Sample Size
minsample2 The Minimum Sample Size
minter Effect Sizes for Meta-Analysis of Interactions
from Factorial Experiments
minty Minimal Type Guesser
mintyr Streamlined Data Processing Tools for Genomic
Selection
mipfp Multidimensional Iterative Proportional Fitting
and Alternative Models
mipplot An Open-Source Tool for Visualization of
Climate Mitigation Scenarios
mirai Minimalist Async Evaluation Framework for R
mirrorselect Test CRAN/Bioconductor Mirror Speed
mirt Multidimensional Item Response Theory
mirtCAT Computerized Adaptive Testing with
Multidimensional Item Response Theory
misPRIME Partial Replacement Imputation Estimation for
Missing Covariates
misaem Linear Regression and Logistic Regression with
Missing Covariates
misc Miscellaneous Functions for Data and Geospatial
Work
misc3d Miscellaneous 3D Plots
miscF Miscellaneous Functions
miscFuncs Miscellaneous Useful Functions Including LaTeX
Tables, Kalman Filtering, QQplots with
Simulation-Based Confidence Intervals, Linear
Regression Diagnostics and Development Tools
miscIC Misclassified Interval Censored Time-to-Event
Data
miscTools Miscellaneous Tools and Utilities
misclassGLM Computation of Generalized Linear Models with
Misclassified Covariates Using Side Information
miselect Variable Selection for Multiply Imputed Data
misha Toolkit for Analysis of Genomic Data
misl Multiple Imputation by Super Learning
mispitools Missing Person Identification Tools
mispr Multiple Imputation with Sequential Penalized
Regression
missCforest Ensemble Conditional Trees for Missing Data
Imputation
missCompare Intuitive Missing Data Imputation Framework
missDeaths Simulating and Analyzing Time to Event Data in
the Presence of Population Mortality
missDiag Comparing Observed and Imputed Values under MAR
and MCAR
missForest Nonparametric Missing Value Imputation using
Random Forest
missForestPredict Missing Value Imputation using Random Forest
for Prediction Settings
missMDA Handling Missing Values with Multivariate Data
Analysis
missMethods Methods for Missing Data
missPLS Methods and Reproducible Workflows for Partial
Least Squares with Missing Data
missRanger Fast Imputation of Missing Values
missSBM Handling Missing Data in Stochastic Block
Models
missalpha Find Range of Cronbach Alpha with a Dataset
Including Missing Data
missingHE Missing Outcome Data in Health Economic
Evaluation
missoNet Joint Sparse Regression & Network Learning with
Missing Data
misspi Missing Value Imputation in Parallel
missr Classify Missing Data as MCAR, MAR, or MNAR
mistr Mixture and Composite Distributions
mistral Methods in Structural Reliability
misty Miscellaneous Functions 'T. Yanagida'
misuvi Access the Michigan Substance Use Vulnerability
Index (MI-SUVI)
mitey Serial Interval and Case Reproduction Number
Estimation
mitml Tools for Multiple Imputation in Multilevel
Modeling
mitools Tools for Multiple Imputation of Missing Data
mitre Cybersecurity MITRE Standards Data and Digraphs
mix Estimation/Multiple Imputation for Mixed
Categorical and Continuous Data
mixAK Multivariate Normal Mixture Models and Mixtures
of Generalized Linear Mixed Models Including
Model Based Clustering
mixAR Mixture Autoregressive Models
mixKernel Omics Data Integration Using Kernel Methods
mixOmics Omics Data Integration Project
mixPHM Mixtures of Proportional Hazard Models
mixR Finite Mixture Modeling for Raw and Binned Data
mixRaschTools Plotting and Average Theta Functions for
Multiple Class Mixed Rasch Models
mixSPE Mixtures of Power Exponential and Skew Power
Exponential Distributions for Use in
Model-Based Clustering and Classification
mixSSG Clustering Using Mixtures of Sub Gaussian
Stable Distributions
mixbox Observed Fisher Information Matrix for Finite
Mixture Model
mixcat Mixed Effects Cumulative Link and Logistic
Regression Models
mixchar Mixture Model for the Deconvolution of Thermal
Decay Curves
mixcure Mixture Cure Models
mixdir Cluster High Dimensional Categorical Datasets
mixdist Finite Mixture Distribution Models
mixedBayes Bayesian Longitudinal Regularized Quantile
Mixed Model
mixedCCA Sparse Canonical Correlation Analysis for
High-Dimensional Mixed Data
mixedClust Co-Clustering of Mixed Type Data
mixedLSR Mixed, Low-Rank, and Sparse Multivariate
Regression on High-Dimensional Data
mixedMem Tools for Discrete Multivariate Mixed
Membership Models
mixedbiastest Bias Diagnostic for Linear Mixed Models
mixedfact Generate and Analyze Mixed-Level Blocked
Factorial Designs
mixediffusion Mixed-Effects Diffusion Models with General
Drift
mixedsde Estimation Methods for Stochastic Differential
Mixed Effects Models
mixgb Multiple Imputation Through 'XGBoost'
mixhvg Mixture of Multiple Highly Variable Feature
Selection Methods
mixl Simulated Maximum Likelihood Estimation of
Mixed Logit Models for Large Datasets
mixlm Mixed Model ANOVA and Statistics for Education
mixmeta An Extended Mixed-Effects Framework for
Meta-Analysis
mixopt Mixed Variable Optimization
mixpoissonreg Mixed Poisson Regression for Overdispersed
Count Data
mixpower Simulation-Based Power Analysis for
Mixed-Effects Models
mixsmsn Fitting Finite Mixture of Scale Mixture of
Skew-Normal Distributions
mixsqp Sequential Quadratic Programming for Fast
Maximum-Likelihood Estimation of Mixture
Proportions
mixtime Mixed Temporal Vectors and Operations
mixtools Tools for Analyzing Finite Mixture Models
mixtox Dose Response Curve Fitting and Mixture
Toxicity Assessment
mixtree A Statistical Framework for Comparing Sets of
Trees
mixtur Modelling Continuous Report Visual Short-Term
Memory Studies
mixture Mixture Models for Clustering and
Classification
mixvlmc Variable Length Markov Chains with Covariates
mize Unconstrained Numerical Optimization Algorithms
mizer Dynamic Multi-Species Size Spectrum Modelling
mkde 2D and 3D Movement-Based Kernel Density
Estimates (MKDEs)
mkin Kinetic Evaluation of Chemical Degradation Data
mkssd Efficient Multi-Level k-Circulant
Supersaturated Designs
ml Supervised Learning with Mandatory Splits and
Seeds
mlS3 Unified S3 Interface to Machine Learning Models
mlVAR Multi-Level Vector Autoregression
mlapi Abstract Classes for Building 'scikit-learn'
Like API
mlbench Machine Learning Benchmark Problems
mlbplotR Create 'ggplot2' and 'gt' Visuals with Major
League Baseball Logos
mlbstats Major League Baseball Player Statistics
Calculator
mldr Exploratory Data Analysis and Manipulation of
Multi-Label Data Sets
mldr.datasets R Ultimate Multilabel Dataset Repository
mldr.resampling Resampling Algorithms for Multi-Label Datasets
mlearning Machine Learning Algorithms with Unified
Interface and Confusion Matrices
mlegp Maximum Likelihood Estimates of Gaussian
Processes
mlelod MLE for Normally Distributed Data Censored by
Limit of Detection
mlergm Multilevel Exponential-Family Random Graph
Models
mlexperiments Machine Learning Experiments
mlf Machine Learning Foundations
mlfit Iterative Proportional Fitting Algorithms for
Nested Structures
mlflow Interface to 'MLflow'
mlim Single and Multiple Imputation with Automated
Machine Learning
mllrnrs R6-Based ML Learners for 'mlexperiments'
mlmRev Examples from Multilevel Modelling Software
Review
mlma Multilevel Mediation Analysis
mlmc Multi-Level Monte Carlo
mlmhelpr Multilevel/Mixed Model Helper Functions
mlmi Maximum Likelihood Multiple Imputation
mlmoderator Probing, Plotting, and Interpreting Multilevel
Interaction Effects
mlmpower Power Analysis and Data Simulation for
Multilevel Models
mlmtools Multi-Level Model Assessment Kit
mlogit Multinomial Logit Models
mlogitBMA Bayesian Model Averaging for Multinomial Logit
Models
mlpack 'Rcpp' Integration for the 'mlpack' Library
mlpwr A Power Analysis Toolbox to Find Cost-Efficient
Study Designs
mlquantify Algorithms for Class Distribution Estimation
mlr Machine Learning in R
mlr3 Machine Learning in R - Next Generation
mlr3batchmark Batch Experiments for 'mlr3'
mlr3benchmark Analysis and Visualisation of Benchmark
Experiments
mlr3cluster Cluster Extension for 'mlr3'
mlr3data Collection of Machine Learning Data Sets for
'mlr3'
mlr3db Data Base Backend for 'mlr3'
mlr3fairness Fairness Auditing and Debiasing for 'mlr3'
mlr3fda Extending 'mlr3' to Functional Data Analysis
mlr3filters Filter Based Feature Selection for 'mlr3'
mlr3fselect Feature Selection for 'mlr3'
mlr3hyperband Hyperband for 'mlr3'
mlr3inferr Inference on the Generalization Error
mlr3learners Recommended Learners for 'mlr3'
mlr3mbo Flexible Bayesian Optimization
mlr3measures Performance Measures for 'mlr3'
mlr3misc Helper Functions for 'mlr3'
mlr3oml Connector Between 'mlr3' and 'OpenML'
mlr3pipelines Preprocessing Operators and Pipelines for
'mlr3'
mlr3resampling Resampling Algorithms for 'mlr3' Framework
mlr3shiny Machine Learning in 'shiny' with 'mlr3'
mlr3spatial Support for Spatial Objects Within the 'mlr3'
Ecosystem
mlr3spatiotempcv Spatiotemporal Resampling Methods for 'mlr3'
mlr3summary Model and Learner Summaries for 'mlr3'
mlr3superlearner Super Learner Fitting and Prediction
mlr3torch Deep Learning with 'mlr3'
mlr3tuning Hyperparameter Optimization for 'mlr3'
mlr3tuningspaces Search Spaces for 'mlr3'
mlr3verse Easily Install and Load the 'mlr3' Package
Family
mlr3viz Visualizations for 'mlr3'
mlrCPO Composable Preprocessing Operators and
Pipelines for Machine Learning
mlrMBO Bayesian Optimization and Model-Based
Optimization of Expensive Black-Box Functions
mlrintermbo Model-Based Optimization for 'mlr3' Through
'mlrMBO'
mlrpro Stepwise Regression with Assumptions Checking
mlrv Long-Run Variance Estimation in Time Series
Regression
mlsbm Efficient Estimation of Bayesian SBMs & MLSBMs
mlsjunkgen Use the MLS Junk Generator Algorithm to
Generate a Stream of Pseudo-Random Numbers
mlspatial Machine Learning and Mapping for Spatial
Epidemiology
mlstm Multilevel Supervised Topic Models with
Multiple Outcomes
mlstrOpalr Support Compatibility Between 'Maelstrom' R
Packages and 'Opal' Environment
mlsurvlrnrs R6-Based ML Survival Learners for
'mlexperiments'
mlt Most Likely Transformations
mlt.docreg Most Likely Transformations: Documentation and
Regression Tests
mltest Classification Evaluation Metrics
mltools Machine Learning Tools
mlts Multilevel Latent Time Series Models with 'R'
and 'Stan'
mlumr Multilevel Unanchored Meta-Regression for
Indirect Treatment Comparisons
mma Multiple Mediation Analysis
mmabig Multiple Mediation Analysis for Big Data Sets
mmand Mathematical Morphology in Any Number of
Dimensions
mmap Map Pages of Memory
mmapcharr Memory-Map Character Files
mmaqshiny Explore Air-Quality Mobile-Monitoring Data
mmb Arbitrary Dependency Mixed Multivariate
Bayesian Models
mmbcv Multistate Model Bias-Corrected Robust Variance
mmc Multivariate Measurement Error Correction
mmcards Playing Cards Utility Functions
mmcm Modified Maximum Contrast Method
mmcmcBayes Multistage MCMC Method for Detecting DMRs
mmconvert Mouse Map Converter
mme Multinomial Mixed Effects Models
mmeln Estimation of Multinormal Mixture Distribution
mmequiv Calculate Standardized Morphine Milligram
Equivalent Doses
mmeta Multivariate Meta-Analysis
mmiCATs Cluster Adjusted t Statistic Applications
mmibain Bayesian Informative Hypotheses Evaluation Web
Applications
mmints Workflows for Building Web Applications
mmirestriktor Informative Hypothesis Testing Web Applications
mmmgee Simultaneous Inference for Multiple Linear
Contrasts in GEE Models
mmod Modern Measures of Population Differentiation
mmodely Modeling Multivariate Origins Determinants -
Evolutionary Lineages in Ecology
mmpca Integrative Analysis of Several Related Data
Matrices
mmr Matrix Multiplication on Data.frames
mmrm Mixed Models for Repeated Measures
mmsample Multivariate Matched Sampling
mmstat4 Access to Teaching Materials from a ZIP File or
GitHub
mmtdiff Moment-Matching Approximation for
t-Distribution Differences
mmtsne Multiple Maps t-SNE
mnda Multiplex Network Differential Analysis (MNDA)
mnet Modeling Group Differences and Moderation
Effects in Statistical Network Models
mnirs Muscle Near-Infrared Spectroscopy Processing
and Analysis
mniw The Matrix-Normal Inverse-Wishart Distribution
mnlfa Moderated Nonlinear Factor Analysis
mnonr A Generator of Multivariate Non-Normal Random
Numbers
mnorm Multivariate Normal Distribution
mnormt The Multivariate Normal and t Distributions,
and Their Truncated Versions
mnpPlasmonR Optical Response of Metallic Nanoparticles
(Drude + Rayleigh)
mnt Affine Invariant Tests of Multivariate
Normality
moRphomenses Geometric Morphometric Tools to Align, Scale,
and Compare "Shape" of Menstrual Cycle Hormones
mob Monotonic Optimal Binning
mobsim Spatial Simulation and Scale-Dependent Analysis
of Biodiversity Changes
moc.gapbk Multi-Objective Clustering Algorithm Guided by
a-Priori Biological Knowledge
mockery Mocking Library for R
mockr Mocking in R
mockthat Function Mocking for Unit Testing
mod Lightweight and Self-Contained Modules for Code
Organization
mod09nrt Extraction of Bands from MODIS Surface
Reflectance Product MOD09 NRT
mod2rm Moderation Analysis for Two-Instance Repeated
Measures Designs
modACDC Association of Covariance for Detecting
Differential Co-Expression
modEvA Model Evaluation and Analysis
modMax Community Structure Detection via Modularity
Maximization
modQR Multiple-Output Directional Quantile Regression
modTurPoint Estimate ED50 Based on Modified Turning Point
Method
modeLLtest Compare Models with Cross-Validated
Log-Likelihood
modeest Mode Estimation
modehunt Multiscale Analysis for Density Functions
model4you Stratified and Personalised Models Based on
Model-Based Trees and Forests
modelDown Make Static HTML Website for Predictive Models
modelObj A Model Object Framework for Regression
Analysis
modelSSE Modelling Infectious Disease Superspreading
from Contact Tracing Data
modelSelection High-Dimensional Model Selection
modelStudio Interactive Studio for Explanatory Model
Analysis
modelbased Estimation of Model-Based Predictions,
Contrasts and Means
modelbpp Model BIC Posterior Probability
modelc A Linear Model to 'SQL' Compiler
modeldata Data Sets Useful for Modeling Examples
modeldatatoo More Data Sets Useful for Modeling Examples
modeldb Fits Models Inside the Database
modeldiag Comprehensive Diagnostics for Statistical
Models
modeldiagramR Generate Model Diagrams for Linear Mixed Effect
Models
modelenv Provide Tools to Register Models for Use in
'tidymodels'
modelfree Model-Free Estimation of a Psychometric
Function
modelimpact Functions to Assess the Business Impact of
Churn Prediction Models
modelr Modelling Functions that Work with the Pipe
modelscompete4 Compare Nested and Non-Nested Structural
Equation Models
modelsummary Summary Tables and Plots for Statistical Models
and Data: Beautiful, Customizable, and
Publication-Ready
modeltests Testing Infrastructure for Broom Model Generics
modeltime The Tidymodels Extension for Time Series
Modeling
modeltime.ensemble Ensemble Algorithms for Time Series Forecasting
with Modeltime
modeltime.resample Resampling Tools for Time Series Forecasting
modeltools Tools and Classes for Statistical Models
modeltuning Model Selection and Tuning Utilities
moder Mode Estimation
moderate.mediation Causal Moderated Mediation Analysis
modernBoot Modern Resampling Methods: Bootstraps, Wild,
Block, Permutation, and Selection Guidance
modernVA An Implementation of Two Modern Education-Based
Value-Added Models
moderndive Tidyverse-Friendly Introductory Linear
Regression
modest Model-Based Dose-Escalation Trials
modesto Modeling and Analysis of Stochastic Systems
modgo Mock Data Generation
modi Multivariate Outlier Detection and Imputation
for Incomplete Survey Data
modifiedmk Modified Versions of Mann Kendall and
Spearman's Rho Trend Tests
modisfast Fast and Efficient Access to MODIS Earth
Observation Data
modmarg Calculating Marginal Effects and Levels with
Errors
modnets Modeling Moderated Networks
modopt.matlab 'MatLab'-Style Modeling of Optimization
Problems
modsem Latent Interaction (and Moderation) Analysis in
Structural Equation Models (SEM)
moduleColor Basic Module Functions
modules Self Contained Units of Source Code
moewishart Mixture-of-Experts Wishart Models for
Covariance Data
mogiw The Marshal–Olkin Generalized Inverse Weibull
Distribution
mojson A Serialization-Style Flattening and
Description for JSON
mokken Conducts Mokken Scale Analysis
molaR Dental Surface Complexity Measurement Tools
mombf Model Selection with Bayesian Methods and
Information Criteria
momentchi2 Moment-Matching Methods for Weighted Sums of
Chi-Squared Random Variables
momentfit Methods of Moments
moments Moments, Cumulants, Skewness, Kurtosis and
Related Tests
momentuHMM Maximum Likelihood Analysis of Animal Movement
Behavior Using Multivariate Hidden Markov
Models
monaco The 'Monaco' Editor as a HTML Widget
monad Operators and Generics for Monads
monashtipr An R API Wrapper for the Monash University
Probabilistic Footy Tipping Competition
mondate Keep Track of Dates in Terms of Months
mongolite Fast and Simple 'MongoDB' Client for R
mongolstats Mongolian 'NSO' 'PXWeb' Data and Boundaries
(Tidy Client)
mongopipe Write MongoDB Queries with R
monitOS Monitoring Overall Survival in Pivotal Trials
in Indolent Cancers
monitoR Acoustic Template Detection in R
monmlp Multi-Layer Perceptron Neural Network with
Optional Monotonicity Constraints
monoClust Perform Monothetic Clustering with Extensions
to Circular Data
monobin Monotonic Binning for Credit Rating Models
monobinShiny Shiny User Interface for 'monobin' Package
monochromeR Easily Create, View and Use Monochrome Colour
Palettes
monocle Clustering, differential expression, and
trajectory analysis for single- cell RNA-Seq
monographaR Taxonomic Monographs Tools
monolix2rx Converts 'Monolix' Models to 'rxode2'
monomvn Estimation for MVN and Student-t Data with
Monotone Missingness
monoreg Bayesian Monotonic Regression Using a Marked
Point Process Construction
monotone Performs Monotone Regression
monotonicity Test for Monotonicity in Expected Asset
Returns, Sorted by Portfolios
monreg Nonparametric Monotone Regression
moocore Core Mathematical Functions for Multi-Objective
Optimization
moodef Defining 'Moodle' Elements from R
moodleR Helper Functions to Work with 'Moodle' Data
moodlequiz R Markdown format for 'Moodle' XML cloze
quizzes
moodlequizR Easily Create Fully Randomized 'Moodle' Test
Questions
moonBook Functions and Datasets for the Book by
Keon-Woong Moon
moonboot m-Out-of-n Bootstrap Functions
moonlit Predicting Moonlight Intensity for a Given Time
and Location
mooplot Graphical Visualizations for Multi-Objective
Optimization
moose Mean Squared Out-of-Sample Error Projection
mop Mobility Oriented-Parity Metric
mopac Collection of Datasets Pertaining to Loop 1
"Mopac"
morepls Interpretation Tools for Partial Least Squares
Regression
morestopwords All Stop Words in One Place
mori Shared Memory for R Objects
morph 3D Segmentation of Voxels into Morphologic
Classes
morphemepiece Morpheme Tokenization
morphemepiece.data Data for Morpheme Tokenization
morpheus Estimate Parameters of Mixtures of Logistic
Regressions
morphomap Morphometric Maps, Bone Landmarking and Cross
Sectional Geometry
morrowplots Historical Agricultural Data from the
University of Illinois
morse Modelling Reproduction and Survival Data in
Ecotoxicology
morseDR Bayesian Inference of Binary, Count and
Continuous Data in Toxicology
morseTKTD Bayesian Inference of TKTD Models
mort Identifying Potential Mortalities and Expelled
Tags in Aquatic Acoustic Telemetry Arrays
mortAAR Analysis of Archaeological Mortality Data
mortSOA Obtain Data from the Society of Actuaries
'Mortality and Other Rate Tables' Site
mortar Standardize Data Science Workflows
mos Simulation and Moment Computation for Order
Statistics
mosaic Project MOSAIC Statistics and Mathematics
Teaching Utilities
mosaicCalc R-Language Based Calculus Operations for
Teaching
mosaicCore Common Utilities for Other MOSAIC-Family
Packages
mosaicData Project MOSAIC Data Sets
mosclust Model Order Selection for Clustering
mosum Moving Sum Based Procedures for Changes in the
Mean
motherduck Utilities for Managing a 'Motherduck' Database
motif Local Pattern Analysis
motifcluster Motif-Based Spectral Clustering of Weighted
Directed Networks
motifmatchr Fast Motif Matching in R
motifr Motif Analysis in Multi-Level Networks
motmot Models of Trait Macroevolution on Trees
motoRneuron Analyzing Paired Neuron Discharge Times for
Time-Domain Synchronization
moult Models for Analysing Moult in Birds
mountainplot Mountain Plots, Folded Empirical Cumulative
Distribution Plots
mousetRajectory Mouse Trajectory Analyses for Behavioural
Scientists
mousetrap Process and Analyze Mouse-Tracking Data
movMF Mixtures of von Mises-Fisher Distributions
move Visualizing and Analyzing Animal Track Data
move2 Processing and Analysing Animal Trajectories
moveEZ Animated Biplots
moveHMM Animal Movement Modelling using Hidden Markov
Models
moveWindSpeed Estimate Wind Speeds from Bird Trajectories
movecost Calculation of Slope-Dependant Accumulated Cost
Surface, Least-Cost Paths, Least-Cost
Corridors, Least-Cost Networks Related to Human
Movement Across the Landscape
movedesign Study Design Toolbox for Movement Ecology
Studies
movegroup Visualizing and Quantifying Space Use Data for
Groups of Animals
movementsync Analysis and Visualisation of Musical Audio and
Video Movement Synchrony Data
movieROC Visualizing the Decision Rules Underlying
Binary Classification
mp Multidimensional Projection Techniques
mpactr Correction of Preprocessed MS Data
mpae Metodos Predictivos de Aprendizaje Estadistico
(Statistical Learning Predictive Methods)
mpath Regularized Linear Models
mpathr Easily Handling Data from the ‘m-Path’ Platform
mpathsenser Process and Analyse Data from m-Path Sense
mpindex Multidimensional Poverty Index (MPI) via the
Alkire-Foster Method
mpitbR Calculate Alkire-Foster Multidimensional
Poverty Measures
mplot Graphical Model Stability and Variable
Selection Procedures
mplusParallel.automation
Parallel Processing Automation for 'Mplus'
mpm Multivariate Projection Methods
mpmaggregate Aggregate Matrix Population Models
mpmcorrelogram Multivariate Partial Mantel Correlogram
mpmi Mixed-Pair Mutual Information Estimators
mpmsim Simulation of Matrix Population Models with
Defined Life History Characteristics
mpoly Symbolic Computation and More with Multivariate
Polynomials
mpower Power Analysis via Monte Carlo Simulation for
Correlated Data
mppR Multi-Parent Population QTL Analysis
mpr Multi-Parameter Regression (MPR)
mpshock Monetary Policy Shock Series for Empirical
Macroeconomics
mpspline2 Mass-Preserving Spline Functions for Soil Data
mpt Multinomial Processing Tree Models
mpwR Standardized Comparison of Workflows in Mass
Spectrometry-Based Bottom-Up Proteomics
mqqcause Multivariate Quantile-on-Quantile Granger
Causality
mqqr Multivariate Quantile-on-Quantile Regression
mqriskR Actuarial Risk Modeling and Life Contingencies
mr.mashr Multiple Regression with Multivariate Adaptive
Shrinkage
mr.pivw Penalized Inverse-Variance Weighted Estimator
for Mendelian Randomization
mrIML Multi-Response (Multivariate) Interpretable
Machine Learning
mrMLM Multi-Locus Random-SNP-Effect Mixed Linear
Model Tools for GWAS
mrMLM.GUI Multi-Locus Random-SNP-Effect Mixed Linear
Model Tools for Genome-Wide Association Study
with Graphical User Interface
mrPStrata Multiply Robust Estimation in Causal Survival
Analysis with Treatment Noncompliance
mrangr Mechanistic Metacommunity Simulator
mrap Machine-Readable Data Analysis Results with
Function Wrappers
mratios Ratios of Coefficients in the General Linear
Model
mrbin Metabolomics Data Analysis Functions
mrbsizeR Scale Space Multiresolution Analysis of Random
Signals
mrct Outlier Detection of Functional Data Based on
the Minimum Regularized Covariance Trace
Estimator
mrddGlobal Global Testing for Multivariate Regression
Discontinuity Designs
mrds Mark-Recapture Distance Sampling
mreg Fits Regression Models When the Outcome is
Partially Missing
mregions2 Access Data from Marine Regions: Gazetteer &
Data Products
mrf Multiresolution Forecasting
mrf2d Markov Random Field Models for Image Analysis
mrfDepth Depth Measures in Multivariate, Regression and
Functional Settings
mrfse Markov Random Field Structure Estimator
mrgsim.parallel Simulate with 'mrgsolve' in Parallel
mrgsim.sa Sensitivity Analysis with 'mrgsolve'
mrgsolve Simulate from ODE-Based Models
mri Modified Rand and Wallace Indices
mritc MRI Tissue Classification
mro Multiple Correlation
mrregression Regression Analysis for Very Large Data Sets
via Merge and Reduce
mrtsSphere Multi-Resolution Thin-Plate Splines on the
Sphere
msPCA Sparse Principal Component Analysis with
Multiple Principal Components
msSPChelpR Helper Functions for Second Primary Cancer
Analyses
msaR Multiple Sequence Alignment for R Shiny
msae Multivariate Fay Herriot Models for Small Area
Estimation
msaeHB Multivariate Small Area Estimation using
Hierarchical Bayesian Method
msaenet Multi-Step Adaptive Estimation Methods for
Sparse Regressions
msamp Estimate Sample Size to Detect Bacterial
Contamination in a Product Lot
msce Hazard of Multi-Stage Clonal Expansion Models
mschart Chart Generation for 'Microsoft Word',
'Microsoft Excel' and 'Microsoft PowerPoint'
Documents
mscp Multiscale Change Point Detection via Gradual
Bandwidth Adjustment in Moving Sum Processes
mscstexta4r R Client for the Microsoft Cognitive Services
Text Analytics REST API
mscstts R Client for the Microsoft Cognitive Services
'Text-to-Speech' REST API
mscsweblm4r R Client for the Microsoft Cognitive Services
Web Language Model REST API
msd Method of Successive Dichotomizations
msda Multi-Class Sparse Discriminant Analysis
msde Bayesian Inference for Multivariate Stochastic
Differential Equations
msdrought Seasonal Mid-Summer Drought Characteristics
mseapca Metabolite Set Enrichment Analysis for Loadings
msentropy Spectral Entropy for Mass Spectrometry Data
msgps Degrees of Freedom of Elastic Net, Adaptive
Lasso and Generalized Elastic Net
msgr Extends Messages, Warnings and Errors by Adding
Levels and Log Files
msig An R Package for Exploring Molecular Signatures
Database
msigdbr MSigDB Gene Sets for Multiple Organisms in a
Tidy Data Format
msir Model-Based Sliced Inverse Regression
msm Multi-State Markov and Hidden Markov Models in
Continuous Time
msma Multiblock Sparse Multivariable Analysis
msme Functions and Datasets for "Methods of
Statistical Model Estimation"
msmtools Building Augmented Data to Run Multi-State
Models with 'msm' Package
msos Data Sets and Functions Used in Multivariate
Statistics: Old School by John Marden
mssearchr Library Search Against Electron Ionization Mass
Spectral Databases
mstATA Automated Test Assembly for Multistage Tests
Using Mixed-Integer Linear Programming
mstDIF A Collection of DIF Tests for Multistage Tests
mstate Data Preparation, Estimation and Prediction in
Multi-State Models
mstclustering "MST-Based Clustering"
mstherm Analyze MS/MS Protein Melting Data
mstknnclust MST-kNN Clustering Algorithm
mstudentd Multivariate t Distribution
msu Multivariate Symmetric Uncertainty and Other
Measurements
mt Metabolomics Data Analysis Toolbox
mt.surv Multi-Threshold Survival Analysis
mtaOpenData Convenient Access to MTA Open Data API
Endpoints
mtanan Single Valued Neutrosophic Kruskal-Wallis and
Mann Whitney Tests
mtarm Bayesian Estimation of Multivariate Threshold
Autoregressive Models
mtb My Toolbox for Assisting Document Editing and
Data Presenting
mtdesign Mander and Thompson Designs
mtgjsonsdk 'DuckDB'-Backed Query Client for 'MTGJSON' Card
Data
mthapower Sample Size and Power for Association Studies
Involving Mitochondrial DNA Haplogroups
mtlgmm Unsupervised Multi-Task and Transfer Learning
on Gaussian Mixture Models
mtrank Ranking using Probabilistic Models and
Treatment Choice Criteria
mtscr Multidimensional Top Scoring for Creativity
Research
mtsdi Multivariate Time Series Data Imputation
mtsta Accessing the Red List of Montane Tree Species
of the Tropical Andes
mtvc Multiple Counting Process Structure for
Survival Analysis
muRL Mailmerge using R, LaTeX, and the Web
muRty Murty's Algorithm for k-Best Assignments
muckrock Data on Freedom of Information Act Requests
mudfold Multiple UniDimensional unFOLDing
mueRelativeRisk Relative Risk Based on the Ratio of Median
Unbiased Estimates
muhaz Hazard Function Estimation in Survival Analysis
muiMaterial 'Material UI' for 'shiny' Apps and 'Quarto'
muiTreeView 'MUI X Tree View' for 'shiny' Apps and 'Quarto'
muir Exploring Data with Tree Data Structures
mulSEM Some Multivariate Analyses using Structural
Equation Modeling
mulgar Functions for Pre-Processing Data for
Multivariate Data Visualisation using Tours
mully Create, Modify and Visualize Multi-Layered
Networks
mulset Multiset Intersection Generator
mult.latent.reg Regression and Clustering in Multivariate
Response Scenarios
multChernoff Finite-Sample Tail Bound of Likelihood Ratio
Test under Multinomial Sampling
multDM Multivariate Version of the Diebold-Mariano
Test
multIntTestFunc Provides Test Functions for Multivariate
Integration
multbxxc Auxiliary Routines for Influx Software
multcomp Simultaneous Inference in General Parametric
Models
multcompView Visualizations of Paired Comparisons
multe Multiple Treatment Effects Regression
multfisher Optimal Exact Tests for Multiple Binary
Endpoints
multgee GEE Solver for Correlated Nominal or Ordinal
Multinomial Responses
multiActionButton Multi Action Button for 'Shiny' Applications
multiApply Apply Functions to Multiple Multidimensional
Arrays or Vectors
multiAssetOptions Finite Difference Method for Multi-Asset Option
Valuation
multiCA Multinomial Cochran-Armitage Trend Test
multiCCA Multiple Canonical Correlation Analysis (Kernel
and Functional)
multiColl Collinearity Detection in a Multiple Linear
Regression Model
multiDEGGs Multi-Omic Differentially Expressed Gene-Gene
Pairs
multiDimBio Multivariate Analysis and Visualization for
Biological Data
multiDoE Multi-Criteria Design of Experiments for
Optimal Design
multiFANOVA Multiple Contrast Tests for Functional Data
multiHiCcompare Normalize and detect differences between Hi-C
datasets when replicates of each experimental
condition are available
multiModTest Information Assessment for Individual
Modalities in Multimodal Regression Models
multiRL Reinforcement Learning Tools for Multi-Armed
Bandit
multiRec Analysis of Multi-Type Recurrent Events
multiSA Multi-Stock Assessment
multiScaleR Methods for Optimizing Scales of Effect
multiUS Functions for the Courses Multivariate Analysis
and Computer Intensive Methods
multibias Multiple Bias Analysis in Causal Inference
multibiasmeta Sensitivity Analysis for Multiple Biases in
Meta-Analyses
multibiplotGUI Multibiplot Analysis in R
multiblock Multiblock Data Fusion in Statistics and
Machine Learning
multibreakeR Tests for a Structural Change in Multivariate
Time Series
multibridge Evaluating Multinomial Order Restrictions with
Bridge Sampling
multicastR A Companion to the Multi-CAST Collection
multichull A Generic Convex-Hull-Based Model Selection
Method
multiclassPairs Build MultiClass Pair-Based Classifiers using
TSPs or RF
multicmp Flexible Modeling of Multivariate Count Data
via the Multivariate Conway-Maxwell-Poisson
Distribution
multicool Permutations of Multisets in Cool-Lex Order
multid Multivariate Difference Between Two Groups
multideploy Deploy File Changes Across Multiple 'GitHub'
Repositories
multidplyr A Multi-Process 'dplyr' Backend
multifamm Multivariate Functional Additive Mixed Models
multifear Multiverse Analyses for Conditioning Data
multifunc Analysis of Ecological Drivers on Ecosystem
Multifunctionality
multifwf Read Fixed Width Format Files Containing Lines
of Different Type
multigraph Plot and Manipulate Multigraphs
multigraphr Probability Models and Statistical Analysis of
Random Multigraphs
multigroup.vaccine Analyze Outbreak Models of Multi-Group
Populations with Vaccination
multilandr Landscape Analysis at Multiple Spatial Scales
multilaterals Transitive Index Numbers for Cross-Sections and
Panel Data
multilevLCA Estimates and Plots Single-Level and Multilevel
Latent Class Models
multilevel Multilevel Functions
multilevelPSA Multilevel Propensity Score Analysis
multilevelTools Multilevel and Mixed Effects Model Diagnostics
and Effect Sizes
multilevelcoda Estimate Bayesian Multilevel Models for
Compositional Data
multilevelmediation Utility Functions for Multilevel Mediation
Analysis
multilevelmod Model Wrappers for Multi-Level Models
multilinguer Gentle Language Installer for R User
multilink Multifile Record Linkage and Duplicate
Detection
multimark Capture-Mark-Recapture Analysis using Multiple
Non-Invasive Marks
multimedia Multimodal Mediation Analysis
multimediate Causal Mediation Analysis in Presence of
Multiple Mediators Uncausally Related
multimix Fit Mixture Models Using the Expectation
Maximisation (EM) Algorithm
multimode Mode Testing and Exploring
multimolang 'multimolang': Multimodal Language Analysis
multimorbidity Harmonizing Various Comorbidity,
Multimorbidity, and Frailty Measures
multiness MULTIplex NEtworks with Shared Structure
multinet Analysis and Mining of Multilayer Social
Networks
multinets Multilevel Networks Analysis
multinomialLogitMix Clustering Multinomial Count Data under the
Presence of Covariates
multinomineq Bayesian Inference for Multinomial Models with
Inequality Constraints
multiobjectiveMDP Solution Methods for Multi-Objective Markov
Decision Processes
multiocc Fits Multivariate Spatio-Temporal Occupancy
Model
multipanelfigure Infrastructure to Assemble Multi-Panel Figures
(from Grobs)
multipleDL Addressing Detection Limits by Cumulative
Probability Models (CPMs)
multipleITScontrol Interrupted Time Series with a Control and
Multiple Interventions
multipleNCC Weighted Cox-Regression for Nested Case-Control
Data
multipleOutcomes Joint Covariance and Treatment-Effect Tests for
Multiple Outcomes
multiplestressR Additive and Multiplicative Null Models for
Multiple Stressor Data
multiplex Algebraic Tools for the Analysis of Multiple
Social Networks
multipol Multivariate Polynomials
multirich Calculate Multivariate Richness via UTC and
sUTC
multiridge Fast Cross-Validation for Multi-Penalty Ridge
Regression
multiscape Multi-Objective Spatial Planning
multiselect Selecting Combinations of Predictors by
Leveraging Multiple AUCs for an Ordered
Multilevel Outcome
multisensi Multivariate Sensitivity Analysis
multisite.accuracy Estimation of Accuracy in Multisite
Machine-Learning Models
multisom Clustering a Data Set using Multi-SOM Algorithm
multispatialCCM Multispatial Convergent Cross Mapping
multiswc Multi-Regime Marginal Structural Cox Model for
Multi-Way Treatment Switching in Oncology
Clinical Trials with Survival Endpoints
multitaper Spectral Analysis Tools using the Multitaper
Method
multitool Run Multiverse Style Analyses
multivar Penalized Estimation of Multiple-Subject Vector
Autoregressive Models
multivariance Measuring Multivariate Dependence Using
Distance Multivariance
multivarious Extensible Data Structures for Multivariate
Analysis
multivator A Multivariate Emulator
multiverse Create 'multiverse analysis' in R
multiview Cooperative Learning for Multi-View Analysis
multiwave Estimation of Multivariate Long-Memory Models
Parameters
multiway Component Models for Multi-Way Data
multiwayvcov Multi-Way Standard Error Clustering
multpois Analyze Nominal Response Data with the
Multinomial-Poisson Trick
multtest Resampling-based multiple hypothesis testing
multvardiv Multivariate Generalized Gaussian Distribution,
Multivariate t Distribution, Multivariate
Cauchy Distribution, Statistical Divergence
multxpert Common Multiple Testing Procedures and
Gatekeeping Procedures
mumarinex Computation of the Multivariate Marine Recovery
Index
mums2 Microbial Ecology by Tandem Mass Spectrometry
munch Rich Inline Text for 'grid' Graphics and
'flextable'
munfold Metric Unfolding
munsell Utilities for Using Munsell Colours
munsellinterpol Interpolate Munsell Renotation Data from Hue
Value/Chroma to CIE/RGB
mupet Multiclass Performance Evaluation Toolkit
murphydiagram Murphy Diagrams for Forecast Comparisons
muscle Multiple Sequence Alignment with MUSCLE
musclesyneRgies Extract Muscle Synergies from Electromyography
music Learn and Experiment with Music Theory
musicMCT Analyze the Structure of Musical Scales
musicNMR Conversion of Nuclear Magnetic Resonance
Spectra in Audio Files
musicXML Data Sonification using 'musicXML'
mutSignatures Decipher Mutational Signatures from Somatic
Mutational Catalogs
mutationtypes Validate and Convert Mutational Impacts Using
Standard Genomic Dictionaries
mutoss Unified Multiple Testing Procedures
mutossGUI A Graphical User Interface for the MuToss
Project
muttest Mutation Testing
mutualinf Computation and Decomposition of the Mutual
Information Index
mvBayes Multivariate Bayesian Regression
mvDFA Multivariate Detrended Fluctuation Analysis
mvGPS Causal Inference using Multivariate Generalized
Propensity Score
mvLSW Multivariate, Locally Stationary Wavelet
Process Estimation
mvLSWimpute Imputation Methods for Multivariate Locally
Stationary Time Series
mvMAPIT Multivariate Genome Wide Marginal Epistasis
Test
mvMISE A General Framework of Multivariate
Mixed-Effects Selection Models
mvMORPH Multivariate Comparative Tools for Fitting
Evolutionary Models to Morphometric Data
mvMonitoring Multi-State Adaptive Dynamic Principal
Component Analysis for Multivariate Process
Monitoring
mvPot Multivariate Peaks-over-Threshold Modelling for
Spatial Extreme Events
mvProbit Multivariate Probit Models
mvQuad Methods for Multivariate Quadrature
mvSLOUCH Multivariate Stochastic Linear
Ornstein-Uhlenbeck Models for Phylogenetic
Comparative Hypotheses
mvSUSY Multivariate Surrogate Synchrony
mvShapiroTest Generalized Shapiro-Wilk test for multivariate
normality
mvabund Statistical Methods for Analysing Multivariate
Abundance Data
mvalpha Krippendorff's Alpha for Multi-Valued Data
mvardlurt Multivariate ARDL Unit Root Test
mvbutils General utilities, workspace organization, code
and doc editing, live package maintenance, etc
mvcauchy Multivariate Cauchy Distribution
mvcor Correlation Coefficients for Multivariate Data
mvctm Multivariate Variance Components Tests for
Multilevel Data
mvdalab Multivariate Data Analysis Laboratory
mverse Tidy Multiverse Analysis Made Simple
mvfmr Functional Multivariable Mendelian
Randomization
mvgam Multivariate (Dynamic) Generalized Additive
Models
mvgb Multivariate Probabilities of Scale Mixtures of
Multivariate Normal Distributions via the Genz
and Bretz (2002) QRSVN Method
mvglmmRank Multivariate Generalized Linear Mixed Models
for Ranking Sports Teams
mvhist Multivariate Histograms
mvhtests Multivariate Hypothesis Tests
mvinfluence Influence Measures and Diagnostic Plots for
Multivariate Linear Models
mvmesh Multivariate Meshes and Histograms in Arbitrary
Dimensions
mvmeta Multivariate and Univariate Meta-Analysis and
Meta-Regression
mvnTest Goodness of Fit Tests for Multivariate
Normality
mvna Nelson-Aalen Estimator of the Cumulative Hazard
in Multistate Models
mvnfast Fast Multivariate Normal and Student's t
Methods
mvngGrAd Moving Grid Adjustment in Plant Breeding Field
Trials
mvnimpute Simultaneously Impute the Missing and Censored
Values
mvnma Multivariate Network Meta-Analysis using
Bayesian Methods
mvnmle ML Estimation for Multivariate Normal Data with
Missing Values
mvnormalTest Powerful Tests for Multivariate Normality
mvnormtest Normality Test for Multivariate Variables
mvnpermute Generate New Multivariate Normal Samples from
Permutations
mvord Multivariate Ordinal Regression Models
mvout Robust Multivariate Outlier Detection
mvoutlier Multivariate Outlier Detection Based on Robust
Methods
mvp Fast Symbolic Multivariate Polynomials
mvpd Multivariate Product Distributions for
Elliptically Contoured Distributions
mvrsquared Compute the Coefficient of Determination for
Vector or Matrix Outcomes
mvs Methods for High-Dimensional Multi-View
Learning
mvst Bayesian Inference for the Multivariate Skew-t
Model
mvtmeta Multivariate Meta-Analysis
mvtnorm Multivariate Normal and t Distributions
mvtsplot Multivariate Time Series Plot
mvtweedie Estimate Diet Proportions Using Multivariate
Tweedie Model
mvvg Matrix-Variate Variance-Gamma Distribution
mwTensor Multi-Way Component Analysis
mwa Causal Inference in Spatiotemporal Event Data
mwcsr Solvers for Maximum Weight Connected Subgraph
Problem and Its Variants
mwlaxeref Cross-References Lake Identifiers Between
Different Data Sets
mwmap Create Maps of Malawi Administrative Boundaries
mwmapdata Spatial Boundary Data for Malawi Administrative
Levels
mwshiny 'Shiny' for Multiple Windows
mx.api Minimal Matrix Client-Server API
mx.crypto Matrix End-to-End Encryption Primitives
mxcc Maxwell Control Charts
mxfda A Functional Data Analysis Package for Spatial
Single Cell Data
mxkssd Efficient Mixed-Level k-Circulant
Supersaturated Designs
mxmmod Measurement Model of Derivatives in 'OpenMx'
mxnorm Apply Normalization Methods to Multiplexed
Images
mxsem Specify 'OpenMx' Models with a 'lavaan'-Style
Syntax
myCRAN Graph of Daily and Cumulative Downloads of your
Packages
myClim Microclimatic Data Processing
myIO Interactive Data Visualizations Using 'd3.js'
myTAI Evolutionary Transcriptomics
mycaas My Computerized Adaptive Assessment
mycobacrvR Integrative Immunoinformatics for Mycobacterial
Diseases in R Platform
mycolorsTB Color Palettes for Mycobacterium Tuberculosis
Data Visualization
mycor Automatic Correlation and Regression Test in a
'data.frame'
myownrobs AI Coding Agent for 'RStudio'
myrror Compare Two Data Frames and Summarize
Differences
mzID An mzIdentML parser for R
mzR parser for netCDF, mzXML and mzML and mzIdentML
files (mass spectrometry data)
mzipmed Mediation using MZIP Model
n1qn1 Port of the 'Scilab' 'n1qn1' Module for
Unconstrained BFGS Optimization
nFactors Parallel Analysis and Other Non Graphical
Solutions to the Cattell Scree Test
nLTT Calculate the NLTT Statistic
nRegression Simulation-Based Calculations of Sample Size
for Linear and Logistic Regression
nTARP Cluster Analysis Using Thresholding After
Random Projections (n-TARP)
nVennR2 An Interface to 'nVenn2'
naaccr Read Cancer Records in the NAACCR Format
nabla Exact Derivatives via Automatic Differentiation
nabor Wraps 'libnabo', a Fast K Nearest Neighbour
Library for Low Dimensions
nadaverse Browse Microdata Catalogs Using 'NADA' REST API
nadir Super Learning with Flexible Formulas
nadiv (Non)Additive Genetic Relatedness Matrices
naflex Flexible Options for Handling Missing Values
naijR Operations to Ease Data Analyses Specific to
Nigeria
naive Empirical Extrapolation of Time Feature
Patterns
naivebayes High Performance Implementation of the Naive
Bayes Algorithm
naivereg Nonparametric Additive Instrumental Variable
Estimator and Related IV Methods
nakagami Functions for the Nakagami Distribution
name Tools for Working with Names
namedropR Create Visual Citations for Presentations and
Posters
namer Names Your 'R Markdown' Chunks
nametagger Named Entity Recognition in Texts using
'NameTag'
nandb Number and Brightness Image Analysis
naniar Data Structures, Summaries, and Visualisations
for Missing Data
nanoarrow Interface to the 'nanoarrow' 'C' Library
nanonext Lightweight Toolkit for Messaging, Concurrency
and the Web
nanoparquet Read and Write 'Parquet' Files
nanostringr Performs Quality Control, Data Normalization,
and Batch Effect Correction for 'NanoString
nCounter' Data
nanotime Nanosecond-Resolution Time Support for R
naptanr Call the 'NaPTAN' API Through R
naptime A Flexible and Robust Sys.sleep() Replacement
nara Native Raster Image Tools
nardl Nonlinear Cointegrating Autoregressive
Distributed Lag Model
narfima Neural AutoRegressive Fractionally Integrated
Moving Average Model
narray Subset- And Name-Aware Array Utility Functions
naryn Native Access Medical Record Retriever for High
Yield Analytics
nasa Access National Aeronautics and Space
Administration (NASA) APIs
nasadata Interface to Various NASA API's
nasapower NASA POWER API Client
nasaweather Collection of Datasets from the ASA 2006 Data
Expo
nascaR.data NASCAR Race Data
naspaclust Nature-Inspired Spatial Clustering
nat NeuroAnatomy Toolbox for Analysis of 3D Image
Data
nat.nblast NeuroAnatomy Toolbox ('nat') Extension for
Assessing Neuron Similarity and Clustering
nat.templatebrains NeuroAnatomy Toolbox ('nat') Extension for
Handling Template Brains
nat.utils File System Utility Functions for 'NeuroAnatomy
Toolbox'
natcpp Fast C++ Primitives for the 'NeuroAnatomy
Toolbox'
nativeORT Native R 'ONNX' Runtime
natmanager Install the 'Natverse' Packages from Scratch
natserv 'NatureServe' Interface
natstrat Obtain Unweighted Natural Strata that Balance
Many Covariates
natural Estimating the Error Variance in a
High-Dimensional Linear Model
naturalsort Natural Ordering
navigatr Navigation Menu for Pipe-Friendly Data
Processing
nawtilus Navigated Weighting for the Inverse Probability
Weighting
nbTransmission Naive Bayes Transmission Analysis
nbapalettes An NBA Jersey Palette Generator
nbc4va Bayes Classifier for Verbal Autopsy Data
nbconv Evaluate Arbitrary Negative Binomial
Convolutions
nbconvertR Vignette Engine Wrapping Jupyter Notebooks
nberwp NBER Working Papers
nblR Data Extraction of Australian NBL Basketball
Statistics
nbody Gravitational N-Body Simulation
nbpInference Inference on Average Treatment Effects for
Continuous Treatments
nbpMatching Functions for Optimal Non-Bipartite Matching
nc Named Capture to Data Tables
ncaavolleyballr Extract Data from NCAA Women's and Men's
Volleyball Website
ncappc NCA Calculations and Population Model Diagnosis
ncbit Retrieve and Build NBCI Taxonomic Data
ncdf4 Interface to Unidata netCDF (Version 4 or
Earlier) Format Data Files
ncdfCF Easy Access to NetCDF Files with CF Metadata
Conventions
ncdfgeom 'NetCDF' Geometry and Time Series
ncf Spatial Covariance Functions
ncmR Fit Neutral Community Model to Microbiome or
Ecological Data
ncmeta Straightforward 'NetCDF' Metadata
ncodeR Techniques for Automated Classifiers
ncvreg Regularization Paths for SCAD and MCP Penalized
Regression Models
nda Generalized Network-Based Dimensionality
Reduction and Analysis
ndi Neighborhood Deprivation Indices
ndjson Wicked-Fast Streaming 'JSON' ('ndjson') Reader
ndl Naive Discriminative Learning
ndtv Network Dynamic Temporal Visualizations
nearfar Near-Far Matching
neat Efficient Network Enrichment Analysis Test
neatR Neat Data for Presentation
neatRanges Tidy Up Date/Time Ranges
neatmaps Heatmaps for Multiple Network Data
nebula Negative Binomial Mixed Models Using
Large-Sample Approximation for Differential
Expression Analysis of ScRNA-Seq Data
necountries Countries of the World
needs Attaches and Installs Packages
negenes Estimating the Number of Essential Genes in a
Genome
negligible A Collection of Functions for Negligible
Effect/Equivalence Testing
neighbours Neighbourhood Functions for Local-Search
Algorithms
neldermead R Port of the 'Scilab' Neldermead Module
nemBM Using Network Evolution Models to Generate
Networks with Selected Blockmodel Type
nemsqar National Emergency Medical Service Quality
Alliance Measure Calculations
nemtr Nonparametric Extended Median Test - Cumulative
Summation Method
neo2R Neo4j to R
neo4jshell Querying and Managing 'Neo4J' Databases in 'R'
neo4r A 'Neo4J' Driver
neodistr Neo-Normal Distribution
neojags Neo-Normal Distributions Family for Markov
Chain Monte Carlo (MCMC) Models in 'JAGS'
neonOS Basic Data Wrangling for NEON Observational
Data
neonPlantEcology Process NEON Plant Data for Ecological Analysis
neonSoilFlux Compute Soil Carbon Fluxes for the National
Ecological Observatory Network Sites
neonUtilities Utilities for Working with NEON Data
neonstore NEON Data Store
neotoma2 Working with the Neotoma Paleoecology Database
nephro Utilities for Nephrology
neptune MLOps Metadata Store - Experiment Tracking and
Model Registry for Production Teams
nestable Collapsible 'HTML' Tables from Hierarchical
Data
nestcolor Colors for NEST Graphs
nestedLogit Nested Dichotomy Logistic Regression Models
nestedpp Performance Profiles and Nested Performance
Profiles
nestfs Cross-Validated (Nested) Forward Selection
nestr Build Nesting or Hierarchical Structures
net4pg Handle Ambiguity of Protein Identifications
from Shotgun Proteomics
netClust Model-Based Clustering of Network Data
netCoin Interactive Analytic Networks
netSEM Network Structural Equation Modeling
netUtils A Collection of Tools for Network Analysis
netassoc Inference of Species Associations from
Co-Occurrence Data
netcom NETwork COMparison Inference
netcutter Identification and Analysis of Co-Occurrence
Networks
netdiffuseR Analysis of Diffusion and Contagion Processes
on Networks
netdose Dose-Response Network Meta-Analysis in a
Frequentist Way
netgsa Network-Based Gene Set Analysis
netgwas Network-Based Genome Wide Association Studies
netie Antigen T Cell Interaction Estimation
netknitr Knit Network Map for any Dataset
netmap Represent Network Objects on a Map
netmediate Micro-Macro Analysis for Social Networks
netmem Social Network Measures using Matrices
netmeta Network Meta-Analysis using Frequentist Methods
netmhc2pan Interface to 'NetMHCIIpan'
netplot Beautiful Graph Drawing
netrankr Analyzing Partial Rankings in Networks
netrics Many Ways to Measure and Classify Membership
for Networks, Nodes, and Ties
netropy Statistical Entropy Analysis of Network Data
netseer Graph Prediction from a Graph Time Series
netseg Measures of Network Segregation and Homophily
netstat Retrieve Network Statistics Including Available
TCP Ports
netsubsamp Multivariate Inference of Network Moments by
Subsampling
nett Network Analysis and Community Detection
nettskjemar Connect to the 'nettskjema.no' API of the
University of Oslo
network Classes for Relational Data
networkABC Network Reverse Engineering with Approximate
Bayesian Computation
networkD3 D3 JavaScript Network Graphs from R
networkDynamic Dynamic Extensions for Network Objects
networkDynamicData Dynamic (Longitudinal) Network Datasets
networkLite An Simplified Implementation of the 'network'
Package Functionality
networkR Network Analysis and Visualization
networksem Network Structural Equation Modeling
networktools Tools for Identifying Important Nodes in
Networks
networktree Recursive Partitioning of Network Models
neuRosim Simulate fMRI Data
neuralGAM Interpretable Neural Network Based on
Generalized Additive Models
neuralnet Training of Neural Networks
neuroSCC Bridging Simultaneous Confidence Corridors and
PET Neuroimaging
neuroUp Plan Sample Size for Task fMRI Research using
Bayesian Updating
neurobase 'Neuroconductor' Base Package with Helper
Functions for 'nifti' Objects
neuroblastoma Neuroblastoma Copy Number Profiles
neurohcp Human 'Connectome' Project Interface
neuroim Data Structures and Handling for Neuroimaging
Data
neuroim2 Data Structures for Brain Imaging Data
neuroimaGene Transcriptomic Atlas of Neuroimaging Derived
Phenotypes
neuromapr Spatial Null Models and Transforms for Brain
Map Comparison
neuromplex Neural Multiplexing Analysis
neutralitytestr Test for a Neutral Evolutionary Model in Cancer
Sequencing Data
neutroSurvey Neutrosophic Survey Data Analysis
neutrostat Neutrosophic Statistics
nev Draw Nested Extreme Value Random Variables
nevada Network-Valued Data Analysis
neverhpfilter An Alternative to the Hodrick-Prescott Filter
new.dist Alternative Continuous and Discrete
Distributions
newFocus True Discovery Guarantee by Combining Partial
Closed Testings
newIMVC A Robust Integrated Mean Variance Correlation
newTestSurvRec Statistical Tests to Compare Curves with
Recurrent Events
newmark Uncertainty Analysis in Dynamic Site and Slope
Response
newsanchor Client for the News API
newscatcheR Programmatically Collect Normalized News from
(Almost) Any Website
newsmap Semi-Supervised Model for Geographical Document
Classification
newsmd Creation of NEWS.md File
nextGenShinyApps Craft Exceptional 'R Shiny' Applications and
Dashboards with Novel Responsive Tools
nexus Sourcing Archaeological Materials by Chemical
Composition
nfer Event Stream Abstraction using Interval Logic
nfl4th Functions to Calculate Optimal Fourth Down
Decisions in the National Football League
nflfastR Functions to Efficiently Access NFL Play by
Play Data
nflplotR NFL Logo Plots in 'ggplot2' and 'gt'
nflreadr Download 'nflverse' Data
nflseedR Functions to Efficiently Simulate and Evaluate
NFL Seasons
nflverse Easily Install and Load the 'nflverse'
nftbart Nonparametric Failure Time Bayesian Additive
Regression Trees
ngboostForecast Probabilistic Time Series Forecasting
ngme2 Linear Latent Non-Gaussian Models with Flexible
Distributions
ngram Fast n-Gram 'Tokenization'
ngramr Retrieve and Plot Google n-Gram Data
ngramrr A Simple General Purpose N-Gram Tokenizer
ngspatial Fitting the Centered Autologistic and Sparse
Spatial Generalized Linear Mixed Models for
Areal Data
nhanesA NHANES Data Retrieval
nhanesdata Harmonized Access to NHANES Survey Data
nhanesdiva NHANES Data Search, Preview, and Download Tools
nhdR Tools for Working with the National Hydrography
Dataset
nhdplusTools NHDPlus Tools
nhlscraper Scraper for National Hockey League Data
nhm Non-Homogeneous Markov and Hidden Markov
Multistate Models
nhppp Simulating Nonhomogeneous Poisson Point
Processes
nhs.predict Breast Cancer Survival and Therapy Benefits
nhsnumber Tools for Working with NHS Number Checksums
nhstplot Plot Null Hypothesis Significance Tests
niaidMI Markov Model Multiple Imputation for NIAID OS
niarules Numerical Association Rule Mining using
Population-Based Nature-Inspired Algorithms
nic Nature Inspired Colours
nice Get or Set UNIX Niceness
nicheR Ellipsoid-Based Virtual Niches and
Visualization
nicheROVER Niche Region and Niche Overlap Metrics for
Multidimensional Ecological Niches
nichetools Complementary Package to 'nicheROVER' and
'SIBER'
nichevol Tools for Ecological Niche Evolution Assessment
Considering Uncertainty
nieve Miscellaneous Utilities for Extreme Value
Analysis
nifti.io Read and Write NIfTI Files
nifti.pbcor Parcel-Based Correlation Between NIfTI Images
nilde Nonnegative Integer Solutions of Linear
Diophantine Equations with Applications
nilsier Design-Based Estimators for NILS
nima Nima Hejazi's R Toolbox
nimble MCMC, Particle Filtering, and Programmable
Hierarchical Modeling
nimbleAPT Adaptive Parallel Tempering for 'NIMBLE'
nimbleCarbon Bayesian Analyses of Radiocarbon Dates with
NIMBLE
nimbleEcology Distributions for Ecological Models in 'nimble'
nimbleHMC Hamiltonian Monte Carlo and Other
Gradient-Based MCMC Sampling Algorithms for
'nimble'
nimbleMacros Macros Generating 'nimble' Code
nimbleNoBounds Transformed Distributions for Improved MCMC
Efficiency
nimbleQuad Laplace Approximation, Quadrature, and Nested
Deterministic Approximation Methods for
'nimble'
nimbleSCR Spatial Capture-Recapture (SCR) Methods Using
'nimble'
nimbleSMC Sequential Monte Carlo Methods for 'nimble'
nimblewomble Bayesian Wombling using 'nimble'
nipals Principal Components Analysis using NIPALS or
Weighted EMPCA, with Gram-Schmidt
Orthogonalization
nipnTK National Information Platforms for Nutrition
Anthropometric Data Toolkit
nivm Noninferiority Tests with Variable Margins
nivo.bubblechart Interactive Bubble Charts for 'Shiny' Using
'Nivo'
nixmass Snow Water Equivalent Modeling with the
'Delta.snow' and 'HS2SWE' Models and Empirical
Regression Models
nixtlar A Software Development Kit for 'Nixtla''s
'TimeGPT'
nlMS Non-Linear Model Selection
nlWaldTest Wald Test of Nonlinear Restrictions and
Nonlinear CI
nlcv Nested Loop Cross Validation
nleqslv Solve Systems of Nonlinear Equations
nlfh Nonlinear Fay-Herriot Models for Small Area
Estimation
nlgeocoder Geocoding for the Netherlands
nlgm Non Linear Growth Models
nlist Lists of Numeric Atomic Objects
nlive Automated Estimation of Sigmoidal and Piecewise
Linear Mixed Models
nlmeU Functions and Data Supporting 'Linear
Mixed-Effects Models: A Step-by-Step Approach'
nlmeVPC Visual Model Checking for Nonlinear Mixed
Effect Model
nlmixr2 Nonlinear Mixed Effects Models in Population
PK/PD
nlmixr2auto Automated Population Pharmacokinetic Modeling
nlmixr2autoinit Automatic Generation of Initial Estimates for
Population Pharmacokinetic Modeling
nlmixr2data Nonlinear Mixed Effects Models in Population
PK/PD, Data
nlmixr2est Nonlinear Mixed Effects Models in Population
PK/PD, Estimation Routines
nlmixr2extra Nonlinear Mixed Effects Models in Population
PK/PD, Extra Support Functions
nlmixr2lib A Model Library for 'nlmixr2'
nlmixr2plot Nonlinear Mixed Effects Models in Population
PK/PD, Plot Functions
nlmixr2rpt Templated Word and PowerPoint Reporting of
'nlmixr2' Fitting Results
nlmixr2save Save 'nlmixr2' Fits in a Format Readable
Outside 'nlmixr2'
nlmixr2targets Targets for 'nlmixr2' Pipelines
nlmm Generalized Laplace Mixed-Effects Models
nlmrt Functions for Nonlinear Least Squares Solutions
nlnet Nonlinear Network, Clustering, and Variable
Selection Based on DCOL
nlopt Call Optimization Solvers with .nl Files
nloptr R Interface to NLopt
nlpembeds Natural Language Processing Embeddings
nlpsem Nonlinear Longitudinal Process in Structural
Equation Modeling
nlraa Nonlinear Regression for Agricultural
Applications
nlreg Higher Order Inference for Nonlinear
Heteroscedastic Models
nlrr Non-Linear Relative Risk Estimation and
Plotting
nlrx Setup, Run and Analyze 'NetLogo' Model
Simulations from 'R' via 'XML'
nls.multstart Robust Non-Linear Regression using AIC Scores
nls2 Non-Linear Regression with Brute Force
nlsMicrobio Nonlinear Regression in Predictive Microbiology
nlsem Fitting Structural Equation Mixture Models
nlshrink Non-Linear Shrinkage Estimation of Population
Eigenvalues and Covariance Matrices
nlsic Non Linear Least Squares with Inequality
Constraints
nlsmsn Fitting Nonlinear Models with Scale Mixture of
Skew-Normal Distributions
nlsr Functions for Nonlinear Least Squares Solutions
- Updated 2022
nlstac An R Package for Fitting Separable Nonlinear
Models
nlstools Tools for Nonlinear Regression Analysis
nlt A Nondecimated Lifting Transform for Signal
Denoising
nltm Non-Linear Transformation Models
nlts Nonlinear Time Series Analysis
nmaINLA Network Meta-Analysis using Integrated Nested
Laplace Approximations
nmaplateplot The Plate Plot for Network Meta-Analysis
Results
nmarank Complex Hierarchy Questions in Network
Meta-Analysis
nmathresh Thresholds and Invariant Intervals for Network
Meta-Analysis
nmfbin Non-Negative Matrix Factorization for Binary
Data
nmfkc Non-Negative Matrix Factorization with Kernel
Covariates
nmixgof Goodness of Fit Checks for Binomial N-Mixture
Models
nmrrr Binning and Visualizing NMR Spectra in
Environmental Samples
nmslibR Non Metric Space (Approximate) Library
nmw Understanding Nonlinear Mixed Effects Modeling
for Population Pharmacokinetics
nn2poly Neural Network Weights Transformation into
Polynomial Coefficients
nnGarrote Non-Negative Garrote Estimation with Penalized
Initial Estimators
nnR Neural Networks Made Algebraic
nnTensor Non-Negative Tensor Decomposition
nna Nearest-Neighbor Analysis
nncc Nearest Neighbors Matching of Case-Control Data
nndiagram Generator of 'LaTeX' Code for Drawing Neural
Network Diagrams with 'TikZ'
nnetLM Neural Network with Levenberg-Marquardt
Optimization
nnfor Time Series Forecasting with Neural Networks
nngeo k-Nearest Neighbor Join for Spatial Data
nnlasso Non-Negative Lasso and Elastic Net Penalized
Generalized Linear Models
nnlib2Rcpp A Tool for Creating Custom Neural Networks in
C++ and using Them in R
nnls The Lawson-Hanson Algorithm for Non-Negative
Least Squares (NNLS)
nnmf Nonnegative Matrix Factorization
nnsolve Fast Non-Negative Least Squares
nnspat Nearest Neighbor Methods for Spatial Patterns
nnt The Number Needed to Treat (NNT) for Survival
Endpoint
nntmvn Draw Samples of Truncated Multivariate Normal
Distributions
noaa Accessing NOAA Climate Data Online
noah Create Unique Pseudonymous Animal Names
noctua Connect to 'AWS Athena' using R 'AWS SDK'
'paws' ('DBI' Interface)
nodbi 'NoSQL' Database Connector
node2vec Algorithmic Framework for Representational
Learning on Graphs
nodeSub Simulate DNA Alignments Using Node
Substitutions
nofrills Low-Cost Anonymous Functions
noia Implementation of the Natural and Orthogonal
InterAction (NOIA) Model
noise Estimation of Intrinsic and Extrinsic Noise
from Single-Cell Data
noisemodel Noise Models for Classification Datasets
noisyCE2 Cross-Entropy Optimisation of Noisy Functions
noisySBM Noisy Stochastic Block Mode: Graph Inference by
Multiple Testing
noisyr Noise Quantification in High Throughput
Sequencing Output
nolock Append 'WITH (NOLOCK)' to 'SQL' Queries, Get
Packages in Active Script
nomads Nomadic Pectoral Sandpiper Movement Data
nombre Number Names
nomclust Hierarchical Cluster Analysis of Nominal Data
nomiShape Visualization and Analysis of Nominal Variable
Distributions
nominatimlite Interface to the 'Nominatim' API
nomine Classify Names by Gender, U.S. Ethnicity, and
Leaf Nationality
nomisdata Access 'Nomis' UK Labour Market Data and
Statistics
nomnoml Sassy 'UML' Diagrams
nomogramEx Extract Equations from a Nomogram
nomogramFormula Calculate Total Points and Probabilities for
Nomogram
nonLinearDotPlot Non Linear Dot Plots
nonParQuantileCausality
Nonparametric Causality in Quantiles Test
noncompliance Causal Inference in the Presence of Treatment
Noncompliance Under the Binary Instrumental
Variable Model
noncomplyR Bayesian Analysis of Randomized Experiments
with Non-Compliance
nonlinearTseries Nonlinear Time Series Analysis
nonmem2R Loading NONMEM Output Files with Functions for
Visual Predictive Checks (VPC) and Goodness of
Fit (GOF) Plots
nonmem2rx Converts 'NONMEM' Models to 'rxode2'
nonmemica Create and Evaluate NONMEM Models in a Project
Context
nonneg.cg Non-Negative Conjugate-Gradient Minimizer
nonnest2 Tests of Non-Nested Models
nonpar A Collection of Nonparametric Hypothesis Tests
nonparTrendR A Nonparametric Trend Test for Independent and
Dependent Samples
nonparaeff Nonparametric Methods for Measuring Efficiency
and Productivity
nonparametric.bayes Project Code - Nonparametric Bayes
nonprobsvy Inference Based on Non-Probability Samples
nonsmooth Nonparametric Methods for Smoothing Nonsmooth
Data
nonstat Detecting Nonstationarity in Time Series
nopaco Non-Parametric Concordance Coefficient
nor1mix Normal aka Gaussian 1-d Mixture Models
norMmix Direct MLE for Multivariate Normal Mixture
Distributions
norSTR Allele Frequencies for 50 Forensic STR Markers
nord Arctic Ice Studio's Nord and Group of Seven
Inspired Colour Palettes for 'ggplot2'
nordklimdata1 Dataset for Climate Analysis with Data from the
Nordic Region
nordstatExtras Shared 'SQLite' Cache Backend for the
'nordstat' Package Family
norm Analysis of Multivariate Normal Datasets with
Missing Values
normaliseR Re-Scale Vectors and Time-Series Features
normality Tests for Departure from Normality
normalize Centering and Scaling of Numeric Data
normalizeH Normalize Hadamard Matrix
normalp Routines for Exponential Power Distribution
normfluodbf Cleans and Normalizes FLUOstar DBF and DAT
Files from 'Liposome' Flux Assays
normref Continuous Norming
nortest Tests for Normality
nortestARMA Neyman Smooth Tests of Normality for the Errors
of ARMA Models
nortsTest Assessing Normality of Stationary Process
nos Compute Node Overlap and Segregation in
Ecological Networks
nose Classification of Sparseness in 2-by-2
Categorical Data
nosoi A Forward Agent-Based Transmission Chain
Simulator
not Narrowest-Over-Threshold Change-Point Detection
notebookutils Dummy R APIs Used in 'Azure Synapse Analytics'
for Local Developments
notifyme Send Alerts to your Cellphone and Phillips Hue
Lights
notionR R Wrapper for 'Notion' API
notionapi Client for the 'Notion API'
novelforestSG Dataset from the Novel Forests of Singapore
novelqualcodes Visualise the Path to a Stopping Point in
Qualitative Interviews Based on Novel Codes
nowcast Economic Nowcasting with Bridge Equations and
Real-Time Evaluation
nowcastr Nowcasting with Chain-Ladder Method
noweb The 'noweb' System for R
np Nonparametric Kernel Smoothing Methods for
Mixed Data Types
npANCOVA Nonparametric ANCOVA Methods
npDoseResponse Nonparametric Estimation and Inference on
Dose-Response Curves
npExact Exact Nonparametric Hypothesis Tests for the
Mean, Variance and Stochastic Inequality
npROCRegression Kernel-Based Nonparametric ROC Regression
Modelling
npRmpi Parallel Nonparametric Kernel Smoothing Methods
for Mixed Data Types Using 'MPI'
nparACT Non-Parametric Measures of Actigraphy Data
nparLD Nonparametric Analysis of Longitudinal Data in
Factorial Experiments
nparMD Nonparametric Analysis of Multivariate Data in
Factorial Designs
nparcomp Multiple Comparisons and Simultaneous
Confidence Intervals
nparsurv Nonparametric Tests for Main Effects, Simple
Effects and Interaction Effect in a Factorial
Design with Censored Data
npboottprm Nonparametric Bootstrap Test with Pooled
Resampling
npboottprmFBar Informative Nonparametric Bootstrap Test with
Pooled Resampling
npbr Nonparametric Boundary Regression
npclust Nonparametric Tests for Incomplete Clustered
Data
npcp Some Nonparametric CUSUM Tests for Change-Point
Detection in Possibly Multivariate Observations
npcs Neyman-Pearson Classification via
Cost-Sensitive Learning
npcure Nonparametric Estimation in Mixture Cure Models
npcurePK Mixture Cure Model Estimation with Cure Status
Partially Known
npde Normalised Prediction Distribution Errors for
Nonlinear Mixed-Effect Models
npdsim Simulate Demand and Attributes for New Products
npfseir Nested Particle Filter for Stochastic SEIR
Epidemic Models
nph Planning and Analysing Survival Studies under
Non-Proportional Hazards
nphPower Sample Size Calculation under Non-Proportional
Hazards
nphRCT Non-Proportional Hazards in Randomized
Controlled Trials
npi Access the U.S. National Provider Identifier
Registry API
npiv Nonparametric Instrumental Variables Estimation
and Inference
nplplot Plotting Linkage and Association Results
nplr N-Parameter Logistic Regression
nplyr A Grammar of Nested Data Manipulation
npmlda Nonparametric Models for Longitudinal Data
npmlreg Nonparametric Maximum Likelihood Estimation for
Random Effect Models
npmr Nuclear Penalized Multinomial Regression
npmv Nonparametric Comparison of Multivariate
Samples
npphen Vegetation Phenological Cycle and Anomaly
Detection using Remote Sensing Data
npreg Nonparametric Regression via Smoothing Splines
npregderiv Nonparametric Estimation of the Derivatives of
a Regression Function
npregfast Nonparametric Estimation of Regression Models
with Factor-by-Curve Interactions
nprobust Kernel Density and Local Polynomial Regression
Methods
nproc Neyman-Pearson (NP) Classification Algorithms
and NP Receiver Operating Characteristic
(NP-ROC) Curves
nprotreg Nonparametric Rotations for Sphere-Sphere
Regression
npsf Nonparametric and Stochastic Efficiency and
Productivity Analysis
npsm Nonparametric Statistical Methods
npsp Nonparametric Spatial Statistics
npsurv Nonparametric Survival Analysis
npsurvSS Sample Size and Power Calculation for Common
Non-Parametric Tests in Survival Analysis
nptest Nonparametric Bootstrap and Permutation Tests
npwbs Nonparametric Multiple Change Point Detection
Using Wild Binary Segmentation
nrba Methods for Conducting Nonresponse Bias
Analysis (NRBA)
nricens NRI for Risk Prediction Models with Time to
Event and Binary Response Data
nrlR Functions to Scrape Rugby Data
nsRFA Non-Supervised Regional Frequency Analysis
nsROC Non-Standard ROC Curve Analysis
nsarfima Methods for Fitting and Simulating
Non-Stationary ARFIMA Models
nscancor Non-Negative and Sparse CCA
nse Numerical Standard Errors Computation in R
nseq Count of Sequential Events
nsga2R Elitist Non-Dominated Sorting Genetic Algorithm
nsga3 An Implementation of Non-Dominated Sorting
Genetic Algorithm III for Feature Selection
nsm3data Datasets to Accompany Hollander, Wolfe, and
Chicken NSM3
nsp Inference for Multiple Change-Points in Linear
Models
nspmix Nonparametric and Semiparametric Mixture
Estimation
nsprcomp Non-Negative and Sparse PCA
nswgeo Geospatial Data and Maps for New South Wales,
Australia
nsyllable Count Syllables in Character Vectors
ntfy Lightweight Wrapper to the 'ntfy.sh' Service
ntranova Two Way Neutrosophic ANOVA
ntsDatasets Neutrosophic Data Sets
ntsDists Neutrosophic Distributions
nucim Nucleome Imaging Toolbox
nudibranch Colour Palettes Inspired by Sea Slugs and
Nudibranchs of Sydney
nuggets Extensible Framework for Data Pattern
Exploration
nullabor Tools for Graphical Inference
nullcat Null Models for Categorical and Continuous
Community Matrices
numDeriv Accurate Numerical Derivatives
numKM Create a Kaplan-Meier Plot with Numbers at Risk
numOSL Numeric Routines for Optically Stimulated
Luminescence Dating
numbat Haplotype-Aware CNV Analysis from scRNA-Seq
numberize Convert Words to Numbers in Multiple Languages
numberofalleles Compute the Probability Distribution of the
Number of Alleles in a DNA Mixture
numbers Number-Theoretic Functions
numform Tools to Format Numbers for Publication
numspellR Detection of Numeric Persistence and Rigidity
Patterns
nutriNetwork Structure Learning with Copula Graphical Model
nutrition Useful Functions for People on a Diet
nuts Convert European Regional Data
nvctr The n-vector Approach to Geographical Position
Calculations using an Ellipsoidal Model of
Earth
nvmix Multivariate Normal Variance Mixtures
nycflights13 Flights that Departed NYC in 2013
nycflights23 Flights and Other Useful Metadata for NYC
Outbound Flights in 2023
nzffdr Import, Clean and Update Data from the New
Zealand Freshwater Fish Database
nzilbb.labbcat Accessing Data Stored in 'LaBB-CAT' Instances
nzilbb.vowels Vowel Covariation Tools
nzpullover Driving Offences in New Zealand Between 2009
and 2016
o2geosocial Reconstruction of Transmission Chains from
Surveillance Data
o2ools Tools for 'outbreaker2'
o2plsda Multiomics Data Integration
oCELLoc Predicts Suitable Cell Types in Spatial
Transcriptomics and scRNA-seq Data
oHMMed HMMs with Ordered Hidden States and Emission
Densities
oRaklE Multi-Horizon Electricity Demand Forecasting in
High Resolution
oaColors OpenAnalytics Colors Package
oaPlots OpenAnalytics Plots Package
oai General Purpose 'Oai-PMH' Services Client
oaii 'OpenAI' API R Interface
oaqc Computation of the Orbit-Aware Quad Census
oaxaca Blinder-Oaxaca Decomposition
obAnalytics Limit Order Book Analytics
obcost Obesity Cost Database
obfuscatoR Obfuscation Game Designs
objectProperties A Factory of Self-Describing Properties
objectSignals Observer Pattern for S4
objectremover 'RStudio' Addin for Removing Objects from the
Global Environment Based on Patterns and Object
Type
oblicubes 3D Rendering Using Obliquely Projected Cubes
and Cuboids
obliqueRSF Oblique Random Forests for Right-Censored
Time-to-Event Data
obm Interface to 'OpenBioMaps' Data and Services
obr Access 'Office for Budget Responsibility' Data
obsSens Sensitivity Analysis for Observational Studies
observationalBlocks Block Designs for Observational Studies
oc Optimal Classification Roll Call Analysis
Software
occ Estimation of PET Neuroreceptor Occupancies
occumb Site Occupancy Modeling for Environmental DNA
Metabarcoding
occupancy Probability Functions for Occupancy
Distributions
occupationMeasurement Interactively Measure Occupations in Interviews
and Beyond
ocd High-Dimensional Multiscale Online Changepoint
Detection
oce Analysis of Oceanographic Data
oceCens Ordered Composite Endpoints with Censoring
oceanexplorer Explore Our Planet's Oceans with NOAA
oceanic Location Identify Tool
oceanmap A Plotting Toolbox for 2D Oceanographic Data
oceanwaves Ocean Wave Statistics
ocedata Oceanographic Data Sets for 'oce' Package
ocf Ordered Correlation Forest
ockc Order Constrained Solutions in k-Means
Clustering
oclust Gaussian Model-Based Clustering with Outliers
ocp Bayesian Online Changepoint Detection
ocrRBBR Explain Gene Expression with Boolean Rules of
Chromatin States
ocs4R Interface to Open Collaboration Services (OCS)
REST API
octopucs Statistical Support for Hierarchical Clusters
octopus A Database Management Tool
octopusR Interact with the 'Octopus Energy' API
od Manipulate and Map Origin-Destination Data
oda Pure-R Core Engine for Optimal Data Analysis
(ODA / MultiODA)
odbc Connect to ODBC Compatible Databases (using the
DBI Interface)
odbc.resourcer Open Database Connectivity Resource Resolver
odbr Download Data from Brazil's Origin Destination
Surveys
oddnet Anomaly Detection in Temporal Networks
odds.converter Betting Odds Conversion
odds.n.ends Odds Ratios, Contingency Table, and Model
Significance from a Generalized Linear Model
Object
oddsapiR Access Live Sports Odds from the Odds API
oddsratio Odds Ratio Calculation for GAM(M)s & GLM(M)s
oddstream Outlier Detection in Data Streams
odeGUTS Solve ODE for GUTS-RED-SD and GUTS-RED-IT Using
Compiled Code
odetector Outlier Detection Using Partitioning Clustering
Algorithms
odiffr Fast Pixel-by-Pixel Image Comparison Using
'odiff'
odin ODE Generation and Integration
odk Convert 'ODK' or 'XLSForm' to 'SPSS' Data Frame
odr Optimal Design and Statistical Power for
Experimental Studies Investigating Main,
Mediation, and Moderation Effects
odyssey Interface to the HAL Open Archive API
oecdoda Seamless Access to OECD Official Development
Assistance (ODA) Data
oeli Some Utilities for Developing Data Science
Software
oem Orthogonalizing EM: Penalized Regression for
Big Tall Data
oenb Tools for the OeNB Data Web Service
oews2020 May 2020 Occupational Employment and Wage
Statistics
oews2021 May 2021 Occupational Employment and Wage
Statistics
ofGEM A Meta-Analysis Approach with Filtering for
Identifying Gene-Level Gene-Environment
Interactions with Genetic Association Data
officedown Enhanced 'R Markdown' Format for 'Word' and
'PowerPoint'
officer Manipulation of Microsoft Word and PowerPoint
Documents
offlineChange Detect Multiple Change Points from Time Series
offsetreg An Extension of 'Tidymodels' Supporting Offset
Terms
ofhsyn Synthetic Our Future Health Data Generator
ofpetrial Design on-Farm Precision Field Agronomic Trials
oglcnac Processing and Analysis of 'O-GlcNAcAtlas' Data
ogrdbstats Analysis of Adaptive Immune Receptor Repertoire
Germ Line Statistics
ohenery Modeling of Ordinal Random Variables via
Softmax Regression
ohoegdm Ordinal Higher-Order Exploratory General
Diagnostic Model for Polytomous Data
ohsome An 'ohsome API' Client
ohun Optimizing Acoustic Signal Detection
ohvbd One Health VBD Hub
oii Crosstab and Statistical Tests for OII MSc
Stats Course
okBATHTUB Empirical Reservoir Eutrophication Modelling
with Oklahoma Calibration
okcolors A Set of Color Palettes Inspired by OK Go Music
Videos for 'ggplot2' in R
okxAPI An Unofficial Wrapper for 'okx exchange v5' API
okxr R Interface to the 'OKX' REST API
olctools Open Location Code Handling in R
oldr An Implementation of Rapid Assessment Method
for Older People
oligo Preprocessing tools for oligonucleotide arrays
oligoClasses Classes for high-throughput arrays supported by
oligo and crlmm
ollamar 'Ollama' Language Models
ollg Computes some Measures of OLL-G Family of
Distributions
ollggamma Odd Log-Logistic Generalized Gamma Probability
Distribution
olr Optimal Linear Regression
olsrr Tools for Building OLS Regression Models
omicsTools Omics Data Process Toolbox
omicwas Cell-Type-Specific Association Testing in Bulk
Omics Experiments
omnibus Helper Tools for Managing Data, Dates, Missing
Values, and Text
omock Creation of Mock Observational Medical Outcomes
Partnership Common Data Model
omopgenerics Methods and Classes for the OMOP Common Data
Model
omophub R Client for the 'OMOPHub' Medical Vocabulary
API
ompr Model and Solve Mixed Integer Linear Programs
ompr.roi A Solver for 'ompr' that Uses the R
Optimization Infrastructure ('ROI')
omsvg Build and Transform 'SVG' Objects
omu A Metabolomics Analysis Tool for Intuitive
Figures and Convenient Metadata Collection
onadata Data Sets for Keith McNulty's Handbook of
Graphs and Networks in People Analytics
onbabynames Names Given to Babies in Ontario Between 1917
and 2018
onbrand Templated Reporting Workflows in Word and
PowerPoint
once Execute Expensive Operations Only Once
oncmap Analyze Data from Electronic Adherence
Monitoring Devices
ondisc Algorithms and Data Structures for Large
Single-Cell Expression Matrices
oneclust Maximum Homogeneity Clustering for Univariate
Data
onehot Fast Onehot Encoding for Data.frames
oneinfl Estimates OIPP and OIZTNB Regression Models
onelogin Interact with the 'OneLogin' API
onemap Construction of Genetic Maps in Experimental
Crosses
onemapsgapi R Wrapper for the 'OneMap.Sg API'
onetime Run Code Only Once
onewaytests One-Way Tests in Independent Groups Designs
onion Octonions and Quaternions
onlineBcp Online Bayesian Methods for Change Point
Analysis
onlineCOV Online Change Point Detection in
High-Dimensional Covariance Structure
onlinePCA Online Principal Component Analysis
onlineforecast Forecast Modelling for Online Applications
onlineretail Online Retail Dataset
onls Orthogonal Nonlinear Least-Squares Regression
onmaRg Import Public Health Ontario's Ontario
Marginalization Index
onnx R Interface to 'ONNX'
onnxr Bindings to 'ONNX' Runtime
onpoint Helper Functions for Point Pattern Analysis
ons Download Data from the 'Office for National
Statistics'
onsr Client for the 'ONS' API
onsvplot National Road Safety Observatory (ONSV) Style
for 'ggplot2' Graphics
onsvtables National Road Safety Observatory (ONSV) Styles
for 'gt' Tables
ontoFAST Interactive Annotation of Characters with
Biological Ontologies
ontoProc processing of ontologies of anatomy, cell
lines, and so on
ontologyIndex Reading Ontologies into R
ontologyPlot Visualising Sets of Ontological Terms
ontologySimilarity Calculating Ontological Similarities
ontophylo Ontology-Informed Phylogenetic Comparative
Analyses
oolong Create Validation Tests for Automated Content
Analysis
oompaBase Class Unions, Matrix Operations, and Color
Schemes for OOMPA
oompaData Data to Illustrate OOMPA Algorithms
oosse Out-of-Sample R² with Standard Error Estimation
oottest Out-of-Treatment Testing
opGMMassessment Optimized Automated Gaussian Mixture Assessment
opImputation Optimal Selection of Imputation Methods for
Pain-Related Numerical Data
opa An Implementation of Ordinal Pattern Analysis
opalr 'Opal' Data Repository Client and 'DataSHIELD'
Utils
opdisDownsampling Optimal Distribution Preserving Down-Sampling
of Bio-Medical Data
openCR Open Population Capture-Recapture
openEBGM EBGM Disproportionality Scores for Adverse
Event Data Mining
openFDA 'openFDA' API
openMSE Easily Install and Load the 'openMSE' Packages
openNCAI Calculates a Natural Capital Assets Index
openNLP Apache OpenNLP Tools Interface
openNLPdata Apache OpenNLP Jars and Basic English Language
Models
openSkies Retrieval, Analysis and Visualization of Air
Traffic Data
openVA Automated Method for Verbal Autopsy
openai R Wrapper for OpenAI API
openaiRtools R Client for the 'OpenAI' API
openair Tools for the Analysis of Air Pollution Data
openairmaps Create Maps of Air Pollution Data
openalexR Getting Bibliographic Records from 'OpenAlex'
Database Using 'DSL' API
openappr Retrieve App Data from 'OpenAppBuilder'
openaq Access Air Quality Data from the 'OpenAQ' API
openbankeR R Client for Querying the UK 'Open Banking'
('Open Data') API
openblender Request <https://openblender.io> API Services
opencage Geocode with the OpenCage API
opencesp Generation and Evaluation of Synthetic Tabular
Datasets
opencis Import Data from Spanish Sociological Research
Center (CIS)
opencltools 'OpenCL' Tools for R Package Developers
opencpu Producing and Reproducing Results
opencv Bindings to 'OpenCV' Computer Vision Library
opendataformat Reading and Writing Open Data Format Files
opendatatoronto Access the City of Toronto Open Data Portal
opendotaR Interface for OpenDota API
openeo Client Interface for 'openEO' Servers
openesm Access the Open Experience Sampling Method
Database
opengraph Process Metadata from the 'Open Graph Protocol'
openholidaysR Provides Access to the 'OpenHolidays' API
openintro Datasets and Supplemental Functions from
'OpenIntro' Textbooks and Labs
openmetrics A 'Prometheus' Client for R Using the
'OpenMetrics' Format
openmpp Programmatic Interface to 'OpenM++'
openrouteservice An 'openrouteservice' API Client
openscoring 'Open Scoring' API Client
opensimplex2 Generate Multi-Dimensional Open Simplex Noise
openssl Toolkit for Encryption, Signatures and
Certificates Based on OpenSSL
opentripplanner Setup and connect to 'OpenTripPlanner'
openxlsx Read, Write and Edit xlsx Files
openxlsx2 Read, Write and Edit 'xlsx' Files
operator.tools Utilities for Working with R's Operators
operators Additional Binary Operators
opinAr Argentina's Public Opinion Toolbox
oppr Optimal Project Prioritization
optBiomarker Estimation of Optimal Number of Biomarkers for
Two-Group Microarray Based Classifications at a
Given Error Tolerance Level for Various
Classification Rules
optDesignSlopeInt Optimal Designs for Estimating the Slope
Divided by the Intercept
optR Optimization Toolbox for Solving Linear Systems
optRF Optimising Random Forest Stability by
Determining the Optimal Number of Trees
optband 'surv' Object Confidence Bands Optimized by
Area
optbdmaeAT Optimal Block Designs for Two-Colour cDNA
Microarray Experiments
optbin Optimal Binning of Data
optbinningR Optimal Binning Methods for Predictive Modeling
and Analytics
optconerrf Optimal Monotone Conditional Error Functions
optedr Calculating Optimal and D-Augmented Designs
optextras Tools to Support Optimization Possibly with
Bounds and Masks
optiSel Optimum Contribution Selection and Population
Genetics
optiSolve Linear, Quadratic, and Rational Optimization
optic Simulation Tool for Causal Inference Using
Longitudinal Data
optical Optimal Item Calibration
opticskxi OPTICS K-Xi Density-Based Clustering
opticut Likelihood Based Optimal Partitioning and
Indicator Species Analysis
optifunset Set Options if Unset
optim.functions Standard Benchmark Optimization Functions
optimCheck Graphical and Numerical Checks for Mode-Finding
Routines
optimLanduse Robust Land-Use Optimization
optimParallel Parallel Version of the L-BFGS-B Optimization
Method
optimStrat Choosing the Sample Strategy
optimalThreshold Bayesian Methods for Optimal Threshold
Estimation
optimall Allocate Samples Among Strata
optimbase R Port of the 'Scilab' Optimbase Module
optimflex Derivative-Based Optimization with User-Defined
Convergence Criteria
optimg General-Purpose Gradient-Based Optimization
optimization Flexible Optimization of Complex Loss Functions
with State and Parameter Space Constraints
optimizeR Unified Framework for Numerical Optimizers
optimizr Further Numerical Optimization Algorithms
optimos.prime Optimos Prime Helps Calculate Autoecological
Data for Biological Species
optimsimplex R Port of the 'Scilab' Optimsimplex Module
optimus Model Based Diagnostics for Multivariate
Cluster Analysis
optimx Expanded Replacement and Extension of the
'optim' Function
optional Optional Types and Pattern Matching
options Simple, Consistent Package Options
optionstrat Utilizes the Black-Scholes Option Pricing Model
to Perform Strategic Option Analysis and Plot
Option Strategies
optiscale Optimal Scaling
optistock Determine Optimum Stocking Times Used in
Fishery Enhancements
optmatch Functions for Optimal Matching
optparse Command Line Option Parser
optrcdmaeAT Optimal Row-Column Designs for Two-Colour cDNA
Microarray Experiments
optree Hierarchical Runtime Configuration Management
optrefine Optimally Refine Strata
optsize Optimal Plot Size Estimation for Field
Experiments
optweight Optimization-Based Stable Balancing Weights
opusminer OPUS Miner Algorithm for Filtered Top-k
Association Discovery
opusreader2 Read Spectroscopic Data from Bruker OPUS Binary
Files
orbital Predict with 'tidymodels' Workflows in
Databases
orbitr A Tidy Physics Engine for Building and
Visualizing Orbital Simulations
orbweaver Fast and Efficient Graph Data Structures
orca Computation of Graphlet Orbit Counts in Sparse
Graphs
orcamentoBR Download Official Data on Brazil's Federal
Budget
orcidtr Retrieve Data from the ORCID Public API
orclus Subspace Clustering Based on Arbitrarily
Oriented Projected Cluster Generation
ordDisp Separating Location and Dispersion in Ordinal
Regression Models
ordPanel Ordered Panel
ordbetareg Ordered Beta Regression Models with 'brms'
ordcrm Likelihood-Based Continual Reassessment Method
(CRM) Dose Finding Designs
orderanalyzer Extracting Order Position Tables from PDF-Based
Order Documents
ordered 'parsnip' Engines and Wrappers for Ordinal
Classification Models
ordering Test, Check, Verify, Investigate the Monotonic
Properties of Vectors
orderly Lightweight Reproducible Reporting
orders Sampling from k-th Order Statistics of New
Families of Distributions
orderstats Efficiently Generates Random Order Statistic
Variables
ordgam Additive Model for Ordinal Data using Laplace
P-Splines
ordiBreadth Ordinated Diet Breadth
ordinal Regression Models for Ordinal Data
ordinalClust Ordinal Data Clustering, Co-Clustering and
Classification
ordinalCont Ordinal Regression Analysis for Continuous
Scales
ordinalForest Ordinal Forests: Prediction and Variable
Ranking with Ordinal Target Variables
ordinalGOF Goodness-of-Fit Tests for Ordinal Regression
Models
ordinalLBM Co-Clustering of Ordinal Data via Latent
Continuous Random Variables
ordinalNet Penalized Ordinal Regression
ordinalRR Analysis of Repeatability and Reproducibility
Studies with Ordinal Measurements
ordinalTables Fit Models to Two-Way Tables with Correlated
Ordered Response Categories
ordinalbayes Bayesian Ordinal Regression for
High-Dimensional Data
ordinalgmifs Ordinal Regression for High-Dimensional Data
ordinalpattern Tests Based on Ordinal Patterns
ordinalsimr Compare Ordinal Endpoints Using Simulations
ordr A 'Tidyverse' Extension for Ordinations and
Biplots
ore An R Interface to the Onigmo Regular Expression
Library
oreo Large Amplitude Oscillatory Shear (LAOS)
orf Ordered Random Forests
org Organising Projects
orgR Analyse Text Files Created by Emacs' Org mode
organik Multi-Horizon Probabilistic Ensemble with
Copulas for Time Series Forecasting
organizr Shortcuts for File Creation with Informative
Prefixes
orgutils Helper Functions for Org Files
orientlib Support for Orientation Data
origami Generalized Framework for Cross-Validation
origin Explicitly Qualifying Namespaces by
Automatically Adding 'pkg::' to Functions
orisma Occupational Risk Integrated Systematic Mapping
and Analysis
orloca Operations Research LOCational Analysis Models
orloca.es Spanish version of orloca package. Modelos de
localizacion en investigacion operativa
ormPlot Advanced Plotting of Ordinal Regression Models
oro.dicom Rigorous - DICOM Input / Output
oro.nifti Rigorous - 'NIfTI' + 'ANALYZE' + 'AFNI' : Input
/ Output
oro.pet Rigorous - Positron Emission Tomography
orsifronts Southern Ocean Frontal Distributions (Orsi)
orsk Converting Odds Ratio to Relative Risk in
Cohort Studies with Partial Data Information
ort Create a Data Frame Representation of an Image
orthGS Orthology vs Paralogy Relationships among
Glutamine Synthetase from Plants
orthanc Programmatic Interface to 'Orthanc' DICOM
Servers
orthoDr Semi-Parametric Dimension Reduction Models
Using Orthogonality Constrained Optimization
orthogonalsplinebasis Orthogonal B-Spline Basis Functions
orthopolynom Collection of Functions for Orthogonal and
Orthonormal Polynomials
osDesign Design, Planning and Analysis of Observational
Studies
osbng Geospatial Grid Indexing with the British
National Grid
oscar Optimal Subset Cardinality Regression (OSCAR)
Models Using the L0-Pseudonorm
osd Orthogonal Signal Deconvolution for Spectra
Deconvolution in GC-MS and GCxGC-MS Data
osdatahub Easier Interaction with the Ordnance Survey
Data Hub
osdc Open Source Diabetes Classifier for Danish
Registers
osfr Interface to the 'Open Science Framework'
('OSF')
oskeyring Raw System Credential Store Access from R
osktnorm A Moment-Targeting Normality Transformation
Based on Tukey g-h Distribution
osmapiR 'OpenStreetMap' API
osmclass Classify Open Street Map Features
osmdata Import 'OpenStreetMap' Data as Simple Features
or Spatial Objects
osmextract Download and Import Open Street Map Data
Extracts
osqp Quadratic Programming Solver using the 'OSQP'
Library
osrm Interface Between R and the OpenStreetMap-Based
Routing Service OSRM
osrm.backend Bindings for 'Open Source Routing Machine'
osrmr Wrapper for the 'OSRM' API
osum Provide Summary Information About R Objects
otTensor Optimal Tensor Transport
otargen Access Open Target
otel OpenTelemetry R API
otelsdk R SDK and Exporters for OpenTelemetry
otinference Inference for Optimal Transport
otp One Time Password Generation and Verification
otpr An R Wrapper for the 'OpenTripPlanner' REST API
otrKM Optimal Treatment Regimes in Survival Contexts
with Kaplan-Meier-Like Estimators
otrimle Robust Model-Based Clustering
otsfeatures Ordinal Time Series Analysis
ottr An R Autograding Extension for Otter-Grader
ottrpal Companion Tools for Open-Source Tools for
Training Resources (OTTR)
otuSummary Summarizing OTU Table Regarding the
Composition, Abundance and Beta Diversity of
Abundant and Rare Biospheres
ouch Ornstein-Uhlenbeck Models for Phylogenetic
Comparative Hypotheses
ouladFormat Loads and Formats the Open University Learning
Analytics Dataset for Data Analysis
outForest Multivariate Outlier Detection and Replacement
outbreaker2 Bayesian Reconstruction of Disease Outbreaks by
Combining Epidemiologic and Genomic Data
outbreaks A Collection of Disease Outbreak Data
outcomerate AAPOR Survey Outcome Rates
outlierMBC Sequential Outlier Identification for
Model-Based Clustering
outlierensembles A Collection of Outlier Ensemble Algorithms
outliers Tests for Outliers
outliers.ts.oga Efficient Outlier Detection for Large Time
Series Databases
outlierspinner Geometric Multivariate Outlier Detection via
Random Directional Probing
outliertree Explainable Outlier Detection Through Decision
Tree Conditioning
outlying Outliers Detection
outreg Regression Table for Publication
outrigger Outrigger Regression
outstandR Model-Based Standardisation for Indirect
Treatment Comparison with Limited Subject-Level
Data
ovbsa Sensitivity Analysis of Omitted Variable Bias
overdisp Overdispersion in Count Data Multiple
Regression Analysis
overlap Estimates of Coefficient of Overlapping for
Animal Activity Patterns
overlapping Estimation of Overlapping in Empirical
Distributions
overlapptest Test Overlapping of Polygons Against Random
Rotation
overshiny Interactive Overlays on 'shiny' Plots
overtureR Load 'Overture' Datasets as 'dbplyr' and
'sf'-Ready Data Frames
overturemapsr Download Overture Maps Data in R
overviewR Easily Extracting Information About Your Data
owd Open Working Directory
owdbr Open Welfare Data Brazil
owidR Import Data from Our World in Data
owidapi Access the Our World in Data Chart API
ows4R Interface to OGC Web-Services (OWS)
oxcAAR Interface to 'OxCal' Radiocarbon Calibration
oysteR Scans R Projects for Vulnerable Third Party
Dependencies
oystermapR Predict and Map Oyster Growth Suitability from
Environmental Data
oz Plot the Australian Coastline and States
ozbabynames Australian Popular Baby Names
ozmaps Australia Maps
p3state.msm Analyzing Survival Data from an Illness-Death
Model
pARI Permutation-Based All-Resolutions Inference
pAnalysis Benchmarking and Rescaling R2 using Noise
Percentile Analysis
pBrackets Plot Brackets
pCODE Estimation of an Ordinary Differential Equation
Model by Parameter Cascade Method
pCalibrate Bayesian Calibrations of p-Values
pECV Entrywise Splitting Cross-Validation for Factor
Models
pEPA Tests of Equal Predictive Accuracy for Panels
of Forecasts
pGPx Pseudo-Realizations for Gaussian Process
Excursions
pGRN Single-Cell RNA Sequencing Pseudo-Time Based
Gene Regulatory Network Inference
pKSEA Prediction-Based Kinase-Substrate Enrichment
Analysis
pMEM Predictive Moran's Eigenvector Maps
pPCA Partial Principal Component Analysis of
Partitioned Large Sparse Matrices
pQTLdata A Collection of Proteome Panels and Metadata
pRF Permutation Significance for Random Forests
pROC Display and Analyze ROC Curves
pRSR Test of Periodicity using Response Surface
Regression
pRecipe Precipitation R Recipes
pRepDesigns Partially Replicated (p-Rep) Designs
pTITAN2 Permutations of Treatment Labels and TITAN2
Analysis
pa Performance Attribution for Equity Portfolios
paar Precision Agriculture Data Analysis
pacheck Probabilistic Analysis Check Package
pack Convert Values to/from Raw Vectors
packHV A few Useful Functions for Statisticians
packMBPLSDA Multi-Block Partial Least Squares Discriminant
Analysis
packageDiff Compare R Package Differences
packageRank Computation and Visualization of Package
Download Counts and Percentile Ranks
packagefinder Comfortable Search for R Packages on CRAN,
Either Directly from the R Console or with an R
Studio Add-in
packagepal Guidelines and Checklists for Building
CRAN-Worthy Packages
packager Create, Build and Maintain Packages
packcircles Circle Packing
packrat A Dependency Management System for Projects and
their R Package Dependencies
pacman Package Management Tool
pacotest Testing for Partial Copulas and the Simplifying
Assumption in Vine Copulas
pacs Supplementary Tools for R Packages Developers
pacta.loanbook Easily Install and Load PACTA for Banks
Packages
pacta.multi.loanbook Run 'PACTA' on Multiple Loan Books Easily
pacu Precision Agriculture Computational Utilities
pacviz Pac-Man Visualization Package
paddleR Wrapper for 'Paddle' API (Application
Programming Interface)
padr Quickly Get Datetime Data Ready for Analysis
pafdR Book Companion for Processing and Analyzing
Financial Data with R
pagedown Paginate the HTML Output of R Markdown with CSS
for Print
pagemap Create Mini Map for Web Pages
pagenum Put Page Numbers on Graphics
pagoda2 Single Cell Analysis and Differential
Expression
painbow Use XKCD's "Painbow" Colormap in ggplot2
painter Creation and Manipulation of Color Palettes
paintingr Painting Palettes Generator
paintmap Plotting Paintmaps
pairsD3 D3 Scatterplot Matrices
pairscale Pairwise Rescaling of Numeric Matrices
pairwise Rasch Model Parameters by Pairwise Algorithm
pairwiseCI Confidence Intervals for Two Sample Comparisons
pairwiseLLM Pairwise Comparison Tools for Large Language
Model-Based Writing Evaluation
paisaje Spatial and Environmental Data Tools for
Landscape Ecology
pak Another Approach to Package Installation
pakret Cite 'R' Packages on the Fly in 'R Markdown'
and 'Quarto'
palaeoSig Significance Tests for Palaeoenvironmental
Reconstructions
palaeoverse Prepare and Explore Data for Palaeobiological
Analyses
palasso Sparse Regression with Paired Covariates
pald Partitioned Local Depth for Community Structure
in Data
paleoAM Simulating Assemblage Models of Abundance for
the Fossil Record
paleoDiv Extracting and Visualizing Paleobiodiversity
paleoTS Analyze Paleontological Time-Series
paleobioDB Download and Process Data from the Paleobiology
Database
paleobuddy Simulating Diversification Dynamics
paleomorph Geometric Morphometric Tools for Paleobiology
paleopop Pattern-Oriented Modeling Framework for Coupled
Niche-Population Paleo-Climatic Models
paleotree Paleontological and Phylogenetic Analyses of
Evolution
palette Color Scheme Helpers
paletteer Comprehensive Collection of Color Palettes
paletteknife Create Colour Scales and Legend from Continuous
or Categorical Vectors
palettephines Analytical Color Palettes for Philippine
Phenology
palettes Methods for Colour Vectors and Colour Palettes
palettesForR GPL Palettes Copied from 'Gimp' and 'Inkscape'
palettetown Use Pokemon Inspired Colour Palettes
palimpsestr Probabilistic Decomposition of Archaeological
Palimpsests
palinsol Insolation for Palaeoclimate Studies
palm Fitting Point Process Models via the Palm
Likelihood
palmerpenguins Palmer Archipelago (Antarctica) Penguin Data
palmtree Partially Additive (Generalized) Linear Model
Trees
palr Colour Palettes for Data
pals Color Palettes, Colormaps, and Tools to
Evaluate Them
pam Fast and Efficient Processing of PAM Data
pamm Power Analysis for Random Effects in Mixed
Models
pammtools Piece-Wise Exponential Additive Mixed Modeling
Tools for Survival Analysis
pamr Pam: Prediction Analysis for Microarrays
pams Profile Analysis via Multidimensional Scaling
pan Multiple Imputation for Multivariate Panel or
Clustered Data
pandemics Monitoring a Developing Pandemic with Available
Data
pandemonium High Dimensional Analysis in Linked Spaces
pander An R 'Pandoc' Writer
pandoc Manage and Run Universal Converter 'Pandoc'
from 'R'
pandocfilters Pandoc Filters for R
panelPomp Inference for Panel Partially Observed Markov
Processes
panelSUR Two-Way Error Component SUR Systems Estimation
on Unbalanced Panel Data
panelView Visualizing Panel Data
panelWranglR Panel Data Wrangling Tools
paneldesc Descriptive Analysis and Visualization for
Panel Data
panelhetero Panel Data Analysis with Heterogeneous Dynamics
panelr Regression Models and Utilities for Repeated
Measures and Panel Data
panelsummary Create Publication-Ready Regression Tables with
Panels
paneltests Panel Data Pre-Testing and Diagnostic Suite
panelvar Panel Vector Autoregression
pangaear Client for the 'Pangaea' Database
pangoling Access to Large Language Model Predictions
pannotator Visualisation and Annotation of 360 Degree
Imagery
papaja Prepare American Psychological Association
Journal Articles with R Markdown
papeR A Toolbox for Writing Pretty Papers and Reports
paperplanes Distance Recordings from a Paper Plane
Folding/Flying Experiment
parSim Parallel Simulator
parTimeROC Parametric Time-Dependent Receiver Operating
Characteristic
parabar Progress Bar for Parallel Tasks
parade Pen's Income Parades
paradox Define and Work with Parameter Spaces for
Complex Algorithms
parafac4microbiome Parallel Factor Analysis Modelling of
Longitudinal Microbiome Data
parallelDist Parallel Distance Matrix Computation using
Multiple Threads
parallelMCMCcombine Combining Subset MCMC Samples to Estimate a
Posterior Density
parallelMap Unified Interface to Parallelization Back-Ends
parallelPlot `htmlwidget` for a Parallel Coordinates Plot
parallelly Enhancing the 'parallel' Package
parallelpam Parallel Partitioning-Around-Medoids (PAM) for
Big Sets of Data
param2moment Raw, Central and Standardized Moments of
Parametric Distributions
paramDemo Parametric and Non-Parametric Demographic
Functions and Applications
paramGUI A Shiny GUI for some Parameter Estimation
Examples
parameters Processing of Model Parameters
paramhetero Numeric and Visual Comparisons of Heterogeneity
in Parametric Models
paramix Aggregate and Disaggregate Continuous
Parameters for Compartmental Models
paramlink Parametric Linkage and Other Pedigree Analysis
in R
paramlink2 Parametric Linkage Analysis
paramsim Parameterized Simulation
paramtest Run a Function Iteratively While Varying
Parameters
paran Horn's Test of Principal Components/Factors
parasiteR A Theorical-Practical Approach to
Parasitological Data Analysis
parcats Interactive Parallel Categories Diagrams for
'easyalluvial'
parcr Construct Parsers for Structured Text Files
parfm Parametric Frailty Models
pargasite Pollution-Associated Risk Geospatial Analysis
Site
parglm Parallel GLM
parma Portfolio Allocation and Risk Management
Applications
parmigene Parallel Mutual Information Estimation for Gene
Network Reconstruction
parmsurvfit Parametric Models for Survival Data
parqr Read in Multi-Part Parquet Files
parquetize Convert Files to Parquet Format
parseLatex Parse 'LaTeX' Code
parseRPDR Parse and Manipulate Research Patient Data
Registry ('RPDR') Text Queries
parsec Partial Orders in Socio-Economics
parsedate Recognize and Parse Dates in Various Formats,
Including All ISO 8601 Formats
parsel Parallel Dynamic Web-Scraping Using 'RSelenium'
parsermd Formal Parser and Related Tools for R Markdown
Documents
parsnip A Common API to Modeling and Analysis Functions
partDSA Partitioning Using Deletion, Substitution, and
Addition Moves
partR2 Partitioning R2 in GLMMs
partialised Partialised Functions
partialling.out Residuals from Partial Regressions
particle.swarm.optimisation
Optimisation with Particle Swarm Optimisation
particles A Graph Based Particle Simulator Based on
D3-Force
partition Agglomerative Partitioning Framework for
Dimension Reduction
partitionBEFsp Methods for Calculating the Loreau & Hector
2001 BEF Partition
partitionComparison Implements Measures for the Comparison of Two
Partitions
partitionMetric Compute a distance metric between two
partitions of a set
partitions Additive Partitions of Integers
partools Tools for the 'Parallel' Package
partsm Periodic Autoregressive Time Series Models
parttime Partial Datetime Handling
parttree Visualize Simple 2-D Decision Tree Partitions
party A Laboratory for Recursive Partytioning
partycoloR Extract Party Colors and Logos from Wikipedia
partykit A Toolkit for Recursive Partytioning
parzer Parse Messy Geographic Coordinates
pasadr An Implementation of Process-Aware Stealthy
Attack Detection(PASAD)
pass.lme Power and Sample Size for Linear Mixed Effect
Models
passt Probability Associator Time (PASS-T)
password Create Random Passwords
pastaPlot Spaghetti-Plot Fixed and Random Effects of
Linear Mixed Models
pastboon Simulation of Parameterized Stochastic Boolean
Networks
pastclim Manipulate Time Series of Climate
Reconstructions
pasteAsComment 'RStudio' Addin to Paste the Clipboard as a
Comment Block or a 'roxygen' Block
pastecs Package for Analysis of Space-Time Ecological
Series
patchDVI Package to Patch '.dvi' or '.synctex' Files
patchSynctex Communication Between Editor and Viewer for
Literate Programs
patchwork The Composer of Plots
patentr Access USPTO Bulk Data in Tidy Rectangular
Format
patentsview An R Client to the 'PatentsView' API
pater Turn a URL Pathname into a Regular Expression
path.chain Concise Structure for Chainable Paths
pathdb Comprehensive Database for Pathway Enrichment
Analysis
pathfindR Enrichment Analysis Utilizing Active
Subnetworks
pathfindR.data Data Package for 'pathfindR'
pathling A Library for using 'Pathling'
pathlit An SDK for the PathLit Engine
pathmodelfit Path Component Fit Indices for Latent
Structural Equation Models
paths An Imputation Approach to Estimating
Path-Specific Causal Effects
pathview a tool set for pathway based data integration
and visualization
pathviewr Wrangle, Analyze, and Visualize Animal Movement
Data
patientProfilesVis Visualization of Patient Profiles
patrick Parameterized Unit Testing
pattern.checks Identifies Patterned Responses in Scales
patternator Feature Extraction from Female Brown Anole
Lizard Dorsal Patterns
patterncausality Pattern Causality Algorithm
patternize Quantification of Color Pattern Variation
patternplot Versatile Pie Charts, Ring Charts, Bar Charts
and Box Plots using Patterns, Colors and Images
pavo Perceptual Analysis, Visualization and
Organization of Spectral Colour Data
pawacc Physical Activity with Accelerometers
paws Amazon Web Services Software Development Kit
paws.analytics 'Amazon Web Services' Analytics Services
paws.application.integration
'Amazon Web Services' Application Integration
Services
paws.common Paws Low-Level Amazon Web Services API
paws.compute 'Amazon Web Services' Compute Services
paws.cost.management 'Amazon Web Services' Cost Management Services
paws.customer.engagement
'Amazon Web Services' Customer Engagement
Services
paws.database 'Amazon Web Services' Database Services
paws.developer.tools 'Amazon Web Services' Developer Tools Services
paws.end.user.computing
'Amazon Web Services' End User Computing
Services
paws.machine.learning 'Amazon Web Services' Machine Learning Services
paws.management 'Amazon Web Services' Management & Governance
Services
paws.networking 'Amazon Web Services' Networking & Content
Delivery Services
paws.security.identity
'Amazon Web Services' Security, Identity, &
Compliance Services
paws.storage 'Amazon Web Services' Storage Services
pawscore Pain Assessment at Withdrawal Speeds (PAWS)
pbANOVA Parametric Bootstrap for ANOVA Models
pbapply Adding Progress Bar to '*apply' Functions
pbatR Pedigree/Family-Based Genetic Association Tests
Analysis and Power
pbbd Position Balanced and Nearly Position Balanced
Block Designs
pbcc Percentile-Based Control Chart
pbdMPI R Interface to MPI for HPC Clusters
(Programming with Big Data Project)
pbdSLAP Programming with Big Data -- Scalable Linear
Algebra Packages
pbdZMQ Programming with Big Data -- Interface to
'ZeroMQ'
pbiparams Safe Parameter Extraction for Power BI R
Scripts
pbivnorm Vectorized Bivariate Normal CDF
pbkrtest Parametric Bootstrap, Kenward-Roger and
Satterthwaite Based Methods for Test in Mixed
Models
pblm Bivariate Additive Marginal Regression for
Categorical Responses
pbm Protein Binding Models
pbmcapply Tracking the Progress of Mc*pply with Progress
Bar
pbo Probability of Backtest Overfitting
pboost Profile Boosting Framework for Parametric
Models
pbr Find a Cold One Near You
pbs Periodic B Splines
pbv Probabilities for Bivariate Normal Distribution
pc Pattern Causality Analysis
pcLasso Principal Components Lasso
pcSteiner Convenient Tool for Solving the
Prize-Collecting Steiner Tree Problem
pcaL1 L1-Norm PCA Methods
pcaMethods A collection of PCA methods
pcaPP Robust PCA by Projection Pursuit
pcadapt Fast Principal Component Analysis for Outlier
Detection
pcal Calibration of P-Values for Point Null
Hypothesis Testing
pcalg Methods for Graphical Models and Causal
Inference
pcaone Fast and Accurate Randomized Singular Value
Decomposition Algorithms with 'PCAone'
pcatsAPIclientR 'PCATS' API Client
pccc Pediatric Complex Chronic Conditions
pcdid Principal Components Difference-in-Differences
pcds Proximity Catch Digraphs and Their Applications
pcds.ugraph Underlying Graphs of Proximity Catch Digraphs
and Their Applications
pcensmix Model Fitting to Progressively Censored Mixture
Data
pcev Principal Component of Explained Variance
pcg Preconditioned Conjugate Gradient Algorithm for
solving Ax=b
pcgen Reconstruction of Causal Networks for Data with
Random Genetic Effects
pch Piecewise Constant Hazard Models for Censored
and Truncated Data
pchc Bayesian Network Learning with the PCHC and
Related Algorithms
pci A Collection of Process Capability Index
Functions
pciR Proactive Conservation Index
pcmabc Approximate Bayesian Computations for
Phylogenetic Comparative Methods
pcnetmeta Patient-Centered Network Meta-Analysis
pcpr Principal Component Pursuit for Environmental
Epidemiology
pcreg Advanced Methods for Principal Component
Analysis and Principal Component Regression
pcse Panel-Corrected Standard Error Estimation in R
pcsstools Tools for Regression Using Pre-Computed Summary
Statistics
pct Propensity to Cycle Tool
pctax Professional Comprehensive Omics Data Analysis
pcts Periodically Correlated and Periodically
Integrated Time Series
pcutils Some Useful Functions for Statistics and
Visualization
pcv Procrustes Cross-Validation
pcvr Plant Phenotyping and Bayesian Statistics
pdInfoBuilder Platform Design Information Package Builder
pdR Threshold Model and Unit Root Tests in
Cross-Section and Time Series Data
pdSpecEst An Analysis Toolbox for Hermitian Positive
Definite Matrices
pda Privacy-Preserving Distributed Algorithms
pdc Permutation Distribution Clustering
pdcor Fast and Light-Weight Partial Distance
Correlation
pder Panel Data Econometrics with R
pdfCluster Cluster Analysis via Nonparametric Density
Estimation
pdfcombiner Graphical User Interface for Manipulating PDF
and Image Files
pdfetch Fetch Economic and Financial Time Series Data
from Public Sources
pdfminer Read Portable Document Format (PDF) Files
pdfsearch Search Tools for PDF Files
pdftables Programmatic Conversion of PDF Tables
pdftools Text Extraction, Rendering and Converting of
PDF Documents
pdi Phenotypic Index Measures for Oak Decline
Severity
pdist Partitioned Distance Function
pdp Partial Dependence Plots
pdqr Work with Custom Distribution Functions
pdt Permutation Distancing Test
pdxTrees Data Package of Portland, Oregon Trees
pdynmc Moment Condition Based Estimation of Linear
Dynamic Panel Data Models
peRiodiCS Functions for Generating Periodic Curves
peacesciencer Tools and Data for Quantitative Peace Science
Research
peacots Periodogram Peaks in Correlated Time Series
peakRAM Monitor the Total and Peak RAM Used by an
Expression or Function
pearson7 Maximum Likelihood Inference for the Pearson
VII Distribution with Shape Parameter 3/2
pec Prediction Error Curves for Risk Prediction
Models in Survival Analysis
pecan Portfolio for Economic Complexity Analysis and
Navigation
pecanr Partial Eta-Squared for Crossed, Nested, and
Mixed Linear Mixed Models
pecora Permutation Conditional Random Tests
pedFamilias Import and Export 'Familias' Files
pedMermaid Pedigree Mermaid Syntax
pedSimulate Pedigree, Genetic Merit, Phenotype, and
Genotype Simulation
pedalfast.data PEDALFAST Data
pedbp Pediatric Blood Pressure
pedbuildr Pedigree Reconstruction
pedgene Gene-Level Variant Association Tests for
Pedigree Data
pedigree Pedigree Functions
pedigreeTools Versatile Functions for Working with Pedigrees
pedigreemm Pedigree-Based Mixed-Effects Models
pedmut Mutation Models for Pedigree Likelihood
Computations
pedometrics Miscellaneous Pedometric Tools
pedprobr Probability Computations on Pedigrees
pedquant Public Economic Data and Quantitative Analysis
pedsuite Easy Installation of the 'pedsuite' Packages
for Pedigree Analysis
pedtools Creating and Working with Pedigrees and Marker
Data
pedtricks Visualize, Summarize and Simulate Data from
Pedigrees
pegas Population and Evolutionary Genetics Analysis
System
pegs Pseudo-Expectation Gauss-Seidel
pell Data About Historic Pell Grant Distribution in
the US
pema Penalized Meta-Analysis
pempi Proportion Estimation with Marginal Proxy
Information
pems.utils Portable Emissions (and Other Mobile)
Measurement System Utilities
pemultinom L1-Penalized Multinomial Regression with
Statistical Inference
penAFT Fit the Semiparametric Accelerated Failure Time
Model with Elastic Net and Sparse Group Lasso
Penalties
penMSM Estimating Regularized Multi-state Models Using
L1 Penalties
penalized L1 (Lasso and Fused Lasso) and L2 (Ridge)
Penalized Estimation in GLMs and in the Cox
Model
penalizedSVM Feature Selection SVM using Penalty Functions
penalizedcdf Estimate a Penalized Linear Model using the CDF
Penalty Function
penalizedclr Integrative Penalized Conditional Logistic
Regression
penaltyLearning Penalty Learning
pencal Penalized Regression Calibration for the
Dynamic Prediction of Survival
penetrance Methods for Penetrance Estimation in
Family-Based Studies
penfa Single- And Multiple-Group Penalized Factor
Analysis
penppml Penalized Poisson Pseudo Maximum Likelihood
Regression
pensar LLM Wiki Engine
pense Penalized Elastic Net S/MM-Estimator of
Regression
pensim Simulation of High-Dimensional Data and
Parallelized Repeated Penalized Regression
pensynth Penalized Synthetic Control Estimation
peopleanalytics Data Sets for Craig Starbuck's Book, "The
Fundamentals of People Analytics: With
Applications in R"
peopleanalyticsdata Data Sets for Keith McNulty's Handbook of
Regression Modeling in People Analytics
pep725 Pan-European Phenological Data Analysis
pepdiff Differential Abundance Analysis for
Phosphoproteomics Data
pepe Data Manipulation
peperr Parallelised Estimation of Prediction Error
peppm Piecewise Exponential Distribution with Random
Time Grids
peppwR Power Analysis for Phosphopeptide Abundance
Hypothesis Test
pepr Reading Portable Encapsulated Projects
peptoolkit A Toolkit for Using Peptide Sequences in
Machine Learning
pequod Colour Palette for Reading and Code, Inspired
by Moby-Dick
perARMA Periodic Time Series Analysis
peramo Permutation Tests for Randomization Model
perccalc Estimate Percentiles from an Ordered
Categorical Variable
percentiles Calculate (Stratified) Percentiles
performance Assessment of Regression Models Performance
periscope Enterprise Streamlined 'Shiny' Application
Framework
periscope2 Enterprise Streamlined 'shiny' Application
Framework Using 'bs4Dash'
perm Exact or Asymptotic Permutation Tests
permChacko Chacko Test for Order-Restriction with
Permutation
permPATH Permutation Based Gene Expression Pathway
Analysis
permRand Permutation Randomization
permimp Conditional Permutation Importance
perms Fast Permutation Computation
permubiome A Permutation Based Test for Biomarker
Discovery in Microbiome Data
permuco Permutation Tests for Regression, (Repeated
Measures) ANOVA/ANCOVA and Comparison of
Signals
permutations The Symmetric Group: Permutations of a Finite
Set
permute Functions for Generating Restricted
Permutations of Data
permutes Permutation Tests for Time Series Data
permutest Run Permutation Tests and Construct Associated
Confidence Intervals
perplexR A Coding Assistant using Perplexity's Large
Language Models
perry Resampling-Based Prediction Error Estimation
for Regression Models
perryExamples Examples for Integrating Prediction Error
Estimation into Regression Models
persDx Personalized Diagnostics Rules for Subgroup
Identification and Personalized Biomarker
Discovery
persistence Optimal Graph Partition using the Persistence
personalized Estimation and Validation Methods for Subgroup
Identification and Personalized Medicine
personalized2part Two-Part Estimation of Treatment Rules for
Semi-Continuous Data
personalr Automated Personal Package Setup
personnelSelectionUtility
Utility Analysis Methods for Personnel
Selection
personr Test Your Personality
perspectev Permutation of Species During Turnover Events
perspectiveR Interactive Pivot Tables and Visualizations
with 'Perspective'
persval Computing Personal Values Scores
perturbR Random Perturbation of Count Matrices
peruflorads43 Check Threatened Plant Species Status Against
Peru's Supreme Decree 043-2006-AG
perumammals Taxonomic Backbone and Name Validation Tools
for Mammals of Peru
peruse A Tidy API for Sequence Iteration and Set
Comprehension
perutimber Catalogue of the Timber Forest Species of the
Peruvian Amazon
pervasive Pervasiveness Functions for Correlational Data
pesel Automatic Estimation of Number of Principal
Components in PCA
pestr Interface to Download Data on Pests and Hosts
from 'EPPO'
petersenlab A Collection of R Functions by the Petersen Lab
peticontrast Professional Contrast Coding for OLS Models
pewdata Reproducible Retrieval of Pew Research Center
Datasets
pexm Loading a JAGS Module for the Piecewise
Exponential Distribution
pez Phylogenetics for the Environmental Sciences
pfclust Power Fuzzy Clustering and Cluster-Wise
Regression
pfica Independent Components Analysis Techniques for
Functional Data
pfr Interface to the 'C++' Library 'Pf'
pfwim Food Web Construction for Paleo Communities
pg Polya Gamma Distribution Sampler
pgKDEsphere Parametrically Guided Kernel Density Estimator
for Spherical Data
pgTools Functions for Generating PostgreSQL
Statements/Scripts
pgam Poisson-Gamma Additive Models
pgdraw Generate Random Samples from the Polya-Gamma
Distribution
pgee.mixed Penalized Generalized Estimating Equations for
Bivariate Mixed Outcomes
pgenlibr 'PLINK' 2 Binary (.pgen) Reader
pgirmess Spatial Analysis and Data Mining for Field
Ecologists
pglm Panel Generalized Linear Models
pgmm Parsimonious Gaussian Mixture Models
pgnorm The p-Generalized Normal Distribution
pgraph Build Dependency Graphs using Projection
pguIMP Visually Guided Preprocessing of Bioanalytical
Laboratory Data
ph2bayes Bayesian Single-Arm Phase II Designs
ph2mult Phase II Clinical Trial Design for Multinomial
Endpoints
phacking Sensitivity Analysis for p-Hacking in
Meta-Analyses
phangorn Phylogenetic Reconstruction and Analysis
phantSEM Create Phantom Variables in Structural Equation
Models for Sensitivity Analyses
pharmaRTF Enhanced RTF Wrapper for Use with Existing
Table Packages
pharmaverse Navigate 'Pharmaverse'
pharmaverseadam ADaM Test Data for the 'Pharmaverse' Family of
Packages
pharmaverseadamjnj J&J Innovative Medicine ADaM Test Data
pharmaverseraw Raw Data for 'pharmaversesdtm' Package
pharmaversesdtm SDTM Test Data for the 'Pharmaverse' Family of
Packages
pharmaversesdtmjnj J&J Innovative Medicine SDTM Test Data
pharmr Interface to the 'Pharmpy' 'Pharmacometrics'
Library
phase Analyse Biological Time-Series Data
phase12designs Comprehensive Tools for Running Model-Assisted
Phase I/II Trial Simulations
phase1PRMD Personalized Repeated Measurement Design for
Phase I Clinical Trials
phase1RMD Repeated Measurement Design for Phase I
Clinical Trial
phateR PHATE - Potential of Heat-Diffusion for
Affinity-Based Transition Embedding
phd Permutation Testing in High-Dimensional Linear
Models
phdcocktail Enhance the Ease of R Experience as an Emerging
Researcher
pheatmap Pretty Heatmaps
phecodemap Visualization for PheCode Mapping with ICD-9
and ICD-10-CM Codes
phenModel Insect Phenology Model Evaluation Based on
Daily Temperatures
phenesse Estimate Phenological Metrics using
Presence-Only Data
phenex Auxiliary Functions for Phenological Data
Analysis
phenmod Auxiliary Functions for Phenological Data
Processing, Modelling and Result Handling
pheno Auxiliary Functions for Phenological Data
Analysis
phenoCDM Continuous Development Models for Incremental
Time-Series Analysis
phenocamr Facilitates 'PhenoCam' Data Access and Time
Series Post-Processing
phenofit Extract Remote Sensing Vegetation Phenology
phenolocrop Time-Series Models to the Crop Phenology
phenology Tools to Manage a Parametric Function that
Describes Phenology and More
phenomap Projecting Satellite-Derived Phenology in Space
phenopix Process Digital Images of a Vegetation Cover
phers Calculate Phenotype Risk Scores
phia Post-Hoc Interaction Analysis
philentropy Similarity and Distance Quantification Between
Probability Functions
phinterval Set Operations on Time Intervals
phoenics Pathways Longitudinal and Differential Analysis
in Metabolomics
phoenix The Phoenix Pediatric Sepsis and Septic Shock
Criteria
phonR Tools for Phoneticians and Phonologists
phonTools Tools for Phonetic and Acoustic Analyses
phonenumber Convert Letters to Numbers and Back as on a
Telephone Keypad
phonetisr A Naive IPA Tokeniser
phonfieldwork Linguistic Phonetic Fieldwork Tools
phonics Phonetic Spelling Algorithms
phosphoricons 'Phosphor' Icons for R
photobiology Photobiological Calculations
photobiologyFilters Spectral Transmittance and Spectral Reflectance
Data
photobiologyInOut Read Spectral and Logged Data from Foreign
Files
photobiologyLEDs Spectral Data for Light-Emitting-Diodes
photobiologyLamps Spectral Irradiance Data for Lamps
photobiologyPlants Plant Photobiology Related Functions and Data
photobiologySensors Response Data for Light Sensors
photobiologySun Data for Sunlight Spectra
photobiologyWavebands Waveband Definitions for UV, VIS, and IR
Radiation
photon High-Performance Geocoding using 'photon'
photosynthesis Tools for Plant Ecophysiology & Modeling
photosynthesisLRC Nonlinear Least Squares Models for
Photosynthetic Light Response
phrases Phrasal Verbs in English Club Website
phscs Philippine Statistical Classification Systems
phsmethods Standard Methods for Use in Public Health
Scotland
phsopendata Extract from the Scottish Health and Social
Care Open Data Platform
phuassess Proportional Habitat Use Assessment
phutil Persistence Homology Utilities
phyclust Phylogenetic Clustering (Phyloclustering)
phyext2 An Extension (for Package 'SigTree') of Some of
the Classes in Package 'phylobase'
phylepic Combined Visualisation of Phylogenetic and
Epidemiological Data
phylin Spatial Interpolation of Genetic Data
phyloTop Calculating Topological Properties of
Phylogenies
phyloatlas Access to the 'Phylo-Species Atlas' of
Empirical Phylogenies
phylobase Base Package for Phylogenetic Structures and
Comparative Data
phylocanvas Interactive Phylogenetic Trees Using the
'Phylocanvas' JavaScript Library
phylocomr Interface to 'Phylocom'
phylogram Dendrograms for Evolutionary Analysis
phylolm Phylogenetic Linear Regression
phylolm.hp Hierarchical Partitioning of R2 for
Phylogenetic Linear Regression
phylometrics Estimating Statistical Errors of Phylogenetic
Metrics
phylopairs Comparative Analyses of Lineage-Pair Traits
phylopath Perform Phylogenetic Path Analysis
phyloraster Evolutionary Diversity Metrics for Raster Data
phyloregion Biogeographic Regionalization and Macroecology
phylosamp Sample Size Calculations for Molecular and
Phylogenetic Studies
phylosem Phylogenetic Structural Equation Model
phyloseq Handling and analysis of high-throughput
microbiome census data
phyloseqGraphTest Graph-Based Permutation Tests for Microbiome
Data
phylosignal Exploring the Phylogenetic Signal in Continuous
Traits
phylosignalDB Explore Phylogenetic Signals Using
Distance-Based Methods
phylospatial Spatial Phylogenetic Analysis
phylotate Phylogenies with Annotations
phylotypr Classifying DNA Sequences to Taxonomic
Groupings
phylter Detect and Remove Outliers in Phylogenomics
Datasets
phymapnet Phylogeny-Guided Bayesian Microbial Network
Inference
phyr Model Based Phylogenetic Analysis
phyreg The Phylogenetic Regression of Grafen (1989)
phytoclass Estimate Chla Concentrations of Phytoplankton
Groups
phytools Phylogenetic Tools for Comparative Biology (and
Other Things)
piar Price Index Aggregation
picClip Paste Box Input for 'Shiny'
picR Predictive Information Criteria for Model
Selection
picante Integrating Phylogenies and Ecology
picasso Sparse Learning with Convex and Concave
Penalties
picker Pick Data Points from a Deck.gl Scatterplot
pickmax Split and Coalesce Duplicated Records
picohdr Read, Write and Manipulate High Dynamic Range
Images
picreg Variable Selection using the Pivotal
Information Criterion
pid Process Improvement using Data
piecemaker Tools for Preparing Text for Tokenizers
piecemeal Wrangle Large Simulation Studies
piecenorms Calculate a Piecewise Normalised Score Using
Class Intervals
piecepackr Board Game Graphics
piecewiseSEM Piecewise Structural Equation Modeling
piggyback Managing Larger Data on a GitHub Repository
piglet Program for Inferring Immunoglobulin Allele
Similarity Clusters and Genotypes
pii Search Data Frames for Personally Identifiable
Information
piiR Predictive Information Index ('PII')
pikchr R Wrapper for 'pikchr' (PIC) Diagram Language
pillar Coloured Formatting for Columns
pim Fit Probabilistic Index Models
pimeta Prediction Intervals for Random-Effects
Meta-Analysis
pinfsc50 Sequence ('FASTA'), Annotation ('GFF') and
Variants ('VCF') for 17 Samples of 'P.
Infestans" and 1 'P. Mirabilis'
pingers Identify, Ping, and Log Internet Provider
Connection Data
pingr Check if a Remote Computer is Up
pinnacle.data Market Odds Data from Pinnacle
pinochet Data About the Victims of the Pinochet Regime,
1973-1990
pinp 'pinp' is not 'PNAS'
pins Pin, Discover, and Share Resources
pinterestadsR Access to Pinterest Ads via the 'Windsor.ai'
API
pintervals Model Agnostic Prediction Intervals
pioneeR Productivity and Efficiency Analysis using DEA
pipeR Multi-Paradigm Pipeline Implementation
pipebind Flexible Binding for Complex Function
Evaluation with the Base R |> Pipe
pipefittr Convert Nested Functions to Pipes
pipeflow Fast Interactive Data Analysis Pipelines
pipeliner Machine Learning Pipelines for R
pipetime Tools to Time Pipe Operations
pipr Client for the Poverty and Inequality Platform
('PIP') API
piqp R Interface to Proximal Interior Point
Quadratic Programming Solver
piratings Calculate Pi Ratings for Teams Competing in
Sport Matches
pisaRT Small Example Response and Response Time Data
from PISA 2018
piton Parsing Expression Grammars in Rcpp
pivmet Pivotal Methods for Bayesian Relabelling and
k-Means Clustering
pivotaltrackR A Client for the 'Pivotal Tracker' API
pivotea Create Pivot Table Easily
pivottabler Create Pivot Tables
piwikproR Access 'Piwik Pro' Website Statistics
pixarfilms Pixar Films and Achievements
pixelclasser Classifies Image Pixels by Colour
pixelpuzzle Puzzle Game for the R Console
pixels Tools for Working with Image Pixels
pixiedust Tables so Beautifully Fine-Tuned You Will
Believe It's Magic
pixieweb Access PX-Web Statistical Data from R
pixmap Bitmap Images / Pixel Maps
pixr Access Brazilian Central Bank 'PIX' Open Data
'API'
pizzarr Slice into 'Zarr' Arrays
pk.unit.trans Achieve Numerical Conversion Between Units
Commonly Used in Pharmacokinetics
pk4adi PK for Anesthetic Depth Indicators
pkdata Creates Pharmacokinetic/Pharmacodynamic (PK/PD)
Data
pkgGraphR Graph the Relationship Between Functions in an
R Package
pkgKitten Create Simple Packages Which Do not Upset R
Package Checks
pkgbuild Find Tools Needed to Build R Packages
pkgcache Cache 'CRAN'-Like Metadata and R Packages
pkgcond Classed Error and Warning Conditions
pkgconfig Private Configuration for 'R' Packages
pkgdepR Statically Determine Function Dependencies
Between Packages
pkgdepends Package Dependency Resolution and Downloads
pkgdiff Identifies Package Differences
pkgdown Make Static HTML Documentation for a Package
pkgdown.offline Build 'pkgdown' Websites Offline
pkgfilecache Download and Manage Optional Package Data
pkggraph Explore the R Package Dependencies on the
Comprehensive R Archive Network (CRAN) Like
Repositories
pkglite Compact Package Representations
pkgload Simulate Package Installation and Attach
pkgmatch Find R Packages Matching Either Descriptions or
Other R Packages
pkgndep Analyze Dependency Heaviness of R Packages
pkgnet Get Network Representation of an R Package
pkgnews Retrieve R Package News Files
pkgsearch Search and Query CRAN R Packages
pkgsite Convert the Reference Pages into 'Quarto' Files
pkgstats Metrics of R Packages
pkgverse Build a Meta-Package Universe
pkmapr Pakistan Spatial Data Toolkit
pkmon Least-Squares Estimator under k-Monotony
Constraint for Discrete Functions
pkpd.Release Model Fitting and Simulation for Drug Release
Kinetics and PK/PD
pks Probabilistic Knowledge Structures
pksensi Global Sensitivity Analysis in Physiologically
Based Kinetic Modeling
plac A Pairwise Likelihood Augmented Cox Estimator
for Left-Truncated Data
placematchr Normalize and Match City Names to NUTS Regions
plainview Plot Raster Images Interactively on a Plain
HTML Canvas
plan Tools for Project Planning
planets Simple and Accessible Data from all Known
Planets
planr Tools for Supply Chain Management, Demand and
Supply Planning
planscorer Score Redistricting Plans with 'PlanScore'
plantTracker Extract Demographic and Competition Data from
Fine-Scale Maps
plantecophys Modelling and Analysis of Leaf Gas Exchange
Data
plantmix Genetic Study of Plant Mixtures
plantphysioR Fundamental Formulas for Plant Physiology
plasma Partial LeAst Squares for Multiomic Analysis
plasso Cross-Validated Post-Lasso
plater Read, Tidy, and Display Data from Microtiter
Plates
platetools Tools and Plots for Multi-Well Plates
platowork Data from a Test of the PlatoWork tDCS Headset
plattice Lattice Plot for Panel Data
plausibounds Plausible Bounds for Treatment Path Estimates
plavaan Penalized Estimation for Latent Variable Models
with 'lavaan'
player Play Games in the Console
pldamixture Post-Linkage Data Analysis Based on Mixture
Modelling
pleLMA Pseudo-Likelihood Estimation of
Log-Multiplicative Association Models
pleio Pleiotropy Test for Multiple Traits on a
Genetic Marker
pleioh2g Estimation of Pleiotropic Heritability from
Genome-Wide Association Studies (GWAS) Summary
Statistics
plfMA A GUI to View, Design and Export Various Graphs
of Data
plfm Probabilistic Latent Feature Analysis
plgp Particle Learning of Gaussian Processes
plgraphics User Oriented Plotting Functions
pliman Tools for Plant Image Analysis
plink IRT Separate Calibration Linking Methods
plinkFile 'PLINK' (and 'GCTA') File Helpers
plinkQC Genotype Quality Control with 'PLINK'
plm Linear Models for Panel Data
plmmr Penalized Linear Mixed Models for Correlated
Data
pln Polytomous Logit-Normit (Graded Logistic) Model
Estimation
plnr A Framework for Planning and Executing Analyses
plot.matrix Visualizes a Matrix as Heatmap
plot3D Plotting Multi-Dimensional Data
plot3Drgl Plotting Multi-Dimensional Data - Using 'rgl'
plot3logit Ternary Plots for Trinomial Regression Models
plot4fun Just Plot for Fun
plotGMM Tools for Visualizing Gaussian Mixture Models
plotHMM Plot Hidden Markov Models
plotMCMC MCMC Diagnostic Plots
plotMElm Plot Marginal Effects from Linear Models
plotROC Generate Useful ROC Curve Charts for Print and
Interactive Use
plotSEMM Graphing Nonlinear Relations Among Latent
Variables from Structural Equation Mixture
Models
plotannotate Annotate Plots
plotbb Grammar of Graphics for 'base' Plot
plotcli Command Line Interface Plotting
plotdap Easily Visualize Data from 'ERDDAP™' Servers
via the 'rerddap' Package
plotfunctions Various Functions to Facilitate Visualization
of Data and Analysis
plotlsirm Plot Toolkit for Latent Space Item Response
Models
plotluck 'ggplot2' Version of "I'm Feeling Lucky!"
plotly Create Interactive Web Graphics via 'plotly.js'
plotlyGeoAssets Render 'Plotly' Maps without an Internet
Connection
plotmm Tidy Tools for Visualizing Mixture Models
plotmo Plot a Model's Residuals, Response, and Partial
Dependence Plots
plotor Odds Ratio Tools for Logistic Regression
plotpc Plot Principal Component Histograms Around a
Scatter Plot
plotprotein Development of Visualization Tools for Protein
Sequence
plotrix Various Plotting Functions
plotrr Making Visual Exploratory Data Analysis with
Nested Data Easier
plotscale Scale Graphics Devices Using Plot Dimensions
plotscaper Explore Your Data with Interactive Figures
plotthis High-Level Plotting Built Upon 'ggplot2' and
Other Plotting Packages
plotwidgets Spider Plots, ROC Curves, Pie Charts and More
for Use in Other Plots
plpoisson Prediction Limits for Poisson Distribution
pls Partial Least Squares and Principal Component
Regression
plsRbeta Partial Least Squares Regression for Beta
Regression Models
plsRcox Partial Least Squares Regression for Cox Models
and Related Techniques
plsRglm Partial Least Squares Regression for
Generalized Linear Models
plsVarSel Variable Selection in Partial Least Squares
plsdepot Partial Least Squares (PLS) Data Analysis
Methods
plsdof Degrees of Freedom and Statistical Inference
for Partial Least Squares Regression
plsgenomics PLS Analyses for Genomics
plsmmLasso Variable Selection and Inference for Partial
Semiparametric Linear Mixed-Effects Model
plsmod Model Wrappers for Projection Methods
plsmselect Linear and Smooth Predictor Modelling with
Penalisation and Variable Selection
plspm Partial Least Squares Path Modeling (PLS-PM)
plssem Complex Partial Least Squares Structural
Equation Modeling
plu Dynamically Pluralize Phrases
plug Secure and Intuitive Access to 'Plug' Interface
plugdensity Plug-in Kernel Density Estimation
plumber An API Generator for R
plumber2 Easy and Powerful Web Servers
plumberDeploy Plumber Deployment
plumbertableau Turn 'Plumber' APIs into 'Tableau' Extensions
plumbr Mutable and Dynamic Data Models
plume A Simple Author Handler for Scientific Writing
plusCode2 Coordinates to 'Plus Code' Conversion Tool
pluscode Encoder for Google 'Pluscodes'
plutor Useful Functions for Visualization
ply Bitboard Chess Engine
plyr Tools for Splitting, Applying and Combining
Data
pm3 Propensity Score Matching for Unordered 3-Group
Data
pmartR Panomics Marketplace - Quality Control and
Statistical Analysis for Panomics Data
pmc Phylogenetic Monte Carlo
pmcalibration Calibration Curves for Clinical Prediction
Models
pmclust Parallel Model-Based Clustering using
Expectation-Gathering-Maximization Algorithm
for Finite Mixture Gaussian Model
pmd Paired Mass Distance Analysis for GC/LC-MS
Based Non-Targeted Analysis and Reactomics
Analysis
pmetar Processing METAR Weather Reports
pmev Calculates Earned Value for a Project Schedule
pminternal Internal Validation of Clinical Prediction
Models
pmlbr Interface to the Penn Machine Learning
Benchmarks Data Repository
pmledecon Deconvolution Density Estimation using
Penalized MLE
pmlsp Partial Maximum Likelihood Estimation of
Spatial Probit Models
pmml Generate PMML for Various Models
pmparser Create and Maintain a Relational Database of
Data from PubMed/MEDLINE
pmr Probability Models for Ranking Data
pmrm Progression Models for Repeated Measures
pmsampsize Sample Size for Development of a Prediction
Model
pmsesampling Sample Size Determination for Accurate
Predictive Linear Regression
pmultinom One-Sided Multinomial Probabilities
pmvalsampsize Sample Size for External Validation of a
Prediction Model
pmwg Particle Metropolis Within Gibbs
pmxNODE Application of NODEs in 'Monolix', 'NONMEM',
and 'nlmixr2'
pmxTools Pharmacometric and Pharmacokinetic Toolkit
pmxcode Create Pharmacometric Models
pmxcv Integration-Based Coefficients of Variation
pmxpartab Parameter Tables for PMx Analyses
pnd Parallel Numerical Derivatives, Gradients,
Jacobians, and Hessians of Arbitrary Accuracy
Order
png Read and write PNG images
poLCA Polytomous Variable Latent Class Analysis
poLCAParallel Polytomous Variable Latent Class Analysis
Parallel
pocrm Dose Finding in Drug Combination Phase I Trials
Using PO-CRM
poems Pattern-Oriented Ensemble Modeling System
pogit Bayesian Variable Selection for a
Poisson-Logistic Model
poibin The Poisson Binomial Distribution
poilog Poisson Lognormal and Bivariate Poisson
Lognormal Distribution
pointRes Analyzing Pointer Years and Components of
Resilience
pointblank Data Validation and Organization of Metadata
for Local and Remote Tables
pointdensityP Point Density for Geospatial Data
pointr Working Comfortably with Pointers and Shortcuts
to R Objects
poisDoubleSamp Confidence Intervals with Poisson Double
Sampling
poisFErobust Poisson Fixed Effects Robust
poisbinom A Faster Implementation of the Poisson-Binomial
Distribution
poismf Factorization of Sparse Counts Matrices Through
Poisson Likelihood
poisonfrogs Color Palettes Inspired by Neotropical Poison
Frogs
poisson.glm.mix Fit High Dimensional Mixtures of Poisson GLMs
poissoned Poisson Disk Sampling in 2D and 3D
poissonreg Model Wrappers for Poisson Regression
poissonsuperlearner Poisson Super Learner
poistweedie Poisson-Tweedie Exponential Family Models
pokemon Pokemon Data in English and Brazilian
Portuguese
polarisR Non-Linear Dimensionality Reduction
Visualization Tool
polaroid Create Hex Stickers with 'shiny'
polarzonoid Compute Maps and Properties of Polar Zonoids
poldis Analyse Political Texts
policytree Policy Learning via Doubly Robust Empirical
Welfare Maximization over Trees
polimetrics R Tools for Political Measures
poliscidata Datasets and Functions Featured in Pollock and
Edwards, an R Companion to Essentials of
Political Analysis, Second Edition
polish Polishing Content for 'Word' and 'PowerPoint'
polished Authentication and Hosting for 'shiny' Apps
polite Be Nice on the Web
politeness Detecting Politeness Features in Text
politicsR Calculating Political System Metrics
polle Policy Learning
pollen Analysis of Aerobiological Data
pollster Calculate Crosstab and Topline Tables of
Weighted Survey Data
polmineR Verbs and Nouns for Corpus Analysis
polspline Polynomial Spline Routines
polyCub Cubature over Polygonal Domains
polyMatrix Infrastructure for Manipulation Polynomial
Matrices
polyRAD Genotype Calling with Uncertainty from
Sequencing Data in Polyploids and Diploids
polySegratio Simulate and Test Marker Dosage for Dominant
Markers in Autopolyploids
polySegratioMM Bayesian Mixture Models for Marker Dosage in
Autopolyploids
polyaAeppli Implementation of the Polya-Aeppli Distribution
polyapost Simulating from the Polya Posterior
polyclip Polygon Clipping
polycor Polychoric and Polyserial Correlations
polyglotr Translate Text
polykde Polyspherical Kernel Density Estimation
polylabelr Find the Pole of Inaccessibility (Visual
Center) of a Polygon
polymapR Linkage Analysis in Outcrossing Polyploids
polymatching A Matching Algorithm for Designs with Multiple
Groups
polynom A Collection of Functions to Implement a Class
for Univariate Polynomial Manipulations
polypharmacy Calculate Several Polypharmacy Indicators
polypoly Helper Functions for Orthogonal Polynomials
polyqtlR QTL Analysis in Autopolyploid Bi-Parental F1
Populations
polyreg Polynomial Regression
polysat Tools for Polyploid Microsatellite Analysis
polywog Bootstrapped Basis Regression with Oracle Model
Selection
pomcheckr Graphical Check for Proportional Odds
Assumption
pomdp Infrastructure for Partially Observable Markov
Decision Processes (POMDP)
pomdpSolve Interface to 'pomdp-solve' for Partially
Observable Markov Decision Processes
pomodoro Predictive Power of Linear and Tree Modeling
pomp Statistical Inference for Partially Observed
Markov Processes
pompom Person-Oriented Method and Perturbation on the
Model
pompp Presence-Only for Marked Point Process
poobly Poolability Tests in Panel Data
pooh Partial Orders and Relations
pool Object Pooling
poolHelper Simulates Pooled Sequencing Genetic Data
poolVIM Gene-Based Association Tests using the Actual
Impurity Reduction (AIR) Variable Importance
pooledpeaks Genetic Analysis of Pooled Samples
poolfstat Computing f-Statistics and Building Admixture
Graphs Based on Allele Count or Pool-Seq Read
Count Data
poolr Methods for Pooling P-Values from (Dependent)
Tests
poorman A Poor Man's Dependency Free Recreation of
'dplyr'
pop A Flexible Syntax for Population Dynamic
Modelling
pop.lion Models for Simulating Lion Populations
pop.wolf Models for Simulating Wolf Populations
popEpi Functions for Epidemiological Analysis using
Population Data
popPCR Classify Digital PCR Droplets by Fitting
Fluorescence Populations
popPyramid Population Pyramids
popReconstruct Reconstruct Human Populations of the Recent
Past
popbayes Bayesian Model to Estimate Population Trends
from Counts Series
popbio Construction and Analysis of Matrix Population
Models
popdemo Demographic Modelling Using Projection Matrices
popgenr Accompaniment to Population Genetics with R: An
Introduction for Life Scientists
popkin Estimate Kinship and FST under Arbitrary
Population Structure
poppr Genetic Analysis of Populations with Mixed
Reproduction
popsom7 A Fast, User-Friendly Implementation of
Self-Organizing Maps (SOMs)
popstudy Applied Techniques to Demographic and Time
Series Analysis
poptrend Estimate Smooth and Linear Trends from
Population Count Survey Data
populR Population Downscaling Using Areal
Interpolation
population Models for Simulating Populations
populationPDXdesign Designing Population PDX Studies
poputils Demographic Analysis and Data Manipulation
porridge Ridge-Type Penalized Estimation of a Potpourri
of Models
port4me Get the Same, Personal, Free 'TCP' Port over
and over
portalr Create Useful Summaries of the Portal Data
portes Portmanteau Tests for Time Series Models
portfolio Analysing Equity Portfolios
portfolioBacktest Automated Backtesting of Portfolios over
Multiple Datasets
portion Extracting a Data Portion
portn Portfolio Analysis for Nature
portvine Vine Based (Un)Conditional Portfolio Risk
Measure Estimation
poset Analysis of Partially Ordered Data
poseticDataAnalysis Posetic Data Analysis
positron.tutorials Tutorials for Learning 'Positron' and for Using
AI
posologyr Individual Dose Optimization using Population
Pharmacokinetics
postHoc Tools for Post-Hoc Analysis
postcard Estimating Marginal Effects with Prognostic
Covariate Adjustment
postcards Create Beautiful, Simple Personal Websites
postdoc Minimal and Uncluttered Package Documentation
posterior Tools for Working with Posterior Distributions
postinfectious Estimating the Incubation Period Distribution
of Post-Infectious Syndrome
postlightmercury Parses Web Pages using Postlight Mercury
postlink Post-Linkage Data Analysis
postlogic Infix and Postfix Logic Operators
postpack Utilities for Processing Posterior Samples
Stored in 'mcmc.lists'
potential Implementation of the Potential Model
potentiomap Build Potentiometric Surfaces and Flow Arrows
poth Precision of Treatment Hierarchy (POTH)
potions Easy Options Management
potools Tools for Internationalization and Portability
in R Packages
potts Markov Chain Monte Carlo for Potts Models
pould Phased or Unphased Linkage Disequilibrium
pow.int Binary Exponentiation
powRICLPM Perform Power Analysis for the RI-CLPM and
STARTS Model
powdist Power and Reversal Power Distributions
poweRbal Phylogenetic Tree Models and the Power of Tree
Shape Statistics
poweRlaw Analysis of Heavy Tailed Distributions
power.nb Power and Sample Size Calculation for
Differential Abundance Microbiome Studies
power.transform Location and Scale Invariant Power
Transformations
power4mome Power Analysis for Moderation and Mediation
powerCompRisk Power Analysis Tool for Joint Testing Hazards
with Competing Risks Data
powerEQTL Power and Sample Size Calculation for Bulk
Tissue and Single-Cell eQTL Analysis
powerGWASinteraction Power Calculations for GxE and GxG Interactions
for GWAS
powerHE Power and Sample Size Calculations with
Hierarchical Endpoints
powerLATE Generalized Power Analysis for LATE
powerMediation Power/Sample Size Calculation for Mediation
Analysis
powerNLSEM Simulation-Based Power Estimation (MSPE) for
Nonlinear SEM
powerPLS Power Analysis for PLS Classification
powerSurvEpi Power and Sample Size Calculation for Survival
Analysis of Epidemiological Studies
powerbiR An Interface to the 'Power BI REST APIs'
powerbrmsINLA Bayesian Power Analysis Using 'brms' and 'INLA'
powerbydesign Power Estimates for ANOVA Designs
powergrid Power Analysis Across a Grid of Assumptions
powerindexR Measuring the Power in Voting Systems
powerjoin Extensions of 'dplyr' and 'fuzzyjoin' Join
Functions
powerly Sample Size Analysis for Psychological Networks
and More
powerpkg Power Analyses for the Affected Sib Pair and
the TDT Design
powerprior Conjugate Power Priors for Bayesian Analysis of
Normal Data
powertools Power and Sample Size Tools
ppRank Classification of Algorithms
ppRep Analysis of Replication Studies using Power
Priors
ppcSpatial Spatial Analysis of Pakistan Population Census
ppcc Probability Plot Correlation Coefficient Test
ppclust Probabilistic and Possibilistic Cluster
Analysis
ppcor Partial and Semi-Partial (Part) Correlation
ppdiag Diagnosis and Visualizations Tools for Temporal
Point Processes
ppendemic A Glimpse at the Diversity of Peru's Endemic
Plants
ppgam Generalised Additive Point Process Models
ppgm PaleoPhyloGeographic Modeling of Climate Niches
and Species Distributions
ppgmmga Projection Pursuit Based on Gaussian Mixtures
and Evolutionary Algorithms
ppitables Lookup Tables to Generate Poverty Likelihoods
and Rates using the Poverty Probability Index
(PPI)
ppks Permutation Based Paired Kolmogorov-Smirnov
Test
pplot Chronological and Ordered p-Plots for Empirical
Data
ppls Penalized Partial Least Squares
ppmHR Privacy-Protecting Hazard Ratio Estimation in
Distributed Data Networks
ppmSuite A Collection of Models that Employ Product
Partition Distributions as a Prior on
Partitions
ppmf Read Census Privacy Protected Microdata Files
ppmlasso Point Process Models with LASSO-Type Penalties
pprof Modeling, Standardization and Testing for
Provider Profiling
pps PPS Sampling
ppsbm Clustering in Longitudinal Networks
ppseq Design Clinical Trials using Sequential
Predictive Probability Monitoring
ppsr Predictive Power Score
ppwdeming Precision Profile Weighted Deming Regression
ppweibull Piecewise Lifetime Models
pql A Partitioned Quasi-Likelihood for Distributed
Statistical Inference
pqrBayes Bayesian Penalized Quantile Regression
pqrfe Penalized Quantile Regression with Fixed
Effects
prWarp Warping Landmark Configurations
praatpicture 'Praat Picture' Style Plots of Acoustic Data
prabclus Functions for Clustering and Testing of
Presence-Absence, Abundance and Multilocus
Genetic Data
pracma Practical Numerical Math Functions
pracpac Practical 'R' Packaging in 'Docker'
practicalSigni Practical Significance Ranking of Regressors
and Exact t Density
prais Prais-Winsten Estimator for AR(1) Serial
Correlation
praise Praise Users
prakriti Color Palettes Inspired by India's Natural
Landscapes
praznik Tools for Information-Based Feature Selection
and Scoring
prcbench Testing Workbench for Precision-Recall Curves
prcr Person-Centered Analysis
pre Prediction Rule Ensembles
precisePlacement Suite of Functions to Help Get Plot Elements
Exactly Where You Want Them
precisely Estimate Sample Size Based on Precision Rather
than Power
precmed Precision Medicine
precommit Pre-Commit Hooks
precrec Calculate Accurate Precision-Recall and ROC
(Receiver Operator Characteristics) Curves
precviasBR Spatial Data of Road Precariousness in Brazil
predReliability Estimates Reliability of Individual Supervised
Learning Predictions
predRupdate Prediction Model Validation and Updating
predfairness Discrimination Mitigation for Machine Learning
Models
predhy Genomic Prediction of Hybrid Performance
predhy.GUI Genomic Prediction of Hybrid Performance with
Graphical User Interface
predict3d Draw Three Dimensional Predict Plot Using
Package 'rgl'
predictMe Visualize Individual Prediction Performance
predictNMB Evaluate Clinical Prediction Models by Net
Monetary Benefit
prediction Tidy, Type-Safe 'prediction()' Methods
predictionInterval Prediction Interval Functions for Assessing
Replication Study Results
predictmeans Predicted Means for Linear and Semiparametric
Models
predictoR Predictive Data Analysis System
predictrace Predict the Race and Gender of a Given Name
Using Census and Social Security Administration
Data
predicts Spatial Prediction Tools
predictset Conformal Prediction and Uncertainty
Quantification
predictsr Access the 'PREDICTS' Biodiversity Database
predieval Assessing Performance of Prediction Models for
Predicting Patient-Level Treatment Benefit
predint Prediction Intervals
predtools Prediction Model Tools
predtoolsTS Time Series Prediction Tools
pref Preference Voting with Explanatory Graphics
prefeR R Package for Pairwise Preference Elicitation
preference 2-Stage Preference Trial Design and Analysis
prefio Structures for Preference Data
prefmod Utilities to Fit Paired Comparison Models for
Preferences
prefviz Visualizes Preferential Data in One and More
Contests
pregnancy Calculate and Track Dates and Medications
During Pregnancy
prenoms Names Given to Babies in Quebec Between 1980
and 2020
prepdat Preparing Experimental Data for Statistical
Analysis
prepkit Data Normalization and Transformation
prepost Non-Parametric Bounds and Gibbs Sampler for
Assessing Priming and Post-Treatment Bias
prepplot Prepare Figure Region for Base Graphics
preprocessCore A collection of pre-processing functions
preputils Utilities for Preparation of Data Analysis
prereg R Markdown Templates to Preregister Scientific
Studies
preregr Specify (Pre)Registrations and Export Them
Human- And Machine-Readably
presens Interface for PreSens Fiber Optic Data
presenter Present Data with Style
presentes Registry of Victims of State Terrorism in
Argentina
presize Precision Based Sample Size Calculation
presmTP Methods for Transition Probabilities
presmoothedTP Presmoothed Landmark Aalen-Johansen Estimator
of Transition Probabilities for Complex
Multi-State Models
pressuRe Imports, Processes, and Visualizes
Biomechanical Pressure Data
pretest A Novel Approach to Predictive Accuracy Testing
in Nested Environments
pretestcad Pretest Probability for Coronary Artery Disease
prettyB Pretty Base Graphics
prettyGraphs Publication-Quality Graphics
prettyPanelMatch 'ggplot2'-Based Visualization for 'PanelMatch'
(Imai, Kim, Wang 2023) Results
prettycode Pretty Print R Code in the Terminal
prettydoc Creating Pretty Documents from R Markdown
prettymapr Scale Bar, North Arrow, and Pretty Margins in R
prettyunits Pretty, Human Readable Formatting of Quantities
prevR Estimating Regional Trends of a Prevalence from
a DHS and Similar Surveys
prevalence Tools for Prevalence Assessment Studies
preventr An Implementation of the PREVENT and Pooled
Cohort Equations
previsionio 'Prevision.io' R SDK
prevtoinc Prevalence to Incidence Calculations for
Point-Prevalence Studies in a Nosocomial
Setting
priceR Economics and Pricing Tools
pricelevels Spatial Price Level Comparisons
pricesensitivitymeter Van Westendorp Price Sensitivity Meter Analysis
prider Multiplexed Primer Design by Linear Set
Coverage Approximation
pridit Composite Scoring via Principal Component
Analysis of Ridit Scores
prim Patient Rule Induction Method (PRIM)
primarycensored Primary Event Censored Distributions
primate Tools and Methods for Primatological Data
Science
primePCA Projected Refinement for Imputation of Missing
Entries in PCA
primefactr Use Prime Factorization for Computations
primer Functions and Data for the Book, a Primer of
Ecology with R
primerTree Visually Assessing the Specificity and
Informativeness of Primer Pairs
primes Fast Functions for Prime Numbers
princurve Fit a Principal Curve in Arbitrary Dimension
prinsurf Constructs Principal Surfaces
printify Custom Formatted Console Messages with Timing
Support
printr Automatically Print R Objects to Appropriate
Formats According to the 'knitr' Output Format
printtree Print Directory Trees for R Projects and
Folders
prinvars Principal Variables
prior3D 3D Prioritization Algorithm
priorCON Graph Community Detection Methods into
Systematic Conservation Planning
prioriactions Multi-Action Conservation Planning
prioritizr Systematic Conservation Prioritization in R
prioritizrdata Conservation Planning Datasets
priorityelasticnet Comprehensive Analysis of Multi-Omics Data
Using an Offset-Based Method
prioritylasso Analyzing Multiple Omics Data with an Offset
Approach
priorsense Prior Diagnostics and Sensitivity Analysis
prism Access Data from the Oregon State Prism Climate
Project
prismadiagramR Creates a Prisma Diagram using 'DiagrammeR'
prismatic Color Manipulation Tools
prismjs Server-Side Syntax Highlighting
prithulib Perform Random Experiments
privacyR Privacy-Preserving Data Anonymization
prmisc Miscellaneous Printing of Numeric and
Statistical Output in R Markdown and Quarto
Documents
prnsamplr Permanent Random Number Sampling
pro Point-Process Response Model for Optogenetics
proPubBills 'ProPublica' U.S. Congress Bills API Wrapper
probably Tools for Post-Processing Predicted Values
probaverse Install and Load the 'probaverse' Packages
probe Sparse High-Dimensional Linear Regression with
PROBE
probout Unsupervised Multivariate Outlier Probabilities
for Large Datasets
probs Elementary Probability on Finite Sample Spaces
probstats4econ Companion Package to Probability and Statistics
for Economics and Business
proccalibrad Extraction of Bands from MODIS Calibrated
Radiances MOD02 NRT
proceduralnames Several Methods for Procedural Name Generation
processcheckR Rule-Based Conformance Checking of Business
Process Event Data
processmapR Construct Process Maps Using Event Data
processmonitR Building Process Monitoring Dashboards
processpredictR Process Prediction
processx Execute and Control System Processes
proclhmm Latent Hidden Markov Models for Response
Process Data
procmaps Portable Address Space Mapping
procs Recreates Some 'SAS®' Procedures in 'R'
prodest Production Function Estimation
prodigenr Research Project Directory Generator
prodlim Product-Limit Estimation for Censored Event
History Analysis
productivity Indices of Productivity Using Data Envelopment
Analysis (DEA)
productplots Product Plots for R
profExtrema Compute and Visualize Profile Extrema Functions
proffer Profile R Code and Visualize with 'Pprof'
profile Read, Manipulate, and Write Profiler Data
profileCI Profiling a Log-Likelihood to Calculate
Confidence Intervals
profileModel Profiling Inference Functions for Various Model
Classes
profileR Profile Analysis of Multivariate Data in R
profmem Simple Memory Profiling for R
profoc Probabilistic Forecast Combination Using CRPS
Learning
profr An Alternative Display for Profiling
Information
profrep Profile Repeatability
proftools Profile Output Processing Tools for R
profvis Interactive Visualizations for Profiling R Code
progress Terminal Progress Bars
progressify Progress Reporting of Common Functions via One
Magic Function
progressr An Inclusive, Unifying API for Progress Updates
proj4 A simple interface to the PROJ.4 cartographic
projections library
projectLSA Shiny Application for Latent Structure Analysis
with a Graphical User Interface
projections Project Future Case Incidence
projects A Project Infrastructure for Researchers
projmgr Task Tracking and Project Management with
GitHub
projoint Conjoint Analysis with Reliability Correction
and Visualization
projpred Projection Predictive Feature Selection
prolific.api A User-Friendly Interface for Accessing the
Prolific API
prolsirm Procrustes Matching for Latent Space Item
Response Model
promethee123 PROMETHEE I, II, and III Methods
promises Abstractions for Promise-Based Asynchronous
Programming
promor Proteomics Data Analysis and Modeling Tools
promote Client for the 'Alteryx Promote' API
promotionImpact Analysis & Measurement of Promotion
Effectiveness
prompt Dynamic 'R' Prompt
prompter Add Tooltips in 'Shiny' Apps with 'Hint.css'
promptr Format and Complete Few-Shot LLM Prompts
promr Prometheus 'PromQL' Query Client for 'R'
prop.comb.RR Analyzing Combination of Proportions and
Relative Risk
propOverlap Feature (gene) selection based on the
Proportional Overlapping Scores
propagate Propagation of Uncertainty
propensity A Toolkit for Calculating and Working with
Propensity Scores
propertee Standardization-Based Effect Estimation with
Optional Prior Covariance Adjustment
properties Parse 'Java' Properties Files for 'R Service
Bus' Applications
prophet Automatic Forecasting Procedure
proporz Proportional Apportionment
prospectr Miscellaneous Functions for Processing and
Sample Selection of Spectroscopic Data
protHMM Protein Feature Extraction from Profile Hidden
Markov Models
protViz Visualizing and Analyzing Mass Spectrometry
Related Data in Proteomics
protag Search Tagged Peptides & Draw Highlighted Mass
Spectra
protein8k Perform Analysis and Create Visualizations of
Proteins
proteomicsCV Calculates the Percentage CV for Mass
Spectrometry-Based Proteomics Data
proteus Multiform Seq2Seq Model for Time-Feature
Analysis
proto Prototype Object-Based Programming
protoclust Hierarchical Clustering with Prototypes
protolite Highly Optimized Protocol Buffer Serializers
proton The Proton Game
protoshiny Interactive Dendrograms for Visualizing
Hierarchical Clusters with Prototypes
prototest Inference on Prototypes from Clusters of
Features
protr Generating Various Numerical Representation
Schemes for Protein Sequences
protti Bottom-Up Proteomics and LiP-MS Quality Control
and Data Analysis Tools
proustr Tools for Natural Language Processing in French
provDebugR A Time-Travelling Debugger
provExplainR Compare Provenance Collections to Explain
Changed Script Outputs
provGraphR Creates Adjacency Matrices for Lineage Searches
provParseR Pulls Information from Prov.Json Files
provSummarizeR Summarizes Provenance Related to Inputs and
Outputs of a Script or Console Commands
provTraceR Uses Provenance to Trace File Lineage for One
or more R Scripts
provViz Provenance Visualizer
provenance Statistical Toolbox for Sedimentary Provenance
Analysis
proverbs Print a Daily Bible Proverb to Console
provolleyballr Extract Data from US Women's Professional
Volleyball Websites
proxirr Alpha, Beta and Gamma Proximity to
Irreplaceability
proxy Distance and Similarity Measures
proxyC Computes Proximity in Large Sparse Matrices
prozor Minimal Protein Set Explaining Peptide Spectrum
Matches
prqlr R Bindings for the 'prqlc' Rust Library
prrd Parallel Runs of Reverse Depends
prt Tabular Data Backed by Partitioned 'fst' Files
ps List, Query, Manipulate System Processes
psBayesborrow Bayesian Information Borrowing with Propensity
Score Matching
psHarmonize Creates a Harmonized Dataset Based on a Set of
Instructions
psSubpathway Flexible Identification of Phenotype-Specific
Subpathways
psbcGroup Penalized Parametric and Semiparametric
Bayesian Survival Models with Shrinkage and
Grouping Priors
psbcSpeedUp Penalized Semiparametric Bayesian Cox Models
psborrow Bayesian Dynamic Borrowing with Propensity
Score
psborrow2 Bayesian Dynamic Borrowing Analysis and
Simulation
psc Personalised Synthetic Controls
pscDesign Study Design for Personalised Synthetic
Controls
pscl Political Science Computational Laboratory
pscore Standardizing Physiological Composite Risk
Endpoints
psd Adaptive, Sine-Multitaper Power Spectral
Density and Cross Spectrum Estimation
psdr Use Time Series to Generate and Compare Power
Spectral Density
pseudo Computes Pseudo-Observations for Modeling
pseudoCure A Pseudo-Observations Approach for Analyzing
Survival Data with a Cure Fraction
pseudobibeR Aggregate Counts of Linguistic Features
pseudohouseholds Generate Pseudohouseholds on Road Networks in
Regions
pseudorank Pseudo-Ranks
pseval Methods for Evaluating Principal Surrogates of
Treatment Response
psfmi Prediction Model Pooling, Selection and
Performance Evaluation Across Multiply Imputed
Datasets
psgc Philippine Standard Geographic Code
psgp Projected Spatial Gaussian Process Methods
psica Decision Tree Analysis for Probabilistic
Subgroup Identification with Multiple
Treatments
psidR Build Panel Data Sets from PSID Raw Data
psidread Streamline Building Panel Data from Panel Study
of Income Dynamics ('PSID') Raw Files
psm3mkv Evaluate Partitioned Survival and State
Transition Models
psme Penalized Splines Mixed-Effects Models
psmineR Performance Spectrum Miner for Event Data
pso Particle Swarm Optimization
psoptim Particle Swarm Optimization
psp Parameter Space Partitioning MCMC for Global
Model Evaluation
pspatreg Spatial and Spatio-Temporal Semiparametric
Regression Models with Spatial Lags
pspearman Spearman's Rank Correlation Test
pspline Penalized Smoothing Splines
psqn Partially Separable Quasi-Newton
psre Presenting Statistical Results Effectively
psrwe PS-Integrated Methods for Incorporating
Real-World Evidence in Clinical Studies
pssmooth Flexible and Efficient Evaluation of Principal
Surrogates/Treatment Effect Modifiers
psvd Eigendecomposition, Singular-Values and the
Power Method
psvmSDR Unified Principal Sufficient Dimension
Reduction Package
psy Various Procedures Used in Psychometrics
psycCleaning Data Cleaning for Psychological Analyses
psych Procedures for Psychological, Psychometric, and
Personality Research
psychReport Reproducible Reports in Psychology
psychTools Tools to Accompany the 'psych' Package for
Psychological Research
psychmeta Psychometric Meta-Analysis Toolkit
psycho Efficient and Publishing-Oriented Workflow for
Psychological Science
psychometric Applied Psychometric Theory
psychomix Psychometric Mixture Models
psychonetrics Structural Equation Modeling and Confirmatory
Network Analysis
psychotools Psychometric Modeling Infrastructure
psychotree Recursive Partitioning Based on Psychometric
Models
psychrolib Psychrometric Properties of Moist and Dry Air
psymetadata Open Datasets from Meta-Analyses in Psychology
Research
psyntur Helper Tools for Teaching Statistical Data
Analysis
psyphy Functions for Analyzing Psychophysical Data in
R
psyverse Decentralized Unequivocality in Psychological
Science
ptable Generation of Perturbation Tables for the
Cell-Key Method
ptetools Panel Treatment Effects Tools
ptinpoly Point-in-Polyhedron Test (2D and 3D)
ptm Analyses of Protein Post-Translational
Modifications
ptmixed Poisson-Tweedie Generalized Linear Mixed Model
ptools Tools for Poisson Data
pttstability Particle-Takens Stability
ptvalue Working with Precision Teaching Values
ptvapi Access the 'Public Transport Victoria'
Timetable API
ptw Parametric Time Warping
ptwikiwords Words Used in Portuguese Wikipedia
ptycho Bayesian Variable Selection with Hierarchical
Priors
pubchem.bio Biologically Informed Metabolomic Libraries
from 'PubChem'
pubh A Toolbox for Public Health and Epidemiology
public.ctn0094data De-Identified Data from CTN-0094
public.ctn0094extra Helper Files for the CTN-0094 Relational
Database
pubmed.mineR Text Mining of PubMed Abstracts
pubmedR Gathering Metadata About Publications, Grants,
Clinical Trials from 'PubMed' Database
pubmedtk 'Pubmed' Toolkit
pubrplot Publication-Ready Plots and Statistical
Visualizations
pudu C++ Tools for Cleaning Strings
puff Simulate and Visualize the Gaussian Puff
Forward Atmospheric Model
pullword R Interface to Pullword Service
puls Partitioning Using Local Subregions
pulsar Parallel Utilities for Lambda Selection along a
Regularization Path
pulso Load Microdata from Colombia's 'GEIH' ('DANE')
pumBayes Bayesian Estimation of Probit Unfolding Models
for Binary Preference Data
pumilioR Pumilio in R
puniform Meta-Analysis Methods Correcting for
Publication Bias
punycoder Unicode and Punycode Domain Name Processing
puremoe Pubmed Unified REtrieval for Multi-Output
Exploration
pureseqtmr Predict Transmembrane Protein Topology
purge Purge Training Data from Models
purgeR Inbreeding-Purging Estimation in Pedigreed
Populations
purging Simple Method for Purging Mediation Effects
among Independent Variables
purrr Functional Programming Tools
purrrlyr Tools at the Intersection of 'purrr' and
'dplyr'
pushbar Create Sliders for 'Shiny'
pushoverr Send Push Notifications using 'Pushover'
putior "Register In- and Outputs for Workflow
Visualization"
puzzle Assembling Data Sets for Non-Linear Mixed
Effects Modeling
pvEBayes Empirical Bayes Methods for Pharmacovigilance
pvLRT Likelihood Ratio Test-Based Approaches to
Pharmacovigilance
pvaluefunctions Creates and Plots P-Value Functions, S-Value
Functions, Confidence Distributions and
Confidence Densities
pvar Calculation and Application of p-Variation
pvarife Panel VAR Models with Interactive Fixed Effects
pvars VAR Modeling for Heterogeneous Panels
pvca Principal Variance Component Analysis (PVCA)
pvclass P-Values for Classification
pvclust Hierarchical Clustering with P-Values via
Multiscale Bootstrap Resampling
pvcurveanalysis Analysis of Pressure Volume Curves
pvda Disproportionality Functions for
Pharmacovigilance
pvldcurve Simplifies the Analysis of Pressure Volume and
Leaf Drying Curves
pwSEM Piecewise Structural Equation Modelling
pwalign Perform pairwise sequence alignments
pwlapprox2d Approximates Univariate Continuous Functions
Through Piecewise Linear Regression
pwlmm PWIGLS for Two-Level Multivariate and
Multilevel Linear Models
pwr Basic Functions for Power Analysis
pwr2ppl Power Analyses for Common Designs (Power to the
People)
pwr4exp Power Analysis for Research Experiments
pwrAB Power Analysis for AB Testing
pwrFDR FDR Power
pwrRasch Statistical Power Simulation for Testing the
Rasch Model
pwranova Power Analysis of Flexible ANOVA Designs and
Related Tests
pwrss Statistical Power and Sample Size Calculation
Tools
pwt Penn World Table (Versions 5.6, 6.x, 7.x)
pwt10 Penn World Table (Version 10.x)
pwt8 Penn World Table (Version 8.x)
pwt9 Penn World Table (Version 9.x)
pxR PC-Axis with R
pxmake Make PX-Files in R
pxweb R Interface to PXWEB APIs
pyMTurkR A Client for the 'MTurk' Requester API
pycno Pycnophylactic Interpolation
pye Penalized Youden Index Estimator
pyinit Pena-Yohai Initial Estimator for Robust
S-Regression
pylintR Lint 'Python' Files with a R Command or a
'RStudio' Addin
pyramid Draw Population Pyramid
pysd2r API to 'Python' Library 'pysd'
pysparklyr Provides a 'PySpark' Back-End for the
'sparklyr' Package
pzfx Read and Write 'GraphPad Prism' Files
qCBA Postprocessing of Rule Classification Models
Learnt on Quantized Data
qDEA Quantile Data Envelopment Analysis
qGaussian The q-Gaussian Distribution
qMRI Methods for Quantitative Magnetic Resonance
Imaging ('qMRI')
qPCRhelper qPCR Ct Values to Expression Values
qPCRtools Tools for qPCR
qPRAentry Quantitative Pest Risk Assessment at the Entry
Step
qVarSel Select Variables for Optimal Clustering
qad Quantification of Asymmetric Dependence
qadf Quantile Autoregressive Distributed Lag Unit
Root Test
qap Heuristics for the Quadratic Assignment Problem
(QAP)
qape Quantile of Absolute Prediction Errors
qarPI Prediction Intervals for Quantile
Autoregression
qardlr Quantile Autoregressive Distributed Lag Model
qatarcars Data on Cars in Qatar
qbinplots Quantile Binned Plots
qbld Quantile Regression for Binary Longitudinal
Data
qboxplot Quantile-Based Boxplot
qbr Access the 'Quickbase' JSON API
qbrms Quick Bayesian Regression Models Using 'INLA'
with 'brms' Syntax
qcQpcr Histone ChIP-Seq qPCR Analyzer
qcaERT Enhanced Robustness Tests for Qualitative
Comparative Analysis
qcapower Estimate Power and Required Sample Size in QCA
qcauchyreg Quantile Regression Quasi-Cauchy
qcc Quality Control Charts
qccrs Quality Control Charts under Repetitive
Sampling
qch Query Composite Hypotheses
qcluster Clustering via Quadratic Scoring
qcpm Quantile Composite Path Modeling
qcr Quality Control Review
qcrlscR Quality Control–based Robust LOESS Signal
Correction
qcv Quantifying Construct Validity
qdap Bridging the Gap Between Qualitative Data and
Quantitative Analysis
qdapDictionaries Dictionaries and Word Lists for the 'qdap'
Package
qdapRegex Regular Expression Removal, Extraction, and
Replacement Tools
qdapTools Tools for the 'qdap' Package
qdm Fitting a Quadrilateral Dissimilarity Model to
Same-Different Judgments
qeML Quick and Easy Machine Learning Tools
qfa Quantile-Frequency Analysis (QFA) of Time
Series and Spline Quantile Regression (SQR)
qfratio Moments and Distributions of Ratios of
Quadratic Forms Using Recursion
qgam Smooth Additive Quantile Regression Models
qgarch Quadratic GARCH-in-Mean Models for Volatility
Feedback
qgcomp Quantile G-Computation
qgcompint Quantile G-Computation Extensions for Effect
Measure Modification
qgg Statistical Tools for Quantitative Genetic
Analyses
qgisprocess Use 'QGIS' Processing Algorithms
qgraph Graph Plotting Methods, Psychometric Data
Visualization and Graphical Model Estimation
qgshiny A 'shiny' Application for Active Learning
Instruction in Introductory Quantitative
Genetics
qicharts Quality Improvement Charts
qicharts2 Quality Improvement Charts
qif Quadratic Inference Function
qiitr R Interface to Qiita API
qkiosk 'QUANTkiosk' API Client
qlcData Processing Data for Quantitative Language
Comparison
qlcMatrix Utility Sparse Matrix Functions for
Quantitative Language Comparison
qlcal R Bindings to the Calendaring Functionality of
'QuantLib'
qlifetable Managing and Building of Quarterly Life Tables
qmap Statistical Transformations for Post-Processing
Climate Model Output
qmd Quantification of Multivariate Dependence
qmethod Analysis of Subjective Perspectives Using Q
Methodology
qmj Quality Scores for the Russell 3000
qmrparser Parser Combinator in R
qmvs Queueing Model of Visual Search
qoi Read and Write QOI Images
qol Powerful 'SAS' Inspired Concepts for more
Efficient Bigger Outputs
qountstat Statistical Analysis of Count Data and Quantal
Data
qpNCA Noncompartmental Pharmacokinetic Analysis by
qPharmetra
qpcR Modelling and Analysis of Real-Time PCR Data
qpdf Split, Combine and Compress PDF Files
qpgraph Estimation of Genetic and Molecular Regulatory
Networks from High-Throughput Genomics Data
qqconf Creates Simultaneous Testing Bands for QQ-Plots
qqkrls Quantile-on-Quantile Kernel Regularized Least
Squares
qqman Q-Q and Manhattan Plots for GWAS Data
qqplotr Quantile-Quantile Plot Extensions for 'ggplot2'
qqtest Self Calibrating Quantile-Quantile Plots for
Visual Testing
qqvases Animated Normal Quantile-Quantile Plots
qrLMM Quantile Regression for Linear Mixed-Effects
Models
qrNLMM Quantile Regression for Nonlinear Mixed-Effects
Models
qra Quantal Response Analysis for Dose-Mortality
Data
qrcm Quantile Regression Coefficients Modeling
qrcmNP Nonlinear and Penalized Quantile Regression
Coefficients Modeling
qrcode Generate QRcodes with R
qrencoder Quick Response Code (QR Code) / Matrix Barcode
Creator
qreport Statistical Reporting with 'Quarto'
qrjoint Joint Estimation in Linear Quantile Regression
qrlabelr Generate Machine- And Human-Readable Plot
Labels for Experiments
qrmdata Data Sets for Quantitative Risk Management
Practice
qrmtools Tools for Quantitative Risk Management
qrng (Randomized) Quasi-Random Number Generators
qrnn Quantile Regression Neural Network
qryflow Execute Multi-Step 'SQL' Workflows
qs2 Efficient Serialization of R Objects
qshap Fast Calculation of Feature Contributions in
Boosting Trees
qsimulatR A Quantum Computer Simulator
qslice Implementations of Various Slice Samplers
qsmooth Smooth quantile normalization
qsplines Quaternions Splines
qst Store Tables in SQL Database
qsub Running Commands Remotely on 'Gridengine'
Clusters
qtbi Quantum Toxic Burden Index
qte Quantile Treatment Effects
qtkit Quantitative Text Kit
qtl Tools for Analyzing QTL Experiments
qtl2 Quantitative Trait Locus Mapping in
Experimental Crosses
qtl2convert Convert Data among QTL Mapping Packages
qtl2fst Database Storage of Genotype Probabilities for
QTL Mapping
qtl2ggplot Data Visualization for QTL Experiments
qtl2pattern Pattern Support for 'qtl2' Package
qtl2pleio Testing Pleiotropy in Multiparental Populations
qtlDesign Design of QTL (Quantitative Trait Locus)
Experiments
qtlbook Datasets for the R/qtl Book
qtlc Densitometric Analysis of Thin-Layer
Chromatography Plates
qtlcharts Interactive Graphics for QTL Experiments
qtlhot Inference for QTL Hotspots
qtlnet Causal Inference of QTL Networks
qtwAcademic 'Quarto' Website Templates for Academics
quRan Complete Text of the Qur'an
quadVAR Quadratic Vector Autoregression
quadcleanR Cleanup and Visualization of Quadrat Data
quadform Efficient Evaluation of Quadratic Forms
quadkeyr Generate Raster Images from QuadKey-Identified
Datasets
quadmatrix Solving Quadratic Matrix Equations
quadmesh Quadrangle Mesh
quadprog Functions to Solve Quadratic Programming
Problems
quadprogXT Quadratic Programming with Absolute Value
Constraints
quadraticSD Visualizing the SD using a Quadratic Curve
quadrupen Sparse and Group Sparse Linear Models
quak Query 'Azure Data Lake Storage Gen2' with
'DuckDB'
qualV Qualitative Validation Methods
qualitycontrol Unified Framework for Data Quality Control
quallmer Qualitative Analysis with Large Language Models
quallmer.app Interactive Validation App for 'quallmer'
qualmap Opinionated Approach for Digitizing
Semi-Structured Qualitative GIS Data
qualpalr Automatic Generation of Qualitative Color
Palettes
qualtRics Download 'Qualtrics' Survey Data
qualvar Implements Indices of Qualitative Variation
Proposed by Wilcox (1973)
quantCurves Estimate Quantiles Curves
quantbayes Bayesian Quantification of Evidence Sufficiency
quantdates Manipulate Dates for Finance
quantdr Dimension Reduction Techniques for Conditional
Quantiles
quanteda Quantitative Analysis of Textual Data
quanteda.textmodels Scaling Models and Classifiers for Textual Data
quanteda.textplots Plots for the Quantitative Analysis of Textual
Data
quanteda.textstats Textual Statistics for the Quantitative
Analysis of Textual Data
quanteda.tidy 'tidyverse' Extensions for 'quanteda'
quantification Quantification of Qualitative Survey Data
quantileDA Quantile Classifier
quantilogram Cross-Quantilogram
quantities Quantity Calculus for R Vectors
quantkriging Quantile Kriging for Stochastic Simulations
with Replication
quantmod Quantitative Financial Modelling Framework
quantreg Quantile Regression
quantreg.nonpar Nonparametric Series Quantile Regression
quantregForest Quantile Regression Forests
quantregGrowth Non-Crossing Additive Regression Quantiles and
Non-Parametric Growth Charts
quantregRanger Quantile Regression Forests for 'ranger'
quantsig Sigmoidal Quantile Function Estimator
quantsmooth Quantile smoothing and genomic visualization of
array data
quantspec Quantile-Based Spectral Analysis of Time Series
quaqcr Quick ATAC-Seq QC
quarks Simple Methods for Calculating and Backtesting
Value at Risk and Expected Shortfall
quarrint Interaction Prediction Between Groundwater and
Quarry Extension Using Discrete Choice Models
and Artificial Neural Networks
quartabs Dynamically Generate Tabset Panels in 'Quarto'
HTML Documents
quartets Datasets to Help Teach Statistics
quartify Convert R Scripts to 'Quarto' Markdown
Documents
quarto R Interface to 'Quarto' Markdown Publishing
System
quartose Dynamically Generate Quarto Syntax
quasar Valid Inference on Multiple Quantile
Regressions
quaxnat Estimation of Natural Regeneration Potential
queryBuilder Programmatic Way to Construct Complex Filtering
Queries
querychat Filter and Query Data Frames in 'shiny' Using
an LLM Chat Interface
queryparser Translate 'SQL' Queries into 'R' Expressions
queryup Query the 'UniProtKB' REST API
quest Prepare Questionnaire Data for Analysis
questionr Functions to Make Surveys Processing Easier
queuecomputer Computationally Efficient Queue Simulation
queueing Analysis of Queueing Networks and Models
quickNmix Asymptotic N-Mixture Model Fitting
quickOutlier Detect and Treat Outliers in Data Mining
quickPWCR Quickly Construct and Rate Large Binary
Pairwised Comparisons
quickPlot A System of Plotting Optimized for Speed and
Modularity
quickSentiment A Fast and Flexible Pipeline for Text
Classification
quickblock Quick Threshold Blocking
quickcheck Property Based Testing
quickcode Quick and Essential 'R' Tricks for Better
Scripts
quickmatch Quick Generalized Full Matching
quickpsy Fits Psychometric Functions for Multiple Groups
quickr Compiler for R
quickregression Quick Linear Regression
quid Bayesian Mixed Models for Qualitative
Individual Differences
quiddich QUick IDentification of DIagnostic CHaracters
quietR Simplify Output Verbosity
quiltr Qualtrics for Labelling Text using R
quincunx REST API Client for the 'PGS' Catalog
quint Qualitative Interaction Trees
quitefastmst Euclidean and Mutual Reachability Minimum
Spanning Trees
quollr Visualising How Nonlinear Dimension Reduction
Warps Your Data
quoradsR Get 'Quora' Ads Data via the 'Windsor.ai' API
qusage qusage: Quantitative Set Analysis for Gene
Expression
qvalue Q-value estimation for false discovery rate
control
qvcalc Quasi Variances for Factor Effects in
Statistical Models
qvirus Quantum Computing for Analyzing CD4 Lymphocytes
and Antiretroviral Therapy
qwalkr Handle Continuous-Time Quantum Walks with R
qwraps2 Quick Wraps 2
r.jive Perform JIVE Decomposition for Multi-Source
Data
r.proxy Set Proxy in R Console
r02pro R Programming: Zero to Pro
r2country Country Data with Names, Capitals, Currencies,
Populations, Time, Languages and so on
r2d2 Bivariate (Two-Dimensional) Confidence Region
and Frequency Distribution
r2d3 Interface to 'D3' Visualizations
r2dictionary A Mini-Dictionary for 'R', 'shiny' and
'rmarkdown' Documents
r2dii.analysis Measure Climate Scenario Alignment of Corporate
Loans
r2dii.data Datasets to Measure the Alignment of Corporate
Loan Books with Climate Goals
r2dii.match Tools to Match Corporate Lending Portfolios
with Climate Data
r2dii.plot Visualize the Climate Scenario Alignment of a
Financial Portfolio
r2fireworks Enhance Your 'Rmarkdown' and 'shiny' Apps with
Dazzling Fireworks Celebrations
r2glmm Computes R Squared for Mixed (Multilevel)
Models
r2mlm R-Squared Measures for Multilevel Models
r2pmml Convert R Models to 'PMML'
r2pptx Object Oriented R -> PowerPoint
r2r R-Object to R-Object Hash Maps
r2redux R2 Statistic
r2resize In-Text Resize for Images, Tables and Fancy
Resize Containers in 'shiny', 'rmarkdown' and
'quarto' Documents
r2rtf Easily Create Production-Ready Rich Text Format
(RTF) Tables and Figures
r2shortcode Shorten Function Names of Functions in Another
Package and Create an Index to Make Them
Accessible
r2social Seamless Integration of Sharing and Connect
Buttons in Markdown and Apps
r2spss Format R Output to Look Like SPSS
r2stl Visualizing Data using a 3D Printer
r2sundials Wrapper for 'SUNDIALS' Solving ODE and
Sensitivity Problem
r2symbols Symbols for 'Markdown' and 'Shiny' Application
r311 Interface to the 'open311' Standard
r3PG Simulating Forest Growth using the 3-PG Model
r3dmol Create Interactive 3D Visualizations of
Molecular Data
r3js 'WebGL'-Based 3D Plotting using the 'three.js'
Library
r4ds.tutorials Tutorials for "R for Data Science"
r4googleads 'Google Ads API' Interface
r4lineups Statistical Inference on Lineup Fairness
r4pde Companion to R for Plant Disease Epidemiology
Book
r4ss R Code for Stock Synthesis
r4sub Easily Install and Load the R4SUB Ecosystem
r4subcore Core Data Contracts, Parsers, and Scoring
Primitives for Clinical Submission Readiness
r4subdata Example Datasets for Clinical Submission
Readiness
r4subprofile Regulatory Submission Profiles for Clinical
Submission Readiness
r4subrisk Risk Quantification Engine for Clinical
Submission Readiness
r4subscore Submission Confidence Index Engine
r4subtrace Traceability Engine for Clinical Submission
Readiness
r5r Rapid Realistic Routing with 'R5'
r5rgui Graphical User Interface for 'r5r' Router
r6methods Make Methods for R6 Classes
r6qualitytools R6-Based Statistical Methods for Quality
Science
rACMEMEEV Multi-Variate Measurement Error Adjustment
rADA Statistical Analysis and Cut-Point
Determination of Immunoassays
rARPACK Solvers for Large Scale Eigenvalue and SVD
Problems
rATTAINS Access EPA 'ATTAINS' Data
rAccess Access Control Module for 'shiny' Applications
rAmCharts JavaScript Charts Tool
rAmCharts4 Interface to the JavaScript Library 'amCharts
4'
rAverage Parameter Estimation for the Averaging Model of
Information Integration Theory
rBDAT Implementation of BDAT Tree Taper Fortran
Functions
rBMF Boolean Matrix Factorization
rBahadur Assortative Mating Simulation and Multivariate
Bernoulli Variates
rBayesianOptimization Bayesian Optimization of Hyperparameters
rBeta2009 The Beta Random Number and Dirichlet Random
Vector Generating Functions
rBiasCorrection Correct Bias in DNA Methylation Analyses
rCBA CBA Classifier
rCISSVAE Clustering-Informed Shared-Structure VAE for
Imputation
rCNV Detect Copy Number Variants from SNPs Data
rCausalMGM Scalable Causal Discovery and Model Selection
on Mixed Datasets with 'rCausalMGM'
rChEA3 R Client for the 'ChEA3' Transcription Factor
Enrichment API
rChoiceDialogs 'rChoiceDialogs' Collection
rCoinbase 'Coinbase Advance Trade API Interface'
rCoreGage Data Quality Check Framework for Clinical and
Analytical Data
rD3plot Interactive Networks, Timelines, Barplots,
Galleries with 'D3.js'
rDEA Robust Data Envelopment Analysis (DEA) for R
rDataPipeline Functions to Interact with the 'FAIR Data
Pipeline'
rDeckgl R Bindings to 'Deck.gl'
rDecode Descent-Based Calibrated Optimal Direct
Estimation
rEDM Empirical Dynamic Modeling ('EDM')
rEMM Extensible Markov Model for Modelling Temporal
Relationships Between Clusters
rENA Epistemic Network Analysis
rFAMS Fisheries Analysis and Modeling Simulator
rFDP Resampling-Based False Discovery Proportion
Control
rFIA Estimation of Forest Variables using the FIA
Database
rFSA Feasible Solution Algorithm for Finding Best
Subsets and Interactions
rFerns Random Ferns Classifier
rFocal Run 'FOCAL' Language Source Code
rGV Analysis of Continuous Glucose Monitor Data
rGroovy Groovy Language Integration
rIACI Iberian Actuarial Climate Index Calculations
rIsing High-Dimensional Ising Model Selection
rJava Low-Level R to Java Interface
rJavaEnv 'Java' Environments for R Projects
rKIN (Kernel) Isotope Niche Estimation
rKOMICS Minicircle Sequence Classes (MSC) Analyses
rKenyaForex Historical Data for Kenya Foreign Exchange
Prices
rKolada Access Data from the 'Kolada' Database
rLDCP Text Generation from Data
rLFT Processing Linear Features
rLTP R Interface to the 'LTP'-Cloud Service
rLakeAnalyzer Lake Physics Tools
rLakeHabitat Interpolate Bathymetry and Quantify Physical
Aquatic Habitat
rLifting High-Performance Wavelet Lifting Transforms
rMEA Synchrony in Motion Energy Analysis (MEA)
Time-Series
rMIDAS Multiple Imputation with Denoising Autoencoders
rMIDAS2 Multiple Imputation with 'MIDAS2' Denoising
Autoencoders
rMOST Estimates Pareto-Optimal Solution for Hiring
with 3 Objectives
rMVP Memory-Efficient, Visualize-Enhanced,
Parallel-Accelerated GWAS Tool
rMultiNet Multi-Layer Networks Analysis
rNeighborGWAS Testing Neighbor Effects in Marker-Based
Regressions
rNeighborQTL Interval Mapping for Quantitative Trait Loci
Underlying Neighbor Effects
rOCEAN Two-Way Feature Set Testing for Multi-Omics
rODE Ordinary Differential Equation (ODE) Solvers
Written in R Using S4 Classes
rPACI Placido Analysis of Corneal Irregularity
rPAex Automatic Detection of Experimental Unit in
Precision Agriculture
rPBK Inference and Prediction of Generic
Physiologically-Based Kinetic Models
rPDBapi A Comprehensive Interface for Accessing the
Protein Data Bank
rPackedBar Packed Bar Charts with 'plotly'
rPandas Translating from R to Python's Pandas Package
rPanglaoDB Download and Merge Single-Cell RNA-Seq Data
from the PanglaoDB Database
rPowerSampleSize Sample Size Computations Controlling the
Type-II Generalized Family-Wise Error Rate
rPraat Interface to Praat
rPref Database Preferences and Skyline Computation
rPublic 'Public Trading API'
rQCC Robust Quality Control Chart
rQSAR QSAR Modeling with Multiple Algorithms: MLR,
PLS, and Random Forest
rSAFE Surrogate-Assisted Feature Extraction
rSCA An R Package for Stepwise Cluster Analysis
rSDI Spatial Dispersion Index (SDI) Family of
Metrics for Spatial/Geographic Networks
rSDR Robust Sufficient Dimension Reduction
rSEA Simultaneous Enrichment Analysis
rSFA Slow Feature Analysis
rSPARCS Sites, Population, and Records Cleaning Skills
rSPDE Rational Approximations of Fractional
Stochastic Partial Differential Equations
rSRD Sum of Ranking Differences Statistical Test
rSpectral Spectral Modularity Clustering
rStrava Access the 'Strava' API
rTCRBCRr Repertoire Analysis of the Detected Clonotype
rTG Methods to Analyse Seasonal Radial Tree Growth
Data
rTLS Tools to Process Point Clouds Derived from
Terrestrial Laser Scanning
rTPC Fitting and Analysing Thermal Performance
Curves
rTRIPLEXCWFlux Carbon-Water Coupled Model
rTRNG Advanced and Parallel Random Number Generation
via 'TRNG'
rTableICC Random Generation of Contingency Tables
rTensor Tools for Tensor Analysis and Decomposition
rTephra Tephra Transport Modeling
rTwig Realistic Quantitative Structure Models
rUM R Templates from the University of Miami
rWishart Random Wishart Matrix Generation
rYWAASB Simultaneous Selection by Trait and WAASB Index
rYoutheria Access to the YouTheria Mammal Trait Database
ra4bayesmeta Reference Analysis for Bayesian Meta-Analysis
racademyocean Client for 'AcademyOcean API'
raceland Pattern-Based Zoneless Method for Analysis and
Visualization of Racial Topography
racir Rapid A/Ci Response (RACiR) Data Analysis
ractivecampaign Loading Data from 'ActiveCampaign API v3'
radEmu Using Relative Abundance Data to Estimate of
Multiplicative Differences in Mean Absolute
Abundance
radar Fundamental Formulas for Radar
radarBoxplot Implementation of the Radar-Boxplot
radiant Business Analytics using R and Shiny
radiant.basics Basics Menu for Radiant: Business Analytics
using R and Shiny
radiant.data Data Menu for Radiant: Business Analytics using
R and Shiny
radiant.design Design Menu for Radiant: Business Analytics
using R and Shiny
radiant.model Model Menu for Radiant: Business Analytics
using R and Shiny
radiant.multivariate Multivariate Menu for Radiant: Business
Analytics using R and Shiny
radir Inverse-Regression Estimation of Radioactive
Doses
radlibs Build Your Own Madlibs!
radous Query Random User Data from the Random User
Generator API
radsafer Radiation Safety
radviz3d 3D Radial Visualization
raem Analytic Element Modeling of Steady
Single-Layer Groundwater Flow
rafalib Convenience Functions for Routine Data
Exploration
rafsi Ranking of Alternatives with the RAFSI Method
ragg Graphic Devices Based on AGG
ragnar Retrieval-Augmented Generation (RAG) Workflows
rags2ridges Ridge Estimation of Precision Matrices from
High-Dimensional Data
ragtop Pricing Equity Derivatives with Extensions of
Black-Scholes
rai Revisiting-Alpha-Investing for Polynomial
Regression
rainbow Bagplots, Boxplots and Rainbow Plots for
Functional Data
rainerosr Calculate Rainfall Intensity and Erosivity
Indices
rainette The Reinert Method for Textual Data Clustering
rainfarmr Stochastic Precipitation Downscaling with the
RainFARM Method
rairtable Efficient Wrapper for the 'Airtable' API
rakeR Easy Spatial Microsimulation (Raking) in R
ralger Easy Web Scraping
ramchoice Revealed Preference and Attention Analysis in
Random Limited Attention Models
ramcmc Robust Adaptive Metropolis Algorithm
rameritrade 'TD Ameritrade' API Interface for R
ramify Additional Matrix Functionality
rampage Calibrated Color Ramps
ramps Bayesian Geostatistical Modeling with RAMPS
ramsvm Reinforced Angle-Based Multicategory Support
Vector Machines
randChecks Covariate Balance Checks: Randomization Tests
and Graphical Diagnostics
randPedPCA Fast PCA for Large Pedigrees
randcorr Generate a Random p x p Correlation Matrix
randgeo Generate Random 'WKT' or 'GeoJSON'
randnet Random Network Model Estimation, Selection and
Parameter Tuning
rando Context Aware Random Numbers
random True Random Numbers using RANDOM.ORG
random.cdisc.data Create Random ADaM Datasets
random.polychor.pa A Parallel Analysis with Polychoric Correlation
Matrices
randomForest Breiman and Cutlers Random Forests for
Classification and Regression
randomForestExplainer Explaining and Visualizing Random Forests in
Terms of Variable Importance
randomForestRHF Random Hazard Forests
randomForestSGT Random Forest Super Greedy Trees
randomForestSRC Fast Unified Random Forests for Survival,
Regression, and Classification (RF-SRC)
randomForestVIP Tune Random Forests Based on Variable
Importance & Plot Results
randomGLM Random General Linear Model Prediction
randomGODB Random GO Database
randomLCA Random Effects Latent Class Analysis
randomMachines An Ensemble Modeling using Random Machines
randomNames Generate Random Given and Surnames
randomUniformForest Random Uniform Forests for Classification,
Regression and Unsupervised Learning
randomcoloR Generate Attractive Random Colors
randomizationInference
Flexible Randomization-Based Inference
randomizeBE Create a Random List for Crossover Studies
randomizeR Randomization for Clinical Trials
randomizr Easy-to-Use Tools for Common Forms of Random
Assignment and Sampling
randompack Fast Random Number Generation with Multiple
Engines and Distributions
randotools Create Randomization Lists
randtests Testing Randomness in R
randtoolbox Toolbox for Pseudo and Quasi Random Number
Generation and Random Generator Tests
rang Reconstructing Reproducible R Computational
Environments
rangeBuilder Occurrence Filtering, Geographic
Standardization and Generation of Species Range
Polygons
rangeMapper A Platform for the Study of Macro-Ecology of
Life History Traits
rangeModelMetadata Provides Templates for Metadata Files
Associated with Species Range Models
rangecondprob Tools for Conditional Probability
rangemodelR Mid-Domain Effect and Species Richness
rangen Random Number Generators and Utilities
ranger A Fast Implementation of Random Forests
rangr Mechanistic Simulation of Species Range
Dynamics
rank Customisable Ranking of Numerical and
Categorical Data
rankCorr Total, Between-, and Within-Cluster Spearman
Rank Correlations for Clustered Data
rankFD Rank-Based Tests for General Factorial Designs
rankICC Rank Intraclass Correlation for Clustered Data
rankPlayedInference Conditional Probability Distributions in Hearts
Card Game
rankdifferencetest Kornbrot's Rank Difference Test
rankdist Distance Based Ranking Models
rankhazard Rank-Hazard Plots
rankinPlot Convenient Plotting for the Modified Rankin
Scale and Other Ordinal Outcome Data
rankinma Rank in Network Meta-Analysis
rankrate Joint Statistical Models for Preference
Learning with Rankings and Ratings
ranktreeEnsemble Ensemble Models of Rank-Based Trees with
Extracted Decision Rules
rapiclient Dynamic OpenAPI/Swagger Client
rapidcodeR Optimized Data Analysis System for AI-Based
Text Processing
rapidjsonr 'Rapidjson' C++ Header Files
rapidoc Generates 'RapiDoc' Documentation from an
'OpenAPI' Specification
rapidphylo Rapidly Estimates Phylogeny from Large Allele
Frequency Data Using Root Distances Method
rapidraker Rapid Automatic Keyword Extraction (RAKE)
Algorithm
rapidsplithalf A Fast Permutation-Based Split-Half Reliability
Algorithm
rapidxmlr 'Rapidxml' C++ Header Files
rappdirs Application Directories: Determine Where to
Save Data, Caches, and Logs
rappleads Get Data from 'Apple Ads Campaign Management
API'
rapport A Report Templating System
rapportools Miscellaneous (Stats) Helper Functions with
Sane Defaults for Reporting
rappsflyer Work with AppsFlyer API
rapr Interface to 'Rangeland Analysis Platform'
(RAP) Products
rapsimng APSIM Next Generation
raptools Risk Assessment Plot and Reclassification
Metrics
raptr Representative and Adequate Prioritization
Toolkit in R
raqs Interface to the US EPA Air Quality System
(AQS) API
rar Risk-Adjusted Regression
rare Linear Model with Tree-Based Lasso
Regularization for Rare Features
rareNMtests Ecological and Biogeographical Null Model Tests
for Comparing Rarefaction Curves
rareflow Variational Flow-Based Inference for Rare
Events and Large Deviations
rarefun Functions for Rare Events Analysis
rarestR Rarefaction-Based Species Richness Estimator
raretrans Bayesian Priors for Matrix Population Models
rarms Access Data from the USDA ARMS Data API
rasciidoc Create Reports Using R and 'asciidoc'
rashnu Balanced Sample Size and Power Calculation
Tools
rassta Raster-Based Spatial Stratification Algorithms
raster Geographic Data Analysis and Modeling
rasterDT Fast Raster Summary and Manipulation
rasterImage An Improved Wrapper of image()
rasterKernelEstimates Kernel Based Estimates on in-Memory Raster
Images
rasterList A Raster Where Cells are Generic Objects
rasterVis Visualization Methods for Raster Data
rasterbc Access Forest Ecology Layers for British
Columbia in 2001-2018
rasterdiv Diversity Indices for Numerical Matrices
rasterize Rasterize Graphical Output
rasterpdf Plot Raster Graphics in PDF Files
rasterpic Convert Digital Images into 'SpatRaster'
Objects
ratdat Portal Project Teaching Database
ratelimitr Rate Limiting for R
ratematrix Bayesian Estimation of the Evolutionary Rate
Matrix
rateratio.test Exact Rate Ratio Test
raters A Modification of Fleiss' Kappa in Case of
Nominal and Ordinal Variables
ratesci Confidence Intervals and Tests for Comparisons
of Binomial Proportions or Poisson Rates
rationalfun Manipulation of Rational Functions
ratios Calculating Ratios Between Two Data Sets and
Correction for Adhering Particles on Plants
rattle R Data Science Supporting Rattle
ravecore Core File Structures and Workflows for 'RAVE'
ravel AI Copilot for R Analysis Workflows in
'RStudio'
ravelRy An Interface to the 'Ravelry' API
raven.rdf An R Interface for Raven DataFrames (Beta0)
ravepipeline Reproducible Pipeline Infrastructure for
Neuroscience
ravetools Signal and Image Processing Toolbox for
Analyzing Intracranial Electroencephalography
Data
raw R Actuarial Workshops
rawKS Easily Get True-Positive Rate and
False-Positive Rate and KS Statistic
raws.profile Managing Profiles on Amazon Web Service
raybevel Generates Polygon Straight Skeletons and 3D
Bevels
rayimage Image Processing for Simulated Cameras
raymolecule Parse and Render Molecular Structures in 3D
rayrender Build and Raytrace 3D Scenes
rayshader Create Maps and Visualize Data in 2D and 3D
raytracing Rossby Wave Ray Tracing
rayvertex 3D Software Rasterizer
rb3 Download and Parse Public Data Released by B3
Exchange
rbacon Age-Depth Modelling using Bayesian Statistics
rbbnp A Bias Bound Approach to Non-Parametric
Inference
rbc Regression by Composition
rbcb R Interface to Brazilian Central Bank Web
Services
rbcc Risk-Based Control Charts
rbch Extraction and Analysis of Data from the
Bitcoin Cash (BCH) Blockchain
rbedrock Analysis and Manipulation of Data from
Minecraft Bedrock Edition
rbenchmark Benchmarking Routine for R
rbfmvar Residual-Based Fully Modified Vector
Autoregression
rbgm Tools for 'Box Geometry Model' (BGM) Files and
Topology for the Atlantis Ecosystem Model
rbi Interface to 'LibBi'
rbi.helpers 'rbi' Helper Functions
rbibutils Read 'Bibtex' Files and Convert Between
Bibliography Formats
rbin Tools for Binning Data
rbioacc Inference and Prediction of Toxicokinetic
Models
rbioapi User-Friendly R Interface to Biologic Web
Services' API
rbiodatacr R Client for the BIODATACR Biodiversity Data
Platform of Costa Rica
rbiom Integrated Analysis and Visualization of
Microbiome Data
rbiouml Interact with BioUML Server
rbit Binary Indexed Tree
rblimp Integration of 'Blimp' Software into R
rblt Bio-Logging Toolbox
rbm25 A Light Wrapper Around the 'BM25' 'Rust' Crate
for Okapi BM25 Text Search
rbmi Reference Based Multiple Imputation
rbmiUtils Utility Functions to Support and Extend the
'rbmi' Package
rbmn Handling Linear Gaussian Bayesian Networks
rbounds Perform Rosenbaum Bounds Sensitivity Tests for
Matched and Unmatched Data
rbranding Manage Branding and Accessibility of R Projects
rbreak Restricted Structural Change Models
rbscCI Blyth-Still-Casella Confidence Interval
rbtc Bitcoin API
rbtt Alternative Bootstrap-Based t-Test Aiming to
Reduce Type-I Error for Non-Negative,
Zero-Inflated Data
rbw Residual Balancing Weights for Marginal
Structural Models
rcDEA Robust and Conditional Data Envelopment
Analysis (DEA)
rcarbon Calibration and Analysis of Radiocarbon Dates
rcartocolor 'CARTOColors' Palettes
rcatfish An R Interface to the California Academy of
Sciences Eschmeyer's Catalog of Fishes
rcausim Generate Causally-Simulated Data
rcbalance Large, Sparse Optimal Matching with Refined
Covariate Balance
rcbsubset Optimal Subset Matching with Refined Covariate
Balance
rcccd Class Cover Catch Digraph Classification
rccola Safely Manage API Keys and Load Data from a
REDCap or Other Source
rcd3 Efficient Row-Column Designs for 3 Level
Factorial Experiments in 3 Rows
rcdd Computational Geometry
rcdf A Comprehensive Toolkit for Working with
Encrypted Parquet Files
rcdk Interface to the 'CDK' Libraries
rcdklibs The CDK Libraries Packaged for R
rcdo Wrapper of 'CDO' Operators
rcens Generate Sample Censoring
rchallenge A Simple Data Science Challenge System
rchemo Dimension Reduction, Regression and
Discrimination for Chemometrics
rcheology Data on Base and Recommended Packages for
Current and Previous Versions of R
rchroma A Client for 'ChromaDB'
rciplot Plot Jacobson-Truax Reliable Change Indices
rcites R Interface to the Species+ Database
rclipboard Shiny/R Wrapper for 'clipboard.js'
rcloner Interface to 'rclone' Cloud Storage Utility
rclsp A Modular Two-Step Convex Optimization
Estimator for Ill-Posed Problems
rcmdcheck Run 'R CMD check' from 'R' and Capture Results
rco The R Code Optimizer
rcoder Lightweight Data Structure for Recoding
Categorical Data without Factors
rcoins Identify Naturally Continuous Lines in a
Spatial Network
rcollectadhd Collection of Data Sets Containing ADHD Related
Data
rcolors 270 'NCL' Color Tables in R Language
rcompanion Functions to Support Extension Education
Program Evaluation
rcompendium Create a Package or Research Compendium
Structure
rconf Minimal and Lightweight Configuration Tool
rconfig Manage R Configuration at the Command Line
rconvertu From/to Classification Converter
rcorpora A Collection of Small Text Corpora of
Interesting Data
rcppmlpackexamples Example Use of 'mlpack' from C++ via R
rcpptimer 'Rcpp' Tic-Toc Timer with 'OpenMP' Support
rcprd Extraction and Management of Clinical Practice
Research Datalink Data
rcrimeanalysis An Implementation of Crime Analysis Methods
rcrisp Automate the Delineation of Urban River Spaces
rcrossref Client for Various 'CrossRef' 'APIs'
rcssci Visualization of Restricted Cubic Splines
rct3 Predict Fish Year-Class Strength from Survey
Data
rd2d Estimation and Inference for Boundary
Discontinuity Designs
rda Shrunken Centroids Regularized Discriminant
Analysis
rdacca.hp Hierarchical and Variation Partitioning for
Canonical Analysis
rdaisi R Client for the Daisi Microservice Platform
rdatacite Client for the 'DataCite' API
rdataretriever R Interface to the Data Retriever
rdav Simple 'WebDAV' Client
rdbnomics Download DBnomics Data
rdcmchecks Common Argument Checks for 'r-dcm' Packages
rdcor Rank Distance Correlation Coefficient
rddapp Regression Discontinuity Design Application
rddensity Manipulation Testing Based on Density
Discontinuity
rddi R Interface to DDI Codebook 2.5
rddtools Toolbox for Regression Discontinuity Design
('RDD')
rde Reproducible Data Embedding
rdecision Decision Analytic Modelling in Health Economics
rdeps Identify External Packages Used in a Project
rdflib Tools to Manipulate and Query Semantic Data
rdhs API Client and Dataset Management for the
Demographic and Health Survey (DHS) Data
rdhte Heterogeneous Treatment Effects in Regression
Discontinuity Designs
rdi Repertoire Dissimilarity Index
rdian Client Library for The Guardian
rdist Calculate Pairwise Distances
rdiversity Measurement and Partitioning of
Similarity-Sensitive Biodiversity
rdkitpyr Task-Oriented Cheminformatics in R Using
'RDKit' via 'Python'
rdlearn Safe Policy Learning under Regression
Discontinuity Design with Multiple Cutoffs
rdlocrand Local Randomization Methods for RD Designs
rdmulti Robust Local Polynomial Methods for RD Designs
with Multiple Cutoffs or Multiple Scores
rdnb R Interface to the 'Deutsche Nationalbibliothek
(German National Library) API'
rdocdump Dump 'R' Package Source, Documentation, and
Vignettes into One File
rdomains Get the Category of Content Hosted by a Domain
rdoxygen Create Doxygen Documentation for Source Code
rdpower Power, Sample Size, and Minimum Detectable
Effect Calculations for RD Designs
rdracor Access to the 'DraCor' API
rdrobust Robust Data-Driven Statistical Inference in
Regression-Discontinuity Designs
rdryad Access for Dryad Web Services
rdss Companion Datasets and Functions for Research
Design in the Social Sciences
rdstagger Staggered Regression Discontinuity with Network
Interference
rdtLite Provenance Collector
rdwd Select and Download Climate Data from 'DWD'
(German Weather Service)
rdwplus Inverse Distance Weighted Percent Land Use for
Streams
re 'Python' Style Regular Expression Functions
re2 R Interface to Google RE2 (C++) Regular
Expression Library
reReg Recurrent Event Regression
react Reactivity Helper for 'shiny'
reactCheckbox Checkbox Group Input for 'Shiny'
reactR React Helpers
reactRouter 'React Router' for 'shiny' Apps and 'Quarto'
reactable Interactive Data Tables for R
reactable.extras Extra Features for 'reactable' Package
reactlog Reactivity Visualizer for 'shiny'
read.abares Read Australian Agricultural Data from
Government Agencies
read.gb Open GenBank Files
read.gt3x Parse 'ActiGraph' 'GT3X'/'GT3X+'
'Accelerometer' Data
readABF Loads Axon Binary Files
readBrukerFlexData Reads Mass Spectrometry Data in Bruker *flex
Format
readHAC Read Acoustic HAC Format
readJDX Import Data in the JCAMP-DX Format
readMDTable Read Markdown Tables into Tibbles
readMLData Reading Machine Learning Benchmark Data Sets in
Different Formats
readMzXmlData Reads Mass Spectrometry Data in mzXML Format
readNSx Read 'Blackrock-Microsystems' Files ('NEV',
'NSx')
readODS Read and Write ODS Files
readSX Read 'SurveyXact' Data
readabs Download and Tidy Time Series Data from the
Australian Bureau of Statistics
readaec Access Australian Electoral Commission Data
readapra Download and Tidy Data from the Australian
Prudential Regulation Authority
readbitmap Simple Unified Interface to Read Bitmap Images
(BMP,JPEG,PNG,TIFF)
readbulk Read and Combine Multiple Data Files
readecb Access 'European Central Bank' Data
readelan Read 'ELAN' Files
readepi Read Data from Relational Database Management
Systems and Health Information Systems
reader Suite of Functions to Flexibly Read Data from
Files
readimf Access International Monetary Fund Data via the
'SDMX' 3.0 API
readme2vignette Convert README to Vignette During Package
Installation
readmet Read some less Popular Formats Used in
Meteorology
readmission Hospital Readmission Data for Patients with
Diabetes
readmit Tools for Working with Hospital Readmissions
Data
readmoRe Utilities for Importing and Manipulating
Biomedical Data Files
readnoaa Access 'NOAA' Climate and Weather Data
readobj Fast Reader for 'Wavefront' OBJ 3D Scene Files
readoecd Download and Tidy Data from the 'OECD'
readosense Imports Log and Data Files from Eosense Flux
Chambers
readr Read Rectangular Text Data
readrba Download and Tidy Data from the Reserve Bank of
Australia
readroper Simply Read ASCII Single and Multicard Polling
Datasets
readsdmx Read SDMX-XML Data
readsdr Translate Models from System Dynamics Software
into 'R'
readsparse Read and Write Sparse Matrices in 'SVMLight'
and 'LibSVM' Formats
readstata13 Import 'Stata' Data Files
readtext Import and Handling for Plain and Formatted
Text Files
readtextgrid Read in a 'Praat' 'TextGrid' File
readxl Read Excel Files
ready4 Develop and Use Modular Health Economic Models
readyomics Ready-to-Use Omics Formatting, Analysis, and
Visualization Pipeline
realTimeloads Analyte Flux and Load from Estimates of
Concentration and Discharge
realestatebr Import Brazilian Real Estate Data into R
realtest Where Expectations Meet Reality: Realistic Unit
Testing
ream Density, Distribution, and Sampling Functions
for Evidence Accumulation Models
reappraised Statistical Tools for Assessing Publication
Integrity of Groups of Trials
rearrr Rearranging Data
reasonabletools Clean Water Quality Data for NPDES Reasonable
Potential Analyses
rebib Convert and Aggregate Bibliographies
rebird R Client for the eBird Database of Bird
Observations
rebmix Finite Mixture Modeling, Clustering &
Classification
rebus Build Regular Expressions in a Human Readable
Way
rebus.base Core Functionality for the 'rebus' Package
rebus.datetimes Date and Time Extensions for the 'rebus'
Package
rebus.numbers Numeric Extensions for the 'rebus' Package
rebus.unicode Unicode Extensions for the 'rebus' Package
recalibratiNN Quantile Recalibration for Regression Models
recapr Two Event Mark-Recapture Experiment
recastlessons Explore and Interactively Adjust a Daily
Distribution of Lessons
receptiviti Text Analysis Through the 'Receptiviti' API
recexcavAAR 3D Reconstruction of Archaeological Excavations
recforest Random Survival Forest for Recurrent Events
rechaRge HydroBudget – Groundwater Recharge Model
rechonest R Interface to Echo Nest API
recipes Preprocessing and Feature Engineering Steps for
Modeling
reclin2 Record Linkage Toolkit
recluster Ordination Methods for the Analysis of
Beta-Diversity Indices
recmap Compute the Rectangular Statistical Cartogram
recmetrics Psychometric Evaluation Using Relative Excess
Correlations
recodeflow Interface Functions for PMML Creation, and Data
Recoding
recoder A Simple and Flexible Recoder
recogito Interactive Annotation of Text and Images
recolorize Color-Based Image Segmentation
recombinator Recombinate Nested Lists to Dataframes
recometrics Evaluation Metrics for Implicit-Feedback
Recommender Systems
recommenderlab Lab for Developing and Testing Recommender
Algorithms
recommenderlabBX Book-Crossing Dataset (BX) for 'recommenderlab'
recommenderlabJester Jester Dataset for 'recommenderlab'
reconstructKM Reconstruct Individual-Level Data from
Published KM Plots
reconstructr Session Reconstruction and Analysis
recor Rearrangement Correlation Coefficient
recorder Toolkit to Validate New Data for a Predictive
Model
recosystem Recommender System using Matrix Factorization
recount3 Explore and download data from the recount3
project
rectpacker Rectangle Packing
recurrentpseudo Creates Pseudo-Observations and Analysis for
Recurrent Event Data
recurse Computes Revisitation Metrics for Trajectory
Data
red IUCN Redlisting Tools
reda Recurrent Event Data Analysis
redatam Import 'REDATAM' Files
redatamx R Interface to 'Redatam' Library
redbookperu Access and Analyze Data from the Red Book of
Endemic Plants of Peru
redcapAPI Interface to 'REDCap'
redcas An Interface to the Computer Algebra System
'REDUCE'
reddPrec Reconstruction of Daily Data - Precipitation
redditadsR Get Reddit Ads Data via the 'Windsor.ai' API
redist Simulation Methods for Legislative
Redistricting
redistmetrics Redistricting Metrics
redistverse Easily Install and Load Redistricting Software
redland RDF Library Bindings in R
redlist Interface to the IUCN Red List Data
redlistr Tools for the IUCN Red List of Ecosystems and
Species
redoc Generates 'Redoc' Documentation from an
'OpenAPI' Specification
redquack Transfer 'REDCap' Data to Database
redux R Bindings to 'hiredis'
reems Estimating Effective Migration Surfaces from
Single Nucleotide Polymorphism Data
ref.ICAR Objective Bayes Intrinsic Conditional
Autoregressive Model for Areal Data
refdb A DNA Reference Library Manager
refer Create Object References
referenceIntervals Reference Intervals
refineR Reference Interval Estimation using Real-World
Data
refinr Cluster and Merge Similar Values Within a
Character Vector
refitME Measurement Error Modelling using MCEM
refitgaps Reduce the Number of Holes in the School
Timetable
reflectR Automatic Scoring of the Cognitive Reflection
Test
reflimR Reference Limit Estimation Using Routine
Laboratory Data
reformulas Machinery for Processing Random Effect Formulas
refreg Conditional Multivariate Reference Regions
refreshr Work with Refreshable Datasets that Update
their Data Automatically
refseqR Common Computational Operations Working with
RefSeq Entries (GenBank)
refset Subsets with Reference Semantics
refuge Locate Trans and Intersex-Friendly Toilets
refugees UNHCR Refugee Population Statistics Database
refund Regression with Functional Data
refund.shiny Interactive Plotting for Functional Data
Analyses
refundBayes Bayesian Regression with Functional Data
regDIF Regularized Differential Item Functioning
regMMD Robust Regression and Estimation Through
Maximum Mean Discrepancy Minimization
regRSM Random Subspace Method (RSM) for Linear
Regression
regclass Tools for an Introductory Class in Regression
and Modeling
regcorr Regression Models of Pearson Correlation
Coefficient
regda Regularised Discriminant Analysis
regexSelect Regular Expressions in 'shiny' Select Lists
regextable Pattern-Based Text Extraction and
Standardization with Lookup Tables
reghelper Helper Functions for Regression Analysis
regional Intra- and Inter-Regional Similarity
regioncode Convert Region Names and Division Codes of
China Over Years
regioneR Association analysis of genomic regions based
on permutation tests
regions Processing Regional Statistics
registr Curve Registration for Exponential Family
Functional Data
registry Infrastructure for R Package Registries
reglogit Simulation-Based Regularized Logistic
Regression
regmed Regularized Mediation Analysis
regmedint Regression-Based Causal Mediation Analysis with
Interaction and Effect Modification Terms
regmhmm 'regmhmm' Fits Hidden Markov Models with
Regularization
regnet Network-Based Regularization for Generalized
Linear Models
regport Regression Model Processing Port
regr.easy Easy Linear, Quadratic and Cubic Regression
Models
regrap Reverse Graphical Approaches
regreplaceR Match and Replace Strings Based on Named Groups
in Regular Expressions
regress Gaussian Linear Models with Linear Covariance
Structure
regress3d Create 3D Regression Surfaces
regressinator Simulate and Diagnose (Generalized) Linear
Models
regressoR Regression Data Analysis System
regrrr Toolkit for Compiling, (Post-Hoc) Testing, and
Plotting Regression Results
regsem Regularized Structural Equation Modeling
regspec Non-Parametric Bayesian Spectrum Estimation for
Multirate Data
regsubseq Detect and Test Regular Sequences and
Subsequences
regtomean Regression Toward the Mean
regtools Regression and Classification Tools
rehh Searching for Footprints of Selection using
'Extended Haplotype Homozygosity' Based Tests
rehh.data Data Only: Searching for Footprints of
Selection using Haplotype Homozygosity Based
Tests
reinstallr Search and Install Missing Packages
relMix Relationship Inference for DNA Mixtures
relSim Relative Simulator
relaimpo Relative Importance of Regressors in Linear
Models
relatable Functions for Mapping Key-Value Pairs,
Many-to-Many, One-to-Many, and Many-to-One
Relations
relations Data Structures and Algorithms for Relations
relcircle Draw Regulatory Relationships Between Genes
reldist Relative Distribution Methods
releaser Help with Preparing a New Version of an R
Package
relevance Calculate Relevance and Significance Measures
relevent Relational Event Models
reliaR Comprehensive Tools for some Probability
Distributions
reliabilitydiag Reliability Diagrams Using Isotonic Regression
reliacoef Unidimensional and Multidimensional Reliability
Coefficients
relimp Relative Contribution of Effects in a
Regression Model
relliptical The Truncated Elliptical Family of
Distributions
relsurv Relative Survival
rema Rare Event Meta Analysis
remaCor Random Effects Meta-Analysis for Correlated
Test Statistics
remap Regional Spatial Modeling with Continuous
Borders
rematch Match Regular Expressions with a Nicer 'API'
rematch2 Tidy Output from Regular Expression Matching
remdata A Collection of Empirical and Simulated
Relational Event Data Sequences
remedy 'RStudio' Addins to Simplify 'Markdown' Writing
remify Processing and Transforming Relational Event
History Data
remindR Insert and Extract "Reminders" from Function
Comments
remiod Reference-Based Multiple Imputation for
Ordinal/Binary Response
remmy API Client for 'Lemmy'
remode Recursive Mode Detection for Distributions of
Ordinal Data
remote Empirical Orthogonal Teleconnections in R
remotePARTS Spatiotemporal Autoregression Analyses for
Large Data Sets
remotes R Package Installation from Remote
Repositories, Including 'GitHub'
rempsyc Convenience Functions for Psychology
remss Refining Evaluation Methodology on Stage System
remstats Computes Statistics for Relational Event
History Data
remstimate Optimization Frameworks for Tie-Oriented and
Actor-Oriented Relational Event Models
remulate Simulate Dynamic Networks from Relational Event
Models
remverse A Meta-Package for Relational Event History
Analysis
rencher Datasets from the Book "Methods of Multivariate
Analysis (3rd)"
renpow Renewable Power Systems and the Environment
rentrez 'Entrez' in R
renv Project Environments
renz R-Enzymology
repairData Open Repair Alliance Datasets 2021
repana Repeatable Analysis in R
repeated Non-Normal Repeated Measurements Models
repec Access RePEc Data Through API
repello Reports from Trello in R
repfdr Replicability Analysis for Multiple Studies of
High Dimension
repfun Create Tables, Listings and Figures using
Functions Styled after SAS™ Macros
replacer A Value Replacement Utility
replicateBE Average Bioequivalence with Expanding Limits
(ABEL)
replicatedpp2w Two-Way ANOVA-Like Method to Analyze Replicated
Point Patterns
repmis Miscellaneous Tools for Reproducible Research
repmod Create Report Table from Different Objects
repoRter.nih R Interface to the 'NIH RePORTER Project' API
repolr Repeated Measures Proportional Odds Logistic
Regression
report Automated Reporting of Results and Statistical
Models
reportROC An Easy Way to Report ROC Analysis
reportReg An Easy Way to Report Regression Analysis
reportRmd Tidy Presentation of Clinical Reporting
reporter Creates Statistical Reports
reportfactory Lightweight Infrastructure for Handling
Multiple R Markdown Documents
reportr A General Message and Error Reporting System
reporttools Generate "LaTeX"" Tables of Descriptive
Statistics
repr Serializable Representations
represent Determine How Representative Two
Multidimensional Data Sets are
representr Create Representative Records After Entity
Resolution
represtools Reproducible Research Tools
reprex Prepare Reproducible Example Code via the
Clipboard
reproducer Reproduce Statistical Analyses and
Meta-Analyses
reproducible Enhance Reproducibility of R Code
reproducibleRchunks Automated Reproducibility Checks for R Markdown
Documents
reproj Coordinate System Transformations for Generic
Map Data
reproresearchR Companion Package for 'Reproducible Research
Using R'
repsd Root Expected Proportion Squared Difference for
Detecting DIF
repsim Measures of Representational Similarity Across
Models
reptiledb.data Reptile Database Data
repurrrsive Examples of Recursive Lists and Nested or Split
Data Frames
reqres Powerful Classes for HTTP Requests and
Responses
request High Level 'HTTP' Client
requiRements Helper Package to Install Packages for R
requireR R Source Code Modularizer
rerandPower Power and Sample Size Calculations for
Completely Randomized and Rerandomized
Experiments
rerddap General Purpose Client for 'ERDDAP™' Servers
rerddapUtils Miscellaneous Utilities for 'rerddap'
rerddapXtracto Extracts Environmental Data from 'ERDDAP™' Web
Services
resLIK Representation-Level Control Surfaces for
Reliability Sensing
resample Resampling Functions
resampledata Data Sets for Mathematical Statistics with
Resampling in R
resampledata3 Data Sets for "Mathematical Statistics with
Resampling and R" (3rd Ed)
rescomp Efficient Modelling of Resource Competition
resde Estimation in Reducible Stochastic Differential
Equations
resemble Similarity Retrieval and Local Learning for
Spectral Chemometrics
reservoir Tools for Analysis, Design, and Operation of
Water Supply Storages
reservoirnet Reservoir Computing and Echo State Networks
reservr Fit Distributions and Neural Networks to
Censored and Truncated Data
resevol Simulate Agricultural Production and Evolution
of Pesticide Resistance
reshape Flexibly Reshape Data
reshape2 Flexibly Reshape Data: A Reboot of the Reshape
Package
resilience Predictors of Resilience to a Stressor in a
Single-Arm Study
resizableSplitLayout Resizable Split Layout Module for 'shiny'
reslife Calculate Mean Residual Life (MRL) and Related
Values for Different Distributions
reslr Modelling Relative Sea Level Data
resmush Optimize and Compress Image Files with
'reSmush.it'
resourcecode Access to the 'RESOURCECODE' Hindcast Database
resourcecodedata Resourcecode Database Configuration Data
resourcer Resource Resolver
respR Import, Process, Analyse, and Calculate Rates
from Respirometry Data
respirometry Tools for Conducting and Analyzing Respirometry
Experiments
responsePatterns Screening for Careless Responding Patterns
resquin Response Quality Indicators for Survey Research
restatapi Search and Retrieve Data from Eurostat Database
restatis R Wrapper to Access a Wide Range of Germany's
Federal Statistical System Databases Based on
the GENESIS Web Service RESTful API of the
German Federal Statistical Office
(Statistisches Bundesamt/Destatis)
restaurant Restaurant Data for Entity Resolution
restez Create and Query a Local Copy of 'GenBank' in R
restfulr R Interface to RESTful Web Services
restimizeapi Functions for Working with the
'www.estimize.com' Web Services
restrictR Composable Runtime Contracts for R
restriktor Restricted Statistical Estimation and Inference
for Linear Models
result Result Type for Safely Handling Operations that
can Succeed or Fail
resultcheck Result Stability Checks for Empirical R
Projects
resumer Build Resumes with R
resumiR Medidas Resumen y Tablas de Frecuencia para
Datos Numéricos / Summary Measures and
Frequency Tables for Numerical Data
retel Regularized Exponentially Tilted Empirical
Likelihood
rethinker 'RethinkDB' Client
rethnicity Predicting Ethnic Group from Names
reticulate Interface to 'Python'
retimer Retime and Analyse Speech Signals
retistruct Retinal Reconstruction Program
retmort Estimate User-Based Tagging Mortality and Tag
Loss in Mark-Recapture Studies
retriever Generate Disease-Specific Response Signatures
from the LINCS-L1000 Data
retrodesign Tools for Type S (Sign) and Type M (Magnitude)
Errors
retroharmonize Ex Post Survey Data Harmonization
retrosheet Import Professional Baseball Data from
'Retrosheet'
retry Repeated Evaluation
reval Argument Table Generation for Sensitivity
Analysis
revdbayes Ratio-of-Uniforms Sampling for Bayesian Extreme
Value Analysis
revealedPrefs Revealed Preferences and Microeconomic
Rationality
revealjs R Markdown Format for 'reveal.js' Presentations
reveneraR Connect to Your 'Revenera' (Formerly
'Revulytics') Data
reverseR Linear Regression Stability to Significance
Reversal
revert Reversion Mutation Detector for DNA Sequencing
Data
revise Dynamic Revision Letters for 'Rmarkdown'
Manuscripts
reviser Analyzing Revisions in Real-Time Time Series
Vintages
revpref Tools for Computational Revealed Preference
Analysis
revss Robust Estimation in Very Small Samples
revtools Tools to Support Evidence Synthesis
rewie Data Preparation and Diagnostics for Random
Effects Within Estimator
rex Friendly Regular Expressions
rexer Random Exercises and Exams Generator
rexpokit R Wrappers for EXPOKIT; Other Matrix Functions
rextendr Build 'Rust' Powered 'R' Packages
rextor Prepare 'WEXTOR' Data
rfPermute Estimate Permutation p-Values for Random Forest
Importance Metrics
rfVarImpOOB Unbiased Variable Importance for Random Forests
rfacebookstat Load Data from Facebook API Marketing
rfacts R Interface to 'FACTS' on Unix-Like Systems
rfars Download and Analyze Crash Data
rfieldclimate Client for the 'FieldClimate' API
rfinterval Predictive Inference for Random Forests
rfishbase R Interface to 'FishBase'
rfisheries 'Programmatic Interface to the
'openfisheries.org' API'
rflexscan The Flexible Spatial Scan Statistic
rflsgen Neutral Landscape Generator with Targets on
Landscape Indices
rfm Recency, Frequency and Monetary Value Analysis
rfoaas R Interface to 'FOAAS'
rfold Working with many R Folders Within an R Package
rfordummies Code Examples to Accompany the Book "R for
Dummies"
rformat Base R Code Formatter
rfriend Provides Batch Functions and Visualisation for
Basic Statistical Procedures
rfvimptest Sequential Permutation Testing of Random Forest
Variable Importance Measures
rfviz Interactive Visualization Tool for Random
Forests
rgTest Robust Graph-Based Two-Sample Test
rgabriel Gabriel Multiple Comparison Test and Plot the
Confidence Interval on Barplot
rgbIndices RGB Visible Indices for Image Analysis
rgbif Interface to the Global Biodiversity
Information Facility API
rgee R Bindings for Calling the 'Earth Engine' API
rgeedim Search, Composite, and Download 'Google Earth
Engine' Imagery with the 'Python' Module
'geedim'
rgen Random Sampling Distribution C++ Routines for
Armadillo
rgenius Get 'Genius' API Lyrics
rgenoud R Version of GENetic Optimization Using
Derivatives
rgeoda R Library for Spatial Data Analysis
rgeomorphon A Lightweight Implementation of the
'Geomorphon' Algorithm
rgeomstats Interface to 'Geomstats'
rgeopat2 Additional Functions for 'GeoPAT' 2
rgl 3D Visualization Using OpenGL
rgl.cry 'cry' and 'rgl' — Applications in
Crystallography
rgl2gltf Read and Write '.gltf' and '.glb' Files
rglobi Interface to Global Biotic Interactions
rglplus Extension of the 'rgl' 3D Visualization Package
rgm Advanced Inference with Random Graphical Models
rgml0 Random Graphical Model Estimation under L0
Penalty
rgnoisefilt Elimination of Noisy Samples in Regression
Datasets using Noise Filters
rgnparser Parse Scientific Names
rgoogleads Loading Data from 'Google Ads API'
rgoogleclassroom API Wrapper for Google Classroom and Google
Forms
rgph Pair Critical Points and Compute Persistent
Homology of Reeb Graphs
rgplates R Interface for the GPlates Web Service and
Desktop Application
rgraph6 Representing Graphs as 'graph6', 'digraph6' or
'sparse6' Strings
rgrass Interface Between 'GRASS' Geographical
Information System and 'R'
rgsp Repetitive Group Sampling Plan Based on Cpk
rgsrs Query the FDA Global Substance Registration
System (GSRS) API
rgtmx Manage GTmetrix Tests in R
rgugik Search and Retrieve Spatial Data from 'GUGiK'
rgw Goodman-Weare Affine-Invariant Sampling
rhandsontable Interface to the 'Handsontable.js' Library
rhcoclust Robust Hierarchical Co-Clustering to Identify
Significant Co-Cluster
rhdf5 R Interface to HDF5
rhdf5filters HDF5 Compression Filters
rheroicons A Zero Dependency 'SVG' Icon Library for
'Shiny'
rhierbaps Clustering Genetic Sequence Data Using the
HierBAPS Algorithm
rhino A Framework for Enterprise Shiny Applications
rhmc Hamiltonian Monte Carlo
rhnerm Random Heteroscedastic Nested Error Regression
rhoR Rho for Inter Rater Reliability
rhoneycomb Analysis of Honeycomb Selection Designs
rhosa Higher-Order Spectral Analysis
rhub Tools for R Package Developers
rhymer Wrapper for the 'Datamuse' API to Find Rhyming
and Associated Words
rhype Work with Hypergraphs in R
ri2 Randomization Inference for Randomized
Experiments
riAFTBART A Flexible Approach for Causal Inference with
Multiple Treatments and Clustered Survival
Outcomes
rib An Implementation of 'Interactive Brokers' API
ribd Pedigree-based Relatedness Coefficients
ribiosArg Argument Handling for Command-Line, Stand-Alone
R Scripts
ribiosGraph Manipulate and Visualize Graphs in the 'ribios'
Software Suite
ribiosIO Input/Output Utilities of the 'ribios' Suite
ribiosMath Mathematical and Statistical Tools in 'ribios'
ribiosPlot Plotting Module of the 'ribios' Software Suite
ribiosUtils Utilities from and Interface to the 'Bioinfo-C'
('BIOS') Library
ricci Ricci Calculus
rice Radiocarbon Equations
ricegeneann Gene Annotation of Rice (Oryza Sativa
L.spp.japonica)
riceidconverter Convert Biological ID from RAP or MSU to SYMBOL
for Oryza Sativa
riceware A Diceware Passphrase Implementation
richCluster Fast, Robust Clustering Algorithms for Gene
Enrichment Data
rict Redistricting in Clean Tables
ricu Intensive Care Unit Data with R
rid Multiple Change-Point Detection in Multivariate
Time Series
ridge Ridge Regression with Automatic Selection of
the Penalty Parameter
ridgeBART Bayesian Additive Regression Trees with Ridge
Function Outputs
ridgetorus PCA on the Torus via Density Ridges
ridgregextra Ridge Regression Parameter Estimation
ridigbio Interface to the iDigBio Data API
riem Accesses Weather Data from the Iowa Environment
Mesonet
riemtan Riemannian Metrics for Symmetric Positive
Definite Matrices
rifreg Estimate Recentered Influence Function
Regression
rifttable Results Tables to Bridge the Rift Between
Epidemiologists and Their Data
rigr Regression, Inference, and General Data
Analysis Tools in R
riingo An R Interface to the 'Tiingo' Stock Price API
rim Interface to 'Maxima', Enabling Symbolic
Computation
rimu Responses in Multiplex
rinat Access 'iNaturalist' Data Through APIs
rineq Concentration Index and Decomposition for
Health Inequalities
rinet Clinical Reference Interval Estimation with
Reference Interval Network (RINet)
ring Circular / Ring Buffers
ringbp Simulate and Evaluate Targeted Interventions in
Infectious Disease Outbreaks
ringostat Load Data from 'Ringostat API'
rintcal Radiocarbon Calibration Curves
rintimg View Images on Full Screen in 'RMarkdown'
Documents and 'shiny' Applications
rintrojs Wrapper for the 'Intro.js' Library
rio A Swiss-Army Knife for Data I/O
rioja Analysis of Quaternary Science Data
rioplot Turn a Regression Model Inside Out
rip.opencv Interface to 'OpenCV' Image Processing Routines
ripc Download and Tidy IPC and CH Data
ripserr Calculate Persistent Homology with Ripser-Based
Engines
rirods R Client for 'iRODS'
rise Conduct RISE Analysis
risk.assessr Assessing Package Risk Metrics
riskCommunicator G-Computation to Estimate Interpretable
Epidemiological Effects
riskParityPortfolio Design of Risk Parity Portfolios
riskPredictClustData Assessing Risk Predictions for Clustered Data
riskRegression Risk Regression Models and Prediction Scores
for Survival Analysis with Competing Risks
riskSimul Risk Quantification for Stock Portfolios under
the T-Copula Model
riskclustr Functions to Study Etiologic Heterogeneity
riskdiff Risk Difference Estimation with Multiple Link
Functions and Inverse Probability of Treatment
Weighting
riskmetric Risk Metrics to Evaluating R Packages
risks Estimate Risk Ratios and Risk Differences using
Regression
riskscores Optimized Integer Risk Score Models
risksetROC Riskset ROC Curve Estimation from Censored
Survival Data
riskyr Rendering Risk Literacy more Transparent
ritalic Interface to the ITALIC Database of Lichen
Biodiversity
ritis Integrated Taxonomic Information System Client
riv Robust Instrumental Variables Estimator
riverconn Fragmentation and Connectivity Indices for
Riverscapes
riverdist River Network Distance Computation and
Applications
rivernet Read, Analyze and Plot River Networks
rivnet Extract and Analyze Rivers from Elevation Data
rivr Steady and Unsteady Open-Channel Flow
Computation
rix Reproducible Data Science Environments with
'Nix'
rixpress Build Reproducible Analytical Pipelines with
'Nix'
rjade A Clean, Whitespace-Sensitive Template Language
for Writing HTML
rjaf Regularized Joint Assignment Forest with
Treatment Arm Clustering
rjags Bayesian Graphical Models using MCMC
rjd3bench Temporal Disaggregation and Benchmarking in
'JDemetra+' 3.x
rjd3jars External jars for 'rjdverse' R Packages
rjd3production Prepare for Production of Seasonal Adjustment
with 'JDemetra+'
rjd3providers Interface to 'JDemetra+' 3.x Time Series
Analysis Software
rjd3toolkit Utility Functions Around 'JDemetra+ 3.0'
rjd3tramoseats Seasonal Adjustment with TRAMO-SEATS in
'JDemetra+' 3.x
rjd3workspace Wrangling 'JDemetra+ 3.x' Workspace
rjd3x13 Seasonal Adjustment with 'X-13' in 'JDemetra+'
3.x
rjd3xjars R Interface to 'JDemetra+ 3.x' Time Series
Analysis Software
rjdmarkdown 'rmarkdown' Extension for Formatted 'RJDemetra'
Outputs
rjdqa Quality Assessment for Seasonal Adjustment
rjdworkspace Manipulate 'JDemetra+' Workspaces
rje Miscellaneous Useful Functions for Statistics
rjqpd The Johnson Quantile-Parameterised Distribution
rjson JSON for R
rjsoncons Query, Pivot, Patch, and Validate 'JSON' and
'NDJSON'
rjstat Handle 'JSON-stat' Format in R
rjtools Preparing, Checking, and Submitting Articles to
the 'R Journal'
rjuliabugs Interface to 'JuliaBUGS.jl' from R
rjwsacruncher Interface to the 'JWSACruncher' of 'JDemetra+'
rkaf Kolmogorov-Arnold Fourier Networks in R
rkafkajars External Jars Required for Package 'rkafka'
rkriging Kriging Modeling
rkt Mann-Kendall Test, Seasonal and Regional
Kendall Tests
rkvo Read Key/Value Pair Observations
rlandfire Interface to 'LANDFIRE Product Service' API
rlang Functions for Base Types and Core R and
'Tidyverse' Features
rlcv Robust Likelihood Cross Validation Bandwidth
Selection
rle Common Functions for Run-Length Encoded Vectors
rleafmap Interactive Maps with R and Leaflet
rlecuyer R Interface to RNG with Multiple Streams
rlemon R Access to LEMON Graph Algorithms
rless Leaner Style Sheets
rlfsm Simulations and Statistical Inference for
Linear Fractional Stable Motions
rlibkriging Kriging Models using the 'libKriging' Library
rliger Linked Inference of Genomic Experimental
Relationships
rlinkedinads Load Data from 'Linkedin Advertising API'
rlist A Toolbox for Non-Tabular Data Manipulation
rlistings Clinical Trial Style Data Readout Listings
rlmstudio Access and Control LM Studio
rlog A Simple, Opinionated Logging Utility
rlowdb Lightweight JSON-Based Database
rlppinv Linear Programming via Regularized Least
Squares
rly Tools to Create Formal Language Parser
rmacrostrat Fetch Geologic Data from the 'Macrostrat'
Platform
rmake Makefile Generator for R Analytical Projects
rmangal 'Mangal' Client
rmapshaper Client for 'mapshaper' for 'Geospatial'
Operations
rmapzen Client for 'Mapzen' and Related Map APIs
rmarchingcubes Calculate 3D Contour Meshes Using the Marching
Cubes Algorithm
rmargint Robust Marginal Integration Procedures
rmarkdown Dynamic Documents for R
rmass2 Repeated Measures with Attrition: Sample Sizes
and Power Levels for 2 Groups
rmatio Read and Write 'Matlab' Files
rmcfs The MCFS-ID Algorithm for Feature Selection and
Interdependency Discovery
rmcmc Robust Markov Chain Monte Carlo Methods
rmcorr Repeated Measures Correlation
rmdHelpers Helper Functions for Rmd Documents
rmdd Resolve Mammal Names with the Mammal Diversity
Database
rmdfiltr 'Lua'-Filters for R Markdown
rmdformats HTML Output Formats and Templates for
'rmarkdown' Documents
rmdpartials Partial 'rmarkdown' Documents to Prettify your
Reports
rmdplugr Plugins for R Markdown Formats
rmdwc Count Words and Characters in R Markdown and
Jupyter Notebooks
rmedsem Statistical Mediation Analysis for SEMs
rmerec MEREC - Method Based on the Removal Effects of
Criteria
rmet Download and Read Brazilian Meteorological Data
from INMET
rmeta Meta-Analysis
rmetalog The Metalog Distribution
rmfanova Repeated Measures Functional Analysis of
Variance
rmgarch Multivariate GARCH Models
rminer Machine Learning Classification and Regression
Methods
rminqa Derivative-Free Optimization in R using C++
rmio Provides 'mio' C++11 Header Files
rmlnomogram Construct Explainable Nomogram for a Machine
Learning Model
rmon Monitor Changes in Source Code and Auto-Restart
Your Server
rmonocypher Easy Encryption of R Objects using Strong
Modern Cryptography
rmoo Multi-Objective Optimization in R
rmp Rounded Mixture Package
rmpw Causal Mediation Analysis Using Weighting
Approach
rms Regression Modeling Strategies
rmsBMA Reduced Model Space Bayesian Model Averaging
rmsMD Output Results from 'rms' Models for Medical
Journals
rmsb Bayesian Regression Modeling Strategies
rmsfact Amazing Random Facts About the World's Greatest
Hacker
rmsfuns Quickly View Data Frames in 'Excel', Build
Folder Paths and Create Date Vectors
rmstBayespara Bayesian Restricted Mean Survival Time for
Cluster Effect
rmstcompsens Comparing Restricted Mean Survival Time as
Sensitivity Analysis
rmt Restricted Mean Time in Favor of Treatment
rmumps Wrapper for MUMPS Library
rmutil Utilities for Nonlinear Regression and Repeated
Measurements Models
rmweather Tools to Conduct Meteorological Normalisation
and Counterfactual Modelling for Air Quality
Data
rmzqc Creation, Reading and Validation of 'mzqc'
Files
rnaCrosslinkOO Analysis of RNA Crosslinking Data
rnames Recursive Display of Items in Nested Lists
rnassqs Access Data from the NASS 'Quick Stats' API
rnaturalearth World Map Data from Natural Earth
rnaturalearthdata World Vector Map Data from Natural Earth Used
in 'rnaturalearth'
rnbp Wrapper for the National Bank of Poland API
rncl An Interface to the Nexus Class Library
rneos XML-RPC Interface to NEOS
rnetcarto Fast Network Modularity and Roles Computation
by Simulated Annealing (Rgraph C Library
Wrapper for R)
rngWELL Toolbox for WELL Random Number Generators
rngtools Utility Functions for Working with Random
Number Generators
rnmamod Bayesian Network Meta-Analysis with Missing
Participants
rnn Recurrent Neural Network
rnndescent Nearest Neighbor Descent Method for Approximate
Nearest Neighbors
rnnmf Regularized Non-Negative Matrix Factorization
rnpn Interface to the USA National 'Phenology'
Network 'API'
rnr Rosenbaum and Rubin Sensitivity
rnrfa UK National River Flow Archive Data from R
roadDB Access Data from the ROCEEH Out of Africa
Database (ROAD)
roadoi Find Free Versions of Scholarly Publications
via Unpaywall
roads Road Network Projection
roahd Robust Analysis of High Dimensional Data
roam Remote Objects with Active-Binding Magic
rob Run Orders with Assignment-Expansion Method
robCompositions Compositional Data Analysis
robRatio M-Estimators for Generalized Ratio and Linear
Regression Models
robStepSplitReg Robust Stepwise Split Regularized Regression
robber Using Block Model to Estimate the Robustness of
Ecological Network
robcat Robust Categorical Data Analysis
robcor Robust Correlations
robcp Robust Change-Point Tests
roben Robust Bayesian Variable Selection for
Gene-Environment Interactions
robfilter Robust Time Series Filters
robflreg Robust Functional Linear Regression
robin ROBustness in Network
robis Ocean Biodiversity Information System (OBIS)
Client
robmed (Robust) Mediation Analysis
robmedExtra Extra Functionality for (Robust) Mediation
Analysis
robmixglm Robust Generalized Linear Models (GLM) using
Mixtures
robnptests Robust Nonparametric Two-Sample Tests for
Location/Scale
roboBayes Robust Online Bayesian Monitoring
robomit Robustness Checks for Omitted Variable Bias
robotoolbox Client for the 'KoboToolbox' API
robotstxt A 'robots.txt' Parser and
'Webbot'/'Spider'/'Crawler' Permissions Checker
robqda Robust Quadratic Discriminant Analysis
robreg3S Three-Step Regression and Inference for
Cellwise and Casewise Contamination
robregcc Robust Regression with Compositional Covariates
robscale Accelerated Estimation of Robust Location and
Scale
robsel Robust Selection Algorithm
robservable Import an Observable Notebook as HTML Widget
robslopes Fast Algorithms for Robust Slopes
robsurvey Robust Survey Statistics Estimation
robumeta Robust Variance Meta-Regression
robusTest Calibrated Correlation and Two-Sample Tests
robust Port of the S+ "Robust Library"
robust.prioritizr Robust Systematic Conservation Prioritization
robust2sls Outlier Robust Two-Stage Least Squares
Inference and Testing
robustDA Robust Mixture Discriminant Analysis
robustDIF Differential Item Functioning Using Robust
Scaling
robustETM Robust Methods using Exponential Tilt Model
robustGarch Robust Garch(1,1) Model
robustHD Robust Methods for High-Dimensional Data
robustSFA Robust Estimation of Stochastic Frontier Models
with MDPDE
robustT2 Robust Hotelling-Type T² Control Chart Based on
the Dual STATIS Approach
robustX 'eXtra' / 'eXperimental' Functionality for
Robust Statistics
robustarima Robust ARIMA Modeling
robustbase Basic Robust Statistics
robustbetareg Robust Beta Regression
robustfa Object Oriented Solution for Robust Factor
Analysis
robustlm Robust Variable Selection with Exponential
Squared Loss
robustlmm Robust Linear Mixed Effects Models
robustmatrix Robust Matrix-Variate Parameter Estimation
robustmeta Robust Inference for Meta-Analysis with
Influential Outlying Studies
robustrank Robust Rank-Based Tests
robustrao An Extended Rao-Stirling Diversity Index to
Handle Missing Data
robustreg Robust Regression Functions
robustsur Robust Estimation for Seemingly Unrelated
Regression Models
robusttseq Robust Statistical Methods with Huber
Estimators
robustvarComp Robust Estimation of Variance Component Models
robvis Visualize the Results of Risk-of-Bias (ROB)
Assessments
rocNIT Non-Inferiority Test for Paired ROC Curves
rocTools Tools for Distribution-Based ROC Smoothing
Using 'pROC'
rocbc Statistical Inference for Box-Cox Based
Receiver Operating Characteristic Curves
rocc ROC Based Classification
roccv ROC for Cross Validation Results
rock Reproducible Open Coding Kit
rockchalk Regression Estimation and Presentation
rocker Database Interface Class
rockr 'Rock' R Server Client
rockx Easily Import Data from Your 'ODK-X Sync
Endpoint'
roclab ROC-Optimizing Binary Classifiers
roclang Functions for Diffusing Function Documentations
into 'Roxygen' Comments
rocnp Work with Romanian Personal Numeric Codes PNC /
CNP
rococo Robust Rank Correlation Coefficient and Test
rocrateR Tools for Creating and Manipulating RO-Crates
rocsvm.path The Entire Solution Paths for ROC-SVM
rocvb ROC-Based Inference for Diagnostic Accuracy
Under Verification Bias
rodd Optimal Discriminating Designs
rodeo A Code Generator for ODE-Based Models
rofanova Robust Functional Analysis of Variance
roger Automated Grading of R Scripts
rolap Obtaining Star Databases from Flat Tables
roll Rolling and Expanding Statistics
rollama Communicate with 'Ollama' to Run Large Language
Models Locally
rollbar Error Tracking and Logging
rolldown R Markdown Output Formats for Storytelling
rollinglda Construct Consistent Time Series from Textual
Data
rollout Tools for Designing, Simulating, and Analyzing
Implementation Rollout Trials
rollshap Rolling Shapley Values
rollup A Tidy Grouping Set Aggregation
rollupTree Perform Recursive Computations
roloc Convert Colour Specification to Colour Name
rolocISCCNBS A Colour List and Colour Metric Based on the
ISCC-NBS System of Color Designation
rolr Finding Optimal Three-Group Splits Based on a
Survival Outcome
romic R for High-Dimensional Molecular Data
ronfig Load Configuration Values
rootSolve Nonlinear Root Finding, Equilibrium and
Steady-State Analysis of Ordinary Differential
Equations
rope Model Selection with FDR Control of Selected
Variables
ropenblas Download, Compile and Link 'OpenBLAS' Library
with R
ropensecretsapi R Package for the OpenSecrets.org API
roperators Additional Operators to Help You Write Cleaner
R Code
ropercenter Reproducible Data Retrieval from the Roper
Center Data Archive
ropls PCA, PLS(-DA) and OPLS(-DA) for multivariate
analysis and feature selection of omics data
roptim General Purpose Optimization in R using C++
roptions Option Strategies and Valuation
rorcid Interface to the 'Orcid.org' API
roroph Philippine Roll-on/Roll-Off (RoRo) Connectivity
and Transport Data
rorqual.morpho Morphological Allometry of Rorquals
rosario A Null Model Algorithm to Analyze Cyclical Data
in Ecology
roseRF ROSE Random Forests for Robust Semiparametric
Efficient Estimation
rosm Plot Raster Map Tiles from Open Street Map and
Other Sources
rosmium Bindings for 'Osmium Tool'
rospca Robust Sparse PCA using the ROSPCA Algorithm
rosv Client to Access and Operate on the 'Open
Source Vulnerability' API
rotasym Tests for Rotational Symmetry on the
Hypersphere
rotationForest Fit and Deploy Rotation Forest Models
rotations Working with Rotation Data
rotatogram A Non-Axis-Dominant Association Plotting Tool
rotl Interface to the 'Open Tree of Life' API
rotor Log Rotation and Conditional Backups
rotulador Useful Functions for Programming and Generating
Documents
roughnet Visualize Networks using 'roughjs'
roughsf Visualize Spatial Data using 'roughjs'
round Rounding to Decimal Digits
roundRobinR Manipulate and Analyze Round Robin Dyadic Data
roundhouse Random Chuck Norris Facts
roundr Incorporate Rounding for Discrete Data Modeling
roundwork Rounding Infrastructure
roundyh Round Dataframe
routing 'Express.js' Like Routing for R Web Frameworks
routr A Simple Router for HTTP and WebSocket Requests
roxigraph 'RDF' and 'SPARQL' for R using 'Oxigraph'
roxut Document Unit Tests Roxygen-Style
roxy.shinylive A 'roxygen2' Extension for 'Shinylive'
roxygen2 In-Line Documentation for R
roxygen2md 'Roxygen' to 'Markdown'
roxyglobals 'Roxygen2' Global Variable Declarations
roxylint Lint 'roxygen2'-Generated Documentation
roxytest Various Tests with 'roxygen2'
roxytypes Typed Parameter Tags for Integration with
'roxygen2'
rpact Confirmatory Adaptive Clinical Trial Design and
Analysis
rpaleoclim Download Paleoclimate Data from 'PaleoClim'
rpanel Simple Interactive Controls for R using the
'tcltk' Package
rpart Recursive Partitioning and Regression Trees
rpart.LAD Least Absolute Deviation Regression Trees
rpart.plot Plot 'rpart' Models: An Enhanced Version of
'plot.rpart'
rpartScore Classification Trees for Ordinal Responses
rpc Ridge Partial Correlation
rpca RobustPCA: Decompose a Matrix into Low-Rank and
Sparse Components
rpcss Constitution of Core Collections by Principal
Component Scoring Strategy
rpf Response Probability Functions
rpgconn User-Friendly PostgreSQL Connection Management
rphylopic Get Silhouettes of Organisms from PhyloPic
rpinterest Access Pinterest API
rplanes Plausibility Analysis of Epidemiological
Signals
rplec Placental Epigenetic Clock to Estimate Aging by
DNA Methylation
rplotengine R as a Plotting Engine
rpls Robust Partial Least Squares
rplum Bayesian Age-Depth Modelling of Cores Dated by
Pb-210
rpm Modeling of Revealed Preferences Matchings
rpmodel P-Model
rpms Recursive Partitioning for Modeling Survey Data
rpnf Point and Figure Package
rportfolio Portfolio Theory
rpostgis R Interface to a 'PostGIS' Database
rpql Regularized PQL for Joint Selection in GLMMs
rprime Functions for Working with 'Eprime' Text Files
rprintf Adaptive Builder for Formatted Strings
rprofile Load Both User-Global and Project-Specific R
Profile Configurations
rprojroot Finding Files in Project Subdirectories
rprojtree Create Folders and Files Structure for Data
Science Projects
rpsftm Rank Preserving Structural Failure Time Models
rptR Repeatability Estimation for Gaussian and
Non-Gaussian Data
rpyANTs An Alternative Advanced Normalization Tools
('ANTs')
rpymat Easy to Configure an Isolated 'Python'
Environment
rqPen Penalized Quantile Regression
rqcanon Canonical Quantile Regression
rqdatatable 'rquery' for 'data.table'
rqlm Modified Poisson Regression for Binary Outcome
and Related Methods
rqti Create Tests According to QTI 2.1 Standard
rqualify Qualification of R Software Installations
rquery Relational Query Generator for Data
Manipulation at Scale
rquest Hypothesis Tests for Quantiles and
Quantile-Based Measures
rquiz Interactive Quizzes as HTML Widgets
rr Statistical Methods for the Randomized Response
Technique
rr2 R2s for Regression Models
rrBLUP Ridge Regression and Other Kernels for Genomic
Selection
rrMixture Reduced-Rank Mixture Models
rrandvec Generate Random Vectors Whose Components Sum Up
to One
rrapply Revisiting Base Rapply
rrat Robust Regression with Asymmetric Heavy-Tail
Noise Distributions
rrcov Scalable Robust Estimators with High Breakdown
Point
rrcov3way Robust Methods for Multiway Data Analysis,
Applicable also for Compositional Data
rrcovHD Robust Multivariate Methods for High
Dimensional Data
rrcovNA Scalable Robust Estimators with High Breakdown
Point for Incomplete Data
rrda Ridge Redundancy Analysis for High-Dimensional
Omics Data
rredlist 'IUCN' Red List Client
rrefine r Client for OpenRefine API
rreg Visualization for Norwegian Health Quality
Registries
rregm Reparameterized Regression Models
rrepast Invoke 'Repast Simphony' Simulation Models
rres Realized Relatedness Estimation and Simulation
rriskDistributions Fitting Distributions to Given Data or Known
Quantiles
rrnni Manipulate with RNNI Tree Space
rroad Road Condition Analysis
rrobot Robust Outlier Detection for Diverse
Distributions
rrpack Reduced-Rank Regression
rrr Reduced-Rank Regression
rrscale Robust Re-Scaling to Better Recover Latent
Effects in Data
rrstools Analyzing RoboCupRescue Simulation Data
rrtable Reproducible Research with a Table of R Codes
rrum Bayesian Estimation of the Reduced
Reparameterized Unified Model with Gibbs
Sampling
rrvgo Reduce + Visualize GO
rsae Robust Small Area Estimation
rsahmi Single-Cell Analysis of Host-Microbiome
Interactions
rsample General Resampling Infrastructure
rsamplr Sampling Algorithms and Spatially Balanced
Sampling
rsatscan Tools for Running the External 'SaTScan'
Software using R Classes and Methods
rscc R Source Code Similarity Evaluation by
Variable/Function Names
rsconnect Deploy Docs, Apps, and APIs to 'Posit Connect',
'shinyapps.io', and 'RPubs'
rscontract Generic implementation of the 'RStudio'
connections contract
rscopus Scopus Database 'API' Interface
rscorecard A Method to Download Department of Education
College Scorecard Data
rsdNE Response Surface Designs with Neighbour Effects
(rsdNE)
rsdepth Ray Shooting Depth (i.e. RS Depth) Functions
for Bivariate Analysis
rsdmx Tools for Reading SDMX Data and Metadata
rsdv Synthetic Tabular Data Generation with Gaussian
Copulas
rseedcalc Estimating the Proportion of Genetically
Modified Seeds in Seedlots via Multinomial
Group Testing
rsem Robust Structural Equation Modeling with
Missing Data and Auxiliary Variables
rsf Report of Statistical Findings in 'bookdown'
rsgl An Implementation of the 'SGL' Graphics
Language
rshift Paleoecology Functions for Regime Shift
Analysis
rsi Efficiently Retrieve and Process Satellite
Imagery
rsides SIDES-Based Subgroup Search Algorithms
rsimsum Analysis of Simulation Studies Including Monte
Carlo Error
rsinaica Download Data from Mexico's Air Quality
Information System
rsixel Encoding and Decoding Sixel Images
rskey Create Custom 'Rstudio' Keyboard Shortcuts
rslp A Stemming Algorithm for the Portuguese
Language
rslurm Submit R Calculations to a 'Slurm' Cluster
rsm Response-Surface Analysis
rsmatch Matching Methods for Time-Varying Observational
Studies
rsmatrix Matrices for Repeat-Sales Price Indexes
rsnell Snell Scoring
rsocialwatcher 'Facebook Marketing API' Social Watcher
rsocsim SOCSIM
rsofun The P-Model and BiomeE Modelling Framework
rsoi Import Various Northern and Southern Hemisphere
Climate Indices
rspa Adapt Numerical Records to Fit (in)Equality
Restrictions
rspacer 'RSpace' API Wrapper
rsparkling R Interface for H2O Sparkling Water
rsparse Statistical Learning on Sparse Matrices
rspdlite R and C++ Interfaces to 'spdlite' C++ Header
Library for Logging
rspiro Implementation of Spirometry Equations
rspm 'RStudio' Package Manager
rsppfp R's Shortest Path Problem with Forbidden
Subpaths
rsprite2 Identify Distributions that Match Reported
Sample Parameters (SPRITE)
rsq R-Squared and Related Measures
rstac Client Library for SpatioTemporal Asset Catalog
rstack Stack Data Type as an 'R6' Class
rstackdeque Persistent Fast Amortized Stack and Queue Data
Structures
rstan R Interface to Stan
rstanarm Bayesian Applied Regression Modeling via Stan
rstanbdp Bayesian Deming Regression for Method
Comparison
rstanemax Emax Model Analysis with 'Stan'
rstantools Tools for Developing R Packages Interfacing
with 'Stan'
rstatix Pipe-Friendly Framework for Basic Statistical
Tests
rstiefel Random Orthonormal Matrix Generation and
Optimization on the Stiefel Manifold
rstpm2 Smooth Survival Models, Including Generalized
Survival Models
rstream Streams of Random Numbers
rstudio.prefs Set 'RStudio' Preferences
rstudioapi Safely Access the RStudio API
rstudiothemes Create 'RStudio' Themes from Visual Studio
Code, Positron and 'TextMate' Themes
rsubgroup Subgroup Discovery and Analytics
rsurface Design of Rotatable Central Composite
Experiments and Response Surface Analysis
rsurv Random Generation of Survival Data
rsurveycto Interact with Data on 'SurveyCTO'
rsurvstat Download Infectious Disease Data from
'SurvStat' (Robert Koch Institute)
rsvd Randomized Singular Value Decomposition
rsvddpd Robust Singular Value Decomposition using
Density Power Divergence
rsvg Render SVG Images into PDF, PNG, (Encapsulated)
PostScript, or Bitmap Arrays
rswipl Embed 'SWI'-'Prolog'
rsyncrosim The R Interface to 'SyncroSim'
rsyntax Extract Semantic Relations from Text by
Querying and Reshaping Syntax
rsynthbio Synthesize Bio API Wrapper
rsyslog Interface to the 'syslog' System Logger
rt Interface to the 'Request Tracker' API
rt.test Robustified t-Test
rt3 Tic-Tac-Toe Package for R
rtForecastEval Evaluate the Discrepancy Between Two Real-Time
Updated Probabilistic Forecasts
rtables Reporting Tables
rtables.officer Exporting Tools for 'rtables'
rtabulator R Bindings for 'Tabulator JS'
rtdists Response Time Distributions
rtemis Machine Learning and Visualization
rtemis.a3 Amino Acid Annotation (A3) Format
rtemis.core Core Utilities for the 'rtemis' Ecosystem
rtemis.llm Large Language Models and Agentic AI
rtemps R Templates for Reproducible Data Analyses
rtern A Ternary Conditional Operator for R
rtestim Estimate the Effective Reproductive Number with
Trend Filtering
rtgstat Client for 'TGStat API'
rticles Article Formats for R Markdown
rticulate Articulatory Data Processing in R
rtiddlywiki R Interface for 'TiddlyWiki'
rtide Tide Heights
rtika R Interface to 'Apache Tika'
rtiktokads Load Data from 'tiktok Marketing API'
rtiktoken A Byte-Pair-Encoding (BPE) Tokenizer for
OpenAI's Large Language Models
rtip Inequality, Welfare and Poverty Indices and
Curves using the EU-SILC Data
rtist A Color Palette Generator
rtk Rarefaction Tool Kit
rtlr Print Right-to-Left Languages Correctly
rtmpinv Tabular Matrix Problems via Pseudoinverse
Estimation
rtmpinvi Interactive Tabular Matrix Problems via
Pseudoinverse Estimation
rtmpt Fitting (Exponential/Diffusion) RT-MPT Models
rtms R Toolkit for Mass Spectrometry
rtmsEcho Extract and Analyze EchoMS Data from Sciex Wiff
Files
rtodoist Create and Manage Todolist using 'Todoist.com'
API
rtoot Collecting and Analyzing Mastodon Data
rtop Interpolation of Data with Variable Spatial
Support
rtpcr qPCR Data Analysis
rtracklayer R interface to genome annotation files and the
UCSC genome browser
rtrees Deriving Phylogenies from Synthesis Trees
rtrek Data Analysis Relating to Star Trek
rtrend Trend Estimating Tools
rtrends Analyze Download Logs from the CRAN RStudio
Mirror
rtrim Trends and Indices for Monitoring Data
rtry Preprocessing Plant Trait Data
rts Raster Time Series Analysis
rtson Typed JSON
rtype A strong type system for R
rtypeform Interface to 'typeform' Results
rucrdtw R Bindings for the UCR Suite
rugarch Univariate GARCH Models
ruijter Technical Data Sets by Ruijter et al. (2013)
ruler Tidy Data Validation Reports
rules Model Wrappers for Rule-Based Models
rumidas Univariate GARCH-MIDAS, Double-Asymmetric
GARCH-MIDAS and MEM-MIDAS
ruminate A Pharmacometrics Data Transformation and
Analysis Tool
runDRT Run Doubly Ranked Tests
runExamplesWrapper Wrapper for 'run_examples()'
runMCMCbtadjust Runs Monte Carlo Markov Chain - With Either
'JAGS', 'nimble' or 'greta' - While Adjusting
Burn-in and Thinning Parameters
runcharter Automatically Plot, Analyse and Revises Limits
of Multiple Run Charts
runes Convert Strings to Elder Futhark Runes
runexp Softball Run Expectancy using Markov Chains and
Simulation
runjags Interface Utilities, Model Templates, Parallel
Computing Methods and Additional Distributions
for MCMC Models in JAGS
runner Running Operations for Vectors
runonce Run Once and Save Result
runstats Fast Computation of Running Statistics for Time
Series
rupturesRcpp Object-Oriented Interface for Offline
Change-Point Detection
rurality Classification and Scoring of U.S. County and
ZIP Code Rurality
rush Rapid Asynchronous and Distributed Computing
rusk Beautiful Graphical Representation of
Multiplication Tables on a Modular Circle
rust Ratio-of-Uniforms Simulation with
Transformation
rutifier Chilean Rol Unico Tributario
rutledge Real-Time PCR Data Sets by Rutledge et al.
(2004)
ruv Detect and Remove Unwanted Variation using
Negative Controls
rvHPDT Calling Haplotype-Based and Variant-Based
Pedigree Disequilibrium Test for Rare Variants
in Pedigrees
rvMF Fast Generation of von Mises-Fisher Distributed
Pseudo-Random Vectors
rvalues R-Values for Ranking in High-Dimensional
Settings
rvcheck R/Package Version Check
rvec Vectors Representing Random Variables
rversions Query 'R' Versions, Including 'r-release' and
'r-oldrel'
rvertnet Search 'Vertnet', a 'Database' of Vertebrate
Specimen Records
rvest Easily Harvest (Scrape) Web Pages
rvg R Graphics Devices for 'Office' Vector Graphics
Output
rviewgraph Animated Graph Layout Viewer
rvif Collinearity Detection using Redefined Variance
Inflation Factor and Graphical Methods
rvinecopulib High Performance Algorithms for Vine Copula
Modeling
rvisidata Wrapper for 'Visidata', an Interactive
Multitool for Tabular Data
rvkstat R Interface to API 'vk.com'
rvolleydata Extract Data from Professional Volleyball
Leagues in North America
rvtk Bindings for the Visualization Toolkit ('VTK')
rwa Perform a Relative Weights Analysis
rwalkr API to Melbourne Pedestrian Data
rwarrior R Warrior - An AI Programming Game
rwavelet Wavelet Analysis
rwc Random Walk Covariance Models
rwetools Estimating Propensity Scores (PS), PS-Based
Weights, and Effects
rwfec R Wireless, Forward Error Correction
rwhatsapp Import and Handling for 'WhatsApp' Chat Logs
rwicc Regression with Interval-Censored Covariates
rwig Wasserstein Index Generation (WIG) Model
rwisp WISP Multiple Criteria Sorting Method
rwlifetable Estimation of Life Tables Using Rolling Windows
rworkflows Test, Document, Containerise, and Deploy R
Packages
rworldmap Mapping Global Data
rworldxtra Country boundaries at high resolution.
rwstats Chinese Character Frequency in Real World
rwty R We There Yet? Visualizing MCMC Convergence in
Phylogenetics
rwunderground R Interface to Weather Underground API
rxSeq Combined Total and Allele Specific Reads
Sequencing Study
rxode2 Facilities for Simulating from ODE-Based Models
rxode2ll Log-Likelihood Functions for 'rxode2'
rxode2mrgsolvebridge Convert Models Between 'rxode2' and 'mrgsolve'
rxref Tidy Utilities for RxNorm and NDC Resolution
rxylib Import XY-Data into R
ryandexdirect Load Data From 'Yandex Direct'
rym R Interface to Yandex Metrica API
rytstat Work with 'YouTube API'
rzentra Client for the 'ZENTRA Cloud' API
rzmq R Bindings for 'ZeroMQ'
s2 Spherical Geometry Operators Using the S2
Geometry Library
s20x Functions for University of Auckland Course
STATS 201/208 Data Analysis
s2dv Seasonal to Decadal Verification
s2net The Generalized Semi-Supervised Elastic-Net
s3 Download Files from 'AWS S3'
s3.resourcer S3 Resource Resolver
s3fs 'Amazon Web Service S3' File System
s7contract 'Go'-Like Interfaces and 'Rust'-Like Traits
with 'S7'
sAIC Akaike Information Criterion for Sparse
Estimation
sBIC Computing the Singular BIC for Multiple Models
sClust R Toolbox for Unsupervised Spectral Clustering
sEparaTe Maximum Likelihood Estimation and Likelihood
Ratio Test Functions for Separable
Variance-Covariance Structures
sFFLHD Sequential Full Factorial-Based Latin Hypercube
Design
sGBJ Survival Extension of the Generalized
Berk-Jones Test
sGMRFmix Sparse Gaussian Markov Random Field Mixtures
for Anomaly Detection
sMSROC Assessment of Diagnostic and Prognostic Markers
sMTL Sparse Multi-Task Learning
sNPLS NPLS Regression with L1 Penalization
sRDA Sparse Redundancy Analysis
sRNAGenetic Analysis of Small RNA Expression Changes in
Hybrid Plants
sRdpData Strategies of Resistance Data Project
sSDR Tools Developed for Structured Sufficient
Dimension Reduction (sSDR)
sSeq Shrinkage estimation of dispersion in Negative
Binomial models for RNA-seq experiments with
small sample size
sTSD Simulate Time Series Diagnostics
sValues Measures of Sturdiness of Regression
Coefficients
saCI Stochastic Approximation Confidence Interval
for Correlation
saber Context Engineering for Large Language Model
Agents
sabre Spatial Association Between Regionalizations
sacRebleu Metrics for Assessing the Quality of Generated
Text
saccadr Extract Saccades via an Ensemble of Methods
Approach
sad Verify the Scale, Anisotropy and Direction of
Weather Forecasts
sadists Some Additional Distributions
sads Maximum Likelihood Models for Species Abundance
Distributions
sae Small Area Estimation
sae.projection Small Area Estimation Using Model-Assisted
Projection Method
sae.prop Small Area Estimation using Fay-Herriot Models
with Additive Logistic Transformation
sae2 Small Area Estimation: Time-Series Models
sae4health Small Area Estimation for Key Health and
Demographic Indicators from Household Surveys
saeBest Selecting Auxiliary Variables in Small Area
Estimation (SAE) Model
saeHB Small Area Estimation using Hierarchical
Bayesian Method
saeHB.ME Small Area Estimation with Measurement Error
using Hierarchical Bayesian Method
saeHB.ME.beta SAE with Measurement Error using HB under Beta
Distribution
saeHB.TF.beta SAE using HB Twofold Subarea Model under Beta
Distribution
saeHB.ZIB Small Area Estimation using Hierarchical
Bayesian under Zero Inflated Binomial
Distribution
saeHB.panel Small Area Estimation using Hierarchical
Bayesian Method for Rao Yu Model
saeHB.panel.beta Small Area Estimation using HB for Rao Yu Model
under Beta Distribution
saeHB.spatial Small Area Estimation Hierarchical Bayes For
Spatial Model
saeHB.twofold Hierarchical Bayes Twofold Subarea Level Model
SAE
saeHB.unit Basic Unit Level Model using Hierarchical
Bayesian Approach
saeME Small Area Estimation with Measurement Error
saePseudo Small Area Estimation using Averaging Pseudo
Area Level Model
saeRobust Robust Small Area Estimation
saeSim Simulation Tools for Small Area Estimation
saeTrafo Transformations for Unit-Level Small Area
Models
saebnocov Small Area Estimation using Empirical Bayes
without Auxiliary Variable
saeczi Small Area Estimation for Continuous Zero
Inflated Data
saeeb Small Area Estimation for Count Data
saekernel Small Area Estimation Non-Parametric Based
Nadaraya-Watson Kernel
saemix Stochastic Approximation Expectation
Maximization (SAEM) Algorithm
saens Small Area Estimation with Cluster Information
for Estimation of Non-Sampled Areas
saery Small Area Estimation for Rao and Yu Model
safe Significance Analysis of Function and
Expression
safeframe Generic Data Tagging and Validation Tool
safejoin Perform "Safe" Table Joins
safer Encrypt and Decrypt Strings, R Objects and
Files
saferDev Function and Pipeline Development
safestats Safe Anytime-Valid Inference
safetensors Safetensors File Format
safetyData Clinical Trial Data
sageR Applied Statistics for Economics and Management
with R
sakura Extension to R Serialization
salad Simple Automatic Differentiation
salem Provides Access to Salem Witchcraft Data
salesforcer An Implementation of 'Salesforce' APIs Using
Tidy Principles
salmonMSE Management Strategy Evaluation for Salmon
Species
salso Search Algorithms and Loss Functions for
Bayesian Clustering
salty Turn Clean Data into Messy Data
samadb South Africa Macroeconomic Database API
samc Spatial Absorbing Markov Chains
sameplot Consistent Plot Rendering and Saving Across
Interactive Sessions and Reports
samon Sensitivity Analysis for Missing Data
sampbias Evaluating Geographic Sampling Bias in
Biological Collections
sampcompR Comparing and Visualizing Differences Between
Surveys
sampleSelection Sample Selection Models
sampleVADIR Draw Stratified Samples from the VADIR Database
sampledatasets A Collection of Sample Datasets
sampler Sample Design, Drawing & Data Analysis Using
Data Frames
samplesize Sample Size Calculation for Various t-Tests and
Wilcoxon-Test
samplesize4surveys Sample Size Calculations for Complex Surveys
samplesizeCMH Power and Sample Size Calculation for the
Cochran-Mantel-Haenszel Test
samplesizeestimator Calculate Sample Size for Various Scenarios
samplesizelogisticcasecontrol
Sample Size and Power Calculations for
Case-Control Studies
samplex Shiny Tool for Sample Size Calculation
samplezoo Generate Samples with a Variety of Probability
Distributions
sampling Survey Sampling
samplingR Sampling and Estimation Methods
samplingVarEst Sampling Variance Estimation
samplingbook Survey Sampling Procedures
samplingin Dynamic Survey Sampling Solutions
samplr Compare Human Performance to Sampling
Algorithms
samplrData Datasets from the SAMPLING Project
sampsizeval Sample Size for Validation of Risk Models with
Binary Outcomes
samr SAM: Significance Analysis of Microarrays
sams Merge-Split Samplers for Conjugate Bayesian
Nonparametric Models
sanba Fitting Shared Atoms Nested Models via MCMC or
Variational Bayes
sand Statistical Analysis of Network Data with R,
2nd Edition
sandbox Probabilistic Numerical Modelling of Sediment
Properties
sandwich Robust Covariance Matrix Estimators
sanic Solving Ax = b Nimbly in C++
sanitizers C/C++ Source Code to Trigger Address and
Undefined Behaviour Sanitizers
sanityTracker Keeps Track of all Performed Sanity Checks
sanketphonetictranslator
Phonetic Transliteration Between Hindi and
English
sankey Illustrate the Flow of Information or Material
sankeywheel Create Dependency Wheels and Sankey Diagrams
sanon Stratified Analysis with Nonparametric
Covariable Adjustment
sansa Synthetic Data Generation for Imbalanced
Learning in 'R'
santaR Short Asynchronous Time-Series Analysis
sanzo Color Palettes Based on the Works of Sanzo Wada
sapevom Group Ordinal Method for Multiple Criteria
Decision-Making
sapfluxnetr Working with 'Sapfluxnet' Project Data
sapo Spatial Association of Different Types of
Polygon
saqgetr Import Air Quality Monitoring Data in a Fast
and Easy Way
sara4r An R-GUI for Spatial Analysis of Surface Runoff
using the NRCS-CN Method
sarima Simulation and Prediction with Seasonal ARIMA
Models
saros Semi-Automatic Reporting of Ordinary Surveys
saros.base Base Tools for Semi-Automatic Reporting of
Ordinary Surveys
sarp.snowprofile Snow Profile Analysis for Snowpack and
Avalanche Research
sarp.snowprofile.pyface
'python' Modules from Snowpack and Avalanche
Research
sars Fit and Compare Species-Area Relationship
Models Using Multimodel Inference
sarsop Approximate POMDP Planning Software
sas7bdat sas7bdat Reverse Engineering Documentation
sasLM 'SAS' Linear Model
sasif 'SAS' IF Style Data Step Logic for Data Tables
sasquatch Use 'SAS', R, and 'quarto' Together
sasr 'SAS' Interface
sass Syntactically Awesome Style Sheets ('Sass')
sassy Makes 'R' Easier for Everyone
satdad Sensitivity Analysis Tools for Dependence and
Asymptotic Dependence
sate Scientific Analysis of Trial Errors (SATE)
satellite Handling and Manipulating Remote Sensing Data
satin Visualisation and Analysis of Ocean Data
Derived from Satellites
satres Grouping Satellite Bands by Spectral and
Spatial Resolution
savonliquide Accessibility Toolbox for 'R' Users
savvyGLM Generalized Linear Models with Slab and
Shrinkage Estimators
savvyPR Savvy Parity Regression Model Estimation with
'savvyPR'
savvySh Slab and Shrinkage Linear Regression Estimation
savvyr Survival Analysis for AdVerse Events with
VarYing Follow-Up Times
sawnuti Comparing Sequences with Non-Uniform Time
Intervals
saws Small-Sample Adjustments for Wald Tests Using
Sandwich Estimators
sazedR Parameter-Free Domain-Agnostic Season Length
Detection in Time Series
sbd Size Biased Distributions
sbde Semiparametric Bayesian Density Estimation
sbfc Selective Bayesian Forest Classifier
sbgcop Semiparametric Bayesian Gaussian Copula
Estimation and Imputation
sbim Simulation-Based Inference using a Metamodel
for Log-Likelihood Estimator
sbl Sparse Bayesian Learning for QTL Mapping and
Genome-Wide Association Studies
sbm Stochastic Blockmodels
sbmSDP Semidefinite Programming for Fitting Block
Models of Equal Block Sizes
sboost Machine Learning with AdaBoost on Decision
Stumps
sbrl Scalable Bayesian Rule Lists Model
sbtools USGS ScienceBase Tools
sbw Stable Balancing Weights for Causal Inference
and Missing Data
sc2sc Spatial Transfer of Statistics among Spanish
Census Sections
scBSP A Fast Tool for Single-Cell Spatially Variable
Genes Identifications on Large-Scale Data
scBio Single Cell Genomics for Enhancing Cell
Composition Inference from Bulk Genomics Data
scCATCH Single Cell Cluster-Based Annotation Toolkit
for Cellular Heterogeneity
scCustomize Custom Visualizations & Functions for
Streamlined Analyses of Single Cell Sequencing
scDECO Estimating Dynamic Correlation
scDHA Single-Cell Decomposition using Hierarchical
Autoencoder
scDIFtest Item-Wise Score-Based DIF Detection
scDiffCom Differential Analysis of Intercellular
Communication from scRNA-Seq Data
scGOclust Measuring Cell Type Similarity with Gene
Ontology in Single-Cell RNA-Seq
scGate Marker-Based Cell Type Purification for
Single-Cell Sequencing Data
scINSIGHT Interpretation of Heterogeneous Single-Cell
Gene Expression Data
scISR Single-Cell Imputation using Subspace
Regression
scITD Single-Cell Interpretable Tensor Decomposition
scMappR Single Cell Mapper
scMetaTraj Metabolic State Space and Trajectory Analysis
for Single-Cell Data
scModels Fitting Discrete Distribution Models to Count
Data
scOntoMatch Aligning Ontology Annotation Across Single Cell
Datasets with 'scOntoMatch'
scPOEM Single-Cell Meta-Path Based Omic Embedding
scPairs Identifying Synergistic Gene Pairs in
Single-Cell and Spatial Transcriptomics
scPloidy Infer Ploidy of Single Cells
scR Estimate Vapnik-Chervonenkis Dimension and
Sample Complexity
scRNAstat A Pipeline to Process Single Cell RNAseq Data
scROSHI Robust Supervised Hierarchical Identification
of Single Cells
scSpatialSIM A Point Pattern Simulator for Spatial Cellular
Data
scTenifoldKnk In-Silico Knockout Experiments from Single-Cell
Gene Regulatory Networks
scTenifoldNet Construct and Compare scGRN from Single-Cell
Transcriptomic Data
sca Simple Component Analysis
scaRabee Optimization Toolkit for
Pharmacokinetic-Pharmacodynamic Models
scagnostics Compute scagnostics - scatterplot diagnostics
scalablebayesm Distributed Markov Chain Monte Carlo for
Bayesian Inference in Marketing
scaleAlign Scale Alignment for Between-Items
Multidimensional Rasch Family Models
scaledescr Descriptive, Reliability, and Inferential
Tables for Psychometric Scales and Demographic
Data
scales Scale Functions for Visualization
scalreg Scaled Sparse Linear Regression
scam Shape Constrained Additive Models
scan Single-Case Data Analyses for Single and
Multiple Baseline Designs
scanCP Deep Learning–Based Changepoint Detection with
Local Neural Models
scanstatistics Space-Time Anomaly Detection using Scan
Statistics
scapGNN Graph Neural Network-Based Framework for Single
Cell Active Pathways and Gene Modules Analysis
scape Statistical Catch-at-Age Plotting Environment
scaper Single Cell Transcriptomics-Level Cytokine
Activity Prediction and Estimation
scapesClassification User-Defined Classification of Raster Surfaces
scar Shape-Constrained Additive Regression: a
Maximum Likelihood Approach
scater Single-Cell Analysis Toolkit for Gene
Expression Data in R
scatr Create Scatter Plots with Marginal Density or
Box Plots
scatterD3 D3 JavaScript Scatterplot from R
scatterPlotMatrix `htmlwidget` for a Scatter Plot Matrix
scatterbar Scattered Stacked Bar Chart Plots
scattermore Scatterplots with More Points
scatterpie Scatter Pie Plot
scatterplot3d 3D Scatter Plot
scbursts Single Channel Bursts Analysis
sccca Single-Cell Correlation Based Cell Type
Annotation
sccic Synthetic Control Changes-in-Changes Estimator
scclust Size-Constrained Clustering
sccore Core Utilities for Single-Cell RNA-Seq
sccr The Self-Consistent, Competing Risks (SC-CR)
Algorithms
scdensity Shape-Constrained Kernel Density Estimation
scdhlm Estimating Hierarchical Linear Models for
Single-Case Designs
scdtb Single Case Design Tools
scellpam Applying Partitioning Around Medoids to Single
Cell Data with High Number of Cells
scenes Switch Between Alternative 'shiny' UIs
scenfire Post-Processing Algorithm for Integrating
Wildfire Simulations
scf Analyzing the Survey of Consumer Finances
scgwr Scalable Geographically Weighted Regression
sched Request Scheduler
schemate Schema Inference, Editing, and Validation with
'checkmate'
schematic Tidy Schema Validation for Data Frames
schemr Convert Images to Usable Color Schemes
schmear Build Structured Data Frame Subtypes
schoRsch Tools for Analyzing Factorial Experiments
schoenberg Tools for 12-Tone Musical Composition
scholar Analyse Citation Data from Google Scholar
scholid Scholarly and Academic Identifier Utilities
scholidonline Resolution, Conversion, Linking and Metadata
for Scholarly Identifiers
schoolmath Functions and Datasets for Math Used in School
schrute The Entire Transcript from the Office in Tidy
Format
schumaker Schumaker Shape-Preserving Spline
schwabr 'Schwab API' Interface
sciRmdTheme Upgraded 'Rmarkdown' Themes for Scientific
Writing
scico Colour Palettes Based on the Scientific
Colour-Maps
scicomptools Tools Developed by the NCEAS Scientific
Computing Support Team
scidesignR Data Sets from Design and Analysis of
Experiments and Observational Studies using R
scientific Two Highly Customizable 'rmarkdown' Themes for
Scientific Reports
scientoText Text & Scientometric Analytics
scifigure Visualize 'Reproducibility' and 'Replicability'
in a Comparison of Scientific Studies
scilintr Scientific Code Lint for R Analyses
scimetr Analysis of Scientific Publication Data with R
scimo Extra Recipes Steps for Dealing with Omics Data
scindex Strategic Convergence Index for Inter-Rater
Reliability
scip Interface to the SCIP Optimization Suite
sciplot Scientific Graphing Functions for Factorial
Designs
scipub Summarize Data for Scientific Publication
scistreer Maximum-Likelihood Perfect Phylogeny Inference
at Scale
scitb Provides Some Useful Functions for Making
Statistical Tables
scmSpillover Synthetic Control Method with Spillover Effects
scoper Spectral Clustering-Based Method for
Identifying B Cell Clones
scopr Read Ethoscope Data
score A Package to Score Behavioral Questionnaires
scorecard Credit Risk Scorecard
scorecardModelUtils Credit Scorecard Modelling Utils
scoredec S-Core Graph Decomposition
scorematchingad Score Matching Estimation by Automatic
Differentiation
scorepeak Peak Functions for Peak Detection in Univariate
Time Series
scoring Proper Scoring Rules
scoringRules Scoring Rules for Parametric and Simulated
Distribution Forecasts
scoringfunctions A Collection of Loss Functions for Assessing
Point Forecasts
scoringutils Utilities for Scoring and Assessing Predictions
scout Implements the Scout Method for
Covariance-Regularized Regression
scoutbaR A Spotlight 'React' Widget for 'shiny' Apps
scov Structured Covariances Estimators for Pairwise
and Spatial Covariates
scperturbR E-Statistics for Seurat Objects
scpi Synthetic Control Methods
scplot Plot Function for Single-Case Data Frames
scpoisson Single Cell Poisson Probability Paradigm
scpropreg Simplicially Constrained Regression Models for
Proportions
scqe Stability Controlled Quasi-Experimentation
scquantum Estimate Ploidy and Absolute Copy Number from
Single Cell Sequencing
scraEP Scrape the Web with Extra Power
scran Methods for Single-Cell RNA-Seq Data Analysis
scrapeR These Functions Fetch and Extract Text Content
from Specified Web Pages
scrapper Bindings to C++ Libraries for Single-Cell
Analysis
scrappy A Simple Web Scraper
screenshot Take Screenshots (Screen Capture) from R
Command
screenshotbase Client for the 'Screenshotbase' API
scregclust Reconstructing the Regulatory Programs of
Target Genes in scRNA-Seq Data
scribe Command Argument Parsing
scrime Analysis of High-Dimensional Categorical Data
Such as SNP Data
script Identify Script Name
scriptName Determine a Script's Filename from Within the
Script Itself
scriptexec Execute Native Scripts
scriptloc Get the Location of the R Script that is Being
Sourced/Executed
scriptuRs Complete Text of the LDS Scriptures
scrm Simulating the Evolution of Biological
Sequences
scrobbler Download 'Scrobbles' from 'Last.fm'
scrollrevealR Animate 'shiny' Elements when They Scroll into
View using the 'scrollrevealjs' Library
scrutiny Error Detection in Science
scrutr Scrutinizing Collections of Structured Datasets
scrypt Key Derivation Functions for R Based on Scrypt
scryr An Interface to the 'Scryfall' API
scs Splitting Conic Solver
sctransform Variance Stabilizing Transformations for Single
Cell UMI Data
scuba Diving Calculations and Decompression Models
scutr Balancing Multiclass Datasets for
Classification Tasks
scuttle Legacy Utilities for Single-Cell RNA-Seq
Analysis
sd2R Stable Diffusion Image Generation
sdPrior Scale-Dependent Hyperpriors in Structured
Additive Distributional Regression
sda Shrinkage Discriminant Analysis and CAT Score
Variable Selection
sdafilter Symmetrized Data Aggregation
sdam Social Dynamics and Complexity in the Ancient
Mediterranean
sdamr Statistics: Data Analysis and Modelling
sdbuildR Easily Build, Simulate, and Explore
Stock-and-Flow Models
sdcHierarchies Create and (Interactively) Modify Nested
Hierarchies
sdcLog Tools for Statistical Disclosure Control in
Research Data Centers
sdcMicro Statistical Disclosure Control Methods for
Anonymization of Data and Risk Estimation
sdcSpatial Statistical Disclosure Control for Spatial Data
sdcTable Methods for Statistical Disclosure Control in
Tabular Data
sde Simulation and Inference for Stochastic
Differential Equations
sdetorus Statistical Tools for Toroidal Diffusions
sdf.test Nonparametric Two Sample Test for Equality of
Spectral Densities
sdlrm Modified Skew Discrete Laplace Regression for
Integer-Valued and Paired Discrete Data
sdm Species Distribution Modelling
sdmTMB Spatial and Spatiotemporal SPDE-Based GLMMs
with 'TMB'
sdmpredictors Species Distribution Modelling Predictor
Datasets
sdmvspecies Create Virtual Species for Species Distribution
Modelling
sdprisk Measures of Risk for the Compound Poisson Risk
Process with Diffusion
sdrt Estimating the Sufficient Dimension Reduction
Subspaces in Time Series
sdsfun Spatial Data Science Complementary Features
sdstudio Companion Application for the 'surveydown'
Survey Platform
sdtm.oak SDTM Data Transformation Engine
sdtm.terminology CDISC SDTM Controlled Terminology
sdtmchecks Data Quality Checks for Study Data Tabulation
Model (SDTM) Datasets
sdtmval Validate SDTM Domains
sdwd Sparse Distance Weighted Discrimination
seacarb Seawater Carbonate Chemistry
seairmobility Mobility-Based SEAIR Epidemic Models
sealasso Standard Error Adjusted Adaptive Lasso
searchAnalyzeR Advanced Analytics and Testing Framework for
Systematic Review Search Strategies
searcher Query Search Interfaces
seas Seasonal Analysis and Graphics, Especially for
Climatology
season Seasonal Analysis of Health Data
seasonal R Interface to X-13-ARIMA-SEATS
seasonalityPlot Seasonality Variation Plots of Stock Prices and
Cryptocurrencies
seasonalview Graphical User Interface for Seasonal
Adjustment
seasonalytics Compute Seasonality Index, Seasonalized and
Deseaonalised the Time Series Data
seastests Seasonality Tests
secr Spatially Explicit Capture-Recapture
secrdesign Sampling Design for Spatially Explicit
Capture-Recapture
secret Share Sensitive Information in R Packages
secretbase Cryptographic Hash Functions and Data Encoding
secrettext Encrypt Text Using a Shifting Substitution
Cipher
secrfunc Helper Functions for Package 'secr'
secrlinear Spatially Explicit Capture-Recapture for Linear
Habitats
secsse Several Examined and Concealed States-Dependent
Speciation and Extinction
sectorgap Consistent Economic Trend Cycle Decomposition
secuTrialR Handling of Data from the Clinical Data
Management System 'secuTrial'
sedproxy Simulation of Sediment Archived Climate Proxy
Records
see Model Visualisation Toolbox for 'easystats' and
'ggplot2'
seeclickfixr Access Data from the SeeClickFix Web API
seecolor View Colors Used in R Objects in the Console
seedCCA Seeded Canonical Correlation Analysis
seededlda Seeded Sequential LDA for Topic Modeling
seedr Hydro and Thermal Time Seed Germination Models
in R
seekr Extract Matching Lines from Matching Files
seer Feature-Based Forecast Model Selection
seewave Sound Analysis and Synthesis
segMGarch Multiple Change-Point Detection for
High-Dimensional GARCH Processes
segRDA Modeling Non-Continuous Linear Responses of
Ecological Data
segclust2d Bivariate Segmentation/Clustering Methods and
Tools
segen Sequence Generalization Through Similarity
Network
segmag Determine Event Boundaries in Event
Segmentation Experiments
segmenTier Similarity-Based Segmentation of
Multidimensional Signals
segmented Regression Models with Break-Points /
Change-Points Estimation (with Possibly Random
Effects)
segmentr Segment Data With Maximum Likelihood
segmetric Metrics for Assessing Segmentation Accuracy for
Geospatial Data
segregation Entropy-Based Segregation Indices
segregatr Segregation Analysis for Variant Interpretation
segtest Tests for Segregation Distortion in Polyploids
seguid Sequence Globally Unique Identifier (SEGUID)
Checksums
sehrnett A Very Nice Interface to 'WordNet'
seine Semiparametric Ecological Inference
seinfitR Modeling the Relationship Between Nematode
Densities and Plant Growth
seirMFG Mean-Field Game Equilibrium for SEIR Epidemics
on Networks
seismic Predict Information Cascade by Self-Exciting
Point Process
seismicRoll Fast Rolling Functions for Seismology using
'Rcpp'
sejmRP An Information About Deputies and Votings in
Polish Diet from Seventh to Eighth Term of
Office
selcorr Post-Selection Inference for Generalized Linear
Models
selectMeta Estimation of Weight Functions in Meta Analysis
selectTWFE Model Selection Between TWFE and ETWFE
selectapref Analysis of Field and Laboratory Foraging
selection.index Analysis of Selection Index in Plant Breeding
selectiongain A Tool for Calculation and Optimization of the
Expected Gain from Multi-Stage Selection
selectiveInference Tools for Post-Selection Inference
selectr Translate CSS Selectors to XPath Expressions
selectspm Select Point Pattern Models Based on Minimum
Contrast, AIC and Goodness of Fit
selenider Concise, Lazy and Reliable Wrapper for
'chromote' and 'selenium'
selenium Low-Level Browser Automation Interface
selfingTree Genotype Probabilities in Intermediate
Generations of Inbreeding Through Selfing
seliNDRIx Construction of Selection Index
sem Structural Equation Models
semEff Automatic Calculation of Effects for Piecewise
Structural Equation Models
semEffect Structural Equation Model Effect Analysis and
Visualization
semPlot Path Diagrams and Visual Analysis of Various
SEM Packages' Output
semPower Power Analyses for SEM
semTests Robust Test Statistics for Structural Equation
Models
semTools Useful Tools for Structural Equation Modeling
semantic.assets Assets for 'shiny.semantic'
semantic.dashboard Dashboard with Fomantic UI Support for Shiny
semanticfa Semantic Factor Analysis of Language Model
Embeddings
semaphore Shared Memory Atomic Operations
semboottools Bootstrapping Helpers for Structural Equation
Modelling
semdrw 'SEM Shiny'
semds Structural Equation Multidimensional Scaling
semfindr Influential Cases in Structural Equation
Modeling
semgram Extracting Semantic Motifs from Textual Data
semhelpinghands Helper Functions for Structural Equation
Modeling
semiArtificial Generator of Semi-Artificial Data
semicmprskcoxmsm Use Inverse Probability Weighting to Estimate
Treatment Effect for Semi Competing Risks Data
semicontMANOVA Multivariate ANalysis of VAriance with Ridge
Regularization for Semicontinuous
High-Dimensional Data
semidist Measure Dependence Between Categorical and
Continuous Variables
seminr Building and Estimating Structural Equation
Models
seminrExtras Conduct Additional Modeling and Analysis for
'seminr'
semlbci Likelihood-Based Confidence Interval in
Structural Equation Models
semlrtp Likelihood Ratio Test P-Values for Structural
Equation Models
semmcci Monte Carlo Confidence Intervals in Structural
Equation Modeling
semnar Constructing and Interacting with Databases of
Presentations
semnova Latent Repeated Measures ANOVA
semptools Customizing Structural Equation Modelling Plots
semsfa Semiparametric Estimation of Stochastic
Frontier Models
semtree Recursive Partitioning for Structural Equation
Models
semver 'Semantic Versioning V2.0.0' Parser
senatebR Collect Data from the Brazilian Federal Senate
Open Data API
sendgridr Mail Sender Using 'Sendgrid' Service
sendigR Enable Cross-Study Analysis of 'CDISC' 'SEND'
Datasets
sendmailR Send Email Using R
sensR Thurstonian Models for Sensory Discrimination
sense Automatic Stacked Ensemble for Regression Tasks
senseR Proxy Indicator Diagnostic Tool for Analytical
and Policy Use
sensemakr Sensitivity Analysis Tools for Regression
Models
senseweight Sensitivity Analysis for Weighted Estimators
sensiPhy Sensitivity Analysis for Comparative Methods
sensibo.sky Access to 'Sensibo Sky' API V2 for Air
Conditioners Remote Control
sensitivity Global Sensitivity Analysis of Model Outputs
and Importance Measures
sensitivity2x2xk Sensitivity Analysis for 2x2xk Tables in
Observational Studies
sensitivityIxJ Exact Nonparametric Sensitivity Analysis for I
by J Contingency Tables
sensitivityfull Sensitivity Analysis for Full Matching in
Observational Studies
sensitivitymult Sensitivity Analysis for Observational Studies
with Multiple Outcomes
sensitivitymv Sensitivity Analysis in Observational Studies
sensitivitymw Sensitivity Analysis for Observational Studies
Using Weighted M-Statistics
sensmediation Parametric Estimation and Sensitivity Analysis
of Direct and Indirect Effects
sensobol Computation of Variance-Based Sensitivity
Indices
sensortowerR Interface to 'Sensor Tower' Mobile App
Intelligence API
sensory Simultaneous Model-Based Clustering and
Imputation via a Progressive
Expectation-Maximization Algorithm
senstrat Sensitivity Analysis for Stratified
Observational Studies
sentencepiece Text Tokenization using Byte Pair Encoding and
Unigram Modelling
sentiment.ai Simple Sentiment Analysis Using Deep Learning
sentimentr Calculate Text Polarity Sentiment
sentometrics An Integrated Framework for Textual Sentiment
Time Series Aggregation and Prediction
sentopics Tools for Joint Sentiment and Topic Analysis of
Textual Data
sentryR Send Errors and Messages to Sentry
separationplot Separation Plots
sepkoski Sepkoski's Fossil Marine Animal Genera
Compendium
seq2R Simple Method to Detect Compositional Changes
in Genomic Sequences
seqDesign Simulation and Group Sequential Monitoring of
Randomized Two-Stage Treatment Efficacy Trials
with Time-to-Event Endpoints
seqHMM Mixture Hidden Markov Models for Social
Sequence Data and Other Multivariate,
Multichannel Categorical Time Series
seqLogo Sequence logos for DNA sequence alignments
seqSHP Building Sequences from SHP Waves
seqgendiff RNA-Seq Generation/Modification for Simulation
seqhandbook Miscellaneous Tools for Sequence Analysis
seqimpute Imputation of Missing Data in Sequence Analysis
seqinr Biological Sequences Retrieval and Analysis
seqmagick Sequence Manipulation Utilities
seqminer Efficiently Read Sequence Data (VCF Format, BCF
Format, METAL Format and BGEN Format) into R
seqmon Group Sequential Design Class for Clinical
Trials
seqtest Sequential Triangular Test
seqtrie Radix Tree and Trie-Based String Distances
sequenceR A Simple Sequencer for Data Sonification
sequential.pops Sequential Analysis of Biological Population
Sizes
sequoia Pedigree Inference from SNPs
seqwrap Item-by-Item Iterative Model Fitting
serad Standardized Economic Reporting and Automated
Dynamic Writing / Synthèse d'Écrits Avec des
Règles Automatisées et Dynamiques
sergeant Tools to Transform and Query Data with Apache
Drill
serial The Serial Interface Package
seriation Infrastructure for Ordering Objects Using
Seriation
serieshaz Series System Distributions from Dynamic
Failure Rate Components
serieslcb Lower Confidence Bounds for Binomial Series
System
serocalculator Estimating Infection Rates from Serological
Data
serodynamics Modeling Longitudinal Antibody Responses to
Infection
serofoi Bayesian Estimation of the Force of Infection
from Serological Data
seroreconstruct Reconstructing Antibody Dynamics to Estimate
the Risk of Influenza Virus Infection
serosv Model Infectious Disease Parameters from
Serosurveys
serp Smooth Effects on Response Penalty for CLM
serpstatr 'Serpstat' API Wrapper
serrsBayes Bayesian Modelling of Raman Spectroscopy
servr A Simple HTTP Server to Serve Static Files or
Dynamic Documents
sessioncheck Checks Session Status
sessioninfo R Session Information
set Set Operation
setRNG Set (Normal) Random Number Generator and Seed
setariaviridis Field-Collected Data of Green Foxtail
setartree SETAR-Tree - A Novel and Accurate Tree
Algorithm for Global Time Series Forecasting
sets Sets, Generalized Sets, Customizable Sets and
Intervals
settings Software Option Settings Manager for R
settingsSync 'Rstudio' Addin to Sync Settings and Keymaps
setweaver Building Sets of Variables in a Probabilistic
Framework
setwidth Automatically Set the Width Option on Terminal
Emulators
sevenbridges2 The 'Seven Bridges Platform' API Client
sever Customise 'Shiny' Disconnected Screens and
Error Messages
sewage A Light-Weight Data Pipelining Tool
sf Simple Features for R
sfReapportion Reapportion Data from One Geography to Another
sfa Stochastic Frontier Analysis
sfaR Stochastic Frontier Analysis Routines
sfadv Advanced Methods for Stochastic Frontier
Analysis
sfarrow Read/Write Simple Feature Objects ('sf') with
'Apache' 'Arrow'
sfc Substance Flow Computation
sfcentral Spatial Centrality and Dispersion Statistics
sfclust Bayesian Spatial Functional Clustering
sfcr Simulate Stock-Flow Consistent Models
sfcurve 2x2, 3x3 and Nxn Space-Filling Curves
sfd Space-Filling Design Library
sfdct Constrained Triangulation for Simple Features
sfdep Spatial Dependence for Simple Features
sffdr Surrogate Functional False Discovery Rates for
Genome-Wide Association Studies
sfheaders Converts Between R Objects and Simple Feature
Objects
sfhelper Repair Functions for 'sf' Package Objects
sfhotspot Hot-Spot Analysis with Simple Features
sfinx Straightforward Filtering Index for AP-MS Data
Analysis (SFINX)
sfislands Streamlines the Process of Fitting Areal
Spatial Models
sfnetworks Tidy Geospatial Networks
sfsmisc Utilities from 'Seminar fuer Statistik' ETH
Zurich
sft Functions for Systems Factorial Technology
Analysis of Data
sftime Classes and Methods for Simple Feature Objects
that Have a Time Column
sftpR Robust SFTP Interface Using 'curl'
sftrack Modern Classes for Tracking and Movement Data
sg 'SendGrid' Email API Client
sgPLS Sparse Group Partial Least Square Methods
sgapi Aid Querying 'nomis' and 'Office for National
Statistics Open Geography' APIs
sgboost Sparse-Group Boosting
sgd Stochastic Gradient Descent for Scalable
Estimation
sgdGMF Estimation of Generalized Matrix Factorization
Models via Stochastic Gradient Descent
sgee Stagewise Generalized Estimating Equations
sgeostat An Object-Oriented Framework for Geostatistical
Modeling in S+
sglasso Lasso Method for RCON(V,E) Models
sglg Fitting Semi-Parametric Generalized log-Gamma
Regression Models
sglr Sequential Generalized Likelihood Ratio
Decision Boundaries Proposed by Shih, Lai,
Heyse and Chen (2010, <doi:10.1002/Sim.4036>)
sgmean Trimmed Mean Compatible with 'Statgraphics'
Method
sgmodel Solves a Generic Stochastic Growth Model with a
Representative Agent
sgo Simple Geographical Operations (with OSGB36)
sgof Multiple Hypothesis Testing
sgolay Efficient Savitzky-Golay Filtering
sgplot Graphic Styles and Colours for Scottish
Government Plots
sgpv Calculate Second-Generation p-Values and
Associated Measures
sgr Sample Generation by Replacement
sgraph Network Visualization Using 'sigma.js'
sgs Sparse-Group SLOPE: Adaptive Bi-Level Selection
with FDR Control
sgsR Structurally Guided Sampling
sgstar Seasonal Generalized Space Time Autoregressive
(S-GSTAR) Model
sgt Skewed Generalized T Distribution Tree
shades Simple Colour Manipulation
shadowVIMP Covariate Selection Based on VIMP
Permutation-Like Testing
shadowr Selenium Plugin to Manage Multi Level Shadow
Elements on Web Page
shadowtext Shadow Text Grob and Layer
shannon Computation of Entropy Measures and Relative
Loss
shape Functions for Plotting Graphical Shapes, Colors
shapeNA M-Estimation of Shape for Data with Missing
Values
shapeR Collection and Analysis of Otolith Shape Data
shapefiles Read and Write ESRI Shapefiles
shapes Statistical Shape Analysis
shapley Weighted Mean SHAP and CI for Robust Feature
Assessment in ML Grid
shapper Wrapper of Python Library 'shap'
shapr Prediction Explanation with Dependence-Aware
Shapley Values
shapviz SHAP Visualizations
shar Species-Habitat Associations
shard Deterministic, Zero-Copy Parallel Execution for
R
sharp Stability-enHanced Approaches using Resampling
Procedures
sharpData Data Sharpening
sharpPen Penalized Data Sharpening for Local Polynomial
Regression
sharpeRratio Moment-Free Estimation of Sharpe Ratios
sharpshootR A Soil Survey Toolkit
sharx Models and Data Sets for the Study of
Species-Area Relationships
shattering Estimate the Shattering Coefficient for a
Particular Dataset
shazam Immunoglobulin Somatic Hypermutation Analysis
shellgame The Shell Game - Audit Geographic Data
Transformations
shelltrace Bivalve Growth and Trace Element Accumulation
Model
shelter Support for Secure API Key Management
sherlock Graphical Displays for Structured Problem
Solving and Diagnosis
shewhartr Statistical Process Control with
Tidyverse-Native Workflows
shidashi A Shiny Dashboard Template Modular System with
Chat Bot Support
shide Date/Time Classes Based on Jalali Calendar
shiftR Fast Enrichment Analysis via Circular
Permutations
shinipsum Lorem-Ipsum-Like Helpers for Fast Shiny
Prototyping
shiny Web Application Framework for R
shiny.blueprint Palantir's 'Blueprint' for 'Shiny' Apps
shiny.destroy Create Destroyable Modules in 'Shiny'
shiny.emptystate Empty State Components for 'Shiny'
shiny.exe Launch a Shiny Application without Opening R or
RStudio
shiny.i18n Shiny Applications Internationalization
shiny.ollama R 'shiny' Interface for Chatting with Large
Language Models Offline on Local with 'ollama'
shiny.react Tools for Using React in Shiny
shiny.router Basic Routing for Shiny Web Applications
shiny.semantic Semantic UI Support for Shiny
shiny.tailwind 'TailwindCSS' for Shiny Apps
shiny.telemetry 'Shiny' App Usage Telemetry
shiny.webawesome 'shiny' Bindings for 'Web Awesome' Components
shiny2docker Generate Dockerfiles for 'Shiny' Applications
shinyAce Ace Editor Bindings for Shiny
shinyBS Extra Twitter Bootstrap Components for Shiny
shinyCLT Central Limit Theorem 'shiny' Application
shinyChakraSlider Combined Slider and Numeric Input for 'Shiny'
shinyChakraUI A Wrapper of the 'React' Library 'Chakra UI'
for 'Shiny'
shinyChatR R Shiny Chat Module
shinyCohortBuilder Modular Cohort-Building Framework for
Analytical Dashboards
shinyCox Create 'shiny' Applications for Cox
Proportional Hazards Models
shinyCyJS Create Interactive Network Visualizations in R
and 'shiny'
shinyDND Shiny Drag-n-Drop
shinyDTC Simple Dynamic Timer Control
shinyDatetimePickers Some Datetime Pickers for 'Shiny'
shinyEditor 'Ace' and 'Monaco' Editors Bindings for 'shiny'
Application
shinyEffects Customize Your Web Apps with Fancy Effects
shinyExprPortal A Configurable 'shiny' Portal for Sharing
Analysis of Molecular Expression Data
shinyFeedback Display User Feedback in Shiny Apps
shinyFiles A Server-Side File System Viewer for Shiny
shinyGizmo Custom Components for Shiny Applications
shinyGovstyle Custom Gov Style Inputs for Shiny
shinyHeatmaply Deploy 'heatmaply' using 'shiny'
shinyHugePlot Efficient Plotting of Large-Sized Data
shinyIRT Item Response Theory Analysis with a 'shiny'
Application
shinyInvoice Shiny App - Generate a Pdf Invoice with
'Rmarkdown'
shinyKGode An Interactive Application for ODE Parameter
Inference Using Gradient Matching
shinyKnobs A Collection of Knob Inputs for 'shiny'
shinyLP Bootstrap Landing Home Pages for Shiny
Applications
shinyLottie Seamlessly Integrate 'Lottie' Animations into
'shiny' Applications
shinyML Compare Supervised Machine Learning Models
Using Shiny App
shinyMatrix Shiny Matrix Input Field
shinyMergely Compare and Merge Two Files with a 'Shiny' App
shinyMixR Interactive 'shiny' Dashboard for 'nlmixr2'
shinyMobile Mobile Ready 'shiny' Apps with Standalone
Capabilities
shinyMonacoEditor The 'Monaco' Editor in 'Shiny'
shinyNORRRM The Ultimate Igneous Norm
shinyNextUI 'HeroUI' 'React' Template for 'shiny' Apps
shinyNotes Shiny Module for Taking Free-Form Notes
shinyOAuth Provider-Agnostic OAuth Authentication for
'shiny' Applications
shinyPredict Predictions using Shiny
shinyQueryBuilder Construct Complex Filtering Queries in 'Shiny'
shinyRGL Shiny Wrappers for RGL
shinyRadioMatrix Create a Matrix with Radio Buttons
shinyRatings An Intuitive Way of Providing Star Rating in a
'shiny' App
shinySbm 'shiny' Application to Use the Stochastic Block
Model
shinySearchbar Shiny Searchbar - An Input Widget for
Highlighting Text and More
shinySelect A Wrapper of the 'react-select' Library
shinyStep User-Editable R Functions in 'Shiny' Apps with
a Step Debugger
shinyStorePlus Secure in-Browser and Database Storage for
'shiny' Inputs, Outputs, Views and User Likes
shinyTempSignal Explore Temporal and Other Phylogenetic Signals
shinyTime A Time Input Widget for Shiny
shinyTimer Customizable Timer for 'shiny' Applications
shinyToastify Pretty Notifications for 'Shiny'
shinyTree jsTree Bindings for Shiny
shinyWGD 'Shiny' Application for Whole Genome
Duplication Analysis
shinyWidgets Custom Inputs Widgets for Shiny
shinyXYpad XY Controller for 'Shiny'
shinyaframe 'WebVR' Data Visualizations with 'RStudio
Shiny' and 'Mozilla A-Frame'
shinyalert Easily Create Pretty Popup Messages (Modals) in
'Shiny'
shinyanimate Animation for 'shiny' Elements
shinyauthr 'Shiny' Authentication Modules
shinybody An Interactive Anatomography Widget for 'shiny'
shinybrms Graphical User Interface ('shiny' App) for
'brms'
shinybrowser Find Out Information About a User's Web Browser
in 'Shiny'
shinybusy Busy Indicators and Notifications for 'Shiny'
Applications
shinychat Chat UI Component for 'shiny'
shinycroneditor 'shiny' Cron Expression Input Widget
shinycssloaders Add Loading Animations to a 'shiny' Output
While It's Recalculating
shinycustomloader Custom Loader for Shiny Outputs
shinydashboard Create Dashboards with 'Shiny'
shinydashboardPlus Add More 'AdminLTE2' Components to
'shinydashboard'
shinydataviewer Reusable Data Viewer Module for 'shiny'
shinydbauth Simple Authentification for 'shiny'
Applications
shinydisconnect Show a Nice Message When a 'Shiny' App
Disconnects or Errors
shinydrive File Sharing Shiny Module
shinyds 'Shiny' Bindings for Designsystemet Components
shinyfa Analyze the File Contents of 'shiny'
Directories
shinyfilter Use Interdependent Filters on Table Columns in
Shiny Apps
shinyfilters Create 'shiny' Inputs from Vectors,
'data.frames', or any R Object
shinyfullscreen Display 'HTML' Elements on Full Screen in
'Shiny' Apps
shinyglide Glide Component for Shiny Applications
shinyhelper Easily Add Markdown Help Files to 'shiny' App
Elements
shinyjqui 'jQuery UI' Interactions and Effects for Shiny
shinyjs Easily Improve the User Experience of Your
Shiny Apps in Seconds
shinykanban Create Kanban Board in Shiny Applications
shinylight Web Interface to 'R' Functions
shinylive Run 'shiny' Applications in the Browser
shinyloadtest Load Test Shiny Applications
shinylogs Record Everything that Happens in a 'Shiny'
Application
shinymanager Authentication Management for 'Shiny'
Applications
shinymaterial Implement Material Design in Shiny Applications
shinymeta Export Domain Logic from Shiny using
Meta-Programming
shinymgr A Framework for Building, Managing, and
Stitching 'shiny' Modules into Reproducible
Workflows
shinymodels Interactive Assessments of Models
shinymrp Interface for Multilevel Regression and
Poststratification
shinyobjects Access Reactive Data Interactively
shinypanel Shiny Control Panel
shinypayload Accept POST Data and URL Parameters in 'shiny'
(Same-Port Integration)
shinyphaser An Interface to the 'Phaser.js' Game Framework
shinypivottabler Shiny Module to Create Pivot Tables
shinyproxyLogs Tools for Analyzing 'ShinyProxy' Containers
Logs
shinyquiz Create Interactive Quizzes in 'shiny'
shinyr Data Insights Through Inbuilt R Shiny App
shinyrecipes Gadget to Use the Data Preprocessing 'recipes'
Package Interactively
shinyreprex Reproducible Code for 'Shiny' Objects
shinyscholar A Template for Creating Reproducible 'shiny'
Applications
shinyscreenshot Capture Screenshots of Entire Pages or Parts of
Pages in 'Shiny'
shinyseo Search Engine Optimization, Social Metadata,
and Site Verification Helpers for 'Shiny' Apps
shinystan Interactive Visual and Numerical Diagnostics
and Posterior Analysis for Bayesian Models
shinystate Customization of Shiny Bookmarkable State
shinytest Test Shiny Apps
shinytest2 Testing for Shiny Applications
shinytesters Update 'Shiny' Inputs when using testServer()
shinythemes Themes for Shiny
shinytitle Update Browser Window Title in 'shiny' Session
shinytoastr Notifications from 'Shiny'
shinyvalidate Input Validation for Shiny Apps
shopifyadsR Get 'Shopify' Ads Data via the 'Windsor.ai' API
shoppingwords Text Processing Tools for Turkish E-Commerce
Data
shoredate Shoreline Dating Coastal Stone Age Sites
shorm Detect the Shape of Dose-Response Curves
shortIRT Procedures Based on Item Response Theory Models
for the Development of Short Test Forms
shortcuts Useful Shortcuts to Interact with 'RStudio'
Scripts
shortr Develop Concise but Comprehensive Shortened
Versions of Psychometric Instruments
shorts Short Sprints
shortuuid Generate and Translate Standard UUIDs
shotGroups Analyze Shot Group Data
showimage Show an Image on an 'R' Graphics Device
showtext Using Fonts More Easily in R Graphs
showtextdb Font Files for the 'showtext' Package
shp2graph Convert a 'SpatialLinesDataFrame' -Class Object
to an 'igraph'-Class Object
shrink Global, Parameterwise and Joint Shrinkage
Factor Estimation
shrinkDSM Efficient Bayesian Inference for Dynamic
Survival Models with Shrinkage
shrinkGPR Scalable Gaussian Process Regression with
Hierarchical Shrinkage Priors
shrinkTVP Efficient Bayesian Inference for Time-Varying
Parameter Models with Shrinkage
shrinkTVPVAR Efficient Bayesian Inference for TVP-VAR-SV
Models with Shrinkage
shrinkem Approximate Bayesian Regularization for
Parsimonious Estimates
shroomDK Accessing the Flipside Crypto ShroomDK API
shuffle The Shuffle Estimator for Explainable Variance
shuffleCI Confidence Intervals Compared via Shuffling
shutterplot The R Shutter Plot Package
sicegar Analysis of Single-Cell Viral Growth Curves
sicher Runtime Type Checking
siconvr Fetch Data from Plataforma +Brasil (SICONV)
sicure Single-Index Mixture Cure Models
sidier Substitution and Indel Distances to Infer
Evolutionary Relationships
sidrar An Interface to IBGE's SIDRA API
siebanxicor Query Data Series from Bank of Mexico
siera Generate Analysis Results Programmes Using ARS
Metadata
sievePH Sieve Analysis Methods for Proportional Hazards
Models
sievetest Laboratory Sieve Test Reporting Functions
sig Print Function Signatures
sigInt Estimate the Parameters of a Discrete
Crisis-Bargaining Game
sigclust Statistical Significance of Clustering
siggenes Multiple Testing using SAM and Efron's
Empirical Bayes Approaches
sigmajs Interface to 'Sigma.js' Graph Visualization
Library
sigminer Extract, Analyze and Visualize Mutational
Signatures for Genomic Variations
sigmoid Sigmoid Functions for Machine Learning
signal Signal Processing
signalHsmm Predict Presence of Signal Peptides
signatureSearch Environment for Gene Expression Searching
Combined with Functional Enrichment Analysis
signed.backbones Extract the Signed Backbones of Weighted
Networks
signibox Statistical Significance Marks on Boxplots
signnet Methods to Analyse Signed Networks
signs Insert Proper Minus Signs
sigora Signature Overrepresentation Analysis
sigr Succinct and Correct Statistical Summaries for
Reports
sigugr Workflow for Geographic Data
siie Superior Identification Index and Its
Extensions
siland Spatial Influence of Landscape
silicate Common Forms for Complex Hierarchical and
Relational Data Structures
silp Conditional Process Analysis (CPA) via SEM
Approach
silviculture Utility Functions for Forest Inventory and
Silviculture
sim.BA Simulation-Based Bias Analysis for
Observational Studies
sim2Dpredictr Simulate Outcomes Using Spatially Dependent
Design Matrices
simBKMRdata Helper Functions for Bayesian Kernel Machine
Regression
simCAT Implements Computerized Adaptive Testing
Simulations
simDAG Simulate Data from a (Time-Dependent) Causal
DAG
simDNAmixtures Simulate Forensic DNA Mixtures
simET Tools for Simulation of Evapotranspiration of
Field Crops and Soil Water Balance
simEd Simulation Education
simExam Generate Simulated Data for IRT-Enabled Exams
simFastBOIN Fast Bayesian Optimal Interval Design for Phase
I Dose-Finding Trials
simFrame Simulation Framework
simIC Simulate and Analyze Interval- and
Mixed-Censored Survival Data
simIDM Simulating Oncology Trials using an
Illness-Death Model
simIReff Stochastic Simulation for Information Retrieval
Evaluation: Effectiveness Scores
simITS Analysis via Simulation of Interrupted Time
Series (ITS) Data
simMSM Simulation of Event Histories for Multi-State
Models
simMetric Metrics (with Uncertainty) for Simulation
Studies that Evaluate Statistical Methods
simPH Simulate and Plot Estimates from Cox
Proportional Hazards Models
simPop Simulation of Complex Synthetic Data
Information
simRestore Simulate the Effect of Management Policies on
Restoration Efforts
simStateSpace Simulate Data from State Space Models
simTargetCov Data Transformation or Simulation with
Empirical Covariance Matrix
simTool Conduct Simulation Studies with a Minimal
Amount of Source Code
simaerep Detect Clinical Trial Sites Over- or
Under-Reporting Clinical Events
simboot Simultaneous Inference for Diversity Indices
simcausal Simulating Longitudinal Data with Causal
Inference Applications
simcdm Simulate Cognitive Diagnostic Model ('CDM')
Data
simcross Simulate Experimental Crosses
simctest Safe Implementation of Monte Carlo Tests
simdata Generate Simulated Datasets
simdd Simulation of Fisher Bingham and Related
Directional Distributions
simdistr Assessment of Data Trial Distributions
According to the Carlisle-Stouffer Method
simecol Simulation of Ecological (and Other) Dynamic
Systems
simer Data Simulation for Life Science and Breeding
simest Constrained Single Index Model Estimation
simevent Simulation and Analysis of Event History Data
simex SIMEX- And MCSIMEX-Algorithm for Measurement
Error Models
simfam Simulate and Model Family Pedigrees with
Structured Founders
simfinapi Accessing 'SimFin' Data
simfit Test Model Fit with Simulation
simglm Simulate Models Based on the Generalized Linear
Model
simgof Simultaneous Goodness-of-Fits Tests
simhelpers Helper Functions for Simulation Studies
simitation Simplified Simulations
simlandr Simulation-Based Landscape Construction for
Dynamical Systems
simmer Discrete-Event Simulation for R
simmer.bricks Helper Methods for 'simmer' Trajectories
simmer.plot Plotting Methods for 'simmer'
simml Single-Index Models with Multiple-Links
simmr A Stable Isotope Mixing Model
simode Statistical Inference for Systems of Ordinary
Differential Equations using Separable
Integral-Matching
simodels Flexible Framework for Developing Spatial
Interaction Models
simona Semantic Similarity on Bio-Ontologies
simphony Simulating Large-Scale, Rhythmic Data
simplace Interface to Use the Modelling Framework
'SIMPLACE'
simplanonym Consistent Anonymisation Across Datasets
simpleCache Simply Caching R Objects
simpleFDR Simple False Discovery Rate Calculation
simpleMH Simple Metropolis-Hastings MCMC Algorithm
simpleNeural An Easy to Use Multilayer Perceptron
simplePHENOTYPES Simulation of Pleiotropic, Linked and Epistatic
Phenotypes
simpleRCache Simple R Cache
simpleSetup Set Up R Source Code Files for Use on Multiple
Machines
simpleboot Simple Bootstrap Routines
simplecolors Access Color Names Using a Standardized
Nomenclature
simplegraph Simple Graph Data Types and Basic Algorithms
simplegraphdb A Simple Graph Database
simplermarkdown Simple Engine for Generating Reports using R
simpletex Mathematical Formulas and Character Recognition
simplifyEnrichment Simplify Functional Enrichment Results
simplifyNet Network Sparsification
simpowa Power Analysis and Sample Size Calculation for
Semi-Field Vector Control Trials
simpr.interaction Calculating Parameters for Simulation-Based
Regression Interaction Power Analysis
simputation Simple Imputation
simqi Simulate Quantities of Interest from Regression
Models
simr Power Analysis for Generalised Linear Mixed
Models by Simulation
simrec Simulation of Recurrent Event Data for
Non-Constant Baseline Hazard
simrel Simulation of Multivariate Linear Model Data
sims Simulate Data from R or 'JAGS' Code
simsalapar Tools for Simulation Studies in Parallel
simsem SIMulated Structural Equation Modeling
simsl Single-Index Models with a Surface-Link
simstandard Generate Standardized Data
simstudy Simulation of Study Data
simsurv Simulate Survival Data
simtrait Simulate Complex Traits from Genotypes
simtrial Clinical Trial Simulation
simts Time Series Analysis Tools
simuclustfactor Simultaneous Clustering and Factorial
Decomposition of Three-Way Datasets
simukde Simulation with Kernel Density Estimation
simulMGF Simulate SNP Matrix, Phenotype and Genotypic
Effects
simulariatools Simularia Tools for the Analysis of Air
Pollution Data
simulateDCE Simulate Data for Discrete Choice Experiments
simulator An Engine for Running Simulations
simulist Simulate Disease Outbreak Line List and
Contacts Data
sinaplot An Enhanced Chart for Simple and Truthful
Representation of Single Observations over
Multiple Classes
sinar Conditional Least Squared (CLS) Method for the
Model SINAR(1,1)
sindyr Sparse Identification of Nonlinear Dynamics
sinew Package Development Documentation and Namespace
Management
singR Simultaneous Non-Gaussian Component Analysis
singcar Comparing Single Cases to Small Samples
singleCellHaystack A Universal Differential Expression Prediction
Tool for Single-Cell and Spatial Genomics Data
singleRcapture Single-Source Capture-Recapture Models
singscore Rank-based single-sample gene set scoring
method
sinib Sum of Independent Non-Identical Binomial
Random Variables
siplab Spatial Individual-Plant Modelling
sirad Functions for Calculating Daily Solar Radiation
and Evapotranspiration
siren Hybrid FA-CFA for Controlling Acquiescence in
Restricted Factorial Solutions
sirt Supplementary Item Response Theory Models
sisVIVE Some Invalid Some Valid Instrumental Variables
Estimator
sisal Sequential Input Selection Algorithm
sisireg Sign-Simplicity-Regression-Solver
sistec Tools to Analyze 'Sistec' Datasets
sisti Real-Time PCR Data Sets by Sisti et al. (2010)
sistmr A Collection of Utility Function from the
Inserm/Inria SISTM Team
sitar Super Imposition by Translation and Rotation
Growth Curve Analysis
sitepickR Two-Level Sample Selection with Optimal Site
Replacement
siteymlgen Automatically Generate _site.yml File for 'R
Markdown'
sitmo Parallel Pseudo Random Number Generator (PPRNG)
'sitmo' Header Files
sitools Format a number to a string with SI prefix
sitree Single Tree Simulator
sitreeE Sitree Extensions
sitrep Report Templates and Helper Functions for
Applied Epidemiology
sits Satellite Image Time Series Analysis for Earth
Observation Data Cubes
sivs Stable Iterative Variable Selection
sixtyfour Humane Interface to Amazon Web Services
sizeMat Estimate Size at Sexual Maturity
sjPlot Data Visualization for Statistics in Social
Science
sjSDM Scalable Joint Species Distribution Modeling
sjdbc JDBC Driver Interface
sjlabelled Labelled Data Utility Functions
sjmisc Data and Variable Transformation Functions
sjstats Collection of Convenient Functions for Common
Statistical Computations
sjtable2df Convert 'sjPlot' HTML-Tables to R 'data.frame'
skater Utilities for SNP-Based Kinship Analysis
skedastic Handling Heteroskedasticity in the Linear
Regression Model
skeletor An R Package Skeleton Generator
skellam Densities and Sampling for the Skellam
Distribution
sketch Interactive Sketches
sketcher Pencil Sketch Effect
sketching Sketching of Data via Random Subspace
Embeddings
sketchy Create Custom Research Compendiums
skewMLRM Estimation for Scale-Shape Mixtures of
Skew-Normal Distributions
skewlmm Scale Mixture of Skew-Normal Linear Mixed
Models
skewsamp Estimate Sample Sizes for Group Comparisons
with Skewed Distributions
skewt The Skewed Student-t Distribution
skewunit Estimation and Other Tools for Skew-Unit Models
skiftiTools Tools and Operations for Reading, Writing,
Viewing, and Manipulating SKIFTI Files
skilljaR Connect to Your 'Skilljar' Data
skimr Compact and Flexible Summaries of Data
skipTrack A Bayesian Hierarchical Model that Controls for
Non-Adherence in Mobile Menstrual Cycle
Tracking
sklarsomega Measuring Agreement Using Sklar's Omega
Coefficient
skmeans Spherical k-Means Clustering
skpr Design of Experiments Suite: Generate and
Evaluate Optimal Designs
skylight A Simple Sky Illuminance Model
skytrackr A Sky Illuminance Location Tracker
slackr Send Messages, Images, R Objects and Files to
'Slack' Channels/Users
slam Sparse Lightweight Arrays and Matrices
slanter Slanted Matrices and Ordered Clustering
slap Simplified Error Handling
slash Path-Based Access and Manipulation of Nested
Lists
slasso S-LASSO Estimator for the Function-on-Function
Linear Regression
slca Structural Modeling for Multiple Latent Class
Variables
slcm Sparse Latent Class Model for Cognitive
Diagnosis
sld Estimation and Use of the Quantile-Based Skew
Logistic Distribution
sleacr Simplified Lot Quality Assurance Sampling
Evaluation of Access and Coverage (SLEAC) Tools
sleekts 4253H, Twice Smoothing
sleepr Analyse Activity and Sleep Behaviour
sleepwalk Interactively Explore Dimension-Reduced
Embeddings
sleev Semiparametric Likelihood Estimation with
Errors in Variables
slendr A Simulation Framework for Spatiotemporal
Population Genetics
slfm Fitting a Bayesian Sparse Latent Factor Model
in Gene Expression Analysis
slgf Bayesian Model Selection with Suspected Latent
Grouping Factors
slideimp Numeric Matrices K-NN and PCA Imputation
slider Sliding Window Functions
slideview Compare Raster Images Side by Side with a
Slider
slim Singular Linear Models for Longitudinal Data
slingshot Tools for ordering single-cell sequencing
slippymath Slippy Map Tile Tools
slm Stationary Linear Models
sloop Helpers for 'OOP' in R
slopes Calculate Slopes of Roads, Rivers and
Trajectories
slouch Stochastic Linear Ornstein-Uhlenbeck
Comparative Hypotheses
slowraker A Slow Version of the Rapid Automatic Keyword
Extraction (RAKE) Algorithm
slr Semi-Latin Rectangles
slurm Running and Parsing Slurm Commands
slurmR A Lightweight Wrapper for 'Slurm'
slxr Spatial-X (SLX) Models for Applied Researchers
sm Smoothing Methods for Nonparametric Regression
and Density Estimation
smaa Stochastic Multi-Criteria Acceptability
Analysis
smacof Multidimensional Scaling
smacofx Flexible Multidimensional Scaling and 'smacof'
Extensions
smacpod Statistical Methods for the Analysis of
Case-Control Point Data
smallsets Visual Documentation for Data Preprocessing
smallstuff Dr. Small's Functions
smam Statistical Modeling of Animal Movements
smartDesign Sequential Multiple Assignment Randomized Trial
Design
smarter A Collection of Modified R Functions to Make
Basic Coding More Convenient
smartmap Smartly Create Maps from R Objects
smartsheetr Access and Write 'Smartsheet' Data using the
'Smartsheet' API 2.0
smartsizer Power Analysis for a SMART Design
smartsnp Fast Multivariate Analyses of Big Genomic Data
smashr Smoothing by Adaptive Shrinkage
smatr (Standardised) Major Axis Estimation and
Testing Routines
smbdata Data from "Statistical Methods in Biology"
smbinning Scoring Modeling and Optimal Binning
smcfcs Multiple Imputation of Covariates by
Substantive Model Compatible Fully Conditional
Specification
smcure Fit Semiparametric Mixture Cure Models
smd Compute Standardized Mean Differences
smdata Data to Accompany Smithson & Merkle, 2013
smdi Perform Structural Missing Data Investigations
smdocker Build 'Docker Images' in 'Amazon SageMaker
Studio' using 'Amazon Web Service CodeBuild'
smer Sparse Marginal Epistasis Test
smerc Statistical Methods for Regional Counts
smetlite Read and Write SMET Files
smfa Stochastic Metafrontier Analysis
smfishHmrf Hidden Markov Random Field for Spatial
Transcriptomic Data
smfsb Stochastic Modelling for Systems Biology
smicd Statistical Methods for Interval-Censored Data
smidm Statistical Modelling for Infectious Disease
Management
smile Spatial Misalignment: Interpolation, Linkage,
and Estimation
smimodel Sparse Multiple Index Models for Nonparametric
Forecasting
smirnov Provides two taxonomic coefficients from E. S.
Smirnov "Taxonomic analysis" (1969) book
smlePH Sieve Maximum Full Likelihood Estimation for
the Right-Censored Proportional Hazards Model
smlmkalman Generation and Tracking of Super-Resolution
Filamentous Datasets
smmR Simulation, Estimation and Reliability of
Semi-Markov Models
smof Scoring Methodology for Ordered Factors
smoke Small Molecule Octet/BLI Kinetics Experiment
smoof Single and Multi-Objective Optimization Test
Functions
smooth Forecasting Using State Space Models
smoothHR Smooth Hazard Ratio Curves Taking a Reference
Value
smoothROCtime Smooth Time-Dependent ROC Curve Estimation
smoothSurv Survival Regression with Smoothed Error
Distribution
smoothedIPW Time-Smoothed Inverse Probability Weighting for
Repeatedly Measured Outcomes
smoothedLasso A Framework to Smooth L1 Penalized Regression
Operators using Nesterov Smoothing
smoothemplik Smoothed Empirical Likelihood
smoothic Variable Selection Using a Smooth Information
Criterion
smoothie Two-Dimensional Field Smoothing
smoothmest Smoothed M-Estimators for 1-Dimensional
Location
smoothr Smooth and Tidy Spatial Features
smoothtail Smooth Estimation of GPD Shape Parameter
smoothy Automatic Estimation of the Most Likely Drug
Combination using Smooth Algorithm
smoots Nonparametric Estimation of the Trend and Its
Derivatives in TS
smosr Acquire and Explore BEC-SMOS L4 Soil Moisture
Data in R
smotefamily A Collection of Oversampling Techniques for
Class Imbalance Problem Based on SMOTE
smovie Some Movies to Illustrate Concepts in
Statistics
smplot2 Create Standalone and Composite Plots in
'ggplot2' for Publications
smqf Statistical Methods in Quantitative Finance
smriti Automated Routing Engine for Longitudinal
Missing Data
sms Spatial Microsimulation
smsets Simple Multivariate Statistical Estimation and
Tests
smsncut Optimal Diagnostic Cutoff Selection under Scale
Mixtures of Skew-Normal Distributions
smss Datasets for Agresti and Finlay's "Statistical
Methods for the Social Sciences"
smurf Sparse Multi-Type Regularized Feature Modeling
smvgraph Various Multivariate Graphics with Variable
Choice in Shiny Apps
smvr Simple Implementation of Semantic Versioning
(SemVer)
sn The Skew-Normal and Related Distributions Such
as the Skew-t and the SUN
snQTL Spectral Network Quantitative Trait Loci
(snQTL) Analysis
snSMART Small N Sequential Multiple Assignment
Randomized Trial Methods
sna Tools for Social Network Analysis
snahelper 'RStudio' Addin for Network Analysis and
Visualization
snakecase Convert Strings into any Case
snakeplot Serpentine Plots for Long Timeline, Sequential
and Survey Data
snap Simple Neural Application
snapKrig Fast Kriging and Geostatistics on Grids with
Kronecker Covariance
snapchatadsR Get Snapchat Ads Data via the 'Windsor.ai' API
snapr Convenient Snapshot Testing Functions for
Packages
snapshot Gadget N-body cosmological simulation code
snapshot I/O utilities
snazzieR Chic and Sleek Functions for Beautiful
Statisticians
snc Strongest Neighbor Coherence
snem EM Algorithm for Multivariate Skew-Normal
Distribution with Overparametrization
snfa Smooth Non-Parametric Frontier Analysis
snha Creating Correlation Networks using St. Nicolas
House Analysis
snic Superpixel Segmentation with the Simple
Non-Iterative Clustering Algorithm
snirh.lab Convert Laboratory Water-Quality Data to
'SNIRH' Import Format
snn Stabilized Nearest Neighbor Classifier
snotelr Calculate and Visualize 'SNOTEL' Snow Data and
Seasonality
snow Simple Network of Workstations
snowFT Fault Tolerant Simple Network of Workstations
snowboot Bootstrap Methods for Network Inference
snowfall Easier Cluster Computing (Based on 'snow')
snowflakeauth Authentication Helpers for 'Snowflake'
snowflakes Random Snowflake Generator
snowquery SQL Interface to 'Snowflake', 'Redshift',
'Postgres', 'SQLite', and 'DuckDB'
snpAIMeR Assess the Diagnostic Power of Genomic Marker
Combinations
snpStats SnpMatrix and XSnpMatrix classes and methods
snplinkage Single Nucleotide Polymorphisms Linkage
Disequilibrium Visualizations
snplist Tools to Create Gene Sets
snpsettest A Set-Based Association Test using GWAS Summary
Statistics
snreg Regression with Skew-Normally Distributed Error
Term
sns Stochastic Newton Sampler (SNS)
sobol Quasi-Monte Carlo Sobol Sequence Generator
sobolnp Nonparametric Sobol Estimator with Bootstrap
Bandwidth
socceR Evaluating Sport Tournament Predictions
social Social Autocorrelation
socialSim Simulate and Analyse Social Interaction Data
socialdrift Temporal Auditing of Social Interaction
Networks
socialh Rank and Social Hierarchy for Gregarious
Animals
socialmixr Social Mixing Matrices for Infectious Disease
Modelling
socialranking Social Ranking Solutions for Power Relations on
Coalitions
socialrisk Identifying Patient Social Risk from
Administrative Health Care Data
sociome Operationalizing Social Determinants of Health
Data for Researchers
socratadata Explore Socrata Data with Ease
socviz Utility Functions and Data Sets for Data
Visualization
sodavis SODA: Main and Interaction Effects Selection
for Logistic Regression, Quadratic Discriminant
and General Index Models
sodium A Modern and Easy-to-Use Crypto Library
sofa Connector to 'CouchDB'
softImpute Matrix Completion via Iterative
Soft-Thresholded SVD
softbib Software Bibliographies for R Projects
softwareRisk Computation of Node and Path-Level Risk Scores
in Scientific Models
soilDB Soil Database Interface
soilFlux Physics-Informed Neural Networks for Soil Water
Retention Curves
soilKey Automated Soil Profile Classification per 'WRB'
2022, 'SiBCS' 5 and 'USDA' Soil Taxonomy 13
soilVAE Supervised Variational Autoencoder Regression
via 'reticulate'
soilassessment Soil Health Assessment Models for Assessing
Soil Conditions and Suitability
soilchemistry Computation of Properties Related to Soil
Chemical Environment and Nutrient Availability
soilfoodwebs Soil Food Web Analysis
soilhypfit Modelling of Soil Water Retention and Hydraulic
Conductivity Data
soilphysics Soil Physical Analysis
soiltestcorr Soil Test Correlation and Calibration
soiltexture Functions for Soil Texture Plot, Classification
and Transformation
soiltillr Analyse Soil Tillage Depth and Erosion Over
Time
soilwater Implementation of Parametric Formulas for Soil
Water Retention or Conductivity Curve
sokoban Sokoban Game
solaR Radiation and Photovoltaic Systems
solarPos Solar Position Algorithm for Solar Radiation
Applications
solartime Utilities Dealing with Solar Time Such as Sun
Position and Time of Sunrise
solidauthr Solid OIDC Client Credentials Authentication
solitude An Implementation of Isolation Forest
solrad Calculating Solar Radiation and Related
Variables Based on Location, Time and
Topographical Conditions
solrium General Purpose R Interface to 'Solr'
solvebio The Official SolveBio API Client
solvency2rfr 'EIOPA' Risk-Free Interest Rate Term Structures
for Solvency II
som Self-Organizing Map
som.nn Topological k-NN Classifier Based on
Self-Organising Maps
soma General-Purpose Optimisation with the
Self-Organising Migrating Algorithm
somaticflags Database of Somatic Flags
someMTP Some Multiple Testing Procedures
somhca Self-Organising Maps Coupled with Hierarchical
Cluster Analysis
sommer Solving Mixed Model Equations in R
sonar Fundamental Formulas for Sonar
sonicLength Estimating Abundance of Clones from DNA
Fragmentation Data
sonify Data Sonification - Turning Data into Sound
sooty Data Source Catalogues Online for Southern
Ocean Ecosystem Research
soptdmaeA Sequential Optimal Designs for Two-Colour cDNA
Microarray Experiments
soql Helps Make Socrata Open Data API Calls
sorcering Soil Organic Carbon and CN Ratio Driven
Nitrogen Modelling Framework
sorocs A Bayesian Semiparametric Approach to
Correlated ROC Surfaces
sortable Drag-and-Drop in 'shiny' Apps with 'SortableJS'
sorvi Functions for Finnish Open Data
sos Search Contributed R Packages, Sort by Package
sotkanet Sotkanet Open Data Access and Analysis
sotu United States Presidential State of the Union
Addresses
sound A Sound Interface for R
soundClass Sound Classification Using Convolutional Neural
Networks
soundecology Soundscape Ecology
soundgen Sound Synthesis and Acoustic Analysis
sourcetools Tools for Reading, Tokenizing and Parsing R
Code
sourcoise Source a Script and Cache
sov Calculate vs-SOVs and SOVs for Assemblies with
D-Dimensional Voting
sox Structured Learning in Time-Dependent Cox
Models
sp Classes and Methods for Spatial Data
sp23design Design and Simulation of Seamless Phase II-III
Clinical Trials
spANOVA Analysis of Field Trials with Geostatistics &
Spatial AR Models
spAbundance Univariate and Multivariate Spatial Modeling of
Species Abundance
spAddins A Set of RStudio Addins
spBPS Bayesian Predictive Stacking for Scalable
Geospatial Transfer Learning
spBayes Univariate and Multivariate Spatial-Temporal
Modeling
spBayesSurv Bayesian Modeling and Analysis of Spatially
Correlated Survival Data
spCF Coarse-to-Fine Spatial Modeling
spCP Spatially Varying Change Points
spDBL Dynamic Bayesian Learning for Spatiotemporal
Mechanistic Models
spData Datasets for Spatial Analysis
spDates Analysis of Spatial Gradients in Radiocarbon
Dates
spEDM Spatial Empirical Dynamic Modeling
spFFBS Spatiotemporal Propagation for Multivariate
Bayesian Dynamic Learning
spFSR Feature Selection and Ranking via Simultaneous
Perturbation Stochastic Approximation
spGARCH Spatial ARCH and GARCH Models (spGARCH)
spINAR (Semi)Parametric Estimation and Bootstrapping
of INAR Models
spMC Continuous-Lag Spatial Markov Chains
spMaps Europe SpatialPolygonsDataFrame Builder
spNNGP Spatial Regression Models for Large Datasets
using Nearest Neighbor Gaussian Processes
spNetwork Spatial Analysis on Network
spOccupancy Single-Species, Multi-Species, and Integrated
Spatial Occupancy Models
spRingsteen All Things Data and Springsteen
spStack Bayesian Geostatistics Using Predictive
Stacking
spTDyn Spatially Varying and Spatio-Temporal Dynamic
Linear Models
spThin Functions for Spatial Thinning of Species
Occurrence Records for Use in Ecological Models
spTimer Spatio-Temporal Bayesian Modelling
spaAlign Stratigraphic Plug Alignment for Integrating
Plug-Based and XRF Data
spaMM Mixed-Effect Models, with or without Spatial
Random Effects
spaa SPecies Association Analysis
spacefillr Space-Filling Random and Quasi-Random Sequences
spacemodR Workflow for Environmental Risk Assessment:
Habitat, Food Web, Dispersal, Exposure and Risk
spacesRGB Standard and User-Defined RGB Color Spaces,
with Conversion Between RGB and CIE XYZ and Lab
spacesXYZ CIE XYZ and some of Its Derived Color Spaces
spacetime Classes and Methods for Spatio-Temporal Data
spacyr Wrapper to the 'spaCy' 'NLP' Library
spada A 'shiny' Package for Data Analysis
spagmix Artificial Spatial and Spatio-Temporal
Densities on Bounded Windows
spam SPArse Matrix
spam64 64-Bit Extension of the SPArse Matrix R Package
'spam'
spanish Translate Quantities from Strings to Integer
and Back. Misc Functions on Spanish Data
spanishoddata Get Spanish Origin-Destination Data
spant MR Spectroscopy Analysis Tools
spantest Mean-Variance Spanning Tests
sparcl Perform Sparse Hierarchical Clustering and
Sparse K-Means Clustering
spareg Sparse Projected Averaged Regression
spark.sas7bdat Read in 'SAS' Data ('.sas7bdat' Files) into
'Apache Spark'
sparkavro Load Avro file into 'Apache Spark'
sparkbq Google 'BigQuery' Support for 'sparklyr'
sparkhail A 'Sparklyr' Extension for 'Hail'
sparkline 'jQuery' Sparkline 'htmlwidget'
sparklyr R Interface to Apache Spark
sparklyr.flint Sparklyr Extension for 'Flint'
sparklyr.nested A 'sparklyr' Extension for Nested Data
sparktex Generate LaTeX sparklines in R
sparkxgb Interface for 'XGBoost' on 'Apache Spark'
sparqlr A SPARQL Client for R
sparr Spatial and Spatiotemporal Relative Risk
sparrpowR Power Analysis to Detect Spatial Relative Risk
Clusters
sparseCov Sparse Covariance Estimation Based on
Thresholding
sparseDFM Estimate Dynamic Factor Models with Sparse
Loadings
sparseEigen Computation of Sparse Eigenvectors of a Matrix
sparseFLMM Functional Linear Mixed Models for Irregularly
or Sparsely Sampled Data
sparseGFM Sparse Generalized Factor Models with Multiple
Penalty Functions
sparseIndexTracking Design of Portfolio of Stocks to Track an Index
sparseLDA Sparse Discriminant Analysis
sparseLM Interface to the 'sparseLM' Levenberg-Marquardt
Library
sparseLRMatrix Represent and Use Sparse + Low Rank Matrices
sparseLTSEigen RcppEigen back end for sparse least trimmed
squares regression
sparseMVN Multivariate Normal Functions for Sparse
Covariance and Precision Matrices
sparseMatEst Sparse Matrix Estimation and Inference
sparseMatrixStats Summary Statistics for Rows and Columns of
Sparse Matrices
sparseR Variable Selection under Ranked Sparsity
Principles for Interactions and Polynomials
sparseSEM Elastic Net Penalized Maximum Likelihood for
Structural Equation Models with Network GPT
Framework
sparseSVM Solution Paths of Sparse High-Dimensional
Support Vector Machine with Lasso or
Elastic-Net Regularization
sparseVCBART Sparse Varying Coefficient BART with
Global-Local Priors"
sparsecommunity Spectral Community Detection for Sparse
Networks
sparsediff R Interface to the 'SparseDiffEngine' Sparse
Differentiation Backend
sparsediscrim Sparse and Regularized Discriminant Analysis
sparsegl Sparse Group Lasso
sparseinv Computation of the Sparse Inverse Subset
sparselink Sparse Regression for Related Problems
sparselu Sparse LU Decomposition via SuiteSparse
sparsenet Fit Sparse Linear Regression Models via
Nonconvex Optimization
sparsepca Sparse Principal Component Analysis (SPCA)
sparsepp 'Rcpp' Interface to 'sparsepp'
sparsestep SparseStep Regression
sparsesurv Forecasting and Early Outbreak Detection for
Sparse Count Data
sparsesvd Sparse Truncated Singular Value Decomposition
(from 'SVDLIBC')
sparsevar Sparse VAR (Vector Autoregression) / VECM
(Vector Error Correction Model) Estimation
sparsevb Spike-and-Slab Variational Bayes for Linear and
Logistic Regression
sparsevctrs Sparse Vectors for Use in Data Frames
sparsio I/O Operations with Sparse Matrices
sparta Sparse Tables
sparvaride Variance Identification in Sparse Factor
Analysis
spass Study Planning and Adaptation of Sample Size
spatPomp Inference for Spatiotemporal Partially Observed
Markov Processes
spate Spatio-Temporal Modeling of Large Data Using a
Spectral SPDE Approach
spatemR Generalized Spatial Autoregresive Models for
Mean and Variance
spatgeom Geometric Spatial Point Analysis
spatgraphs Graph Edge Computations for Spatial Point
Patterns
spaths Shortest Paths Between Points in Grids
spatialAtomizeR Spatial Analysis with Misaligned Data Using
Atom-Based Regression Models
spatialCatalogueViewer
A 'Shiny' Tool to Create Interactive Catalogues
for Geospatial Data
spatialCovariance Computation of Spatial Covariance Matrices for
Data on Rectangles
spatialData Spatial Datasets for Ecological Modeling
spatialEco Spatial Analysis and Modelling Utilities
spatialGE Visualization and Analysis of Spatial
Heterogeneity in Spatially-Resolved Gene
Expression
spatialRF Easy Spatial Modeling with Random Forest
spatialRegroup Iterative Spatial Regrouping of Administrative
Units by Attributive Affinity
spatialTIME Spatial Analysis of Vectra Immunoflourescent
Data
spatialising Ising Model for Spatial Data
spatialprobit Spatial Probit Models
spatialreg Spatial Regression Analysis
spatialreg.hp Hierarchical Partitioning of R2 for Spatial
Simultaneous Autoregressive Model
spatialsample Spatial Resampling Infrastructure
spatialwarnings Spatial Early Warning Signals of Ecosystem
Degradation
spatialwidget Formats Spatial Data for Use in Htmlwidgets
spatsoc Group Animal Relocation Data by Spatial and
Temporal Relationship and Measure Intragroup
Social Dynamics
spatstat Spatial Point Pattern Analysis, Model-Fitting,
Simulation, Tests
spatstat.Knet Extension to 'spatstat' for Large Datasets on a
Linear Network
spatstat.data Datasets for 'spatstat' Family
spatstat.explore Exploratory Data Analysis for the 'spatstat'
Family
spatstat.geom Geometrical Functionality of the 'spatstat'
Family
spatstat.gui Interactive Graphics Functions for the
'spatstat' Package
spatstat.linnet Linear Networks Functionality of the 'spatstat'
Family
spatstat.local Extension to 'spatstat' for Local Composite
Likelihood
spatstat.model Parametric Statistical Modelling and Inference
for the 'spatstat' Family
spatstat.random Random Generation Functionality for the
'spatstat' Family
spatstat.sparse Sparse Three-Dimensional Arrays and Linear
Algebra Utilities
spatstat.univar One-Dimensional Probability Distribution
Support for the 'spatstat' Family
spatstat.utils Utility Functions for 'spatstat'
spatsurv Bayesian Spatial Survival Analysis with
Parametric Proportional Hazards Models
spbabel Convert Spatial Data Using Tidy Tables
spbal Spatially Balanced Sampling Algorithms
spboost Gradient Boosting for Nonlinear Spatial
Autoregressive Models
spc Statistical Process Control -- Calculation of
ARL and Other Control Chart Performance
Measures
spc4sts Statistical Process Control for Stochastic
Textured Surfaces
spcadjust Functions for Calibrating Control Charts
spconf Computing Scales of Spatial Smoothing for
Confounding Adjustment
spcosa Spatial Coverage Sampling and Random Sampling
from Compact Geographical Strata
spcov Sparse Estimation of a Covariance Matrix
spcr Sparse Principal Component Regression
spd Semi Parametric Distribution
spdep Spatial Dependence: Weighting Schemes,
Statistics
spdesign Designing Stated Preference Experiments
spdgp Simulate Spatial Data Generation Processes
spdl Easier Use of 'RcppSpdlog' Functions via
Wrapper
spduration Split-Population Duration (Cure) Regression
spdynmod Spatio-Dynamic Wetland Plant Communities Model
speakeasyR Fast and Robust Multi-Scale Graph Clustering
speakr A Wrapper for the Phonetic Software 'Praat'
speaq Tools for Nuclear Magnetic Resonance (NMR)
Spectra Alignment, Peak Based Processing,
Quantitative Analysis and Visualizations
spearmanCI Jackknife Euclidean / Empirical Likelihood
Inference for Spearman's Rho
spec A Data Specification Format and Interface
speccurvieR Easy, Fast, and Pretty Specification Curve
Analysis
specieschrom The Species Chromatogram
specr Conducting and Visualizing Specification Curve
Analyses
specs Single-Equation Penalized Error-Correction
Selector (SPECS)
spect Survival Prediction Ensemble Classification
Tool
spectacles Storing, Manipulating and Analysis Spectroscopy
and Associated Data
spectator Interface to the 'Spectator Earth' API
spectr Calculate the Periodogram of a Time-Course
spectrakit Spectral Data Handling and Visualization
spectral Common Methods of Spectral Data Analysis
spectralAnomaly Detect Anomalies Using the Spectral Residual
Algorithm
spectralGP Approximate Gaussian Processes Using the
Fourier Basis
spectralR Obtain and Visualize Spectral Reflectance Data
for Earth Surface Polygons
spectrolab Class and Methods for Spectral Data
sped Multi-Gene Descent Probabilities
spedecon Smoothness-Penalized Deconvolution for Density
Estimation Under Measurement Error
speech Legislative Speeches
speechbr Access the Speechs and Speaker's Informations
of House of Representatives of Brazil
speechmatics Client for the 'Speechmatics' Speech-to-Text
API
speedglm Fitting Linear and Generalized Linear Models to
Large Data Sets
speedyBBT Efficient Bayesian Inference for the
Bradley--Terry Model
speedycode Automate Code for Adding Labels, Recoding and
Renaming Variables, and Converting ASCII Files
speedytax Rapidly Import Classifier Results into
'phyloseq'
spefa Spatial Stochastic Frontier with Fixed Effects
and Endogeneity
speff2trial Semiparametric Efficient Estimation for a
Two-Sample Treatment Effect
spell.replacer Probabilistic Spelling Correction in a
Character Vector
spellcheckr Correct the Spelling of a Given Word in the
English Language
spelling Tools for Spell Checking in R
sperich Auxiliary Functions to Estimate Centers of
Biodiversity
sperrorest Perform Spatial Error Estimation and Variable
Importance Assessment
spex Spatial Extent Tools
spexvb Parameter Expanded Variational Bayes for
High-Dimensional Linear Regression
spfa Semi-Parametric Factor Analysis
spfda Function-on-Scalar Regression with Group-Bridge
Penalty
spfilteR Semiparametric Spatial Filtering with
Eigenvectors in (Generalized) Linear Models
spgs Statistical Patterns in Genomic Sequences
spgwr Geographically Weighted Regression
sphereML Analyzing Students' Performance Dataset in
Physics Education Research (SPHERE) using
Machine Learning (ML)
sphereclust Model Based Clustering for Spherical Data Using
Elliptically Symmetric Distributions
spheredata Students' Performance Dataset in Physics
Education Research (SPHERE)
spherepc Spherical Principal Curves
sphereplot Spherical Plotting
spheresmooth Piecewise Geodesic Smoothing for Spherical Data
sphet Estimation of Spatial Autoregressive Models
with and without Heteroskedastic Innovations
sphunif Uniformity Tests on the Circle, Sphere, and
Hypersphere
spicy Descriptive Statistics, Summary Tables, and
Data Management Tools
spidR Spider Knowledge Online
spider Species Identity and Evolution in R
spiderbar Parse and Test Robots Exclusion Protocol Files
and Rules
spikeSlabGAM Bayesian Variable Selection and Model Choice
for Generalized Additive Mixed Models
spikes Detecting Election Fraud from Irregularities in
Vote-Share Distributions
spikeslab Prediction and Variable Selection Using Spike
and Slab Regression
spima Simulated Pseudo-Individual Data Meta-Analysis
with ABC-SMC
spinBayes Semi-Parametric Gene-Environment Interaction
via Bayesian Variable Selection
spind Spatial Methods and Indices
spinebil Investigating New Projection Pursuit Index
Functions
spinifex Manual Tours, Manual Control of Dynamic
Projections of Numeric Multivariate Data
spinner An Implementation of Graph Net Architecture
Based on 'torch'
spinyReg Sparse Generative Model and Its EM Algorithm
spiralize Visualize Data on Spirals
spiritR Template for Clinical Trial Protocol
spiro Manage Data from Cardiopulmonary Exercise
Testing
splancs Spatial and Space-Time Point Pattern Analysis
splash Simple Process-Led Algorithms for Simulating
Habitats
splatter Simple Simulation of Single-cell RNA Sequencing
Data
spldv Spatial Models for Limited Dependent Variables
splikit Analysing RNA Splicing in Single-Cell RNA
Sequencing Data
splineCox A Two-Stage Estimation Approach to Cox
Regression Using M-Spline Function
splinemixmeta Additive Mixed Meta-Analysis with Spline
Meta-Regression
splineplot Visualization of Spline Effects in GAM and GLM
Models
splines2 Regression Spline Functions and Classes
splinetree Longitudinal Regression Trees and Forests
splinetrials Facilitate Clinical Trials Analysis Using
Natural Cubic Splines
splitGraph Dataset Dependency Graphs for Leakage-Aware
Evaluation
splitSelect Best Split Selection Modeling for
Low-Dimensional Data
splitTools Tools for Data Splitting
splitfngr Combined Evaluation and Split Access of
Functions
splithalf Calculate Task Split Half Reliability Estimates
splithalfr Estimate Split-Half Reliabilities
splitr Fast Utilities for Splitting Excel Sheets
splitstackshape Stack and Reshape Datasets After Splitting
Concatenated Values
splm Econometric Models for Spatial Panel Data
splmm Simultaneous Penalized Linear Mixed Effects
Models
splot Simplified Plotting for Data Exploration
spls Sparse Partial Least Squares (SPLS) Regression
and Classification
splus2R Supplemental S-PLUS Functionality in R
splusTimeDate Times and Dates from 'S-PLUS'
splusTimeSeries Time Series from 'S-PLUS'
splutil Utility Functions for Common Base-R Problems
Relating to Lists
spm Spatial Predictive Modeling
spm2 Spatial Predictive Modeling
spmixW Bayesian Spatial Panel Data Models with Convex
Combinations of Weight Matrices
spmodel Spatial Statistical Modeling and Prediction
spmoran Fast Spatial and Spatio-Temporal Regression
using Moran Eigenvectors
spnaf Spatial Network Autocorrelation for Flow Data
spnn Scale Invariant Probabilistic Neural Networks
spocc Interface to Species Occurrence Data Sources
spoiler Blur 'HTML' Elements in 'Shiny' Applications
Using 'Spoiler-Alert.js'
spongebob SpongeBob-Case Converter : spOngEboB-CASe
CoNVertER
spongecake Transform a Movie into a Synthetic Picture
spooky Time Feature Extrapolation Using Spectral
Analysis and Jack-Knife Resampling
spopt Spatial Optimization for Regionalization,
Facility Location, and Market Analysis
spork Generalized Label Formatting
sport Sequential Pairwise Online Rating Techniques
sportyR Plot Scaled 'ggplot' Representations of Sports
Playing Surfaces
spotidy Providing Convenience Functions to Connect R
with the Spotify API
spotifyr R Wrapper for the 'Spotify' Web API
spotoroo Spatiotemporal Clustering of Satellite Hot Spot
Data
spotr Estimate Spatial Population Indices from
Ecological Abundance Data
spphpr Spring Phenological Prediction
spqdep Testing for Spatial Independence of
Cross-Sectional Qualitative Data
spqrp Sample Provenance Quality Resolver in
Proteomics
spray Sparse Arrays and Multivariate Polynomials
spreadr Simulating Spreading Activation in a Network
spreval Evaluation of Sprinkler Irrigation Uniformity
and Efficiency
sprex Species Richness and Extrapolation
springer Sparse Group Variable Selection for
Gene-Environment Interactions in the
Longitudinal Study
springpheno Spring Phenological Indices
sprtt Sequential Probability Ratio Tests Toolbox
sps Sequential Poisson Sampling
spsComps 'systemPipeShiny' UI and Server Components
spsUtil 'systemPipeShiny' Utility Functions
spselect Selecting Spatial Scale of Covariates in
Regression Models
spsur Spatial Seemingly Unrelated Regression Models
spsurvey Spatial Sampling Design and Analysis
sptotal Predicting Totals and Weighted Sums from
Spatial Data
spuRs Functions and Datasets for "Introduction to
Scientific Programming and Simulation Using R"
spup Spatial Uncertainty Propagation Analysis
spuriouscorrelations Datasets with Strong and Spurious Correlations
sqlHelpers Collection of 'SQL' Utilities for 'T-SQL' and
'Postgresql'
sqlcaser 'SQL' Case Statement Generator
sqldf Manipulate R Data Frames Using SQL
sqlfluffr Wrapper to the 'SQL' Linter and Formatter
'sqlfluff'
sqlhelper Easier 'SQL' Integration
sqliter Connection wrapper to SQLite databases
sqliteutils Utility Functions for 'SQLite'
sqlm SQL-Backed Linear Regression
sqlparseR Wrapper for 'Python' Module 'sqlparse': Parse,
Split, and Format 'SQL'
sqlq 'SQL' Query Builder
sqlstrings Map 'SQL' Code to R Lists
sqltargets 'Targets' Extension for 'SQL' Queries
squant Subgroup Identification Based on Quantitative
Objectives
squash Color-Based Plots for Multivariate
Visualization
squat Statistics for Quaternion Temporal Data
squid Statistical Quantification of Individual
Differences
squids Short Quasi-Unique Identifiers (SQUIDs)
sr Smooth Regression - The Gamma Test and Tools
sra Selection Response Analysis
srcpkgs R Source Packages Manager
srcr Simplify Connections to Database Sources
sreg Stratified Randomized Experiments
sregsurvey Semiparametric Model-Assisted Estimation in
Finite Populations
srlars Fast and Scalable Cellwise-Robust Ensemble
srm Structural Equation Modeling for the Social
Relations Model
srpi Standardized Ranking Performance Index for
Model Selection
srppp Read the Swiss Register of Plant Protection
Products
srt Read Subtitle Files as Tabular Data
srvyr 'dplyr'-Like Syntax for Summary Statistics of
Survey Data
ss3sim Fisheries Stock Assessment Simulation Testing
with Stock Synthesis
ssMRCD Robust Estimators for Multi-Group and Spatial
Data
ssMutPA Single-Sample Mutation-Based Pathway Analysis
ssaBSS Stationary Subspace Analysis
ssanv Sample Size Adjusted for Nonadherence or
Variability of Input Parameters
ssc Semi-Supervised Classification Methods
sscor Robust Correlation Estimation and Testing Based
on Spatial Signs
ssd4mosaic Web Application for the SSD Module of the
MOSAIC Platform
ssddata Species Sensitivity Distribution Data
ssdtools Species Sensitivity Distributions
ssebiEF Calculation of SSEBI and Evaporative Fraction
from Raster Data
ssev Sample Size Computation for Fixed N with
Optimal Reward
ssfa Spatial Stochastic Frontier Analysis
ssfit Fitting of Parametric Models using Summary
Statistics
ssgraph Bayesian Graph Structure Learning using
Spike-and-Slab Priors
ssh Secure Shell (SSH) Client for R
sshicm Information Consistency-Based Measures for
Spatial Stratified Heterogeneity
sship Tool for Secure Shipment of Content
sshist Optimal Histogram Binning Using
Shimazaki-Shinomoto Method
ssifs Stochastic Search Inconsistency Factor
Selection
ssimparser Standard Schedules Information Parser
ssize Estimate Microarray Sample Size
ssize.fdr Sample Size Calculations for Microarray
Experiments
ssizeRNA Sample Size Calculation for RNA-Seq
Experimental Design
ssmn Skew Scale Mixtures of Normal Distributions
ssmodels Sample Selection Models
ssmooth Smooth Raster Time Series
ssmrob Robust Estimation and Inference in Sample
Selection Models
ssmsn Scale-Shape Mixtures of Skew-Normal
Distributions
sspm Spatial Surplus Production Model Framework for
Northern Shrimp Populations
sspse Estimating Hidden Population Size using
Respondent Driven Sampling Data
ssr Semi-Supervised Regression Methods
ssrn Scan Statistics for Railway Network
sss Import Files in the Triple-s (Standard Survey
Structure) Format
sssvcqr Sparse-Smooth Spatially Varying Coefficient
Quantile Regression
sstn Self-Similarity Test for Normality
sstvars Toolkit for Reduced Form and Structural Smooth
Transition Vector Autoregressive Models
ssutil Sample Size Calculation Tools
ssw Striped Smith-Waterman Algorithm for Sequence
Alignment using SIMD
ssym Fitting Semi-Parametric log-Symmetric
Regression Models
st Shrinkage t Statistic and Correlation-Adjusted
t-Score
stCEG Fully Customizable Chain Event Graphs over
Spatial Areas
stIHC Spatial Transcriptomics Iterative Hierarchical
Clustering
stR Seasonal Trend Decomposition Using Regression
stRoke Clinical Stroke Research
sta Seasonal Trend Analysis for Time Series Imagery
in R
staRdom PARAFAC Analysis of EEMs from DOM
staat1cho Study Indicators Based on Dutch Higher
Education Data (1CHO)
stabiliser Stabilising Variable Selection
stability Stability Analysis of Genotype by Environment
Interaction (GEI)
stabilo Stabilometric Signal Quantification
stable Probability Functions and Generalized
Regression Models for Stable Distributions
stableGR A Stable Gelman-Rubin Diagnostic for Markov
Chain Monte Carlo
stabledist Stable Distribution Functions
stablelearner Stability Assessment of Statistical Learning
Methods
stabm Stability Measures for Feature Selection
stabs Stability Selection with Error Control
staccuracy Standardized Accuracy and Other Model
Performance Metrics
stackgbm Stacked Gradient Boosting Machines
stacking Building Predictive Models with Stacking
stacks Tidy Model Stacking
stacomirtools Connection Class for Package stacomiR
stacr Tidy 'STAC' Workflows for R
stagePop Modelling the Population Dynamics of a
Stage-Structured Species in Continuous Time
stagedtrees Staged Event Trees
staggR Fit Difference-in-Differences Models with
Staggered Interventions
staggered Efficient Estimation Under Staggered Treatment
Timing
stagsynth Staggered Synthetic Control Estimation and
Inference
stampr Spatial Temporal Analysis of Moving Polygons
stan4bart Bayesian Additive Regression Trees with
Stan-Sampled Parametric Extensions
standardize Tools for Standardizing Variables for
Regression in R
standardlastprofile BDEW Standard Load Profiles for Electricity and
Gas
standartox Ecotoxicological Information from the
Standartox Database
standby Alerts, Notifications and Loading Screen in
'Shiny'
standrecon Reconstruct Historical Forest Stand Conditions
staninside Facilitating the Use of 'Stan' Within Packages
stanza 'Stanza' - A 'R' NLP Package for Many Human
Languages
stapler Simultaneous Truth and Performance Level
Estimation
staplr A Toolkit for PDF Files
starburst Seamless AWS Cloud Bursting for Parallel R
Workloads
stargazer Well-Formatted Regression and Summary
Statistics Tables
starling Link Infectious Disease Cases to Vaccination
and Hospitalization Records
starm Spatio-Temporal Autologistic Regression Model
starma Modelling Space Time AutoRegressive Moving
Average (STARMA) Processes
starnet Stacked Elastic Net
starry Explore Data with Plots and Tables
stars Spatiotemporal Arrays, Raster and Vector Data
Cubes
starsExtra Miscellaneous Functions for Working with
'stars' Rasters
starsTileServer A Dynamic Tile Server for R
starschemar Obtaining Stars from Flat Tables
startR Automatically Retrieve Multidimensional
Distributed Data Sets
starter Starter Kit for New Projects
startup Friendly R Startup Configuration
startupmsg Utilities for Start-Up Messages
starvars Vector Logistic Smooth Transition Models
Estimation and Prediction
starvz R-Based Visualization Techniques for Task-Based
Applications
starwarsdb Relational Data from the 'Star Wars' API for
Learning and Teaching
statAPA APA 7th Edition Statistical Tables, Plots, and
Multilevel Model Reports
statAfrikR Statistical Tools for African National
Statistics Institutes
statBasics Basic Functions to Statistical Methods Course
statConfR Models of Decision Confidence and Measures of
Metacognition
statGraph Statistical Methods for Graphs
statMatchLCM Statistical Matching Using Latent Class Models
statar Tools Inspired by 'Stata' to Manipulate Tabular
Data
statcheck Extract Statistics from Articles and Recompute
P-Values
statcodelists Use Standardized Statistical Codelists
statcomp Statistical Complexity and Information Measures
for Time Series Analysis
statdecideR Automated Statistical Analysis and Plotting
with CLD
statease Simplified Statistical Analysis with
Plain-English Interpretation
statebins Create United States Uniform Cartogram Heatmaps
states Create Panels of Independent States
statespacer State Space Modelling in 'R'
statforbiology Data Analyses in Agriculture and Biology
statgen Statistical Genetics Data Objects and Loaders
statgenGWAS Genome Wide Association Studies
statgenGxE Genotype by Environment (GxE) Analysis
statgenHTP High Throughput Phenotyping (HTP) Data Analysis
statgenIBD Calculation of IBD Probabilities
statgenMPP QTL Mapping for Multi Parent Populations
statgenQTLxT Multi-Trait and Multi-Trial Genome Wide
Association Studies
statgenSTA Single Trial Analysis (STA) of Field Trials
staticryptR Encrypt HTML Files Using 'staticrypt'
statioVAR Trend Removal for Vector Autoregressive
Workflows
stationaRy Detailed Meteorological Data from Stations All
Over the World
statip Statistical Functions for Probability
Distributions and Regression
statisR STATIS and STATIS DUAL Multivariate Methods
statisfactory Statistical and Geometrical Tools
statlingua Explain Statistical Output with Large Language
Models
statmod Statistical Modeling
statnet Software Tools for the Statistical Analysis of
Network Data
statnet.common Common R Scripts and Utilities Used by the
Statnet Project Software
statnetWeb A Shiny App for Network Modeling with 'statnet'
statnipokladna Use Data from the Czech Public Finance Database
statprograms Graduate Statistics Program Datasets
statpsych Statistical Methods for Psychologists
statquotes Quotes on Statistics, Data Visualization and
Science
stats19 Work with Open Road Traffic Casualty Data from
Great Britain
stats4teaching Simulate Pedagogical Statistical Data
statsExpressions Tidy Dataframes and Expressions with
Statistical Details
statsearchanalyticsr An Interface for the 'STAT Search Analytics'
'API'
statsr Companion Software for the Coursera Statistics
with R Specialization
statswalesr Easily Extract Data from 'StatsWales'
statuser Statistical Tools Designed for End Users
stbimageheaders 'stb' Image C/C++ Header Files
stbl Stabilize Function Arguments
stcos Space-Time Change of Support
stcov Stein's Covariance Estimator
stcpR6 Sequential Test and Change-Point Detection
Algorithms Based on E-Values / E-Detectors
stdReg Regression Standardization
stdReg2 Regression Standardization for Causal Inference
stdbscan Spatio-Temporal DBSCAN Clustering
stddiff Calculate the Standardized Difference for
Numeric, Binary and Category Variables
stddiff.spark Calculate the Standardized Difference for
Numeric, Binary and Category Variables in
Apache Spark
stdmod Standardized Moderation Effect and Its
Confidence Interval
stdvectors C++ Standard Library Vectors in R
steadyICA ICA and Tests of Independence via Multivariate
Distance Covariance
steepness Testing Steepness of Dominance Hierarchies
stelfi Hawkes and Log-Gaussian Cox Point Processes
Using Template Model Builder
stellaR Evolutionary Tracks and Isochrones from Pisa
Stellar Evolution Database
stemmatology Stemmatological Analysis of Textual Traditions
stenR Standardization of Raw Discrete Questionnaire
Scores
stencilaschema Bindings for Stencila Schema
stenographer Flexible and Customisable Logging System
stepPenal Stepwise Forward Variable Selection in
Penalized Regression
stepPlr L2 Penalized Logistic Regression with Stepwise
Variable Selection
stepR Multiscale Change-Point Inference
stepSplitReg Stepwise Split Regularized Regression
stepcount Estimate Step Counts from 'Accelerometry' Data
stepdownfdp A Step-Down Procedure to Control the False
Discovery Proportion
stepgbm Stepwise Variable Selection for Generalized
Boosted Regression Modeling
stepjglm Variable Selection for Joint Modeling of Mean
and Dispersion
stepmetrics Calculate Step and Cadence Metrics from
Wearable Data
stepmixr Interface to 'Python' Package 'StepMix'
stepp Subpopulation Treatment Effect Pattern Plot
(STEPP)
steppedwedge Analyze Data from Stepped Wedge Cluster
Randomized Trials
steprf Stepwise Predictive Variable Selection for
Random Forest
stepssurvey Analyse WHO STEPS Survey Data
stevedata Steve's Toy Data for Teaching About a Variety
of Methodological, Social, and Political Topics
stevedore Docker Client
stevemisc Steve's Miscellaneous Functions
stevetemplates Steve's R Markdown Templates
stevethemes Steve's 'ggplot2' Themes and Related Theme
Elements
stfit Spatio-Temporal Functional Imputation Tool
stgam Spatially and Temporally Varying Coefficient
Models Using Generalized Additive Models
sticky Persist Attributes Across Data Operations
stickyr Data Frames with Persistent Columns and
Attributes
stilt Separable Gaussian Process Interpolation
(Emulation)
stim Incorporating Stability Information into
Cross-Sectional Estimates
stima Simultaneous Threshold Interaction Modeling
Algorithm
stinepack Stineman, a Consistently Well Behaved Method of
Interpolation
stlARIMA STL Decomposition and ARIMA Hybrid Forecasting
Model
stlELM Hybrid Forecasting Model Based on STL
Decomposition and ELM
stlTDNN STL Decomposition and TDNN Hybrid Time Series
Forecasting
stlnpp Spatio-Temporal Analysis of Point Patterns on
Linear Networks
stlplus Enhanced Seasonal Decomposition of Time Series
by Loess
stm Estimation of the Structural Topic Model
stmgp Rapid and Accurate Genetic Prediction Modeling
for Genome-Wide Association or Whole-Genome
Sequencing Study Data
stmgui Shiny Application for Creating STM Models
stocc Fit a Spatial Occupancy Model via Gibbs
Sampling
stochLAB Stochastic Collision Risk Model
stochQN Stochastic Limited Memory Quasi-Newton
Optimizers
stochcorr Stochastic Correlation Modelling via Circular
Diffusion
stochtree Stochastic Tree Ensembles (XBART and BART) for
Supervised Learning and Causal Inference
stochvol Efficient Bayesian Inference for Stochastic
Volatility (SV) Models
stochvolTMB Likelihood Estimation of Stochastic Volatility
Models
stockAnalyst Equity Valuation using Methods of Fundamental
Analysis
stockR Identifying Stocks in Genetic Data
stodom Estimating Consistent Tests for Stochastic
Dominance
stoichUtilities User Tools for Accessing the STOICH Project
Database
stoichcalc R Functions for Solving Stoichiometric
Equations
stokes The Exterior Calculus
stopmotion Build Stop Motion Animations from Image
Sequences
stopp Spatio-Temporal Point Pattern Methods, Model
Fitting, Diagnostics, Simulation, Local Tests
stoppingrule Create and Evaluate Stopping Rules for Safety
Monitoring
stops Structure Optimized Proximity Scaling
stopwords Multilingual Stopword Lists
storr Simple Key Value Stores
stors Step Optimised Rejection Sampling
stortingscrape Access Data from the Norwegian Parliament API
storywranglr Explore Twitter Trends with the 'Storywrangler'
API
stosim Stochastic Simulator for Reliability Modeling
of Repairable Systems
stplanr Sustainable Transport Planning
stpp Space-Time Point Pattern Simulation,
Visualisation and Analysis
stppSim Spatiotemporal Point Patterns Simulation
stpphawkes Missing Data for Marked Hawkes Process
str2str Convert R Objects from One Structure to Another
strand A Framework for Investment Strategy Simulation
stranslate Simple Translation Between Different Languages
strap Stratigraphic Tree Analysis for Palaeontology
strat An Implementation of the Stratification Index
stratEst Strategy Estimation
strata Simple Framework for Simple Automation
strata.MaxCombo Stratified Max-Combo Test
stratallo Optimum Sample Allocation in Stratified
Sampling
stratamatch Stratification and Matching for Large
Observational Data Sets
stratastats Stratified Analysis of 2x2 Contingency Tables
stratbr Optimal Stratification in Stratified Sampling
stratcols Stratigraphic Columns and Order Metrics
strategicplayers Strategic Players
stratification Univariate Stratification of Survey Populations
stratifiedyh Stratified Sampling and Labeling of Data in R
straweib Stratified Weibull Regression Model
strawr Fast Implementation of Reading/Dump for .hic
Files
stray Anomaly Detection in High Dimensional and
Temporal Data
stream Infrastructure for Data Stream Mining
streamDAG Analytical Methods for Stream DAGs
streamDepletr Estimate Streamflow Depletion Due to
Groundwater Pumping
streamMOA Interface for MOA Stream Clustering Algorithms
streamR Access to Twitter Streaming API via R
streambugs Parametric Ordinary Differential Equations
Model of Growth, Death, and Respiration of
Macroinvertebrate and Algae Taxa
streamsampler Characterize and Subsample Stream Data
streamy Inline Asynchronous Generator Results into
Documents
streetscape Collect and Investigate Street Views for Urban
Science
strength Operations Designed for Tidy Strength Data
stressaddition Modelling Tri-Phasic Concentration-Response
Relationships
stressor Algorithms for Testing Models under Stress
stressr Fetch and plot financial stress index and
component data.
strex Extra String Manipulation Functions
stringArt Tools for Generating String Art Figures
stringdist Approximate String Matching, Fuzzy Text Search,
and String Distance Functions
stringfish Alt String Implementation
stringformattr Dynamic String Formatting
stringi Fast and Portable Character String Processing
Facilities
stringmagic Character String Operations and Interpolation,
Magic Edition
stringr Simple, Consistent Wrappers for Common String
Operations
stringstatic Dependency-Free String Operations
stringx Replacements for Base String Functions Powered
by 'stringi'
strip Lighten your R Model Outputs
stripless Structured Trellis Displays Without Strips for
Lattice Graphics
striprtf Extract Text from RTF File
strs 'Python' Style String Functions
strucchange Testing, Monitoring, and Dating Structural
Changes
strucchangeRcpp Testing, Monitoring, and Dating Structural
Changes: C++ Version
structSSI Multiple Testing for Hypotheses with
Hierarchical or Group Structure
structenforcement Struct-Like Data Type Checking and Enforcement
structree Tree-Structured Clustering
strvalidator Process Control and Validation of Forensic STR
Kits
sts Estimation of the Structural Topic and
Sentiment-Discourse Model for Text Analysis
stt.api 'OpenAI' Compatible Speech-to-Text API Client
stuart Subtests Using Algorithmic Rummaging Techniques
studentlife Tidy Handling and Navigation of the
Student-Life Dataset
studyStrap Study Strap and Multi-Study Learning Algorithms
stxplore Exploration of Spatio-Temporal Data
styler Non-Invasive Pretty Printing of R Code
stylest2 Estimating Speakers of Texts
stylo Stylometric Multivariate Analyses
suRface.analytics Statistical Analysis and Visualization of
Surface-Engineered Material Properties
subdetect Detect Subgroup with an Enhanced Treatment
Effect
subgroup Methods for exploring treatment effect
heterogeneity in subgroup analysis of clinical
trials
subincomeR Access to Global Sub-National Income Data
submax Effect Modification in Observational Studies
Using the Submax Method
submitr Scaffold and Submit Computational Jobs to HTC
Schedulers
subniche Within Outlying Mean Indexes: Refining the
'OMI' Analysis
subplex Unconstrained Optimization using the Subplex
Algorithm
subrank Computes Copula using Ranks and Subsampling
subsampling Optimal Subsampling Methods for Statistical
Models
subscore Computing Subscores in Classical Test Theory
and Item Response Theory
subscreen Systematic Screening of Study Data for Subgroup
Effects
subselect Selecting Variable Subsets
subsemble An Ensemble Method for Combining
Subset-Specific Algorithm Fits
substackR Access Substack Data via API
subtools Read and Manipulate Video Subtitles
success Survival Control Charts Estimation Software
sudachir R Interface to 'Sudachi'
sudoku Sudoku Puzzle Generator and Solver
sudokuAlt Tools for Making and Spoiling Sudoku Games
sufficientForecasting Sufficient Forecasting using Factor Models
sugarbag Create Tessellated Hexagon Maps
sugarglider Create Glyph-Maps of Spatiotemporal Data
suggests Declare when Suggested Packages are Needed
sugrrants Supporting Graphs for Analysing Time Series
sulcimap Mapping Cortical Folding Patterns
sumExtras Extra Functions for 'gtsummary' Table Styling
sumSome Permutation True Discovery Guarantee by
Sum-Based Tests
sumer Sumerian Cuneiform Text Analysis
summariser Easy Calculation and Visualisation of
Confidence Intervals
summarySCI Produces Publication-Ready Summary Tables
summarytabl Generate Summary Tables for Categorical,
Ordinal, and Continuous Data
summarytools Tools to Quickly and Neatly Summarize Data
summata Publication-Ready Summary Tables and Forest
Plots
sumup Utilizing Automated Text Analysis to Support
Interpretation of Narrative Feedback
sumvar Summarise and Explore Continuous, Categorical
and Date Variables
sunburstR Sunburst 'Htmlwidget'
sunburstShinyWidget Sunburst 'HTML' Widget Based on 'd3.js'
suncalc Compute Sun Position, Sunlight Phases, Moon
Position and Lunar Phase
suntools Calculate Sun Position, Sunrise, Sunset, Solar
Noon and Twilight
supabaseR 'CRUD' Utils in 'R' for 'Supabase'
supclust Supervised Clustering of Predictor Variables
Such as Genes
super Interpreted String Literals
superb Summary Plots with Adjusted Error Bars
supercells Superpixels of Spatial Data
supercompress Supervised Compression of Big Data
superdiag A Comprehensive Test Suite for Testing Markov
Chain Nonconvergence
supernova Judd, McClelland, & Ryan Formatting for ANOVA
Output
superpc Supervised Principal Components
superspreading Understand Individual-Level Variation in
Infectious Disease Transmission
supervisedPRIM Supervised Classification Learning and
Prediction using Patient Rule Induction Method
(PRIM)
support.BWS Tools for Case 1 Best-Worst Scaling
support.BWS2 Tools for Case 2 Best-Worst Scaling
support.BWS3 Tools for Case 3 Best-Worst Scaling
support.CEs Basic Functions for Supporting an
Implementation of Choice Experiments
supportR Support Functions for Wrangling and
Visualization
sur Companion to "Statistics Using R: An
Integrative Approach"
sure Surrogate Residuals for Ordinal and General
Regression Models
sureLDA A Novel Multi-Disease Automated Phenotyping
Method for the EHR
surface Fitting Hansen Models to Investigate Convergent
Evolution
surreal Create Datasets with Hidden Images in Residual
Plots
surrosurv Evaluation of Failure Time Surrogate Endpoints
in Individual Patient Data Meta-Analyses
surrosurvROC Surrogate Survival ROC
surtvep Cox Non-Proportional Hazards Model with
Time-Varying Coefficients
surv2sampleComp Inference for Model-Free Between-Group
Parameters for Censored Survival Data
survAH Survival Data Analysis using Average Hazard
survAUC Estimators of Prediction Accuracy for
Time-to-Event Data
survAWKMT2 Two-Sample Tests Based on Differences of
Kaplan-Meier Curves
survBootOutliers Concordance Based Bootstrap Methods for Outlier
Detection in Survival Analysis
survC Survival Model Validation Utilities
survC1 C-Statistics for Risk Prediction Models with
Censored Survival Data
survCurve Plots Survival Curves Element by Element
survELtest Comparing Multiple Survival Functions with
Crossing Hazards
survHE Survival Analysis in Health Economic Evaluation
survIDINRI IDI and NRI for Comparing Competing Risk
Prediction Models with Censored Survival Data
survML Tools for Flexible Survival Analysis Using
Machine Learning
survNMA Network Meta-Analysis Combining Survival and
Count Outcomes
survParamSim Parametric Survival Simulation with Parameter
Uncertainty
survPen Multidimensional Penalized Splines for (Excess)
Hazard Models, Relative Mortality Ratio Models
and Marginal Intensity Models
survPresmooth Presmoothed Estimation in Survival Analysis
survRM2 Comparing Restricted Mean Survival Time
survRM2adapt Flexible and Coherent Test/Estimation Procedure
Based on Restricted Mean Survival Times
survRM2perm Permutation Test for Comparing Restricted Mean
Survival Time
survSAKK Create Publication Ready Kaplan-Meier Plots
survSNP Power Calculations for SNP Studies with
Censored Outcomes
survSens Sensitivity Analysis with Time-to-Event
Outcomes
survSpearman Nonparametric Spearman's Correlation for
Survival Data
survalis Interpretable Survival Machine Learning
Framework
survcomp Performance Assessment and Comparison for
Survival Analysis
survcompare Nested Cross-Validation to Compare Cox-PH,
Cox-Lasso, Survival Random Forests
survdistr Survival Distribution Container with Flexible
Interpolation Methods
survdnn Deep Neural Networks for Survival Analysis with
R 'torch'
survdt Improved Methods for Survival Analysis under
Double Truncation
surveil Time Series Models for Disease Surveillance
surveillance Temporal and Spatio-Temporal Modeling and
Monitoring of Epidemic Phenomena
survex Explainable Machine Learning in Survival
Analysis
survexp.fr Relative Survival, AER and SMR Based on French
Death Rates
survextrap Bayesian Flexible Parametric Survival Modelling
and Extrapolation
survey Analysis of Complex Survey Samples
surveyCV Cross Validation Based on Survey Design
surveyPrev Mapping the Prevalence of Binary Indicators
using Survey Data in Small Areas
surveySimR Estimation of Population Total under Complex
Sampling Design
surveybootstrap Bootstrap with Survey Data
surveycore Core Survey Analysis Infrastructure
surveydata Tools to Work with Survey Data
surveydown Markdown-Based Programmable Surveys Using
'Quarto' and 'shiny'
surveyexplorer Quickly Explore Complex Survey Data
surveyframe Survey Instrument Workflows
surveygraph Network Representations of Attitudes
surveyplanning Survey Planning Tools
surveysd Survey Standard Error Estimation for Cumulated
Estimates and their Differences in Complex
Panel Designs
surveysearch Search and Examine Variables Across Survey
Datasets
surveytable Streamlining Complex Survey Estimation and
Reliability Assessment in R
surveytidy Tidy 'dplyr'/'tidyr' Verbs for Survey Design
Objects
surveyvoi Survey Value of Information
survidm Inference and Prediction in an Illness-Death
Model
survinger Design-Adjusted Inference for Pathogen Lineage
Surveillance
surviv Flexible Instrumental Variable Methods for
Survival Analysis
survivalMPL Penalised Maximum Likelihood for Survival
Analysis Models
survivalPLANN Neural Networks to Predict Survival
survivalREC Nonparametric Estimation of the Distribution of
Gap Times for Recurrent Events
survivalROC Time-Dependent ROC Curve Estimation from
Censored Survival Data
survivalSL Super Learner for Survival Prediction from
Censored Data
survivalVignettes Survival Analysis Vignettes and Optional
Datasets
survivalmodels Models for Survival Analysis
survivalsurrogate Evaluate a Longitudinal Surrogate with a
Censored Outcome
survivalsvm Survival Support Vector Analysis
survivoR Data from all Seasons of Survivor (US) TV
Series in Tidy Format
survkl Estimate Survival Data with Data Integration
survlab Survival Model-Based Imputation for Laboratory
Non-Detect Data
survminer Drawing Survival Curves using 'ggplot2'
survmixer Design of Clinical Trials with Survival
Endpoints Based on Binary Responses
survobj Objects to Simulate Survival Times
survout Excel Conversion of R Surival Analysis Output
survregVB Variational Bayesian Analysis of Survival Data
survsim Simulation of Simple and Complex Survival Data
survstan Fitting Survival Regression Models via 'Stan'
susieR Sum of Single Effects Linear Regression
susographql Comprehensive Interface to the Survey Solutions
'GraphQL' API
suwo Access Nature Media Repositories
svDialogs 'SciViews::R' - Standard Dialog Boxes for
Windows, MacOS and Linuxes
svDialogstcltk 'SciViews::R' - Standard Dialog Boxes using
Tcl/Tk
svGUI 'SciViews::R' - Manage GUIs in R
svHttp 'SciViews::R' - HTTP Server
svIDE Functions to Ease Interactions Between R and
IDE or Code Editors
svKomodo 'SciViews' - Functions to Interface with Komodo
IDE
svMisc Miscellaneous Functions for 'SciViews::R'
svSocket 'SciViews' - Socket Server
svSweave 'SciViews' - 'Sweave', 'Knitr' and R Markdown
Companion Functions
svTools Wrappers for Tools in Other Packages for IDE
Friendliness
svUnit 'SciViews::R' - Unit, Integration and System
Testing
svWidgets Management of GUI Widgets, Windows, and Other
GUI Resources
sva Surrogate Variable Analysis
svars Data-Driven Identification of SVAR Models
svd Interfaces to Various State-of-Art SVD and
Eigensolvers
svenssonm Svensson's Method
svgPanZoom R 'Htmlwidget' to Add Pan and Zoom to Almost
any R Graphic
svgViewR 3D Animated Interactive Visualizations Using
SVG and WebGL
svgedit Insert Graphs, Images and Text in SVG Files
svglite An 'SVG' Graphics Device
svgtools Manipulate SVG (Template) Files of Charts
svines Stationary Vine Copula Models
svmpath The SVM Path Algorithm
svplots Sample Variance Plots (Sv-Plots)
svrep Tools for Creating, Updating, and Analyzing
Survey Replicate Weights
svrpath The SVR Path Algorithm
svs Tools for Semantic Vector Spaces
svyCausalGLM Survey-Weighted Modeling Utilities
svyROC Estimation of the ROC Curve and the AUC for
Complex Survey Data
svyVGAM Design-Based Inference in Vector Generalised
Linear Models
svyVarSel Variable Selection for Complex Survey Data
svycdiff Controlled Difference Estimation for Complex
Surveys
svycoxme Mixed-Effects Cox Models for Complex Samples
svydiags Regression Model Diagnostics for Survey Data
svylme Linear Mixed Models for Complex Survey Data
svytest Survey Weight Diagnostic Tests
svyweight Quick and Flexible Survey Weighting
swCRTdesign Stepped Wedge Cluster Randomized Trial (SW CRT)
Design
swa Subsampling Winner Algorithm for Classification
swaRm Processing Collective Movement Data
swaRmverse Swarm Space Creation
swag Sparse Wrapper Algorithm
swagger Dynamically Generates Documentation from a
'Swagger' Compliant API
swaglm Fast Sparse Wrapper Algorithm for Generalized
Linear Models and Testing Procedures for
Network of Highly Predictive Variables
swamp Visualization, Analysis and Adjustment of
High-Dimensional Data in Respect to Sample
Annotations
swaprinc Swap Principal Components into Regression
Models
swash Health Geography Toolbox for Model-Based
Analysis of Infections Panel Data
swatches Read, Inspect, and Manipulate Color Swatch
Files
swcEcon Economic Analysis of Soil and Water
Conservation Measures in Watersheds
swdft Sliding Window Discrete Fourier Transform
(SWDFT)
swdpwr Power Calculation for Stepped Wedge Cluster
Randomized Trials
sweater Speedy Word Embedding Association Test and
Extras Using R
sweep Tidy Tools for Forecasting
sweidnumbr Handling of Swedish Identity Numbers
swephR High Precision Swiss Ephemeris
swfscDAS Processing DAS Data Files
swfscMisc Miscellaneous Functions for Southwest Fisheries
Science Center
swgee Simulation Extrapolation Inverse Probability
Weighted Generalized Estimating Equations
swimplot Tools for Creating Swimmers Plots using
'ggplot2'
swipeR Carousels using the 'JavaScript' Library
'Swiper'
swirl Learn R, in R
swirlify A Toolbox for Writing 'swirl' Courses
swissparl Interface to Swiss Parliament Web Services and
the 'OpenParlData' API
switchBox Utilities to train and validate classifiers
based on pair switching using the
K-Top-Scoring-Pair (KTSP) algorithm
switchSelection Endogenous Switching and Sample Selection
Regression Models
switchcase A Simple and Flexible Switch-Case Construct for
the 'R' Language
switchr Installing, Managing, and Switching Between
Distinct Sets of Installed Packages
swjm Stagewise Variable Selection for Joint Models
of Semi-Competing Risks
sylcount Syllable Counting and Readability Measurements
syllabifyr Syllabifier for CMU Dictionary Transcriptions
syllogi Collection of Data Sets for Teaching Purposes
sylly Hyphenation and Syllable Counting for Text
Analysis
sylly.en Language Support for 'sylly' Package: English
sym.arma Autoregressive and Moving Average Symmetric
Models
symDMatrix Partitioned Symmetric Matrices
symMCD Symmetrized MCD
symSEM Symbolic Computation for Structural Equation
Models
symTensor Symmetric Matrix and Tensor Decomposition
symbol.equation.gpt Simple User Interface to Build Equations and
Add Symbols
symbolicDA Analysis of Symbolic Data
symbolicr Symbolic Regression Framework
symengine Interface to the 'SymEngine' Library
symmetry Testing for Symmetry of Data and Model
Residuals
symmoments Symbolic Central and Noncentral Moments of the
Multivariate Normal Distribution
symptomcheckR Analyzing and Visualizing Symptom Checker
Performance
syn Creates Synonyms From Target Words
synMicrodata Synthetic Microdata Generator
syncdr Facilitate File Handling, Directory Comparison
& Synchronization
synchronicity Boost Mutex Functionality in R
synchrony Methods for Computing Spatial, Temporal, and
Spatiotemporal Statistics
synopR Fast Decoding of SYNOP (Surface Synoptic
Observations) Meteorological Messages
synr Explore and Process Synesthesia Consistency
Test Data
syntaxr An 'SPSS' Syntax Generator for Multi-Variable
Manipulation
syntenet Inference And Analysis Of Synteny Networks
syntenyPlotteR Genome Synteny Visualization
synthReturn Synthetic Matching Method for Returns
synthesis Generate Synthetic Data from Statistical Models
synthesisr Import, Assemble, and Deduplicate Bibliographic
Datasets
synthesizer Fast, Robust, and High-Quality Synthetic Data
Generation with a Tuneable Privacy-Utility
Trade-Off
syntheticdata Synthetic Clinical Data Generation and
Privacy-Preserving Validation
synthpop Generating Synthetic Versions of Sensitive
Microdata for Statistical Disclosure Control
syrup Measure Memory and CPU Usage for Parallel R
Code
sys Powerful and Reliable Tools for Running System
Commands in R
sysAgNPs Systematic Quantification of AgNPs to Unleash
their Potential for Applicability
sysfonts Loading Fonts into R
sysid System Identification in R
syslognet Send Log Messages to Remote 'syslog' Server
sysreqr Preflight Checks for 'R' Package System
Requirements
systemfit Estimating Systems of Simultaneous Equations
systemfonts System Native Font Finding
systemicrisk Systemic Risk and Network Reconstruction
syt Young Tableaux
syuzhet Extracts Sentiment and Sentiment-Derived Plot
Arcs from Text
tAI The tRNA Adaptation Index
tEDM Temporal Empirical Dynamic Modeling
tLagInterim Interim Monitoring of Clinical Trials with
Time-Lagged Outcome
tLagPropOdds Proportional Odds Model with Censored,
Time-Lagged Categorical Outcome
tRigon Toolbox for Integrative Pathomics Analysis
tRnslate Translate R Code in Source Files
tTOlr Likelihood Ratio Statistics for One or Two
Sample T-Tests
tab Create Summary Tables for Statistical Reports
tab2xml XML Generation from Tables
tabbitR Weighted Cross-Tabulations Exported to 'Excel'
tabbycat Tabulate and Summarise Categorical Data
taber Split and Recombine Your Data
tabit Simple Tabulation Made Simple
tablaxlsx Write Formatted Tables in Excel Workbooks
table.express Build 'data.table' Expressions with Data
Manipulation Verbs
table.glue Make and Apply Customized Rounding
Specifications for Tables
table1 Tables of Descriptive Statistics in HTML
tableHTML A Tool to Create HTML Tables
tableMatrix Combines 'data.table' and 'matrix' Classes
tableParser Parse Tabled Content to Text Vector and Extract
Statistical Standard Results
tablecompare Compare Data Frames
tabledown Create Publication Quality Tables and Plots
tableeasy Tables of Clinical Study
tableone Create 'Table 1' to Describe Baseline
Characteristics with or without Propensity
Score Weights
tabler Create Dashboards with 'Tabler' and 'Shiny'
tablerDash 'Tabler' API for 'Shiny'
tables Formula-Driven Table Generation
tablesgg Presentation-Quality Tables, Displayed Using
'ggplot2'
tablespan Create Satisficing 'Excel', 'HTML', 'LaTeX',
and 'RTF' Tables using a Simple Formula
tablet Tabulate Descriptive Statistics in Multiple
Formats
tablexlsx Export Data Frames to Excel Workbook
tabnet Fit 'TabNet' Models for Classification and
Regression
taboolaR Get Data from 'Taboola' via the 'Windsor.ai'
API
tabpfn Prior-Data Fitted Network Foundational Model
for Tabular Data
tabr Music Notation Syntax, Manipulation, Analysis
and Transcription in R
tabs Temporal Altitudinal Biogeographic Shifts
tabshiftr Reshape Disorganised Messy Data
tabstats A Lightweight Toolkit for Displaying
Customizable Tables
tabtibble Simplify Reporting Many Tables
tabuSearch Tabu Search Algorithm for Binary Configurations
tabula Analysis and Visualization of Archaeological
Count Data
tabulapdf Extract Tables from PDF Documents
tabular Render Tables and Listings for Clinical
Submissions
tabularMLC Tabular Maximum Likelihood Classifier
tabularaster Tidy Tools for 'Raster' Data
tabularmaps Create Tile-Grid Geographical Maps
tabulator Efficient Tabulation with Stata-Like Output
tabulog Parsing Semi-Structured Log Files into Tabular
Format
tabxplor User-Friendly Tables with Color Helpers for
Data Exploration
tacmagic Positron Emission Tomography Time-Activity
Curve Analysis
tactile New and Extended Plots, Methods, and Panel
Functions for 'lattice'
tada Supporting Tools for Tada Science
tagcloud Tag Clouds
tagr Tagging and Organizing Objects in R
tagtools Work with Data from High-Resolution Biologging
Tags
tailDepFun Minimum Distance Estimation of Tail Dependence
Models
tailTransform Symmetric Transformation of Tails for Plotting
Differences
tailloss Estimate the Probability in the Upper Tail of
the Aggregate Loss Distribution
tailor Iterative Steps for Postprocessing Model
Predictions
tailplots Estimators and Plots for Gamma and Pareto Tail
Detection
taipan Tool for Annotating Images in Preparation for
Analysis
talib Interface to 'TA-Lib' for Technical Analysis
and Candlestick Patterns
talkr Plotting Conversation Data
tall Text Analysis for All
tamd Transcendental Algorithm for Mixtures of
Distributions
tame Timing, Anatomical, Therapeutic and Chemical
Based Medication Clustering
tanaka Design Shaded Contour Lines (or Tanaka) Maps
tangram The Grammar of Tables
tangram.pipe Row-by-Row Table Building
tapLock Seamless Single Sign-on for 'shiny'
tapkee Wrapper for 'tapkee' Dimension Reduction
Library
tapnet Trait Matching and Abundance for Predicting
Bipartite Networks
tarchetypes Archetypes for Targets
tardis Text Analysis with Rules and Dictionaries for
Inferring Sentiment
targeted Targeted Inference
targets Dynamic Function-Oriented 'Make'-Like
Declarative Pipelines
tashu Analysis and Prediction of Bicycle Rental
Amount
taskqueue Task Queue for Parallel Computing Based on
PostgreSQL
tastyR Recipe Data from 'Allrecipes.com'
tastypie Easy Pie Charts
tatest Two-Group Ta-Test
tatoo Combine and Export Data Frames
tatooheene Technology Appraisal Toolbox for Health
Economic Evaluations in the Netherlands
tau Text Analysis Utilities
tauProcess Tau Measure with Right-Censored Data
tauturri Get Data Out of 'Tautulli' (Formerly 'PlexPy')
taxa Classes for Storing and Manipulating Taxonomic
Data
taxadb A High-Performance Local Taxonomic Database
Interface
taxalight A Lightweight and Lightning-Fast Taxonomic
Naming Interface
taxdiv Taxonomic Diversity Indices Using Deng Entropy
taxize Taxonomic Information from Around the Web
taxizedb Offline Access to Taxonomic Databases
taxlist Handling Taxonomic Lists
taxnames Formatting Taxonomic Names in Markdown
taxodist Taxonomic Distance and Phylogenetic Lineage
Computation
taxonomizr Functions to Work with NCBI Accessions and
Taxonomy
tayloRswift Color Palettes Generated by Taylor Swift Albums
taylor Lyrics and Song Data for Taylor Swift's
Discography
tbd Estimation of Causal Effects with Outcomes
Truncated by Death
tbea Pre- And Post-Processing in Bayesian
Evolutionary Analyses
tbl2xts Convert Tibbles or Data Frames to Xts Easily
tbm Transformation Boosting Machines
tboot Tilted Bootstrap
tbrf Time-Based Rolling Functions
tceper Access the 'Open Data API' of Pernambuco Court
of Accounts
tcftt Two-Sample Tests for Skewed Data
tcgaViz Visualization Tool for the Cancer Genome Atlas
Program (TCGA)
tci Target Controlled Infusion (TCI)
tcl Testing in Conditional Likelihood Context
tcltk2 Tcl/Tk Additions
tclust Robust Trimmed Clustering
tcpl ToxCast Data Analysis Pipeline
tcplfit2 A Concentration-Response Modeling Utility
tcv Determining the Number of Factors in Poisson
Factor Models via Thinning Cross-Validation
tcxr Parse and Analyze TCX Files
td Access to the 'twelvedata' Financial Data API
tdPRC Time-Dependent Precision-Recall Curve
Estimation for Right-Censored Data
tdROC Nonparametric Estimation of Time-Dependent ROC,
Brier Score, and Survival Difference from Right
Censored Time-to-Event Data with or without
Competing Risks
tdarec A 'recipes' Extension for Persistent Homology
and Its Vectorizations
tdata Prepare Your Time-Series Data for Further
Analysis
tdaunif Uniform Manifold Samplers for Topological Data
Analysis
tdcmStan Automating the Creation of Stan Code for TDCMs
tdigest Wicked Fast, Accurate Quantiles Using t-Digests
tdr Target Diagram
tdsa Time-Dependent Sensitivity Analysis
tdsc Time Domain Signal Coding
tdthap TDT Tests for Extended Haplotypes
tea Threshold Estimation Approaches
teal Exploratory Web Apps for Analyzing Clinical
Trials Data
teal.code Code Storage and Execution Class for 'teal'
Applications
teal.data Data Model for 'teal' Applications
teal.logger Logging Setup for the 'teal' Family of Packages
teal.modules.clinical 'teal' Modules for Standard Clinical Outputs
teal.modules.general General Modules for 'teal' Applications
teal.picks Dataset and Variable Picker and Merge Module
for 'teal' Applications
teal.reporter Reporting Tools for 'shiny' Modules
teal.slice Filter Module for 'teal' Applications
teal.transform Functions for Extracting and Merging Data in
the 'teal' Framework
teal.widgets 'shiny' Widgets for 'teal' Applications
tealeaves Solve for Leaf Temperature Using Energy Balance
teamcolors Color Palettes for Pro Sports Teams
tectonicr Analyzing the Orientation of Maximum Horizontal
Stress
teems Trade and Environment Equilibrium Modeling
System
tehtuner Fit and Tune Models to Detect Treatment Effect
Heterogeneity
teigen Model-Based Clustering and Classification with
the Multivariate t Distribution
telegram R Wrapper Around the Telegram Bot API
telegram.bot Develop a 'Telegram Bot' with R
telegramR Interact with the 'Telegram' 'MTProto' API
telemetR Filter and Analyze Generalised Telemetry Data
from Organisms
telescope Bayesian Mixtures with an Unknown Number of
Components
telraamStats Retrieval and Visualization of Mobility Data
from 'Telraam' Sensors
tempR Temporal Sensory Data Analysis
tempdisagg Methods for Temporal Disaggregation and
Interpolation of Time Series
temperatureresponse Temperature Response
templateICAr Estimate Brain Networks and Connectivity with
ICA and Empirical Priors
templates A System for Working with Templates
templr MASCOTNUM / RT-UQ Algorithms Template Tools
tempodisco Temporal Discounting Models
tempted Temporal Tensor Decomposition, a Dimensionality
Reduction Tool for Longitudinal Multivariate
Data
tenispolaR Provides ZENIT-POLAR Substitution Cipher Method
of Encryption
tenm Temporal Ecological Niche Models
tensor Tensor Product of Arrays
tensorA Advanced Tensor Arithmetic with Named Indices
tensorBF Bayesian Tensor Factorization
tensorBSS Blind Source Separation Methods for
Tensor-Valued Observations
tensorMiss Handle Missing Tensor Data with C++ Integration
tensorTS Factor and Autoregressive Models for Tensor
Time Series
tensorflow R Interface to 'TensorFlow'
tensorregress Supervised Tensor Decomposition with Side
Information
tensorsparse Multiway Clustering via Tensor Block Models
tensr Covariance Inference and Decompositions for
Tensor Datasets
tepr Transcription Elongation Profiling
tergm Fit, Simulate and Diagnose Models for Network
Evolution Based on Exponential-Family Random
Graph Models
tergmLite Fast Simulation of Simple Temporal Exponential
Random Graph Models
tergo Style Your Code Fast
term Create, Manipulate and Query Parameter Terms
terminaldigits Tests of Uniformity and Independence for
Terminal Digits
terminalgraphics Graphical Output in Terminals
tern Create Common TLGs Used in Clinical Trials
tern.gee Tables and Graphs for Generalized Estimating
Equations (GEE) Model Fits
tern.mmrm Tables and Graphs for Mixed Models for Repeated
Measures (MMRM)
ternvis Visualisation, Verification and Calibration of
Ternary Probabilistic Forecasts
terra Spatial Data Analysis
terrainmeshr Triangulate and Simplify 3D Terrain Meshes
terrainr Landscape Visualizations in R and 'Unity'
terralink Connectivity Corridor Optimization for Raster
and Vector Data
tesouror Access Brazilian National Treasury Open Data
APIs
tesselle Easily Install and Load 'tesselle' Packages
tesseract Open Source OCR Engine
test.assessr Assessing Package Test Reliability and Quality
test2norm Normative Standards for Cognitive Tests
testCompareR Comparing Two Diagnostic Tests with Dichotomous
Results using Paired Data
testDriveR Teaching Data for Statistics and Data Science
testarguments Test (Multiple) Arguments of a User-Defined
Prediction Algorithm
testassay A Hypothesis Testing Framework for Validating
an Assay for Precision
testcorr Testing Zero Correlation
testdat Data Unit Testing for R
testequavar Bootstrap Tests for Equality of 2, 3, or 4
Population Variances
tester Tests and Checks Characteristics of R Objects
testex Add Tests to Examples
testforDEP Dependence Tests for Two Variables
testit A Simple Package for Testing R Packages
testthat Unit Testing for R
testthatdocs Automated and Idempotent Unit Tests
Documentation for Reproducible Quality
Assurance
testthatmulti Testing for R Packages with Multiple Attempts
for Noisy Tests
testthis Utils and 'RStudio' Addins to Make Testing Even
More Fun
testtwice Testing One Hypothesis Twice in Observational
Studies
tetRys Game of 'tetRys'
tetraclasse Satisfaction Analysis using Tetraclasse Model
and Llosa Matrix
tetragon Automatic Sequence Prediction by Expansion of
the Distance Matrix
tetrascatt Acoustic Scattering for Complex Shapes by Using
the DWBA
texPreview Compile and Preview Snippets of 'LaTeX'
texanshootR Reproducible Audit Trails for Indefensible
Research
texmex Statistical Modelling of Extreme Values
texor Converting 'LaTeX' 'R Journal' Articles into
'RJ-web-articles'
texreg Conversion of R Regression Output to LaTeX or
HTML Tables
text Analyses of Text using Transformers Models from
HuggingFace, Natural Language Processing and
Machine Learning
text.alignment Text Alignment with Smith-Waterman
text2emotion Emotion Analysis and Emoji Mapping for Text
text2map R Tools for Text Matrices, Embeddings, and
Networks
text2sdg Detecting UN Sustainable Development Goals in
Text
text2sdgData Contains the Trained 'text2sdg' Ensemble Model
Data
text2vec Modern Text Mining Framework for R
textAnnotatoR Interactive Text Annotation Tool with 'shiny'
GUI
textBoxPlacement Compute a Non-Overlapping Layout of Text Boxes
to Label Multiple Overlain Plots
textTinyR Text Processing for Small or Big Data Files
textTools Functions for Text Cleansing and Text Analysis
textab Create Highly-Customized 'LaTeX' Tables
textanalyzer 'textanalyzer', an R Package to Analyze Text
textcat N-Gram Based Text Categorization
textclean Text Cleaning Tools
textdata Download and Load Various Text Datasets
texter An Easy Text and Sentiment Analysis Library
textir Inverse Regression for Text Analysis
textmineR Functions for Text Mining and Topic Modeling
textometry Textual Data Analysis Package Used by the TXM
Software
textplot Text Plots
textpress A Lightweight and Versatile NLP Toolkit
textrank Summarize Text by Ranking Sentences and Finding
Keywords
textrar Interface to 'TexTra' from R
textrecipes Extra 'Recipes' for Text Processing
textreg n-Gram Text Regression, aka Concise Comparative
Summarization
textreuse Detect Text Reuse and Document Similarity
textshape Tools for Reshaping Text
textshaping Bindings to the 'HarfBuzz' and 'Fribidi'
Libraries for Text Shaping
textstem Tools for Stemming and Lemmatizing Text
textutils Utilities for Handling Strings and Text
tf S3 Classes and Methods for Tidy Functional Data
tfCox Fits Piecewise Polynomial with Data-Adaptive
Knots in Cox Model
tfNeuralODE Create Neural Ordinary Differential Equations
with 'tensorflow'
tfaddons Interface to 'TensorFlow SIG Addons'
tfarima Transfer Function and ARIMA Models
tfautograph Autograph R for 'Tensorflow'
tfdatasets Interface to 'TensorFlow' Datasets
tfdeploy Deploy 'TensorFlow' Models
tfer Forensic Glass Transfer Probabilities
tfestimators Interface to 'TensorFlow' Estimators
tfevents Write Events for 'TensorBoard'
tfhub Interface to 'TensorFlow' Hub
tfio Interface to 'TensorFlow IO'
tflmetaR Manage Annotation Metadata in Statistical
Outputs
tfprobability Interface to 'TensorFlow Probability'
tframe Time Frame Coding Kernel
tfrmt Applies Display Metadata to Analysis Results
Datasets
tfrmtbuilder 'shiny' App Companion to the 'tfrmt' Package
tfruns Training Run Tools for 'TensorFlow'
tgamtheme Globe and Mail Graphics Theme for 'ggplot2'
tgcd Thermoluminescence Glow Curve Deconvolution
tggd The Standard Distribution Functions for the
Truncated Generalised Gamma Distribution
tglkmeans Efficient Implementation of K-Means++ Algorithm
tgml Tree Guided Machine Learning for Personalized
Predictions and Precision Diagnostics
tgp Bayesian Treed Gaussian Process Models
tgram Compute and Plot Tracheidograms
tgstat Amos Tanay's Group High Performance Statistical
Utilities
thames Truncated Harmonic Mean Estimator of the
Marginal Likelihood
thamesmix Truncated Harmonic Mean Estimator of the
Marginal Likelihood for Mixtures
thankr Find Out Who Maintains the Packages you Use
theRefdate Simple and Fast Date Manipulation on Character
Strings in Format 'DD.MM.YYYY'
theft Tools for Handling Extraction of Features from
Time Series
theftdlc Analyse and Interpret Time Series Features
theiaR Download and Manage Data from Theia
thematic Unified and Automatic 'Theming' of 'ggplot2',
'lattice', and 'base' R Graphics
themis Extra Recipes Steps for Dealing with Unbalanced
Data
theorytools FAIR Theory Construction
thermocouple Temperature Measurement with Thermocouples, RTD
and IC Sensors
thestats R Package for Exploring Turkish Higher
Education Statistics
thgenetics Genetic Rare Variants Tests
thief Temporal Hierarchical Forecasting
thinkr Tools for Cleaning Up Messy Files
thinr Binary Image Thinning Algorithms
this.path Get Executing Script's Path
thisplot Utility Functions for Plotting
thisutils Collection of Utility Functions for Data
Analysis and Computing
thor Interface to 'LMDB'
thorn 'HTMLwidgets' Displaying Some 'WebGL' Shaders
thredds Crawler for Navigating THREDDS Catalogs
threeBrain Your Advanced 3D Brain Visualization
threejs Interactive 3D Scatter Plots, Networks and
Globes
threesixtygiving Download Charitable Grants from the '360Giving'
Platform
threewords Represent Precise Coordinates in Three Words
threg Threshold Regression
thregI Threshold Regression for Interval-Censored Data
with a Cure Rate Option
threshr Threshold Selection and Uncertainty for Extreme
Value Analysis
thriftr Apache Thrift Client Server
thunder Computation and Visualisation of Atmospheric
Convective Parameters
thurstonianIRT Thurstonian IRT Models
tibble Simple Data Frames
tibbletime Time Aware Tibbles
tibblify Rectangle Nested Lists
tican Plot and Analyse Time-Intensity Data
tickr Consistent Axis Tick Marks
tictactoe Tic-Tac-Toe Game
tictoc Functions for Timing R Scripts, as Well as
Implementations of "Stack" and "StackList"
Structures
tidier Enhanced 'mutate'
tidyAML Automatic Machine Learning with 'tidymodels'
tidyBdE Retrieve Data from 'Banco de España'
tidyCDISC Quick Table Generation & Exploratory Analyses
on ADaM-Ish Datasets
tidyCpp Tidy C++ Header-Only Definitions for Parts of
the C API of R
tidyDenovix Cleans Spectrophotometry Data Obtained from the
Denovix DS-11 Instrument
tidyEdSurvey Integration of 'dplyr' and 'ggplot2' with
'EdSurvey'
tidyEmoji Discover, Count and Score Emoji in Text
tidyGenR Tidy Multilocus Amplicon Genotypes
tidyHeatmap A Tidy Implementation of Heatmap
tidyILD Tidy Intensive Longitudinal Data Analysis
tidyLPA Easily Carry Out Latent Profile Analysis (LPA)
Using Open-Source or Commercial Software
tidyMC Monte Carlo Simulations Made Easy and Tidy
tidyOhdsiSolutions Tidy Utilities for Observational Medical
Outcomes Partnership Common Data Model
Workflows
tidyREDCap Helper Functions for Working with 'REDCap' Data
tidyRSS Tidy RSS for R
tidySEM Tidy Structural Equation Modeling
tidySummaries Tidy Statistical Summaries for Exploratory Data
Analysis
tidyactuarial Tidy Tools for Actuarial Mathematics and Life
Contingencies
tidyaudit Pipeline Audit Trails and Data Diagnostics for
'tidyverse' Workflows
tidybayes Tidy Data and 'Geoms' for Bayesian Models
tidybins Make Tidy Bins
tidyboot Tidyverse-Compatible Bootstrapping
tidycat Expand Tidy Output for Categorical Parameter
Estimates
tidycensus Load US Census Boundary and Attribute Data as
'tidyverse' and 'sf'-Ready Data Frames
tidycensuskr Easy Access for South Korea Census Data and
Boundaries
tidychangepoint A Tidy Framework for Changepoint Detection
Analysis
tidycharts Generate Tidy Charts Inspired by 'IBCS'
tidyclust A Common API to Clustering
tidycmprsk Competing Risks Estimation
tidycomm Data Modification and Analysis for
Communication Research
tidycorrgram Tidy Correlation Matrices and 'ggplot2'
Correlograms
tidycountries Access and Manipulate Comprehensive Country
Level Data in Tidy Format
tidycwl Tidy Common Workflow Language Tools and
Workflows
tidydann Add the 'dann' Model and the 'sub_dann' Model
to the Tidymodels Ecosystem
tidydatatutor Send Your R Code to 'Tidy Data Tutor'
tidydelta Estimation of Standard Errors using Delta
Method
tidydfidx Indexed 'tibble' and Methods for 'dplyr'
tidydice Simulates Dice Rolls and Coin Flips
tidydp Tidy Differential Privacy
tidydr Unify Dimensionality Reduction Results
tidyedgar Tidy Fundamental Financial Data from 'SEC's
'EDGAR' 'API'
tidyestimate A Tidy Implementation of 'ESTIMATE'
tidyextreme A Tidy Toolbox for Climate Extreme Indices
tidyfast Fast Tidying of Data
tidyfinance Tidy Finance Helper Functions
tidyfit Regularized Linear Modeling with Tidy Data
tidyfst Tidy Verbs for Fast Data Manipulation
tidyft Fast and Memory Efficient Data Operations in
Tidy Syntax
tidyfun Tidy Functional Data Wrangling and
Visualization
tidygam Tidy Prediction and Plotting of Generalised
Additive Models
tidygapminder Easily Tidy Gapminder Datasets
tidygate Interactively Gate Points
tidygeoRSS Tidy GeoRSS
tidygeocoder Geocoding Made Easy
tidygraph A Tidy API for Graph Manipulation
tidyheatmaps Heatmaps from Tidy Data
tidyhte Tidy Estimation of Heterogeneous Treatment
Effects
tidyhydat Extract and Tidy Canadian 'Hydrometric' Data
tidyjson Tidy Complex 'JSON'
tidyklips Load Korea Labor & Income Panel Study (KLIPS)
Data as Data Frames
tidylaslog Tidy Import, Indexing, and Export of LAS Well
Log Data
tidylda Latent Dirichlet Allocation Using 'tidyverse'
Conventions
tidylearn A Unified Tidy Interface to R's Machine
Learning Ecosystem
tidyllm Tidy Integration of Large Language Models
tidylo Weighted Tidy Log Odds Ratio
tidylog Logging for 'dplyr' and 'tidyr' Functions
tidymodels Easily Install and Load the 'Tidymodels'
Packages
tidymodlr An R6 Class to Perform Analysis on Long Tidy
Data
tidyna NA-Aware Defaults for Common R Functions
tidync A Tidy Approach to 'NetCDF' Data Exploration
and Extraction
tidynorm Tools for Tidy Vowel Normalization
tidypaleo Tidy Tools for Paleoenvironmental Archives
tidyplate Transform Microplate Data into Tibbles
tidyplots Tidy Plots for Scientific Papers
tidyplus Additional 'tidyverse' Functions
tidypmc Parse Full Text XML Documents from PubMed
Central
tidypopgen Tidy Population Genetics
tidyposterior Bayesian Analysis to Compare Models using
Resampling Statistics
tidypredict Run Predictions Inside the Database
tidyprompt Prompt Large Language Models and Enhance Their
Functionality
tidyquant Tidy Quantitative Financial Analysis
tidyquery Query 'R' Data Frames with 'SQL'
tidyr Tidy Messy Data
tidyrates Tidy Epidemiological Rates
tidyrgee 'tidyverse' Methods for 'Earth Engine'
tidyrhrv Read, Iteratively Filter, and Analyze Multiple
ECG Datasets
tidyrstats Tidy Common R Statistical Functions
tidyrules Utilities to Retrieve Rulelists from Model
Fits, Filter, Prune, Reorder and Predict on
Unseen Data
tidysdm Species Distribution Models with Tidymodels
tidyselect Select from a Set of Strings
tidyseurat Brings Seurat to the Tidyverse
tidysmd Tidy Standardized Mean Differences
tidyspec Spectroscopy Analysis Using the Tidy Data
Philosophy
tidysq Tidy Processing and Analysis of Biological
Sequences
tidystats Save Output of Statistical Tests
tidystopwords Customisable Stop-Words in 110 Languages
tidystringdist String Distance Calculation with Tidy Data
Principles
tidysummary An Elegant Approach to Summarizing Clinical
Data
tidysynth A Tidy Implementation of the Synthetic Control
Method
tidysynthesis A Common API for Synthesizing Data
tidytable Tidy Interface to 'data.table'
tidyterra 'tidyverse' Methods and 'ggplot2' Helpers for
'terra' Objects
tidytext Text Mining using 'dplyr', 'ggplot2', and Other
Tidy Tools
tidytitanic Dataframes Based on Titanic Passengers and Crew
tidytlg Create TLGs using the 'tidyverse'
tidytransit Read, Validate, Analyze, and Map GTFS Feeds
tidytreatment Tidy Methods for Bayesian Treatment Effect
Models
tidytree A Tidy Tool for Phylogenetic Tree Data
Manipulation
tidyttmoment Functional Trait Moment Calculation
tidytuesdayR Access the Weekly 'TidyTuesday' Project Dataset
tidyusmacro Downloading and Cleaning U.S. Macroeconomic
Data
tidyverse Easily Install and Load the 'Tidyverse'
tidyvpc VPC Percentiles and Prediction Intervals
tidywater Water Quality Models for Drinking Water
Treatment Processes
tidyweather Analysis the Weather Data for Agriculture
tidywikidatar Explore 'Wikidata' Through Tidy Data Frames
tidyxl Read Untidy Excel Files
tiff Read and Write TIFF Images
tigerhitteR Pre-Process of Time Series Data Set in R
tigers Integration of Geography, Environment, and
Remote Sensing
tigger Infers Novel Immunoglobulin Alleles from
Sequencing Data
tightClust Tight Clustering
tightenBlock Tightens an Observational Block Design by
Balanced Subset Matching
tigreBrowserWriter 'tigreBrowser' Database Writer
tigris Load Census TIGER/Line Shapefiles
tikatuwq Water Quality Assessment and Environmental
Compliance in Brazil
tiktokadsR Access to TikTok Ads via the 'Windsor.ai' API
tikzDevice R Graphics Output in LaTeX Format
tiledb Modern Database Engine for Complex Data Based
on Multi-Dimensional Arrays
tilegramsR R Spatial Data for Tilegrams
tilemaps Generate Tile Maps
tiler Create Geographic and Non-Geographic Map Tiles
tilting Variable Selection via Tilted Correlation
Screening Algorithm
timbeR Calculate Wood Volumes from Taper Functions
timbr Forest/Tree Data Frames
timeDF Subset and Flag Data Frames with Times by the
Use of Periods
timeDate Rmetrics - Chronological and Calendar Objects
timeEL Time to Event Analysis via Empirical Likelihood
Inference
timeLineGraphics HTML with Horizontal Strips Symbolizing Events
in a Person's Life
timeROC Time-Dependent ROC Curve and AUC for Censored
Survival Data
timeSeries Financial Time Series Objects (Rmetrics)
timeSeriesDataSets Time Series Data Sets
timechange Efficient Manipulation of Date-Times
timechecker Visualization of Processing Time with Standard
Output
timedelay Time Delay Estimation for Stochastic Time
Series of Gravitationally Lensed Quasars
timedeppar Infer Constant and Stochastic, Time-Dependent
Model Parameters
timefully Time-Series Management Made Easy
timeordered Time-Ordered and Time-Aggregated Network
Analyses
timeperiodsR Simple Definition Of Time Intervals
timeplyr Fast Tidy Tools for Date and Date-Time
Manipulation
timereg Flexible Regression Models for Survival Data
timetk A Tool Kit for Working with Time Series
timetools Seasonal/Sequential (Instants/Durations, Even
or not) Time Series
timevarcorr Time Varying Correlation
timevis Create Interactive Timeline Visualizations in R
timsac Time Series Analysis and Control Package
tind A Common Representation of Time Indices of
Different Types
tinkr Cast '(R)Markdown' Files to 'XML' and Back
Again
tinsel Transform Functions using Decorators
tint 'tint' is not 'Tufte'
tinter Generate a Monochromatic Palette
tintin Tintin Palette Generator
tinyVAST Multivariate Spatio-Temporal Models using
Structural Equations
tinyarray Expression Data Analysis and Visualization
tinycodet Functions to Help in your Coding Etiquette
tinydng 'TinyDNG' C++ Header Files
tinyimg Optimize and Compress Images
tinylabels Lightweight Variable Labels
tinylens Minimal Implementation of Functional Lenses
tinyoauth Minimal OAuth 2.0 Client
tinypkgr Minimal R Package Development Utilities
tinyplot Lightweight Extension of the Base R Graphics
System
tinyrox Minimal R Documentation Generator
tinyscholar Get and Show Personal 'Google Scholar' Profile
tinyshinyserver Tiny 'shiny' Server - Lightweight Multi-App
'shiny' Proxy
tinysnapshot Snapshots for Unit Tests using the 'tinytest'
Framework
tinyspotifyr Tinyverse R Wrapper for the 'Spotify' Web API
tinytable Simple and Configurable Tables in 'HTML',
'LaTeX', 'Markdown', 'Word', 'PNG', 'PDF', and
'Typst' Formats
tinytest Lightweight and Feature Complete Unit Testing
Framework
tinytest2JUnit Convert 'tinytest' Output to JUnit XML
tinytex Helper Functions to Install and Maintain TeX
Live, and Compile LaTeX Documents
tinythemes Lightweight Repackaging of 'Themes' for
'ggplot2'
tinytiger Lightweight Interface to TIGER/Line Shapefiles
tip Bayesian Clustering Using the Table Invitation
Prior (TIP)
tipa Tau-Independent Phase Analysis for Circadian
Time-Course Data
tipitaka Data and Tools for Analyzing the Pali Canon
tipitaka.critical Lemmatized Critical Edition of the Pali Canon
tipmap Tipping Point Analysis for Bayesian Dynamic
Borrowing
tippy Add Tooltips to 'R markdown' Documents or
'Shiny' Apps
tipr Tipping Point Analyses
tipse Tipping Point Analysis for Survival Endpoints
tirt Testlet Item Response Theory
tis Time Indexes and Time Indexed Series
tissot Tissot Indicatrix for Map Projection Distortion
titanic Titanic Passenger Survival Data Set
titeIR Isotonic Designs for Phase 1 Trials with
Late-Onset Toxicities
titrationCurves Acid/Base, Complexation, Redox, and
Precipitation Titration Curves
tkImgR Simple Image Viewer for R Using the 'tcltk'
Package
tkRplotR Display Resizable Plots
tkWidgets R based tk widgets
tkrplot TK Rplot
tlars The T-LARS Algorithm: Early-Terminated Forward
Variable Selection
tlda Tools for Language Data Analysis
tldr T Loux Doing R: Functions to Simplify Data
Analysis and Reporting
tldrDocs Provide 'tldrPages' Documentation for Base R
Functions
tlgarima The Topp–Leone Garima Distribution
tlm Effects under Linear, Logistic and Poisson
Regression Models with Transformed Variables
tlrmvnmvt Low-Rank Methods for MVN and MVT Probabilities
tls Tools of Total Least Squares in
Error-in-Variables Models
tlsR Detection and Spatial Analysis of Tertiary
Lymphoid Structures
tm Text Mining Package
tm.plugin.alceste Import Texts from Files in the 'Alceste' Format
Using the 'tm' Text Mining Framework
tm.plugin.dc Text Mining Distributed Corpus Plug-in
tm.plugin.europresse Import Articles from 'Europresse' Using the
'tm' Text Mining Framework
tm.plugin.factiva Import Articles from 'Factiva' Using the 'tm'
Text Mining Framework
tm.plugin.koRpus Full Corpus Support for the 'koRpus' Package
tm.plugin.lexisnexis Import Articles from 'LexisNexis' Using the
'tm' Text Mining Framework
tm.plugin.mail Text Mining E-Mail Plug-in
tm1r The Integration Between 'IBM COGNOS TM1' and R
tma Transmodal Analysis (TMA)
tmap Thematic Maps
tmap.cartogram Extension to 'tmap' for Creating Cartograms
tmap.glyphs Extension to 'tmap' for Creating Glyphs
tmap.mapgl Extensions to 'tmap' with Two New Modes:
'mapbox' and 'maplibre'
tmap.networks Extension to 'tmap' for Creating Network
Visualizations
tmap.sources Data Sources for 'tmap'
tmaptools Thematic Map Tools
tmapverse Meta-Package for Thematic Mapping with 'tmap'
tmbstan MCMC Sampling from 'TMB' Model Object using
'Stan'
tmcn A Text Mining Toolkit for Chinese
tmfast Fast Topic Models Using Varimax
tmle Targeted Maximum Likelihood Estimation
tmod Feature Set Enrichment Analysis for
Metabolomics and Transcriptomics
tmplate Code Generation Based on Templates
tmpm Trauma Mortality Prediction Model
tmsens Sensitivity Analysis Using the Trimmed Means
Estimator
tmt Estimation of the Rasch Model for Multistage
Tests
tmvmixnorm Sampling from Truncated Multivariate Normal and
t Distributions
tmvnsim Truncated Multivariate Normal Simulation
tmvtnorm Truncated Multivariate Normal and Student t
Distribution
tmvtnsim Truncated Multivariate Normal and t
Distribution Simulation
tna Transition Network Analysis (TNA)
tndata Fetch Datasets from the Official Tunisian Data
Catalog
tnet Weighted, Two-Mode, and Longitudinal Networks
Analysis
toOrdinal Cardinal to Ordinal Number & Date Conversion
toastui Interactive Tables, Calendars and Charts for
the Web
todor Find All TODO Comments and More
togglr 'Toggl.com' Api for 'Rstudio'
tokenbrowser Create Full Text Browsers from Annotated Token
Lists
tokenizers Fast, Consistent Tokenization of Natural
Language Text
tokenizers.bpe Byte Pair Encoding Text Tokenization
tolerance Statistical Tolerance Intervals and Regions
tomba Official R Library for Tomba Email Finder
toml Read, Write, and Modify TOML Files
tomledit Parse, Read, and Edit 'TOML'
tongfen Make Data Based on Different Geographies
Comparable
toolStability Tool for Stability Indices Calculation
toolbox List, String, and Meta Programming Utility
Functions
toolero A Toolkit for Research Workflows
toolmaRk Tests for Same-Source of Toolmarks
tools4uplift Tools for Uplift Modeling
toon Token-Oriented Object Notation (TOON)
toonlite Read, Write, Validate, Stream, and Convert TOON
Data
topChef Top Chef Data
topcc Topological Correlation Coefficient
topdowntimeratio Top-Down Time Ratio Segmentation for Coordinate
Trajectories
topicdoc Topic-Specific Diagnostics for LDA and CTM
Topic Models
topiclabels Automated Topic Labeling with Language Models
topicmodels Topic Models
topicmodels.etm Topic Modelling in Embedding Spaces
topics Creating and Significance Testing Language
Features for Visualisation
topoDistance Calculating Topographic Paths and Distances
topologyGSA Gene Set Analysis Exploiting Pathway Topology
topologyR Topological Connectivity Analysis for Numeric
Data
topolow Force-Directed Euclidean Embedding of
Dissimilarity Data
toponym Analyze and Visualize Toponyms
toporanga Topological Sort-Based Hierarchy Inference
toposort Topological Sorting Algorithms
topr Create Custom Plots for Viewing Genetic
Association Results
toprdata Gene and Exon Data from Ensembl
topsis TOPSIS method for multiple-criteria decision
making (MCDM)
tor Import Multiple Files From a Single Directory
at Once
torch Tensors and Neural Networks with 'GPU'
Acceleration
torchMAUM Multi-Class Area Under the Minimum in Torch
torchdatasets Ready to Use Extra Datasets for Torch
torchopt Advanced Optimizers for Torch
torchvision Models, Datasets and Transformations for Images
torchvisionlib Additional Operators for Image Models
tornado Plots for Model Sensitivity and Variable
Importance
toro Interactive & Customisable Maps using the
'MapLibre GL JS' Library
tosca Tools for Statistical Content Analysis
toscca Thresholded Ordered Sparse CCA
toscmask Improved Versions of Base Functions
toscutil Utility Functions
tost.suite Two One-Sided Tests for Equivalence
totalcensus Extract Decennial Census and American Community
Survey Data
touRnamentofchampions Tournament of Champions Data
touch Tools of Utilization and Cost in Healthcare
tourr Tour Methods for Multivariate Data
Visualisation
tout Optimal Sample Size and Progression Criteria
for Three-Outcome Trials
tower Easy Middle Ware Library for 'shiny'
toweranNA A Method for Handling Missing Values in
Prediction Applications
toxEval Exploring Biological Relevance of Environmental
Chemistry Observations
toxSummary Visualize and Summarize Repeat-Dose Toxicology
Study Results
toxdrc Pipeline for Dose-Response Curve Analysis
toxpiR Create ToxPi Prioritization Models
tpc Tiered PC Algorithm
tpfp Counts the Number of True Positives and False
Positives
tpglp Three-Parameter Generalized Lindley-Poisson
Distribution Functions
tpm FHWA TPM Score Calculation Functions
tpn Truncated Positive Normal Model and Extensions
tpr Temporal Process Regression
tptest Universal Turning Point and Inflection Point
Tests
tpwb The Three Parameter Weibull Distribution
tqk Get Financial Data in Korea
tr.iatgen Translate 'iatgen' Generated QSF Files
trace Tandem Repeat Analysis by Capillary
Electrophoresis
tracee Easily Save Output and Trace it Back to Code
tracenma Database for Developing Transitivity
Methodology in Network Meta-Analysis
tracer Slick Call Stacks
tracerer Tracer from R
tracheideR Standardize Tracheidograms
track2KBA Identifying Important Areas from Animal
Tracking Data
trackdem Particle Tracking and Demography
trackdf Data Frame Class for Tracking Data
trackdown Collaborative Editing of Rmd (or Rnw) Documents
in Google Drive
trackeR Infrastructure for Running, Cycling and
Swimming Data from GPS-Enabled Tracking Devices
trackeRapp Interface for the Analysis of Running, Cycling
and Swimming Data from GPS-Enabled Tracking
Devices
trackopt Track Numerical Optimization
tractor.base Read, Manipulate and Visualise Magnetic
Resonance Images
trade Tools for Trade Practitioners
tradeoffaucdim Plotting Trade-Off AUC-Dimensionality
tradepolicy Replication of 'An Advanced Guide To Trade
Policy Analysis'
tradestatistics Open Trade Statistics API Wrapper and Utility
Program
trafficCAR Bayesian CAR Models for Road-Segment Traffic
trainR An Interface to the National Rail Enquiries
Systems
traineR Predictive (Classification and Regression)
Models Homologator
trainsplit Split a Dataframe, Tibble, or Data.table into
Training and Test Sets
traipse Shared Tools for Tracking Data
traits Species Trait Data from Around the Web
traitstrap Bootstrap Trait Values to Calculate Moments
traj Feature-Based Clustering of Longitudinal
Trajectories
trajeR Group Based Modeling Trajectory
trajectories Classes and Methods for Trajectory Data
trajmsm Marginal Structural Models with Latent Class
Growth Analysis of Treatment Trajectories
trajr Animal Trajectory Analysis
traktok Collecting 'TikTok' Data
tram Transformation Models
tramME Transformation Models with Mixed Effects
tramicp Model-Based Causal Feature Selection for
General Response Types
tramnet Penalized Transformation Models
tramvs Optimal Subset Selection for Transformation
Models
tranSurv Transformation-Based Regression under Dependent
Truncation
transDA Transformation Discriminant Analysis
transGFM Transfer Learning for Generalized Factor Models
transPlotR Visualize Transcript Structures in Elegant Way
transfR Transfer of Hydrograph from Gauged to Ungauged
Catchments
transforEmotion Sentiment Analysis for Text, Image and Video
using Transformer Models
transform.hazards Transforms Cumulative Hazards to Parameter
Specified by ODE System
transformer Implementation of Transformer Deep Neural
Network with Vignettes
transformerForecasting
Transformer Deep Learning Model for Time Series
Forecasting
transformmos Transform MOS Values to be Robust for using
Rank Based Statistics
transformr Polygon and Path Transformations
translate.logit Translation of Logit Regression Coefficients
into Percentages
translit.uk Ukrainian to Latin Transliteration
transltr Support Many Languages in R
transmdl Semiparametric Transformation Models
transmem Treatment of Membrane-Transport Data
transplantr Audit and Research Functions for
Transplantation
transport Computation of Optimal Transport Plans and
Wasserstein Distances
transportr Transporting Intervention Effects from One
Population to Another
transreg Penalised Regression with Multiple Sets of
Prior Effects ('Transfer Learning')
transx Transform Univariate Time Series
trapezoid The Trapezoidal Distribution
traudem Use TauDEM
traumar Calculate Metrics for Trauma System Performance
traveltimeR Interface to 'Travel Time' API
trawl Estimation and Simulation of Trawl Processes
trc Truncated Rank Correlation
trdist Univariate Proability Distributions with
Truncation
treasury Client for US Treasury XML Feed and Published
Data
treats Trees and Traits Simulations
tree Classification and Regression Trees
tree.interpreter Random Forest Prediction Decomposition and
Feature Importance Measure
tree3d 3D Tree Models
treeClust Cluster Distances Through Trees
treeDA Tree-Based Discriminant Analysis
treeDbalance Computation of 3D Tree Imbalance
treePlotArea Correction Factors for Tree Plot Areas
Intersected by Stand Boundaries
treeSS Tree-Spatial Scan Statistic for Cluster
Detection
treebalance Computation of Tree (Im)Balance Indices
treebase Discovery, Access and Manipulation of
'TreeBASE' Phylogenies
treeclim Numerical Calibration of Proxy-Climate
Relationships
treedata.table Manipulation of Matched Phylogenies and Data
using 'data.table'
treedater Fast Molecular Clock Dating of Phylogenetic
Trees with Rate Variation
treediff Testing Differences Between Families of Trees
treefit The First Software for Quantitative Trajectory
Inference
treeheatr Heatmap-Integrated Decision Tree Visualizations
treeio Base Classes and Functions for Phylogenetic
Tree Input and Output
treemap Treemap Visualization
treemapify Draw Treemaps in 'ggplot2'
treeshap Compute SHAP Values for Your Tree-Based Models
Using the 'TreeSHAP' Algorithm
treesitter Bindings to 'Tree-Sitter'
treesitter.c 'R' Bindings to the 'C' Grammar for Tree-Sitter
treesitter.r 'R' Grammar for 'Tree-Sitter'
treesliceR To Slice Phylogenetic Trees and Infer
Evolutionary Patterns Over Time
treespace Statistical Exploration of Landscapes of
Phylogenetic Trees
treestartr Generate Starting Trees for Combined Molecular,
Morphological and Stratigraphic Data
treestats Phylogenetic Tree Statistics
treestructure Detect Population Structure Within Phylogenetic
Trees
trekcolors Star Trek Color Palettes
trekfont Star Trek Fonts Collection
trelliscopejs Create Interactive Trelliscope Displays
trend Non-Parametric Trend Tests and Change-Point
Detection
trendchange Innovative Trend Analysis and Time-Series
Change Point Analysis
trendeval Evaluate Trending Models
trending Model Temporal Trends
trendsegmentR Linear Trend Segmentation
trendseries Extract Trends from Time Series
trendtestR Exploratory Trend Analysis and Visualization
for Time-Series and Grouped Data
trendyy A Tidy Wrapper Around 'gtrendsR'
triact Analyzing the Lying Behavior of Cows from
Accelerometer Data
trialr Clinical Trial Designs in 'rstan'
triangle Distribution Functions and Parameter Estimates
for the Triangle Distribution
triangulation Determine Position of Observer
tricolore A Flexible Color Scale for Ternary Compositions
triebeard 'Radix' Trees in 'Rcpp'
triggerstrategy Trigger Strategy in Clinical Trials
trigpoints Data Set of Trig Points in Great Britain in
British National Grid Coordinates
trimcluster Cluster Analysis with Trimming
trimetStops Information on all of the TriMet Stops in the
Portland Metro Area
trimr An Implementation of Common Response Time
Trimming Methods
trinROC Statistical Tests for Assessing Trinormal ROC
Data
trip Tracking Data
tripEstimation Metropolis Sampler and Supporting Functions for
Estimating Animal Movement from Archival Tags
and Satellite Fixes
tripack Triangulation of Irregularly Spaced Data
triplediff Triple-Difference Estimators
triplesmatch Match Triples Consisting of Two Controls and a
Treated Unit or Vice Versa
tripsAndDipR Identification of 2n and 3n Samples from
Amplicon Sequencing Data
triptych Diagnostic Graphics to Evaluate Forecast
Performance
troopdata Tools for Analyzing Cross-National Military
Deployment and Basing Data
tropAlgebra Tropical Algebraic Functions
trotter Pseudo-Vectors Containing All Permutations,
Combinations and Subsets of Objects Taken from
a Vector.
trouBBlme4SolveR Troubles Solver for 'lme4'
trps Bayesian Trophic Position Models using 'stan'
trtf Transformation Trees and Forests
trtswitch Treatment Switching
trud Query the 'NHS TRUD API'
truelies Bayesian Methods to Estimate the Proportion of
Liars in Coin Flip Experiments
truh Two-Sample Nonparametric Testing Under
Heterogeneity
truncAIPW Doubly Robust Estimation under
Covariate-Induced Dependent Left Truncation
truncProxy Proximal Weighting Estimation for Dependent
Left Truncation
truncSP Semi-Parametric Estimators of Truncated
Regression Models
truncdist Truncated Random Variables
truncnorm Truncated Normal Distribution
truncnormbayes Estimates Moments for a Truncated Normal
Distribution using 'Stan'
truncreg Truncated Gaussian Regression Models
trunmnt Moments of Truncated Multivariate Normal
Distribution
trust Trust Region Optimization
trustOptim Trust Region Optimization for Nonlinear
Functions with Sparse Hessians
trustedtimestamping Create Trusted Timestamps of Datasets and Files
trustmebro Inspect and Clean Subject-Generated ID Codes
and Related Data
tryCatchLog Advanced 'tryCatch()' and 'try()' Functions
tryr Client/Server Error Handling for HTTP API
Frameworks
tsBSS Blind Source Separation and Supervised
Dimension Reduction for Time Series
tsDyn Nonlinear Time Series Models with Regime
Switching
tsLSTMx Predict Time Series Using LSTM Model Including
Exogenous Variable to Denote Zero Values
tsModel Time Series Modeling for Air Pollution and
Health
tsPI Improved Prediction Intervals for ARIMA
Processes and Structural Time Series
tsSelect Execution of Time Series Models
tsallisqexp Tsallis q-Exp Distribution
tsapp Time Series, Analysis and Application
tsaux Time Series Forecasting Auxiliary Functions
tsbox Class-Agnostic Time Series
tscopula Time Series Copula Models
tscount Analysis of Count Time Series
tscv Functions and Utilities for Tidy Time Series
Forecasting and Time Series Cross-Validation
tsdataleaks Exploit Data Leakages in Time Series
Forecasting Competitions
tsdb Terribly-Simple Data Base for Time Series
tsdecomp Decomposition of Time Series Data
tsdf Two-/Three-Stage Designs for Phase 1&2 Clinical
Trials
tsdisagg2 Time Series Disaggregation
tsdistributions Location Scale Standardized Distributions
tseffects Dynamic Inferences from Time Series (with
Interactions)
tsensembler Dynamic Ensembles for Time Series Forecasting
tsentiment Fetching Tweet Data for Sentiment Analysis
tseries Time Series Analysis and Computational Finance
tseriesChaos Analysis of Nonlinear Time Series
tseriesEntropy Entropy Based Analysis and Tests for Time
Series
tseriesTARMA Analysis of Nonlinear Time Series Through
Threshold Autoregressive Moving Average Models
(TARMA) Models
tsfeatures Time Series Feature Extraction
tsfgrnn Time Series Forecasting Using GRNN
tsfknn Time Series Forecasting Using Nearest Neighbors
tsfngm Time Series Forecasting using Nonlinear Growth
Models
tsforecast Time Series Forecasting Functions
tsg Generate Publication-Ready Statistical Tables
tsgarch Univariate GARCH Models
tsgc Time Series Methods Based on Growth Curves
tsiR An Implementation of the TSIR Model
tsibble Tidy Temporal Data Frames and Tools
tsibbledata Diverse Datasets for 'tsibble'
tsibbletalk Interactive Graphics for Tsibble Objects
tsintermittent Intermittent Time Series Forecasting
tsissm Linear Innovations State Space Unobserved
Components Model
tsitter Tree-Sitter Parsing Tools
tsmarch Multivariate ARCH Models
tsmethods Time Series Methods
tsmp Time Series with Matrix Profile
tsna Tools for Temporal Social Network Analysis
tsne T-Distributed Stochastic Neighbor Embedding for
R (t-SNE)
tsnet Fitting, Comparing, and Visualizing Networks
Based on Time Series Data
tsoutliers Detection of Outliers in Time Series
tspmeta Instance Feature Calculation and Evolutionary
Instance Generation for the Traveling Salesman
Problem
tspredit Time Series Prediction with Integrated Tuning
tsqn Applications of the Qn Estimator to Time Series
(Univariate and Multivariate)
tsriadditive Two Stage Residual Inclusion Additive Hazards
Estimator
tsrobprep Robust Preprocessing of Time Series Data
tssim Simulation of Daily and Monthly Time Series
tstests Time Series Goodness of Fit and Forecast
Evaluation Tests
tstools A Time Series Toolbox for Official Statistics
tsutils Time Series Exploration, Modelling and
Forecasting
tsvio Simple Utilities for Tab-Separated-Value (TSV)
Files
tsviz Easy and Interactive Time Series Visualization
tsvr Timescale-Specific Variance Ratio for Use in
Community Ecology
tswge Time Series for Data Science
tsxtreme Bayesian Modelling of Extremal Dependence in
Time Series
ttScreening Genome-Wide DNA Methylation Sites Screening by
Use of Training and Testing Samples
ttTensor Tensor-Train Decomposition
ttbary Barycenter Methods for Spatial Point Patterns
ttbbeer US Beer Statistics from TTB
ttcg Three-Term Conjugate Gradient for Unconstrained
Optimization
ttdo Extend 'tinytest' with 'diffobj' and
'tinysnapshot'
tteICE Treatment Effect Estimation for Time-to-Event
Data with Intercurrent Events
tth TeX-to-HTML/MathML Translators TtH/TtM
ttservice A Service for Tidy Transcriptomics Software
Suite
ttt The Table Tool
tttplot Time to Target Plot
ttutils Utility Functions
tuber Client for the YouTube API
tubern R Client for the YouTube Analytics and
Reporting API
tuckerR.mmgg Three-Mode Principal Components Analysis
tufte Tufte's Styles for R Markdown Documents
tufterhandout Tufte-style html document format for rmarkdown
tugboat Build a Docker Image from a Directory or
Project
tukeytrend Tukeys Trend Test via Multiple Marginal Models
tulpaMesh Constrained Delaunay Triangulation Meshes for
Spatial 'SPDE' Models
tumgr Tumor Growth Rate Analysis
tune Tidy Tuning Tools
tuneR Analysis of Music and Speech
tuneRanger Tune Random Forest of the 'ranger' Package
turboEM A Suite of Convergence Acceleration Schemes for
EM, MM and Other Fixed-Point Algorithms
turkeyelections The Most Comprehensive R Package for Turkish
Election Results
turner Turn Vectors and Lists of Vectors into Indexed
Structures
tutorial.helpers Helper Functions for Creating Tutorials
tutorizeR Convert R Markdown or Quarto Content into
Interactive Tutorials
tv Tools for Creating Time-Varying Datasets
tvGarchKF Time-Varying Garch Models Through a State-Space
Representation
tvR Total Variation Regularization
tvReg Time-Varying Coefficient for Single and
Multi-Equation Regressions
tvcure Additive Cure Survival Model with Time-Varying
Covariates
tvdenoising Univariate Total Variation Denoising
tvem Time-Varying Effect Models
tvgarch Time Varying GARCH Modelling
tvm Time Value of Money Functions
tvmComp Discounting and Compounding Calculations for
Various Scenarios
tvmediation Time Varying Mediation Analysis
tvrmst Time-Varying Restricted Mean Survival Time from
Survival Matrices
tvtools Comprehensive Tools for Panel Data Analysis -
'tvtools'
twang Toolkit for Weighting and Analysis of
Nonequivalent Groups
twangContinuous Toolkit for Weighting and Analysis of
Nonequivalent Groups - Continuous Exposures
twangMediation Twang Causal Mediation Modeling via Weighting
twbparser Parse 'Tableau' Workbooks into Functional Data
twc Terrestrial Water Cycle
twdtw Time-Weighted Dynamic Time Warping
tweeDEseq RNA-seq data analysis using the Poisson-Tweedie
family of distributions
tweedie Evaluation of Tweedie Exponential Family Models
tweenr Interpolate Data for Smooth Animations
tweetcheck Parse and Validate Tweet Text
twenty48 Play a Game of 2048 in the Console
twig For Streamlining Decision and Economic
Evaluation Models using Grammar of Modeling
twilio An Interface to the Twilio API for R
twingp A Fast Global-Local Gaussian Process
Approximation
twinning Data Twinning
twinsvm Twin Support Vector Machines
twitteradsR Get Twitter Ads Data via the 'Windsor.ai' API
twitterwidget Render a Twitter Status in R Markdown Pages
twl Two-Way Latent Structure Clustering Model
twn Taxa Waterbeheer Nederland voor R
twoCoprimary Sample Size and Power Calculation for Two
Co-Primary Endpoints
twoPhaseGAS Two-Phase Genetic Association Study Design and
Analysis with Missing Covariates by Design
twoStageDesignTMLE Targeted Maximum Likelihood Estimation for
Two-Stage Study Design
twomodeclusteringGA Genetic Algorithm Based Two-Mode Clustering
twopartm Two-Part Model with Marginal Effects
twopexp The Two Parameter Exponential Distribution
twosamples Fast Permutation Based Two Sample Tests
twosigma DE Analysis for Single-Cell RNA-Sequencing Data
twotrials Compatible Point Estimates, Confidence
Intervals, and P-Values for Two Trials
twoway Analysis of Two-Way Tables
twowaytests Two-Way Tests in Independent Groups Designs
twoxtwo Work with Two-by-Two Tables
twscrapeR Twitter/X Scraping via Python's 'twscrape'
Library
tximport Import and summarize transcript-level estimates
for transcript- and gene-level analysis
txshift Efficient Estimation of the Causal Effects of
Stochastic Interventions
txtplot Text Based Plots
txtq A Small Message Queue for Parallel Processes
typeR Simulate Typing Script
typed Support Types for Variables, Arguments, and
Return Values
typehint Auto-Check Types, Dimensions, and Values of
Function Arguments
types Type Annotations
typetracer Trace Function Parameter Types
typr Write and Render 'Typst' Documents
typstable Better 'Typst' Tables
tzdb Time Zone Database Information
tzupdater Time Zone Database Updater
uGMAR Estimate Univariate Gaussian and Student's t
Mixture Autoregressive Models
uaparserjs Parse 'User-Agent' Strings
uavRmp UAV Mission Planner
ubair Effects of External Conditions on Air Quality
ubiquity PKPD, PBPK, and Systems Pharmacology Modeling
Tools
ubms Bayesian Models for Data from Unmarked Animals
using 'Stan'
uci Urban Centrality Index
ucie Mapping 3D Data into CIELab Color Space
ucimlrepo Explore UCI ML Repository Datasets
uclust Clustering and Classification Inference with
U-Statistics
ucminf General-Purpose Unconstrained Non-Linear
Optimization
ucminfcpp 'C++' Reimplementation of the 'ucminf'
Unconstrained Nonlinear Optimizer
udpipe Tokenization, Parts of Speech Tagging,
Lemmatization and Dependency Parsing with the
'UDPipe' 'NLP' Toolkit
udunits2 Udunits-2 Bindings for R
ufRisk Risk Measure Calculation in Financial TS
ufs A Collection of Utilities
ugatsdb Uganda Time Series Database API
ugomquantreg Quantile Regression Modeling for Unit-Gompertz
Responses
ui Uncertainty Intervals and Sensitivity Analysis
for Missing Data
uisapi Access the UNESCO Institute for Statistics API
uiucthemes 'R' 'Markdown' Themes for 'UIUC' Documents and
Presentations
uk2us Convert Words Between UK and US English
ukbabynames UK Baby Names Data
ukbflow Streamlined Workflow for UK Biobank Data
Extraction, Analysis, and Visualization
ukbnmr Removal of Unwanted Technical Variation from UK
Biobank NMR Metabolomics Biomarker Data
ukc19 Datasets from the UK COVID-19 Outbreak
ukgasapi API for UK Energy Market Information
ukhousing Access UK Housing Data from Land Registry, EPC,
and Planning
ukhsadatR R Interface to Access UKHSA Dashboard Data
ukpolice Download Data on UK Police and Crime
ulex Unique Location Extractor
ulid Generate Universally Unique 'Lexicographically'
'Sortable' Identifiers
ulrb Unsupervised Learning Based Definition of
Microbial Rare Biosphere
ultrapolaRplot Plotting Ultrasound Tongue Traces
umap Uniform Manifold Approximation and Projection
umbridge Integration for the UM-Bridge Protocol
ume Ultrahigh-Resolution Mass Spectrometry Data
Evaluation for Complex Organic Matter
umiAnalyzer Tools for Analyzing Sequencing Data with Unique
Molecular Identifiers
ump Uniformly Most Powerful Tests
umweltapir Access Umwelt.Info API
umx Structural Equation Modeling and Twin Modeling
in R
unbalhaar Function Estimation via Unbalanced Haar
Wavelets
uncertainUCDP Parametric Mixture Models for Uncertainty
Estimation of Fatalities in UCDP Conflict Data
uncertainty Uncertainty Estimation and Contribution
Analysis
uncmbb UNC Men's Basketball Match Results Since
1949-1950 Season
uncorbets Uncorrelated Bets via Minimum Torsion Algorithm
undidR Difference-in-Differences with Unpoolable Data
unexcel Revert Excel Serial Dates Back to Intended
Day.Month Numerics
unfold Mapping Hidden Geometry into Future Sequences
unglue Extract Matched Substrings Using a Pattern
ungroup Penalized Composite Link Model for Efficient
Estimation of Smooth Distributions from
Coarsely Binned Data
unhcrdown UNHCR Branded Templates for R Markdown
Documents
unhcrthemes UNHCR 'ggplot2' Theme and Colour Palettes
unheadr Handle Data with Messy Header Rows and Broken
Values
uni.shrinkage Shrinkage Estimation for Univariate Normal Mean
uni.survival.tree A Survival Tree Based on Stabilized Score Tests
for High-dimensional Covariates
uniLasso Univariate-Guided Sparse Regression
uniReg Unimodal Penalized Spline Regression using
B-Splines
uniah Unimodal Additive Hazards Model
unicefData Download Indicators from UNICEF Data Warehouse
unicol The Colors of your University
unifDAG Uniform Sampling of Directed Acyclic Graphs
unifed The Unifed Distribution
unifiedml Unified Interface for Machine Learning Models
unifir A Unifying API for Calling the 'Unity' '3D'
Video Game Engine
uniformly Uniform Sampling
unifyR Unified Scores, Reliabilities and Validities
from Multiple Tests
unigd Universal Graphics Device
unikn Graphical Elements of the University of
Konstanz's Corporate Design
uniqtag Abbreviate Strings to Short, Unique Identifiers
unisensR Read 'Unisens' Data
unitcm Client for the 'UniTCM' Traditional Chinese
Medicine Platform
unitedR Assessment and Evaluation of Formations in
United
unitizer Interactive R Unit Tests
unitquantreg Parametric Quantile Regression Models for
Bounded Data
unitrootests Comprehensive Unit Root and Stationarity Tests
units Measurement Units for R Vectors
unittest TAP-Compliant Unit Testing
unityForest Improving Interaction Modelling and
Interpretability in Random Forests
univOutl Detection of Univariate Outliers
unival Assessing Essential Unidimensionality Using
External Validity Information
univariateML Maximum Likelihood Estimation for Univariate
Densities
universals S3 Generics for Bayesian Analyses
unix POSIX System Utilities
unjoin Separate a Data Frame by Normalization
unmarked Models for Data from Unmarked Animals
unmconf Modeling with Unmeasured Confounding
unnest Unnest Hierarchical Data Structures
unpivotr Unpivot Complex and Irregular Data Layouts
unrepx Analysis and Graphics for Unreplicated
Experiments
unrtf Extract Text from Rich Text Format (RTF)
Documents
unstruwwel Detect and Parse Historic Dates
unsum Reconstruct Raw Data from Summary Statistics
unsurv Unsupervised Clustering of Individualized
Survival Curves
unsystation Stationarity Test Based on Unsystematic
Sub-Sampling
untb Ecological Drift under the UNTB
unusualprofile Calculates Conditional Mahalanobis Distances
unvotes United Nations General Assembly Voting Data
unvs.med A Universal Approach for Causal Mediation
Analysis
uotm Uncertainty of Time Series Model Selection
Methods
updateme Informative Messages About Outdated Packages
updater Utilities for Updating R
updog Flexible Genotyping for Polyploids
upndown Utilities and Design Aids for Up-and-Down
Dose-Finding Studies
upset.hp Generate UpSet Plots of VP and HP Based on the
ASV Concept
upsetjs 'HTMLWidget' Wrapper of 'UpSet.js' for
Exploring Large Set Intersections
upstartr Utilities Powering the Globe and Mail's Data
Journalism Template
uptasticsearch Get Data Frame Representations of
'Elasticsearch' Results
uptimeRobot Access the UptimeRobot Ping API
ura Monitoring Rater Reliability
urbin Unifying Estimation Results with Binary
Dependent Variables
urca Unit Root and Cointegration Tests for Time
Series Data
urlchecker Run CRAN URL Checks from Older R Versions
urlexplorer Structural Analysis and Pattern Discovery in
URL Datasets
urlparse Fast Simple URL Parser
urlshorteneR R Wrapper for the 'Bit.ly' and 'Is.gd'/'v.gd'
URL Shortening Services
urltools Vectorised Tools for URL Handling and Parsing
uroot Unit Root Tests for Seasonal Time Series
ursa Non-Interactive Spatial Tools for Raster
Processing and Visualization
us.census.geoheader US 2010 Census SF2 Geographic Header Summary
Levels 010-050
usa Updated US State Facts and Figures
uscoauditlog United States Copyright Office Product
Management Division SR Audit Data Dataset
Cleaning Algorithms
uscongress Fetch United States Congressional Records
(1995-Present)
usdampr Request USDA MPR Historical Data via the 'LMR'
API
usdarnass USDA NASS Quick Stats API
usdata Data on the States and Counties of the United
States
usdatasets A Comprehensive Collection of U.S. Datasets
usdm Uncertainty Analysis for Species Distribution
Models
usdoj For Accessing U.S. Department of Justice (DOJ)
Open Data
usedist Distance Matrix Utilities
usedthese Summarises Package & Function Usage
useful A Collection of Handy, Useful Functions
usefun A Collection of Useful Functions by John
usemodels Boilerplate Code for 'Tidymodels' Analyses
usethis Automate Package and Project Setup
usincometaxes Calculate Federal and State Income Taxes in the
United States
uskewFactors Model-Based Clustering via Mixtures of
Unrestricted Skew-t Sactor Analyzer Models
usl Analyze System Scalability with the Universal
Scalability Law
usmap US Maps Including Alaska and Hawaii
usmapdata Mapping Data for 'usmap' Package
usportsR Access U SPORTS Data
ussherR Ussher Data Set Drawn from 1658 Chronology
ustfd API Client for US Treasury Fiscal Data
ustyc Fetch US Treasury yield curve data.
utc Coordinated Universal Time Transformations
uteals Shared Utilities to Extend the 'teal' Modules
utest Lind/Mehlum Utest
utf8 Unicode Text Processing
utf8ify Format Text Using Unicode
utile.tables Build Tables for Publication
utile.tools Summarize Data for Publication
utile.visuals Create Visuals for Publication
utility Construct, Evaluate and Plot Value and Utility
Functions
utilityFunctionTools P-Spline Regression for Utility Functions and
Derived Measures
utilsIPEA IPEA Common Functions
utsf Univariate Time Series Forecasting
uuid Tools for Generating and Handling of UUIDs
uuidx Modern UUIDs for R with a Rust Backend
uwedragon Data Research, Access, Governance Network :
Statistical Disclosure Control
uwot The Uniform Manifold Approximation and
Projection (UMAP) Method for Dimensionality
Reduction
uxr User Experience Research
vDiveR Visualization of Viral Protein Sequence
Diversity Dynamics
vMF Sampling from the von Mises-Fisher Distribution
vaRiskScore VA CVD Risk Score
vacalibration Calibration of Computer-Coded Verbal Autopsy
Algorithm
vaccinationimpact Impact Study of Vaccination Campaigns
vaccine Statistical Tools for Immune Correlates
Analysis of Vaccine Clinical Trial Data
vaccineff Estimate Vaccine Effectiveness Based on
Different Study Designs
vachette A Method for Visualization of Pharmacometric
Models
vacuum Tukey's Vacuum Cleaner
vaersNDvax Non-Domestic Vaccine Adverse Event Reporting
System (VAERS) Vaccine Data for Present
vaersvax US Vaccine Adverse Event Reporting System
(VAERS) Vaccine Data for Present
vagalumeR Access to the 'Vagalume' API
valaddin Functional Input Validation
vald.extractor Robust Pipeline for 'VALD' 'ForceDecks' Data
Extraction and Analysis
valdr Access and Analyse 'VALD' Data via Our External
'APIs'
valdrViz Visualise and Report 'VALD ForceDecks' Test
Results
valentine Spread the Love for R Packages with Poetry
valet Provide R Client to the Bank of Canada's Valet
API
valh Interface Between R and the OpenStreetMap-Based
Routing Service 'Valhalla'
valhallr A Tidy Interface to the 'Valhalla' Routing
Engine
validata Validate Data Frames
validate Data Validation Infrastructure
validateIt Validating Topic Coherence and Topic Labels
validatesuggest Generate Suggestions for Validation Rules
validatetools Checking and Simplifying Validation Rule Sets
validmind Interface to the 'ValidMind' Platform
valmetrics Metrics and Plots for Model Evaluation
valorate Velocity and Accuracy of the LOg-RAnk TEst
valottery Results from the Virginia Lottery Draw Games
valr Genome Interval Arithmetic
valueEQ5D Scoring EQ-5d Descriptive System
valuemap Making Choropleth Map
valueprhr Value-Price Analysis with Bayesian and Panel
Data Methods
valytics Statistical Methods for Analytical Method
Comparison and Validation
vamc A Monte Carlo Valuation Framework for Variable
Annuities
vandalico Evaluation of Presence-Absence Models
vangogh Vincent van Gogh Colour Palette Generator
vannstats Simplified Statistical Procedures for Social
Sciences
vapour Access to the 'Geospatial Data Abstraction
Library' ('GDAL')
varEst Variance Estimation
varGuid Variance-Guided Regression for Heteroscedastic
Linear Models
varGuidTS Variance-Guided Time-Series Modeling for
Temporal Risk Detection
varImp RF Variable Importance for Arbitrary Measures
varPro Model-Independent Variable Selection via the
Rule-Based Variable Priority
varSel Sequential Forward Floating Selection using
Jeffries-Matusita Distance
varSelRF Variable Selection using Random Forests
varTestnlme Variance Components Testing for Linear and
Nonlinear Mixed Effects Models
varband Variable Banding of Large Precision Matrices
varbin Optimal Binning of Continuous and Categorical
Variables
varbvs Large-Scale Bayesian Variable Selection Using
Variational Methods
varclust Variables Clustering
vardiag Variogram Diagnostics
vardpoor Variance Estimation for Sample Surveys by the
Ultimate Cluster Method
varhandle Functions for Robust Variable Handling
variability Genetic Variability Analysis for Plant Breeding
Research
variables Variable Descriptions
variancePartition Quantify and interpret drivers of variation in
multilevel gene expression experiments
variantspark A 'Sparklyr' Extension for 'VariantSpark'
variationalDCM Variational Bayesian Estimation for Diagnostic
Classification Models
varitas Variant Calling in Targeted Analysis Sequencing
Data
varoc Value Added Receiver Operating Characteristics
Curve
vars VAR Modelling
vartest Tests for Variance Homogeneity
varycoef Modeling Spatially Varying Coefficients
vasicek Miscellaneous Functions for Vasicek
Distribution
vasicekfit Extended Vasicek Credit Loss Model with
Macroeconomic Factors
vasicekreg Regression Modeling Using Vasicek Distribution
vaster Tools for Raster Grid Logic
vatcheckapi Client for the 'vatcheckapi.com' VAT Validation
API
vaultr Vault Client for Secrets and Sensitive Data
vaxineR Vaccine Coverage and Outbreak Risk Analysis
vaxpmx Vaccines Pharmacometrics
vayr Extensions for 'ggplot2' to Visualize as You
Randomize
vazul Analysis Blinding Tools
vbracket Custom Legends with Statistical Comparison
Brackets
vcPB Longitudinal PB Varying-Coefficient Groupwise
Disparity Model
vccp Vine Copula Change Point Detection in
Multivariate Time Series
vcd Visualizing Categorical Data
vcd2df Value Change Dump to Data Frame
vcdExtra 'vcd' Extensions and Additions
vcfR Manipulate and Visualize VCF Data
vcfheader Fast Genetic Variant Call Format File Header
Intelligence and Audit
vcfppR Rapid Manipulation of the Variant Call Format
(VCF)
vchartr Interactive Charts with the 'JavaScript'
'VChart' Library
vcmeta Varying Coefficient Meta-Analysis
vcov Variance-Covariance Matrices and Standard
Errors
vcpen Penalized Variance Components Analysis
vcr Record 'HTTP' Calls to Disk
vcrpart Tree-Based Varying Coefficient Regression for
Generalized Linear and Ordinal Mixed Models
vctrs Vector Helpers
vctsfr Visualizing Collections of Time Series
Forecasts
vcvComp Comparison of Variance - Covariance Patterns
vdar Discriminant Analysis Incorporating Individual
Uncertainties
vdiffr Visual Regression Testing and Graphical Diffing
vec2dtransf 2D Cartesian Coordinate Transformation
vecmatch Generalized Propensity Score Estimation and
Matching for Multiple Groups
vecsets Like Set Tools in 'Base' Package but Keeps
Duplicate Elements
vectorbitops Vector Bitwise Operations
vectorialcalculus Vector Calculus Tools for Visualization and
Analysis
vectorsurvR Data Access and Analytical Tools for
'VectorSurv' Users
vectorwavelet Vector Wavelet Coherence for Multiple Time
Series
vectra Columnar Query Engine for Larger-than-RAM Data
vecvec Construct Mixed Type Data Structures with
Vectors of Vectors
veesa Pipeline for Explainable Machine Learning with
Functional Data
vegIndexCalc Vegetation Indices (VIs) Calculation for Remote
Sensing Analysis
vegalite Tools to Encode Visualizations with the
'Grammar of Graphics'-Like 'Vega-Lite' 'Spec'
vegan Community Ecology Package
vegan3d Static and Dynamic 3D and Editable Interactive
Plots for the 'vegan' Package
vegawidget 'Htmlwidget' for 'Vega' and 'Vega-Lite'
vegclust Fuzzy Clustering of Vegetation Data
vegetablesSriLanka Daily Vegetable Prices of Sri Lanka
vegperiod Determine Thermal Vegetation Periods
vein Vehicular Emissions Inventories
vek Predicate Helper Functions for Testing Simple
Atomic Vectors
velociraptr Fossil Analysis
vembedr Embed Video in HTML
venn Draw Venn Diagrams
vennDiagramLab Headless Venn Diagram Analysis and Rendering
venneuler Venn and Euler Diagrams
vennplot Venn Diagrams in 2D and 3D
venny Venn Diagram
verbaliseR Make your Text Mighty Fine
verbalisr Describe Pedigree Relationships in Words
verdadecu Data from the Ecuador Truth Commission
verdata Analyze Data from the Truth Commission in
Colombia
verhoeff Implementation of the 'Verhoeff' Check Digit
Algorithm
verification Weather Forecast Verification
verifyr2 Compare and Verify File Contents
vermeulen Biomarker Data Set by Vermeulen et al. (2009)
versioning Settings and File I/O using a Configuration
YAML File
versions Query and Install Specific Versions of Packages
on CRAN
versionsort Sort and Order Version Codes
versus Compare Data Frames
vetiver Version, Share, Deploy, and Monitor Models
vetr Trust, but Verify
vfinputs Visual Filter Inputs for Shiny
vfprogression Visual Field (VF) Progression Analysis and
Plotting Methods
vfunc Manipulate Virtual Functions
vglmer Variational Inference for Hierarchical
Generalized Linear Models
vhcub Virus-Host Codon Usage Co-Adaptation Analysis
vhica Vertical and Horizontal Inheritance Consistence
Analysis
via Virtual Arrays
viafoundry R Client for 'Via Foundry' API
vibass Materials for Introductory Course on Bayesian
Learning
vici Vaccine Induced Cellular Immunogenicity with
Bivariate Modeling
video 'Shiny' Extension of 'video.js'
videogameinsightsR Interface to 'Video Game Insights' API for
Gaming Market Analytics
vietnamcode Convert Vietnam Provincial Codes
vietnameseConverter Convert Vietnamese Encodings
viewpoly A Shiny App to Visualize Genetic Maps and QTL
Analysis in Polyploid Species
viewscape Viewscape Analysis
vigicaen 'VigiBase' Pharmacovigilance Database Toolbox
viking State-Space Models Inference by Kalman or
Viking
villager A Framework for Designing and Running Agent
Based Models
vimixr Collapsed Variational Inference for Dirichlet
Process (DP) Mixture Model
vimp Perform Inference on Algorithm-Agnostic
Variable Importance
vimpclust Variable Importance in Clustering
vindecodr Provides an Interface to the Department of
Transportation VIN Decoder
vinereg D-Vine Quantile Regression
violinplotter Plotting and Comparing Means with Violin Plots
vioplot Violin Plot
vip Variable Importance Plots
vipor Plot Categorical Data Using Quasirandom Noise
and Density Estimates
viralx Explainers for Regression Models in HIV
Research
viridis Colorblind-Friendly Color Maps for R
viridisLite Colorblind-Friendly Color Maps (Lite Version)
virtualPollen Simulating Pollen Curves from Virtual Taxa with
Different Life and Niche Traits
virtualspecies Generation of Virtual Species Distributions
virtuoso Interface to 'Virtuoso' using 'ODBC'
virustotal R Client for the 'VirusTotal' API
visNetwork Network Visualization using 'vis.js' Library
visOmopResults Graphs and Tables for OMOP Results
visPedigree Tidying, Analysis, and Fast Visualization of
Animal and Plant Pedigrees
visStatistics Automated Selection and Visualisation of
Statistical Hypothesis Tests
visTree Visualization of Subgroups for Decision Trees
visa Vegetation Imaging Spectroscopy Analyzer
visachartR Wrapper for 'Visa Chart Components'
visae Visualization of Adverse Events
viscomp Visualize Multi-Component Interventions in
Network Meta-Analysis
viscomplexr Phase Portraits of Functions in the Complex
Number Plane
visdat Preliminary Visualisation of Data
vismeteor Analysis of Visual Meteor Data
vismi Visual Diagnostics for Multiple Imputation
visor Geospatial Tools for Visibility Analysis
visreg Visualization of Regression Models
vistime Pretty Timelines in R
vistla Detecting Influence Paths with Information
Theory
vistributions Visualize Probability Distributions
visualFields Statistical Methods for Visual Fields
visualize Graph Probability Distributions with User
Supplied Parameters and Statistics
visualpred Visualization 2D of Binary Classification
Models
visvaR Shiny-Based Statistical Solutions for
Agricultural Research
visvow Visible Vowels: Visualization of Vowel
Variation
visxhclust A Shiny App for Visual Exploration of
Hierarchical Clustering
vita Variable Importance Testing Approaches
vitae Curriculum Vitae for R Markdown
vital Tidy Analysis Tools for Mortality, Fertility,
Migration and Population Data
vitality Fitting Routines for the Vitality Family of
Mortality Models
vitals Large Language Model Evaluation
vitopack Actuarial Helpers for Triangles, Exposures and
Czech Birth Numbers
vivaglint Analysis Tools for 'Viva Glint' Survey Data
vivainsights Analyze and Visualize Data from 'Microsoft Viva
Insights'
vivaldi Viral Variant Location and Diversity
vivid Variable Importance and Variable Interaction
Displays
vivo Variable Importance via Oscillations
vizClust Visualization and Exploration of Cluster
Transitions
vizdraws Visualize Draws from the Prior and Posterior
Distributions
vkR Access to VK API via R
vmTools Version Management Tools on the File System
vmdTDNN VMD Based Time Delay Neural Network Model
vmeasur Quantify the Contractile Nature of Vessels
Monitored under an Operating Microscope
vmr Virtual Machines for R
vmsae Variational Multivariate Spatial Small Area
Estimation
vntrs Variable Neighborhood Trust Region Search
vocaldia Create and Manipulate Vocalisation Diagrams
voi Expected Value of Information
voice Speaker Recognition, Voice Analysis and Mood
Inference via Music Theory
voigt The Voigt Distribution
vol2birdR Vertical Profiles of Biological Signals in
Weather Radar Data
volatilityTrader High Volatility Environment Option Trading
Strategies Graphs
volcano3D 3D Volcano Plots and Polar Plots for
Three-Class Data
volcanoPlot Volcano Plot for Clinical Trial Adverse Events
volesti Volume Approximation and Sampling of Convex
Polytopes
volker High-Level Functions for Tabulating, Charting
and Reporting Survey Data
volrisk Simulation of Life Reinsurance with Profit
Commission
voluModel Modeling Species Distributions in Three
Dimensions
voronoiTreemap Voronoi Treemaps with Added Interactivity by
Shiny
voronoifortune Voronoi Tessellation by Fortune Algorithm
voson.tcn Twitter Conversation Networks and Analysis
vosonSML Collecting Social Media Data and Generating
Networks for Analysis
vote Election Vote Counting
voteogram United States House and Senate Voting Cartogram
Generators
votesmart Wrapper for the Project 'VoteSmart' API
votesys Voting Systems, Instant-Runoff Voting, Borda
Method, Various Condorcet Methods
vottrans Voter Transition Analysis
voucher 'Trustdown' Interface for R
vov CSS Animations for 'shiny' Elements
vowels Vowel Manipulation, Normalization, and Plotting
vpc Create Visual Predictive Checks
vprint More Flexible Form of Boolean Verbose
vrnmf Volume-Regularized Structured Matrix
Factorization
vroom Read and Write Rectangular Text Data Quickly
vrtest Variance Ratio Tests and Other Tests for
Martingale Difference Hypothesis
vscc Variable Selection for Clustering and
Classification
vse4ts Identify Memory Patterns in Time Series Using
Variance Scale Exponent
vsgoftest Goodness-of-Fit Tests Based on Kullback-Leibler
Divergence
vsmi Variable Selection for Multiple Imputed Data
vsn Variance stabilization and calibration for
microarray data
vsp Vintage Sparse PCA for Semi-Parametric Factor
Analysis
vstdct Nonparametric Estimation of Toeplitz Covariance
Matrices
vstsr Access to 'Azure DevOps' API via R
vtable Variable Table for Variable Documentation
vtreat A Statistically Sound 'data.frame'
Processor/Conditioner
vtree Display Information About Nested Subsets of a
Data Frame
vtype Estimates the Variable Type in Error Afflicted
Data
vudc Visualization of Univariate Data for Comparison
vueR 'Vuejs' Helpers and 'Htmlwidget'
vvauditor Creates Assertion Tests
vvbitwarden Interacts with 'Bitwarden Secrets Manager'
vvcanvas 'Canvas' LMS API Integration
vvconverter Apply Transformations to Data
vvdoctor Statistical Test App with R 'shiny'
vvfiller Fill Data Points
vvmover Read and Write Data
vvsculptor Apply Manipulations to Data Frames
vvtableau R Interface for 'Tableau' Services
vvtermtime Interface for 'Semestry TermTime' Services
vwline Draw Variable-Width Lines
vws Vertical Weighted Strips
wARMASVp Winsorized ARMA Estimation for Higher-Order
Stochastic Volatility Models
wCorr Weighted Correlations
wINEQ Inequality Measures for Weighted Data
wISAM Weighted Inbred Strain Association Mapping
wNNSel Weighted Nearest Neighbor Imputation of Missing
Values using Selected Variables
wTO Computing Weighted Topological Overlaps (wTO) &
Consensus wTO Network
wacolors Colorblind-Friendly Palettes from Washington
State
wactor Word Factor Vectors
waetr 'WebAIM' 'WAVE' Accessibility Evaluation Tool
waiter Loading Screen for 'Shiny'
wakefield Generate Random Data Sets
wal Read and Write 'wal' Bitmap Image Files and
Other 'Quake' Assets
waldo Find Differences Between R Objects
walkboutr Generate Walk Bouts from GPS and Accelerometry
Data
walkscore A Tidy Interface to the 'Walk Score' API
walkscoreAPI Walk Score and Transit Score API
wallace A Modular Platform for Reproducible Modeling of
Species Niches and Distributions
wally The Wally Calibration Plot for Risk Prediction
Models
walmartAPI Walmart Open API Wrapper
walrus Robust Statistical Methods
wand Retrieve 'Magic' Attributes from Files and
Directories
waou Weighting All of Us
warabandi Roster Generation of Turn for
Weekdays:'warabandi'
warbleR Streamline Bioacoustic Analysis
warehouseTools Heuristics for Solving the Traveling Salesman
Problem in Warehouse Layouts
warmthcompetence Warmth and Competence Detectors
warp Group Dates
washdata Urban Water and Sanitation Survey Dataset
washeR Time Series Outlier Detection
washi Washington Soil Health Initiative Branding
washr Publication Toolkit for Water, Sanitation and
Hygiene (WASH) Data
waspasR Tool Kit to Implement a W.A.S.P.A.S. Based
Multi-Criteria Decision Analysis Solution
waspr Wasserstein Barycenters of Subset Posteriors
watcher Watch the File System for Changes
waterYearType Sacramento and San Joaquin Valley Water Year
Types
waterfalls Create Waterfall Charts using 'ggplot2' Simply
watson Fitting and Simulating Mixtures of Watson
Distributions
wav Read and Write WAV Files
wavScalogram Wavelet Scalogram Tools for Time Series
Analysis
waveband Computes Credible Intervals for Bayesian
Wavelet Shrinkage
waved Wavelet Deconvolution
wavelets Functions for Computing Wavelet Filters,
Wavelet Transforms and Multiresolution Analyses
wavemulcor Wavelet Routines for Global and Local Multiple
Regression and Correlation
waver Calculate Fetch and Wave Energy
waves Vis-NIR Spectral Analysis Wrapper
waveslim Basic Wavelet Routines for One-, Two-, and
Three-Dimensional Signal Processing
wavethresh Wavelets Statistics and Transforms
waydown Computation of Approximate Potentials for
Weakly Non-Gradient Fields
waysign Multi-Purpose and High-Performance Routing
waywiser Ergonomic Methods for Assessing Spatial Models
wbCorr Bivariate Within- and Between-Cluster
Correlations
wbacon Weighted BACON Algorithms
wbids Seamless Access to World Bank International
Debt Statistics (IDS)
wbs Wild Binary Segmentation for Multiple
Change-Point Detection
wbsd Wild Bootstrap Size Diagnostics
wbstats Programmatic Access to Data and Statistics from
the World Bank API
wbsts Multiple Change-Point Detection for
Nonstationary Time Series
wbwdi Seamless Access to World Bank World Development
Indicators (WDI)
wcc Windowed Cross Correlation
wcde Download Data from the Wittgenstein Centre
Human Capital Data Explorer
wcep Survival Analysis for Weighted Composite
Endpoints
wconf Weighted Confusion Matrix
wcox Weights to Correct for Outcome Dependent
Sampling in Time to Event Data
wcvpmatch Taxonomic Name Reconciliation Against the
'WCVP' Backbone
wdiEF Calculation of the Water Deficit Index (WDI)
and the Evaporative Fraction (EF) on Rasters
wdiexplorer Explore World Development Indicators Data
wdm Weighted Dependence Measures
wdman 'Webdriver'/'Selenium' Binary Manager
wdnet Weighted and Directed Networks
wdnr.gis Pull Spatial Layers from 'WDNR ArcGIS REST API'
wdpar Interface to the World Database on Protected
Areas
wdsmatch Weighted Double Score Matching for
Survey-Weighted Causal Inference
weaana Analysis the Weather Data
weakARMA Tools for the Analysis of Weak ARMA Models
weathR Interact with the U.S. National Weather Service
API
weatherOz An API Client for Australian Weather and
Climate Data Resources
weatherStats Airport Weather Station Statistics
weatherindices Calculate Weather Indices
weatherjoin Join Gridded Weather Data to Event Tables
weathermetrics Functions to Convert Between Weather Metrics
webSDM Including Known Interactions in Species
Distribution Models
webchem Chemical Information from the Web
webdav A Simple Interface for Interacting with
'WebDAV' Servers
webdeveloper Functions for Web Development
webdriver 'WebDriver' Client for 'PhantomJS'
webexercises Create Interactive Web Exercises in 'R
Markdown' (Formerly 'webex')
webfakes Fake Web Apps for HTTP Testing
webglobe 3D Interactive Globes
webmap Create Interactive Web Maps Using 'The National
Map' Services
webmockr Stubbing and Setting Expectations on 'HTTP'
Requests
webp A New Format for Lossless and Lossy Image
Compression
webr Data and Functions for Web-Based Analysis
webreadr Tools for Reading Formatted Access Log Files
websearchr Access Domains and Search Popular Websites
webshot Take Screenshots of Web Pages
webshot2 Take Screenshots of Web Pages
websocket 'WebSocket' Client Library
webtrackR Preprocessing and Analyzing Web Tracking Data
webuse Import Stata 'webuse' Datasets
webutils Utility Functions for Developing Web
Applications
wec Weighted Effect Coding
weed Wrangler for Emergency Events Database
wefnexus Water-Energy-Food-Nutrient-Carbon Nexus
Analysis for Agronomic Systems
wehoop Access Women's Basketball Play by Play Data
weibullness Goodness-of-Fit Test for Weibull Distribution
(Weibullness)
weibulltools Statistical Methods for Life Data Analysis
weightQuant Weights for Incomplete Longitudinal Data and
Quantile Regression
weightedCL Efficient and Feasible Inference for
High-Dimensional Normal Copula Regression
Models
weightedGCM Weighted Generalised Covariance Measure
Conditional Independence Test
weightedRank Sensitivity Analysis Using Weighted Rank
Statistics
weightedScores Weighted Scores Method for Regression Models
with Dependent Data
weightedVoronoi Weighted Spatial Tessellations in Constrained
Polygon Domains
weightederm Weighted Empirical Risk Minimization for
Changepoint Regression
weightedsurv Survival Analysis with Subject-Specific (Case
Weights) and Time-Dependent Weighting
weightr Estimating Weight-Function Models for
Publication Bias
weights Weighting and Weighted Statistics
weird Functions and Data Sets for "That's Weird:
Anomaly Detection Using R" by Rob J Hyndman
weirs A Hydraulics Package to Compute Open-Channel
Flow over Weirs
welo Weighted and Standard Elo Rates
wesanderson A Wes Anderson Palette Generator
wevid Weight of Evidence for Quantifying Performance
of a Binary Classifier
wex Exact Observation Weights for the Kalman Filter
and Smoother
weyl The Weyl Algebra
wf Artificial Intelligence Workflow Tools
wfe Weighted Linear Fixed Effects Regression Models
for Causal Inference
wfg Weighted Fast Greedy Algorithm
wfindr Crossword, Scrabble and Anagram Solver
wflo Data Set and Helper Functions for Wind Farm
Layout Optimization Problems
wgaim Whole Genome Average Interval Mapping for QTL
Detection and Estimation using ASReml-R
wget Setting Download Method to 'wget'
whalestrike Simulate Whale Ship Strikes
whapi R Client for 'whapi.cloud'
whatifbandit Analyzing Randomized Experiments as Multi-Arm
Bandits
whatthreewords Work with the 'what3words' API for Easy
Location Referencing
wheatmap Incrementally Build Complex Plots using Natural
Semantics
when Definition of Date and Time Dimension Tables
whep Processing Agro-Environmental Data
where Vectorised Substitution and Evaluation
whereami Reliably Return the Source and Call Location of
a Command
whereport Geolocalization of IATA Codes
whippr Tools for Manipulating Gas Exchange Data
whirl Log Execution of Scripts
whisker {{mustache}} for R, Logicless Templating
whisper Native R 'torch' Implementation of 'OpenAI'
'Whisper'
whitebox 'WhiteboxTools' R Frontend
whitening Whitening and High-Dimensional Canonical
Correlation Analysis
whitestrap White Test and Bootstrapped White Test for
Heteroskedasticity
whitewater Parallel Processing Options for Package
'dataRetrieval'
whoa Evaluation of Genotyping Error in
Genotype-by-Sequencing Data
whoami Username, Full Name, Email Address, 'GitHub'
Username of the Current User
whomds Calculate Results from WHO Model Disability
Survey Data
wid Download Data from the World Inequality
Database
widals Weighting by Inverse Distance with Adaptive
Least Squares
wideRhino High-Dimensional Methods via Generalised
Singular Decomposition
widgetTools Creates an interactive tcltk widget
widgetframe 'Htmlwidgets' in Responsive 'iframes'
widr Interface to the World Inequality Database
(WID)
widyr Widen, Process, then Re-Tidy Data
wig Import WIG Data into R in Long Format
wikiTools Tools for Wikidata and Wikipedia
wikibooks Functions and Datasets of the German WikiBook
"GNU R"
wikifacts Get Facts and Data from Wikipedia and Wikidata
wikilake Scrape Lake Metadata Tables from Wikipedia
wikiprofiler 'WikiPathway' Based Data Integration and
Visualization
wikitaxa Taxonomic Information from 'Wikipedia'
wikkitidy Tidy Analysis of Wikipedia
wilcoxmed Computes Values for the 1-Sample Wilcoxon Sign
Rank Test for Medians
wildcard Templates for Data Frames
wildlifeDI Calculate Indices of Dynamic Interaction for
Wildlife Tracking Data
wildmeta Cluster Wild Bootstrapping for Meta-Analysis
wildpoker Best Hand Analysis for Poker Variants Including
Wildcards
wilson Web-Based Interactive Omics Visualization
winch Portable Native and Joint Stack Traces
windAC Area Correction Methods
windex Analysing Convergent Evolution using the
Wheatsheaf Index
windows.pls Segmentation Approaches in Chemometrics
windsoraiR Access the 'Windsor.ai' API
winfapReader Interact with Peak Flow Data in the United
Kingdom
wingen Continuous Mapping of Genetic Diversity
winputall Variable Input Allocation Among Crops
winr Randomization-Based Covariance Adjustment of
Win Statistics
wintime Win Time Methods for Time-to-Event Data in
Clinical Trials
wired Weighted Adaptive Prediction with Structured
Dependence
wishmom Compute Moments Related to Beta-Wishart and
Inverse Beta-Wishart Distributions
withdots Put ... in a Function's Argument List
wither Temporarily Change Project Root
withr Run Code 'With' Temporarily Modified Global
State
wizaRdry A Magical Framework for Collaborative &
Reproducible Data Analysis
wjake Personal Themes and Formatting Preferences
wk Lightweight Well-Known Geometry Parsing
wkb Convert Between Spatial Objects and Well-Known
Binary Geometry
wkpool Vertex Pool Topology for Well-Known Geometry
wktmo Converting Weekly Data to Monthly Data
wlsd Wrangling Longitudinal Survival Data
wmm World Magnetic Model
wmwAUC Wilcoxon-Mann-Whitney Test of No Group
Discrimination
wmwm Performs Wilcoxon-Mann-Whitney Test with
Missing Data
wmwpow Precise and Accurate Power of the
Wilcoxon-Mann-Whitney Rank-Sum Test for a
Continuous Variable
wnl Minimization Tool for
Pharmacokinetic-Pharmacodynamic Data Analysis
wnominate Roll Call Analysis Software
wodds Calculates Whisker Odds
woe Computes Weight of Evidence and Information
Values
woeBinning Supervised Weight of Evidence Binning of
Numeric Variables and Factors
womblR Spatiotemporal Boundary Detection Model for
Areal Unit Data
woodValuationDE Wood Valuation Germany
wooldridge 115 Data Sets from "Introductory Econometrics:
A Modern Approach, 7e" by Jeffrey M. Wooldridge
worcs Workflow for Open Reproducible Code in Science
word2vec Distributed Representations of Words
wordPuzzleR Word Puzzle Game
wordcloud Word Clouds
wordcloud2 Create Word Cloud by 'htmlwidget'
wordler The 'WORDLE' Game
wordmap Feature Extraction and Document Classification
with Noisy Labels
wordnet WordNet Interface
wordpiece R Implementation of Wordpiece Tokenization
wordpiece.data Data for Wordpiece-Style Tokenization
words List of English Words from the Scrabble
Dictionary
wordsalad Provide Tools to Extract and Analyze Word
Vectors
wordspace Distributional Semantic Models in R
wordvector Word and Document Vector Models
workflowr A Framework for Reproducible and Collaborative
Data Science
workflows Modeling Workflows
workflowsets Create a Collection of 'tidymodels' Workflows
workloopR Analysis of Work Loops and Other Data from
Muscle Physiology Experiments
workspace Manage Collections of Datasets and Objects
worldbank Client for the 'World Bank' APIs
worldfootballR Extract and Clean World Football (Soccer) Data
worldmet Import Surface Meteorological Data from NOAA
worrms World Register of Marine Species (WoRMS) Client
worrrd Generate Wordsearch and Crossword Puzzles
wosr Clients to the 'Web of Science' and 'InCites'
APIs
woylier Alternative Tour Frame Interpolation Method
wpa Tools for Analysing and Visualising Viva
Insights Data
wpeR Streamlined Analysis of Wild Pedigree Data
wpp2008 World Population Prospects 2008
wpp2010 World Population Prospects 2010
wpp2012 World Population Prospects 2012
wpp2015 World Population Prospects 2015
wpp2017 World Population Prospects 2017
wpp2019 World Population Prospects 2019
wppExplorer Explorer of World Population Prospects
wqc Wavelet Quantile Correlation Analysis
wql Exploring Water Quality Monitoring Data
wqrr Wavelet Quantile Regression Toolbox
wqspt Permutation Test for Weighted Quantile Sum
Regression
wqtrends Assess Water Quality Trends with Generalized
Additive Models
wrGraph Graphics in the Context of Analyzing
High-Throughput Data
wrMisc Analyze Experimental High-Throughput (Omics)
Data
wrProteo Proteomics Data Analysis Functions
wrTopDownFrag Internal Fragment Identification from Top-Down
Mass Spectrometry
wrangle A Systematic Data Wrangling Idiom
wrappedtools Useful Wrappers Around Commonly Used Functions
wrappr A Collection of Helper and Wrapper Functions
wrapr Wrap R Tools for Debugging and Parametric
Programming
wrassp Interface to the 'ASSP' Library
wrds Access 'Wharton Research Data Services'
('WRDS')
wrictools Analyze Whole Room Indirect Calorimetry (WRIC)
Data
writeAlizer Generate Predicted Writing Quality Scores
writer Write from Multiple Sources to a Database Table
writexl Export Data Frames to Excel 'xlsx' Format
wrswoR Weighted Random Sampling without Replacement
wru Who are You? Bayesian Prediction of Racial
Category Using Surname, First Name, Middle
Name, and Geolocation
wsMed Within-Subject Mediation Analysis Using
Structural Equation Modeling
wsbackfit Weighted Smooth Backfitting for Structured
Models
wsjplot Style Time Series Plots Like the Wall Street
Journal
wskm Weighted k-Means Clustering
wsprv Weighted Selection Probability for Rare Variant
Analysis
wsrf Weighted Subspace Random Forest for
Classification
wstats Weighted Descriptive Statistics
wstdiff Welch-Satterthwaite Approximation for
t-Distribution Differences
wsyn Wavelet Approaches to Studies of Synchrony in
Ecology and Other Fields
wtest The W-Test for Genetic Interactions Testing
wv Wavelet Variance
wwntests Hypothesis Tests for Functional Time Series
wxgenR A Stochastic Weather Generator with Seasonality
wyz.code.metaTesting Wizardry Code Meta Testing
wyz.code.offensiveProgramming
Wizardry Code Offensive Programming
wyz.code.rdoc Wizardry Code Offensive Programming R
Documentation
wyz.code.testthat Wizardry Code Offensive Programming Test
Generation
x12 Interface to 'X12-ARIMA'/'X13-ARIMA-SEATS' and
Structure for Batch Processing of Seasonal
Adjustment
x13binary Provide the 'x13ashtml' Seasonal Adjustment
Binary
x3ptools Tools for Working with 3D Surface Measurements
xLLiM High Dimensional Locally-Linear Mapping
xRing Identify and Measure Tree Rings on X-Ray
Micro-Density Profiles
xSub Cross-National Data on Sub-National Violence
xVA Credit Risk Valuation Adjustments
xactonomial Inference for Functions of Multinomial
Parameters
xadmix Subsetting and Plotting Optimized for Admixture
Data
xaringan Presentation Ninja
xaringanExtra Extras and Extensions for 'xaringan' Slides
xaringanthemer Custom 'xaringan' CSS Themes
xcms LC-MS and GC-MS Data Analysis
xdcclarge Estimating a (c)DCC-GARCH Model in Large
Dimensions
xdvir Render 'LaTeX' in Plots
xefun X-Engineering or Supporting Functions
xega Extended Evolutionary and Genetic Algorithms
xegaBNF Compile a Backus-Naur Form Specification into
an R Grammar Object
xegaDerivationTrees Generating and Manipulating Derivation Trees
xegaDfGene Gene Operations for Real-Coded Genes
xegaGaGene Binary Gene Operations for Genetic Algorithms
xegaGeGene Grammatical Evolution
xegaGpGene Genetic Operations for Grammar-Based Genetic
Programming
xegaPermGene Operations on Permutation Genes
xegaPopulation Genetic Population Level Functions
xegaSelectGene Selection of Genes and Gene Representation
Independent Functions
xergm.common Common Infrastructure for Extensions of
Exponential Random Graph Models
xesreadR Read and Write XES Files
xfun Supporting Functions for Packages Maintained by
'Yihui Xie'
xgb2sql Convert Trained 'XGBoost' Model to SQL Query
xgboost Extreme Gradient Boosting
xgrove Explanation Groves
xgxr Exploratory Graphics for Pharmacometrics
xhaz Excess Hazard Modelling Considering
Inappropriate Mortality Rates
xiacf Nonlinear Dependence and Lead-Lag Analysis via
Chatterjee's Xi
xkcd Plotting 'ggplot2' Graphics in an 'XKCD' Style
xkcdcolors Color Names from the XKCD Color Survey
xlcharts Create Native 'Excel' Charts and Work with
Microsoft 'Excel' Files
xlcutter Parse Batches of 'xlsx' Files Based on a
Template
xlr Create Table Summaries and Export Neat Tables
to 'Excel'
xlsform2word Convert 'XLSForm' to Structured 'Word' Document
xlsx Read, Write, Format Excel 2007 and Excel
97/2000/XP/2003 Files
xlsx2dfs Read and Write 'Excel' Sheets into and from
List of Data Frames
xlsxjars Package Required POI Jars for the xlsx Package
xmap Transforming Data Between Statistical
Classifications
xmeta A Toolbox for Multivariate Meta-Analysis
xml2 Parse XML
xml2relational Converting XML Documents into Relational Data
Models
xmlconvert Comfortably Converting XML Documents to
Dataframes and Vice Versa
xmlparsedata Parse Data of 'R' Code as an 'XML' Tree
xmlr Read, Write and Work with 'XML' Data
xmlrpc2 Implementation of the Remote Procedure Call
Protocol ('XML-RPC')
xmlwriter Fast and Elegant XML Generation
xmpdf Edit 'XMP' Metadata and 'PDF' Bookmarks and
Documentation Info
xmrr Generate XMR Control Chart Data from
Time-Series Data
xnet Two-Step Kernel Ridge Regression for Network
Predictions
xoi Tools for Analyzing Crossover Interference
xopen Open System Files, 'URLs', Anything
xpect Probabilistic Time Series Forecasting with
XGBoost and Conformal Inference
xpectr Generates Expectations for 'testthat' Unit
Testing
xplain Providing Interactive Interpretations and
Explanations of Statistical Results
xplainfi Feature Importance Methods for Global
Explanations
xplorerr Tools for Interactive Data Exploration
xportr Utilities to Output CDISC SDTM/ADaM XPT Files
xpose Diagnostics for Pharmacometric Models
xpose.nlmixr2 Graphical Diagnostics for Pharmacometric
Models: Extension to 'nlmixr2'
xpose.xtras Extra Functionality for the 'xpose' Package
xpose4 Diagnostics for Nonlinear Mixed-Effect Models
xptr Manipulating External Pointers
xray X Ray Vision on your Datasets
xreg2 Flexible Maximum Likelihood Regression with
Gradient-Based Optimisation
xrf eXtreme RuleFit
xrnet Hierarchical Regularized Regression
xslt Extensible Style-Sheet Language Transformations
xtable Export Tables to LaTeX or HTML
xtbhst Bootstrap Slope Heterogeneity Test for Panel
Data
xtbreakcoint Panel Cointegration Tests with Structural
Breaks
xtcspqardl Cross-Sectionally Augmented Panel Quantile ARDL
xtdhcoint Durbin-Hausman Panel Cointegration Tests
xtdml Double Machine Learning for Static Panel Models
with Fixed Effects
xtfifevd Panel Fixed Effects Filtered and Variance
Decomposition Estimation
xtife Interactive Fixed Effects Estimator for
Balanced Panel Data
xtpqardl Panel Quantile Autoregressive Distributed Lag
Model
xtranat Network Metrics Based on Random Walks
xtrec Panel Unit Root Test Based on Recursive
Detrending
xts eXtensible Time Series
xtsum Summary Statistics for Panel Data
xtvfreg Variance Function Panel Regression
xutils Utility Functions of Fangzhou Xie
xvm Read, Parse and Visualize 'XVG'/'XPM' Files
from Molecular Dynamics
xwf Extrema-Weighted Feature Extraction
xxdi An R Package for Evaluating Expertise Indices
for Research Strength Assessment
xxhashlite Extremely Fast Hashing of R Objects, Raw Data
and Files using 'xxHash' Algorithms
yaConsensus Consensus Clustering of Omic Data
yaImpute Nearest Neighbor Observation Imputation and
Evaluation Tools
yaap A Toolkit for Archetypal Analysis Methods
yacca Yet Another Canonical Correlation Analysis
Package
yager Yet Another General Regression Neural Network
yahoofinancer Fetch Data from Yahoo Finance API
yaml Methods to Convert R Data to YAML and Back
yaml12 Fast 'YAML' 1.2 Parser and Formatter
yamlet Versatile Curation of Table Metadata
yamlme Writing 'YAML' Headers for 'R-Markdown'
Documents
yardstick Tidy Characterizations of Model Performance
yarrr A Companion to the e-Book "YaRrr!: The Pirate's
Guide to R"
yasp String Functions for Compact R Code
yatah Yet Another TAxonomy Handler
ycevo Nonparametric Estimation of the Yield Curve
Evolution
yesno Ask Yes-No Questions
yfR Downloads and Organizes Financial Data from
Yahoo Finance
yfhist Yahoo Finance 'history' API
yfinancer 'Yahoo Finance' API Wrapper
yfscreen Yahoo Finance 'screener' API
yhat Interpreting Regression Effects
yieldcurves Yield Curve Fitting, Analysis, and
Decomposition
yll Compute Expected Years of Life Lost (YLL) and
Average YLL
ymd Parse 'YMD' Format Number or String to Date
ymlthis Write 'YAML' for 'R Markdown', 'bookdown',
'blogdown', and More
ympes Collection of Helper Functions
yodel A General Bayesian Model Averaging Helper
yorkr Analyze Cricket Performances Based on Data from
Cricsheet
youngSwimmers Young Swimmers Dataset
ypr Yield Per Recruit
yrnd Extracts Risk Neutral Densities of Prices,
Money Market Rates and Government Bond Yields
from Interest Rates Futures Options Prices
yuima The YUIMA Project Package for SDEs
yuimaGUI A Graphical User Interface for the 'yuima'
Package
yulab.utils Supporting Functions for Packages Maintained by
'YuLab-SMU'
yum Utilities to Extract and Process 'YAML'
Fragments
yyjsonr Fast 'JSON', 'NDJSON' and 'GeoJSON' Parser and
Generator
z22 Official Gridded Data from the German Census
2022
zCompositions Treatment of Zeros, Left-Censored and Missing
Values in Compositional Data Sets
zFPKM A suite of functions to facilitate zFPKM
transformations
zTree Functions to Import Data from 'z-Tree' into R
zalpha Run a Suite of Selection Statistics
zarr Native and Extensible R Driver for 'Zarr'
zctaCrosswalk Crosswalk Between 2020 Census ZIP Code
Tabulation Areas (ZCTAs), States and Counties
zcurve An Implementation of Z-Curves
zdeskR Connect to Your 'Zendesk' Data
zeallot Multiple, Unpacking, and Destructuring
Assignment
zebu Local Association Measures
zeitgebr Analysis of Circadian Behaviours
zen4R Interface to 'Zenodo' REST API
zendeskR Zendesk API Wrapper
zendown Access Files from 'Zenodo' Deposits
zenplots Zigzag Expanded Navigation Plots
zenstats Statistics from 'Zenodo' Deposits
zephyr Structured Messages and Options
zeroEQpart Zero Order vs (Semi) Partial Correlation Test
and CI
zetadiv Functions to Compute Compositional Turnover
Using Zeta Diversity
zfa Zoom-Focus Algorithm
zfit Fit Models in a Pipe
zigg Lightweight Interfaces to the 'Ziggurat' Pseudo
Random Number Generator
zip Cross-Platform 'zip' Compression
zipR Pythonic Zip() for R
zipcodeR Data & Functions for Working with US ZIP Codes
zipfR Statistical Models for Word Frequency
Distributions
zipfextR Zipf Extended Distributions
zippeR Working with United States ZIP Code and ZIP
Code Tabulation Area Data
zipsae Small Area Estimation with Zero-Inflated Model
zlib Compression and Decompression
zlog Z(log) Transformation for Laboratory
Measurements
zmctp Zero-Modified Complex 'Tri-Parametric' Pearson
Distribution for Overdispersed Count Data
zmisc Vector Look-Ups and Safer Sampling
zoeppritz Seismic Reflection and Scattering Coefficients
zoib Bayesian Inference for Beta Regression and
Zero-or-One Inflated Beta Regression
zoid Bayesian Zero-and-One Inflated Dirichlet
Regression Modelling
zoltr Interface to the 'Zoltar' Forecast Repository
API
zonebuilder Create and Explore Geographic Zoning Systems
zonohedra Compute and Plot Zonohedra from Vector
Generators
zoo S3 Infrastructure for Regular and Irregular
Time Series (Z's Ordered Observations)
zooimage Analysis of Numerical Plankton Images
zoolog Zooarchaeological Analysis with Log-Ratios
zoom A Spatial Data Visualization Tool
zoomGroupStats Analyze Text, Audio, and Video from 'Zoom'
Meetings
zoomerjoin Superlatively Fast Fuzzy Joins
zoomgrid Grid Search Algorithm with a Zoom
zoomr Connect to Your 'Zoom' Data
zoteR R Interface to 'Zotero' via Better BibTeX
zscorer Child Anthropometry z-Score Calculator
ztable Zebra-Striped Tables in LaTeX and HTML Formats
ztils Various Common Statistical Utilities
ztpln Zero-Truncated Poisson Lognormal Distribution
ztype Run a Ztype Game Loaded with R Functions
zyp Zhang + Yue-Pilon Trends Package
zzlite Lite Wrapper for the 'Zamzar File Conversion'
API
Packages in library '/data/gannet/ripley/R/test-BioCdata':
ALL A data package
AffymetrixDataTestFiles
Affymetrix Data Files (CEL, CDF, CHP, EXP, PGF,
PSI) for Testing
BSgenome.Celegans.UCSC.ce11
Full genome sequences for Caenorhabditis
elegans (UCSC version ce11)
BSgenome.Celegans.UCSC.ce2
Full genome sequences for Caenorhabditis
elegans (UCSC version ce2)
BSgenome.Dmelanogaster.UCSC.dm3
Full genome sequences for Drosophila
melanogaster (UCSC version dm3)
BSgenome.Dmelanogaster.UCSC.dm6
Full genome sequences for Drosophila
melanogaster (UCSC version dm6)
BSgenome.Drerio.UCSC.danRer10
Full genome sequences for Danio rerio (UCSC
version danRer10)
BSgenome.Ggallus.UCSC.galGal3
Full genome sequences for Gallus gallus (UCSC
version galGal3)
BSgenome.Hsapiens.1000genomes.hs37d5
1000genomes Reference Genome Sequence (hs37d5)
BSgenome.Hsapiens.NCBI.GRCh38
Full genome sequences for Homo sapiens (GRCh38)
BSgenome.Hsapiens.UCSC.hg18
Full genome sequences for Homo sapiens (UCSC
version hg18)
BSgenome.Hsapiens.UCSC.hg18.masked
Full masked genome sequences for Homo sapiens
(UCSC version hg18)
BSgenome.Hsapiens.UCSC.hg19
Full genome sequences for Homo sapiens (UCSC
version hg19, based on GRCh37.p13)
BSgenome.Hsapiens.UCSC.hg19.masked
Full masked genome sequences for Homo sapiens
(UCSC version hg19, based on GRCh37.p13)
BSgenome.Hsapiens.UCSC.hg38
Full genomic sequences for Homo sapiens (UCSC
genome hg38)
BSgenome.Mmusculus.UCSC.mm10
Full genome sequences for Mus musculus (UCSC
version mm10, based on GRCm38.p6)
BSgenome.Mmusculus.UCSC.mm9
Full genome sequences for Mus musculus (UCSC
version mm9)
BSgenome.Rnorvegicus.UCSC.rn5
Full genome sequences for Rattus norvegicus
(UCSC version rn5)
BSgenome.Scerevisiae.UCSC.sacCer1
Saccharomyces cerevisiae (Yeast) full genome
(UCSC version sacCer1)
BSgenome.Scerevisiae.UCSC.sacCer2
Saccharomyces cerevisiae (Yeast) full genome
(UCSC version sacCer2)
BSgenome.Scerevisiae.UCSC.sacCer3
Saccharomyces cerevisiae (Yeast) full genome
(UCSC version sacCer3)
ChAMPdata Data Packages for ChAMP package
ChemmineDrugs DrugBank data set
DAPARdata Data accompanying the DAPAR and Prostar
packages
DLBCL Diffuse large B-cell lymphoma expression data
DO.db A set of annotation maps describing the entire
Disease Ontology
DropletTestFiles Test Files for Single-Cell Droplet Utilities
EnsDb.Hsapiens.v75 Ensembl based annotation package
EnsDb.Hsapiens.v79 Ensembl based annotation package
EnsDb.Hsapiens.v86 Ensembl based annotation package
FDb.InfiniumMethylation.hg18
Annotation package for Illumina Infinium DNA
methylation probes
FDb.InfiniumMethylation.hg19
Annotation package for Illumina Infinium DNA
methylation probes
FDb.UCSC.tRNAs Annotation package for FeatureDb object(s)
FIs Human Functional Interactions (FIs) for
splineTimeR package
Fletcher2013a Gene expression data from breast cancer cells
under FGFR2 signalling perturbation
Fletcher2013b Master regulators of FGFR2 signalling and
breast cancer risk
GO.db A set of annotation maps describing the entire
Gene Ontology
GWASdata Data used in the examples and vignettes of the
GWASTools package
GenomeInfoDbData Species and taxonomy ID look up tables used by
GenomeInfoDb
GenomicScores Infrastructure to work with genomewide
position-specific scores
HDO.db A set of annotation maps describing the entire
Human Disease Ontology
HSMMSingleCell Single-cell RNA-Seq for differentiating human
skeletal muscle myoblasts (HSMM)
HelloRangesData Data for the HelloRanges tutorial vignette
HiCDataHumanIMR90 Human IMR90 Fibroblast HiC data from Dixon et
al. 2012
Homo.sapiens Annotation package for the Homo.sapiens object
Illumina450ProbeVariants.db
Annotation Package combining variant data from
1000 Genomes Project for Illumina
HumanMethylation450 Bead Chip probes
IlluminaDataTestFiles Illumina microarray files (IDAT) for testing
IlluminaHumanMethylation450kanno.ilmn12.hg19
Annotation for Illumina's 450k methylation
arrays
IlluminaHumanMethylation450kmanifest
Annotation for Illumina's 450k methylation
arrays
IlluminaHumanMethylationEPICanno.ilm10b2.hg19
Annotation for Illumina's EPIC methylation
arrays
IlluminaHumanMethylationEPICanno.ilm10b4.hg19
Annotation for Illumina's EPIC methylation
arrays
IlluminaHumanMethylationEPICmanifest
Manifest for Illumina's EPIC methylation arrays
IlluminaHumanMethylationEPICv2anno.20a1.hg38
Annotation for Illumina's EPIC v2.0 methylation
arrays
IlluminaHumanMethylationEPICv2manifest
Manifest for Illumina's EPIC v2.0 methylation
arrays
Iyer517 exprSets for Iyer, Eisen et all 1999 Science
paper
JASPAR2014 Data package for JASPAR
JASPAR2016 Data package for JASPAR 2016
JASPAR2018 Data package for JASPAR 2018
JASPAR2020 Data package for JASPAR database (version 2020)
KEGGdzPathwaysGEO KEGG Disease Datasets from GEO
MM2Sdata Gene Expression Datasets for the 'MM2S' Package
MOFAdata Data package for Multi-Omics Factor Analysis
(MOFA)
MPO.db A set of annotation maps describing the Mouse
Phenotype Ontology
MafDb.1Kgenomes.phase1.hs37d5
Minor allele frequency data from 1000 Genomes
Phase 1 for hs37d5
MafDb.1Kgenomes.phase3.GRCh38
Minor allele frequency data from 1000 Genomes
Phase 3 for GRCh38
PFAM.db A set of protein ID mappings for PFAM
PolyPhen.Hsapiens.dbSNP131
PolyPhen Predictions for Homo sapiens dbSNP
build 131
ProData SELDI-TOF data of Breast cancer samples
RNAseqData.HNRNPC.bam.chr14
Aligned reads from RNAseq experiment:
Transcription profiling by high throughput
sequencing of HNRNPC knockdown and control HeLa
cells
RTCGA The Cancer Genome Atlas Data Integration
RTCGA.CNV CNV (Copy-number variation) datasets from The
Cancer Genome Atlas Project
RTCGA.PANCAN12 PanCan 12 from Genome Cancer Browser
RTCGA.RPPA RPPA datasets from The Cancer Genome Atlas
Project
RTCGA.clinical Clinical datasets from The Cancer Genome Atlas
Project
RTCGA.mRNA mRNA datasets from The Cancer Genome Atlas
Project
RTCGA.methylation Methylation datasets from The Cancer Genome
Atlas Project
RTCGA.miRNASeq miRNASeq datasets from The Cancer Genome Atlas
Project
RTCGA.mutations Mutations datasets from The Cancer Genome Atlas
Project
RTCGA.rnaseq Rna-seq datasets from The Cancer Genome Atlas
Project
RTN RTN: Reconstruction of Transcriptional
regulatory Networks and analysis of regulons
Rattus.norvegicus Annotation package for the Rattus.norvegicus
object
SIFT.Hsapiens.dbSNP132
SIFT Predictions for Homo sapiens dbSNP build
132
SIFT.Hsapiens.dbSNP137
PROVEAN/SIFT Predictions for Homo sapiens dbSNP
build 137
SNPlocs.Hsapiens.dbSNP144.GRCh37
SNP locations for Homo sapiens (dbSNP Build
144)
SNPlocs.Hsapiens.dbSNP144.GRCh38
SNP locations for Homo sapiens (dbSNP Build
144)
TCGAMethylation450k The Cancer Genome Atlas Illumina 450k
methylation example data
TCGAbiolinksGUI.data Data for the TCGAbiolinksGUI package
TargetScoreData TargetScoreData
TxDb.Athaliana.BioMart.plantsmart22
Annotation package for TxDb object(s)
TxDb.Celegans.UCSC.ce11.ensGene
Annotation package for TxDb object(s)
TxDb.Dmelanogaster.UCSC.dm3.ensGene
Annotation package for TxDb object(s)
TxDb.Drerio.UCSC.danRer10.refGene
Annotation package for TxDb object(s)
TxDb.Hsapiens.UCSC.hg18.knownGene
Annotation package for TxDb object(s)
TxDb.Hsapiens.UCSC.hg19.knownGene
Annotation package for TxDb object(s)
TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts
Annotation package for TxDb object(s)
TxDb.Hsapiens.UCSC.hg38.knownGene
Annotation package for TxDb object(s)
TxDb.Hsapiens.UCSC.hg38.refGene
Annotation package for TxDb object(s)
TxDb.Mmusculus.UCSC.mm10.knownGene
Annotation package for TxDb object(s)
TxDb.Mmusculus.UCSC.mm9.knownGene
Annotation package for TxDb object(s)
TxDb.Rnorvegicus.UCSC.rn5.refGene
Annotation package for TxDb object(s)
XtraSNPlocs.Hsapiens.dbSNP144.GRCh38
Extra SNP locations for Homo sapiens (dbSNP
Build 144)
affydata Affymetrix Data for Demonstration Purpose
airway RangedSummarizedExperiment for RNA-Seq in
airway smooth muscle cells, by Himes et al PLoS
One 2014
alakazam Immunoglobulin Clonal Lineage and Diversity
Analysis
aracne.networks ARACNe-inferred gene networks from TCGA tumor
datasets
bcellViper Human B-cell transcriptional interactome and
normal human B-cell expression data
bladderbatch Bladder gene expression data illustrating batch
effects
breastCancerMAINZ Gene expression dataset published by Schmidt et
al. [2008] (MAINZ).
breastCancerNKI Genexpression dataset published by van't Veer
et al. [2002] and van de Vijver et al. [2002]
(NKI).
breastCancerTRANSBIG Gene expression dataset published by Desmedt et
al. [2007] (TRANSBIG).
breastCancerUNT Gene expression dataset published by Sotiriou
et al. [2007] (UNT).
breastCancerUPP Gene expression dataset published by Miller et
al. [2005] (UPP).
breastCancerVDX Gene expression datasets published by Wang et
al. [2005] and Minn et al. [2007] (VDX).
bsseq Analyze, manage and store whole-genome
methylation data
bsseqData Example whole genome bisulfite data for the
bsseq package
ccdata Data for Combination Connectivity Mapping
(ccmap) Package
drosophila2probe Probe sequence data for microarrays of type
drosophila2
ensembldb Utilities to create and use Ensembl-based
annotation databases
fibroEset exprSet for Karaman et al. (2003) fibroblasts
data
flowWorkspaceData A data package containing two flowJo, one diva
xml workspace and the associated fcs files as
well as three GatingSets for testing the
flowWorkspace, openCyto and CytoML packages.
gageData Auxillary data for gage package
gcspikelite Spike-in data for GC/MS data and methods within
flagme
geneplast Evolutionary and plasticity analysis of
orthologous groups
geneplast.data Input data for the geneplast package via
AnnotationHub
geneplast.data.string.v91
Input data for the geneplast package
genomewidesnp5Crlmm Metadata for fast genotyping with the 'crlmm'
package
genomewidesnp6Crlmm Metadata for fast genotyping with the 'crlmm'
package
golubEsets exprSets for golub leukemia data
grasp2db grasp2db, sqlite wrap of GRASP 2.0
h5vcData Example data for the h5vc package
hapmap100kxba Sample data - Hapmap 100K XBA Affymetrix
hapmapsnp5 Sample data - Hapmap SNP 5.0 Affymetrix
hapmapsnp6 Sample data - Hapmap SNP 6.0 Affymetrix
hgu133a.db Affymetrix Affymetrix HG-U133A Array annotation
data (chip hgu133a)
hgu133acdf hgu133acdf
hgu133aprobe Probe sequence data for microarrays of type
hgu133a
hgu133plus2.db Affymetrix Affymetrix HG-U133_Plus_2 Array
annotation data (chip hgu133plus2)
hgu95a.db Affymetrix Affymetrix HG_U95A Array annotation
data (chip hgu95a)
hgu95av2 Affymetrix Human Genome U95 Set Annotation Data
(hgu95av2)
hgu95av2.db Affymetrix Affymetrix HG_U95Av2 Array
annotation data (chip hgu95av2)
hgu95av2cdf hgu95av2cdf
hgu95av2probe Probe sequence data for microarrays of type
hgu95av2
hu6800.db Affymetrix Affymetrix Hu6800 Array annotation
data (chip hu6800)
human.db0 Base Level Annotation databases for human
human370v1cCrlmm Metadata for fast genotyping with the 'crlmm'
package
human610quadv1bCrlmm Metadata for fast genotyping with the 'crlmm'
package
humanCHRLOC A data package containing annotation data for
humanCHRLOC
humanStemCell Human Stem Cells time course experiment
illuminaHumanv3.db Illumina HumanHT12v3 annotation data (chip
illuminaHumanv3)
leukemiasEset Leukemia's microarray gene expression data
(expressionSet).
lumiHumanAll.db Illumina Human Illumina expression annotation
data (chip lumiHumanAll)
lumiHumanIDMapping Illumina Identifier mapping for Human
lungExpression ExpressionSets for Parmigiani et al., 2004
Clinical Cancer Research paper
macrophage Human macrophage immune response
maqcExpression4plex Sample Expression Data - MAQC / HG18 -
NimbleGen
metaboliteIDmapping Mapping of Metabolite IDs from Different
Sources
mia Microbiome analysis
moe430a.db Affymetrix Affymetrix MOE430A Array annotation
data (chip moe430a)
mogene10sttranscriptcluster.db
Affymetrix mogene10 annotation data (chip
mogene10sttranscriptcluster)
msdata Various Mass Spectrometry raw data example
files
mulea Enrichment Analysis Using Multiple Ontologies
and False Discovery Rate
org.Ag.eg.db Genome wide annotation for Anopheles
org.At.tair.db Genome wide annotation for Arabidopsis
org.Bt.eg.db Genome wide annotation for Bovine
org.Ce.eg.db Genome wide annotation for Worm
org.Cf.eg.db Genome wide annotation for Canine
org.Dm.eg.db Genome wide annotation for Fly
org.Dr.eg.db Genome wide annotation for Zebrafish
org.EcK12.eg.db Genome wide annotation for E coli strain K12
org.EcSakai.eg.db Genome wide annotation for E coli strain Sakai
org.Gg.eg.db Genome wide annotation for Chicken
org.Hs.eg.db Genome wide annotation for Human
org.Mm.eg.db Genome wide annotation for Mouse
org.Mmu.eg.db Genome wide annotation for Rhesus
org.Pt.eg.db Genome wide annotation for Chimp
org.Rn.eg.db Genome wide annotation for Rat
org.Sc.sgd.db Genome wide annotation for Yeast
org.Ss.eg.db Genome wide annotation for Pig
org.Xl.eg.db Genome wide annotation for Xenopus
pasillaBamSubset Subset of BAM files from "Pasilla" experiment
pd.hg.u133.plus.2 Platform Design Info for The Manufacturer's
Name HG-U133_Plus_2
phastCons100way.UCSC.hg19
UCSC phastCons conservation scores for hg19
rae230a.db Affymetrix Affymetrix RAE230A Array annotation
data (chip rae230a)
rae230aprobe Probe sequence data for microarrays of type
rae230a
reactome.db A set of annotation maps for reactome
scRNAseq Collection of Public Single-Cell RNA-Seq
Datasets
sesameData Supporting Data for SeSAMe Package
signatureSearchData Datasets for signatureSearch package
systemPipeRdata systemPipeRdata: Workflow templates and sample
data
tissueTreg TWGBS and RNA-seq data from tissue T regulatory
cells from mice
tweeDEseqCountData RNA-seq count data employed in the vignette of
the tweeDEseq package
tximportData tximportData
viper Virtual Inference of Protein-activity by
Enriched Regulon analysis
yeast2.db Affymetrix Affymetrix Yeast_2 Array annotation
data (chip yeast2)
yeastNagalakshmi Yeast genome RNA sequencing data based on
Nagalakshmi et. al.
yeastRNASeq Yeast RNA-Seq Experimental Data from Lee et al.
2008
zebrafishRNASeq Zebrafish RNA-Seq Experimental Data from
Ferreira et al. (2014)
Packages in library '/data/gannet/ripley/R/R-devel/library':
KernSmooth Functions for Kernel Smoothing Supporting Wand
& Jones (1995)
MASS Support Functions and Datasets for Venables and
Ripley's MASS
Matrix Sparse and Dense Matrix Classes and Methods
base The R Base Package
boot Bootstrap Functions
class Functions for Classification
cluster "Finding Groups in Data": Cluster Analysis
Extended Rousseeuw et al.
codetools Code Analysis Tools for R
compiler The R Compiler Package
datasets The R Datasets Package
foreign Read Data Stored by 'Minitab', 'S', 'SAS',
'SPSS', 'Stata', 'Systat', 'Weka', 'dBase', ...
grDevices The R Graphics Devices and Support for Colours
and Fonts
graphics The R Graphics Package
grid The Grid Graphics Package
lattice Trellis Graphics for R
methods Formal Methods and Classes
mgcv Mixed GAM Computation Vehicle with Automatic
Smoothness Estimation
nlme Linear and Nonlinear Mixed Effects Models
nnet Feed-Forward Neural Networks and Multinomial
Log-Linear Models
parallel Support for Parallel Computation in R
rpart Recursive Partitioning and Regression Trees
spatial Functions for Kriging and Point Pattern
Analysis
splines Regression Spline Functions and Classes
stats The R Stats Package
stats4 Statistical Functions using S4 Classes
survival Survival Analysis
tcltk Tcl/Tk Interface
tools Tools for Package Development
utils The R Utils Package
> require("GPArotation")
Loading required package: GPArotation
> require("GPArotateDF")
Loading required package: GPArotateDF
> search()
[1] ".GlobalEnv" "package:GPArotateDF" "package:GPArotation"
[4] "package:stats" "package:graphics" "package:grDevices"
[7] "package:utils" "package:datasets" "package:methods"
[10] "Autoloads" "package:base"
> Sys.info()
sysname
"Linux"
release
"6.18.13-100.fc42.x86_64"
version
"#1 SMP PREEMPT_DYNAMIC Thu Feb 19 20:58:08 UTC 2026"
nodename
"gannet.stats.ox.ac.uk"
machine
"x86_64"
login
"ripley"
user
"ripley"
effective_user
"ripley"
>
> require("stats")
>
> fuzz <- 1e-6
> all.ok <- TRUE
>
>
> data(ability.cov)
> L <- loadings(factanal(factors = 2, covmat=ability.cov))
>
> # quartimax
>
> LG <- quartimax(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = FALSE, eps=1e-5, method = "quartimax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 2.071172e-10 2.57213e-10
> LG <- quartimax(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = TRUE, eps=1e-5, method = "quartimax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 3.59409e-11 3.001116e-11
>
>
>
> # quartimin
>
> LG <- quartimin(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "quartimin")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 2.399083e-11 2.122768e-12
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Factor1 Factor2
Factor1 0.00000000000000000e+00 -2.40939112794436028e-06
Factor2 -2.40939112794436028e-06 -4.44089209850062616e-16
>
> LG <- quartimin(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-5, method = "quartimin")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 1.159026e-12 1.261096e-11
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Factor1 Factor2
Factor1 3.33066907387546962e-16 -1.61240321056022040e-06
Factor2 -1.61240321056022040e-06 -2.22044604925031308e-16
>
> # oblimax commented out as it is gives problem quite consistently
>
> #LG <- oblimax(L, normalize = FALSE, eps=1e-5)
> #LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "oblimax")
> # Oblimax fails for fuzz = 1e-6. But succeeds for 0.01
> # if( 0.01 < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
> # cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
> # cat("difference:\n")
> # print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
> # all.ok <- FALSE
> # }
> # if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
> # cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
> # cat("difference:\n")
> # print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
> # all.ok <- FALSE
> # }
>
> #LG <- oblimax(L, normalize = TRUE, eps=1e-5)
> #LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-5, method = "oblimax")
> # if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
> # cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
> # cat("difference:\n")
> # print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
> # all.ok <- FALSE
> # }
> # if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
> # cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
> # cat("difference:\n")
> # print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
> # all.ok <- FALSE
> # }
>
>
> # entropy
>
> LG <- entropy(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = FALSE, eps=1e-5, method = "entropy")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 2.380919e-10 2.879861e-10
> LG <- entropy(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = TRUE, eps=1e-5, method = "entropy")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 2.954305e-12 2.090064e-12
>
>
>
> # simplimax
>
> LG <- simplimax(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "simplimax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
>
> LG <- simplimax(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-5, method = "simplimax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
>
>
> # bentlerQ
>
> LG <- bentlerQ(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "bentler")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 5.007946e-09 1.588763e-10
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Factor1 Factor2
Factor1 0.00000000000000000e+00 -3.94838463022573194e-05
Factor2 -3.94838463022573194e-05 0.00000000000000000e+00
>
> LG <- bentlerQ(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-5, method = "bentler")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 7.240895e-09 6.148903e-08
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Factor1 Factor2
Factor1 -3.33066907387546962e-16 -1.01274244345361808e-04
Factor2 -1.01274244345361808e-04 3.33066907387546962e-16
>
>
> # bentlerT
>
> LG <- bentlerT(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = FALSE, eps=1e-5, method = "bentler")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 1.091501e-10 1.295172e-10
> LG <- bentlerT(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = TRUE, eps=1e-5, method = "bentler")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 2.900089e-09 2.613755e-09
>
>
> # geominQ
>
> LG <- geominQ(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "geomin")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
>
> LG <- geominQ(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-5, method = "geomin")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
>
>
> # geominT
>
> LG <- geominT(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = FALSE, eps=1e-5, method = "geomin")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 2.031329e-12 2.95992e-12
> LG <- geominT(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = TRUE, eps=1e-5, method = "geomin")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
>
>
> # infomaxQ
>
> LG <- infomaxQ(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "infomax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 8.975e-15 5.708274e-12
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Factor1 Factor2
Factor1 2.22044604925031308e-16 1.70503956775647225e-06
Factor2 1.70503956775647225e-06 -5.55111512312578270e-16
>
> # changed to eps 1e-6 in order to pass the test.
> LG <- infomaxQ(L, normalize = TRUE, eps=1e-6)
> LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-6, method = "infomax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
>
>
> # infomaxT
>
> LG <- infomaxT(L, normalize = FALSE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = FALSE, eps=1e-5, method = "infomax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 4.178376e-12 4.43328e-12
> LG <- infomaxT(L, normalize = TRUE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = TRUE, eps=1e-5, method = "infomax")
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 2.276024e-11 2.200358e-11
>
>
> # CF Equamax Q
>
> LG <- GPFoblq(L, normalize = FALSE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
> LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 5.955028e-12 3.25221e-13
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
[,1] [,2]
[1,] -5.55111512312578270e-16 1.40617321436886655e-06
[2,] 1.40617321436886655e-06 -1.11022302462515654e-16
>
> LG <- GPFoblq(L, normalize = TRUE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
> LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 7.097005e-12 2.832944e-11
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
[,1] [,2]
[1,] 3.33066907387546962e-16 -1.64903804228400119e-06
[2,] -1.64903804228400119e-06 2.22044604925031308e-16
>
>
> # CF equamax T
>
> LG <- GPForth(L, normalize = FALSE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
> LGDF <- GPForth.df(L, normalize = FALSE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 4.167408e-11 4.793769e-11
> LG <- GPForth(L, normalize = TRUE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
> LGDF <- GPForth.df(L, normalize = TRUE, eps=1e-5, method = "cf", methodArgs=list(kappa=2/12))
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
>
>
> # targetQ
> LG <- targetQ(L, Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2), normalize=FALSE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = FALSE, eps=1e-5, method = "target",
+ methodArgs=list(Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2)))
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 3.94618e-11 3.993705e-11
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
>
> LG <- targetQ(L, Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2), normalize=TRUE, eps=1e-5)
> LGDF <- GPFoblq.df(L, normalize = TRUE, eps=1e-5, method = "target",
+ methodArgs=list(Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2)))
>
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 3.719851e-12 5.003924e-12
> if( fuzz < max(abs(unclass(LGDF)$Phi - unclass(LG)$Phi))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$Phi - unclass(LG)$Phi), digits=18)
+ all.ok <- FALSE
+ }
>
> # targetT
>
> LG <- targetT(L, Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2), normalize=FALSE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = FALSE, eps=1e-5, method = "target",
+ methodArgs=list(Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2)))
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
Factor1 Factor2
general
picture
blocks
maze
reading
vocab
Factor1 Factor2
SS loadings 1.885373e-11 2.512168e-11
>
> LG <- targetT(L, Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2), normalize=TRUE, eps=1e-5)
> LGDF <- GPForth.df(L, normalize = TRUE, eps=1e-5, method = "target",
+ methodArgs=list(Target=matrix(c(rep(1,3),rep(0,6),rep(1,3)), 6,2)))
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
>
>
> A <- matrix(c(0.664, 0.688, 0.492, 0.837, 0.705, 0.82, 0.661, 0.457, 0.765,
+ 0.322, 0.248, 0.304, -0.291, -0.314, -0.377, 0.397, 0.294, 0.428,
+ -0.075, 0.192, 0.224, 0.037, 0.155, -0.104, 0.077, 0-.488, 0.009),
+ ncol = 3)
> T0 <- matrix(NA, ncol = 3, nrow = 9)
> T0[1, 1] <- T0[2, 1] <- T0[1, 2] <- 0
> LG <- targetT(A, Target = T0)
> LGDF <- GPForth.df(A, method="target", methodArgs=list(Target = T0))
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
[,1] [,2] [,3]
[1,]
[2,]
[3,]
[4,]
[5,]
[6,]
[7,]
[8,]
[9,]
[,1] [,2] [,3]
SS loadings 4.298329e-09 1.12457e-08 5.386704e-10
>
> fuzz <- 1e-2 # Because loadings to zero, lower the bar to same results
> LG <- targetQ(A, Target = T0)
> LGDF <- GPFoblq.df(A, method="target", methodArgs=list(Target = T0))
> if( fuzz < max(abs(unclass(LGDF)$loadings - unclass(LG)$loadings))) {
+ cat("Calculated value is not the same as test value in test rotations 1. Value:\n")
+ cat("difference:\n")
+ print((unclass(LGDF)$loadings - unclass(LG)$loadings), digits=18)
+ all.ok <- FALSE
+ }
Calculated value is not the same as test value in test rotations 1. Value:
difference:
Loadings:
[,1] [,2] [,3]
[1,]
[2,]
[3,] -4.737575e-01 4.441155e-01
[4,] 2.013065e+00 -1.875580e+00 -2.990878e-01
[5,] 1.786464e+00 -1.663424e+00 -2.666271e-01
[6,] 2.391433e+00 -2.229573e+00 -3.535882e-01
[7,] -3.829006e-01 3.582927e-01
[8,] 2.033391e-01 -1.933861e-01
[9,] -2.683019e-01 2.509629e-01
[,1] [,2] [,3]
SS loadings 1.28826 2.348151 0.6468996
>
> # pstT
> # This won't converge properly
> # No further investigations performed.
>
>
>
> cat("tests completed.\n")
tests completed.
>
>
>
> if (! all.ok) stop("some tests FAILED")
Error: some tests FAILED
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc