51463079af5c3754f6927b99e6a0f908 *DESCRIPTION
54d235dfff754b886c0e0934771385ec *NAMESPACE
6d8af8d1d56b6a90647037fe010f807c *R/abc.R
13bddd4786fbb0bde83668cc45f210cb *R/accumulators.R
f631c0b055cd77901154c1d136aff661 *R/as_data_frame.R
cb687fab11bfce9f1a2d726c243d5b92 *R/as_pomp.R
8d7ecb5621cb992c2757682458d51883 *R/bake.R
7a698f60ac19e40e11b94809ac48d845 *R/basic_components.R
2de51ec5eac107a707ba48c0cce732ef *R/basic_probes.R
5f3038c1a11489de016c786d5a1b24f1 *R/betabinom.R
b6f09f68592557a004deb8d82ed0868c *R/blowflies.R
feb611379a7abf31a353e643f17c68ba *R/bsflu.R
09554c4b7c087eb815f6b0c81517c040 *R/bsmc2.R
bc9dc3807f0a8a30af9823d4b4e1f4fa *R/bsplines.R
cdd887c3f2548eb8310f530f6fc456e6 *R/builder.R
da34d214ed22fd5b82971aec28d2419c *R/childhood.R
535721b2d9b73fbfabc2d11d146ad2c6 *R/coef.R
2bc1b38d8b86bc67563ee5d8e6bf810c *R/conc.R
07cd8c3af4ce4f87dedd10fbee4f4608 *R/concat.R
ff7402e930eaa458e1570b1eee77625d *R/cond_logLik.R
4b73d540b46cc48a1894baf3e546d7b1 *R/continue.R
f8867624ab320a1ca530aa7d104881a5 *R/covariate_table.R
3bc8f8ffc8e4165a802782ad37b471bf *R/covmat.R
d752903c705d87feb07d7bf023978e7c *R/csnippet.R
04e5dc33fa5b31ade55113e5d6558e22 *R/dacca.R
639f4fb28dfd812f2fc827aa611a87ec *R/design.R
3c824e41551187ae643f4f0ecd3b29d0 *R/dinit_spec.R
f94bcafb7fcfd973af0474dc17a32dce *R/dmeasure_spec.R
fb71008b33f51532dfe58ea6ed07bac2 *R/dprocess_spec.R
9b8685bef45fbd4c5ea70e81c8a58079 *R/ebola.R
db4c6e84f35ef215f692e8ecc17b5645 *R/eff_sample_size.R
8da8c414574cb8072d1f39a163ccc47e *R/elementary_algorithms.R
6deb6654e855dc150bd03a58c1fc9416 *R/emeasure_spec.R
0c5d8fc35def4a1acc4dc27ab54a4458 *R/estimation_algorithms.R
87265a4ea0d317bb22d46d11bfbe20c1 *R/eulermultinom.R
206b859ec2f3cb6755cbdaedebce9fe8 *R/extract.R
50bee5e300a38a4f6bde3b94a0702466 *R/filter_mean.R
bd6a9b9d6244104e3eca2f425b4d46f0 *R/filter_traj.R
c4383692c0fbc9aca7a7aa7dbbe73e3a *R/flow.R
6c93fad75f55769019cfb4fd7c0f7e64 *R/forecast.R
21c73dc2b64b4dbe8f2e8294187a1f7d *R/gompertz.R
be8f4c302a6db1b0e35292c437490faf *R/kalman.R
7d35cca3f7fbcc657cf76482d3dea747 *R/kf.R
6b0c071377dcf8ea3c115204646480b5 *R/listie.R
1bb879d4ba35f6981a23ad1028292541 *R/load.R
f6fe5d878624eb26a1d2e908dff3b048 *R/loglik.R
bd56343d20ce9b42686759e9b651ade9 *R/logmeanexp.R
563e6dd56d13d9101258500c922094cb *R/lookup.R
e49fe403e98fd2ea9980038dcd5c2788 *R/mcap.R
4471d34a29fd01739b880c020ae21d68 *R/melt.R
213c8672b09da3d00e99beec5e3cd82c *R/mif2.R
03ff08a196f84913e43af2e318187e71 *R/nlf.R
31dca1d255e1fddc4d169dcececfed06 *R/objfun.R
9ada71ae3b78adb6493cc6208afa857c *R/obs.R
4fe637a36d7a376774aabfca33eaf00d *R/ou2.R
42edd7b2df8f8429731fb5301de93a54 *R/package.R
d86d2c37e97b2281feaba000598dda56 *R/parameter_trans.R
6a36ee90be1623a9d5f65f66dd1db1ab *R/parmat.R
08e338bb775cf509f7268c45b7900b2c *R/parus.R
afe4b7c02cd4ad7da389a2aef6badb8d *R/pfilter.R
896e000382624092d1f73ef4ec15670f *R/plot.R
dde666c244443b2bdbbfad3014fb0b9b *R/pmcmc.R
0c3bb9f2bc302f8d46e007a3399eee64 *R/pomp.R
dab4f0738dbcf9313530cda3ba0c62b4 *R/pomp_class.R
31ee40d2a4d8917f3f3f35fd7d0fff4c *R/pomp_examp.R
2dbaee4a6c9c9483c216d57c13ea268a *R/pomp_fun.R
571f769acc35c2e89bc6ee13596462d6 *R/pred_mean.R
f1e7a49c24c2ca2d58cbe995526270e0 *R/pred_var.R
df0959485eb78a4fe68e9ca1338dfd5b *R/print.R
4f39aa00dfc31a7af68e58fa60ca0929 *R/prior_spec.R
9fde96dd9e3c757cdf780fd9397d1661 *R/probe.R
bdc388966954d7d6766518de5256f8c1 *R/probe_match.R
00d7d12ff3213e2dace77a5c502259f5 *R/profile_design.R
66755ca59d358b700f668589ce93c53e *R/proposals.R
f864587fe3777f6b9b35a1f65feff785 *R/pstop.R
fbf4e75ddaba91862fe13a2add0ec59c *R/resample.R
16e6f83b7c0a3d1c551b5884cd02d29c *R/ricker.R
ef0042515b34afe987a6a250fa0fbbcc *R/rinit_spec.R
80d92614b9252a543c48347ecdcfb8a3 *R/rmeasure_spec.R
7f7c0492682f4a1fa94c58525fcadd01 *R/rprocess_spec.R
83d3f7778d4686332c4e4e3f15ad6310 *R/runif_design.R
756e499a3ee477b98ec84951ee934dcd *R/rw2.R
b1517f61ad704f608a03f5490c59ae47 *R/safecall.R
e32410fb81137b84cb1b7176029e7bdc *R/sannbox.R
070be0b84ceba51b1f4b83f1daa4a3bb *R/saved_states.R
e6ef5c06040182a358e2be6474aea942 *R/show.R
d47e4a0b70992a587919d92e5409c68f *R/simulate.R
8b6617f1371950101055f0c2727a7feb *R/sir.R
1904cbb09caeaebd4ee1cec2789b5d25 *R/skeleton_spec.R
210272baffba2896f72d9a7dd6d4f405 *R/slice_design.R
c99777bac3c84526613a698d9a54992a *R/sobol_design.R
0a753a743bd14e45fdf6327130b9ff8b *R/spect.R
82abb980bfdd849e1847bb82e7d1eaf3 *R/spect_match.R
e53e770d60de589412d11256523a859e *R/spy.R
6814611ab9c3ab71bba4bbd3e8394703 *R/states.R
da861b9e6e1a39f663f951fa16c18d00 *R/summary.R
b4615d07cb61b2544087eb6094d3cc1d *R/templates.R
ef005768c957e55f4e7f41b62ce2815d *R/time.R
a0abd6c4df829f764c3fdb32527d0724 *R/timezero.R
8cb2de88f8e3c66e12f7449f2d9955f0 *R/traces.R
7a4e73d7831d6e162aa6cbb179be62ab *R/traj_match.R
415e075d1979518790466cb852cb522a *R/trajectory.R
02b4ede7b07686b7837cf7e10a043b14 *R/transformations.R
03d0f43e130dd14c34e9b2a345db5af8 *R/undefined.R
e60a9c064d488d79b910a8cb126c3d1d *R/userdata.R
f9ff9a7993dc364c1d5f4adae7f41147 *R/verhulst.R
d74c11f449f65238916f6922c3a8942c *R/vmeasure_spec.R
e844c4c432ac8d94802298ec8bfc81ca *R/window.R
3c8847752a02a7c11d4c09f50a8d488c *R/workhorses.R
e3eb08eadf6cd19d9284f91e302fc161 *R/wpfilter.R
4c70dfa14ffaca0304db5509ce8372a8 *R/wquant.R
205ec173f20d3cb366c98833fa0f9f27 *README.md
76e123f5dcc8dee07678412adc0a2a84 *build/partial.rdb
13c72061fa0f2bd4408ecf7578b1b0e4 *data/LondonYorke.rda
4665eb3edd8952544df3a67c4d1d2bba *data/blowflies.csv.xz
7a57d3d110edfc646c694f73003dd88b *data/bsflu.rda
03a271ac9916fa1273a395bd89595bbb *data/ebolaWA2014.rda
e3680c5037f686c85733a6d269b09d00 *data/ewcitmeas.rda
fee50927d397b475cb41977d557468fe *data/ewmeas.rda
0e0eda4824bc68535da32d9aa065fae7 *data/parus.csv.gz
fd1556f7c09d23dedb8c3c92ac122048 *inst/CITATION
d32239bcb673463ab874e80d47fae504 *inst/GPL
cb20051e3fd4015b6ff0f483f81dd45d *inst/NEWS
eaff9fa802150e1b9b039c4bc0a431b2 *inst/NEWS.Rd
aedc3790615732936c291759e9c7cb13 *inst/doc/index.html
b2084cfec7389ddf47d9ec51eb1e4f49 *inst/include/pomp.h
1e4cd0d771a671b5bfba81f6f1946f0e *inst/include/pomp_defines.h
2e6746078298817254dc373cc46fe1bb *man/abc.Rd
6bb95656b7ed7758aa52b0eb28a7b8e0 *man/accumvars.Rd
9f08db5c6ce2a47919f1a16bf2fd8aba *man/as_data_frame.Rd
9fb528e7af70e75a272b51ec561e8af5 *man/as_pomp.Rd
a1a36e49036cb2fb1f09231edf441bfe *man/bake.Rd
2a8f0caccbe3cb4e66619282193f036b *man/basic_components.Rd
1101cdebc581ef4a3ab19500618519d1 *man/basic_probes.Rd
e926e800b87a2176ba09f133fbfe0a5c *man/betabinom.Rd
962ef9a577283dc5405f12714c536056 *man/blowflies.Rd
d4b84dbb38e1c4806653c46cb9de2fbb *man/bsflu.Rd
81bd90e30e69cc01f3096d96281a0b69 *man/bsmc2.Rd
8652c7533b2bcc912417a3d448f32764 *man/bsplines.Rd
21dadaff1f985bc757e2359f25a6760b *man/childhood.Rd
bc30ac21d3ed53b6ee1e5acbd38b81c4 *man/coef.Rd
fb40e04c620dcafc9f4c9ce2aed10beb *man/conc.Rd
95320c62aadb1a7b1eb72b1524db5e7d *man/concat.Rd
3e4770d698a37b4775ed27232e9fa9c1 *man/cond_logLik.Rd
14d96619c104404b01b568996f844595 *man/continue.Rd
9f8d9ea8db0e5bbf1a92c302c705eb05 *man/covariate_table.Rd
6327efaf55e81adbcddbc1b6b30b146e *man/covmat.Rd
2ff59f3ee186d5aab35d8121bdb6fa33 *man/csnippet.Rd
cac1435936937738a20a47f97c34771d *man/dacca.Rd
00cebf9775d65b129bfeafd47556b24b *man/design.Rd
606a908d61a2047cc22239d734d4a693 *man/dinit.Rd
f3cab6647f50c73a6065edb2b707b3a8 *man/dinit_spec.Rd
f20cb018a6dcb5826b29ca539059ccaf *man/dmeasure.Rd
1f626e10157e077eafba523b31828d6d *man/dmeasure_spec.Rd
112d8db217efb5a21ea07c6656a1c786 *man/dprior.Rd
de67a85ba86fa9119863f4d9b6bb16f6 *man/dprocess.Rd
e571f548852cf70f60bdaa4ffd199696 *man/dprocess_spec.Rd
3079b518e38cac9beecde0f4da5e43a2 *man/ebola.Rd
ff4ebd73e0c5ed86ddffe1285bc9cfad *man/eff_sample_size.Rd
e7cdc20ba08adedfdf6f2b8804f34b3b *man/elementary_algorithms.Rd
cbf0bbeea6c25ed2a4885b9ab95c8c30 *man/emeasure.Rd
f853c6ed874d7db3a9a9c5ffa19e4ff7 *man/emeasure_spec.Rd
1235f1827cf3936e60c415f3fc501d5b *man/estimation_algorithms.Rd
4a7591363bde53572fe6a80677a2613e *man/eulermultinom.Rd
89ee500f54cfd328146f304355044cf2 *man/filter_mean.Rd
d4d786e9fe9d214e29790433a4f6c60b *man/filter_traj.Rd
9bc7e7ea4cf2c04fb6459245a218e339 *man/flow.Rd
9e01381d92d41764f4e53bf5892d368d *man/forecast.Rd
540def9c66509ebb306339cac70216d4 *man/gompertz.Rd
54fd771864e46342a78a1fa996c18709 *man/hitch.Rd
7a6d2998fff97b8e4e6838be47df0dfd *man/kalman.Rd
a155c851cb3a0eb2073f3ac0da57ce01 *man/kf.Rd
717d7ff80e237c597be1d77a1d4c6589 *man/listie.Rd
293e8f4c8c73c4a7ca6709d33bc187d1 *man/load.Rd
d9d42db10921a6f4e9d12f7bac3d71ff *man/loglik.Rd
dc6c9c16cdbd4dafca0bdcc63534130a *man/logmeanexp.Rd
eb975cd40810013c77835c4b23af90db *man/lookup.Rd
106c24c88bd59d342b6058d5c774c0d6 *man/macros/citations.Rd
9421517a3f4e68bdffe2659f06a7ef16 *man/mcap.Rd
5c25020c3fcbda52f565099c30f523b4 *man/melt.Rd
cbbca1fa2a3bd9f21a6dbc5677714abc *man/mif2.Rd
7157a07490430bfbd8f0af3fdb68a912 *man/nlf.Rd
582721c556f3c6a05014ee173fa56d95 *man/objfun.Rd
a64d44691a7b96117391f6e0a394f191 *man/obs.Rd
feb079704c05ac5b314e0152e20c8cc3 *man/ou2.Rd
3a867d707b91891b2442c8d4939a9534 *man/pStop.Rd
0f9962e9c229439ae183922cf72d20e1 *man/parameter_trans.Rd
b5179b319c389fa4578a9caff3657f8e *man/parmat.Rd
5f3700cb1e4154da3be8cdb92e1035b8 *man/partrans.Rd
cc55364a2a11c8dd53238845314a8ca2 *man/parus.Rd
3038be14a7af22c749f79ebd87629f4f *man/pfilter.Rd
7a15ccec5f968e005141d8c59e90146f *man/plot.Rd
181dc98f43aa7da340c558fc5bfc9c27 *man/pmcmc.Rd
c5bfe909917ecf72a4d32219abfd4251 *man/pomp-package.Rd
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5ae46356ad061e42538e8f72f79c3011 *man/pomp_class.Rd
b7c843bae32b7d2b155e57c479522951 *man/pomp_examp.Rd
99c73660998cc5f2994c5345b383a842 *man/pomp_fun.Rd
591d0d9dddf9f7a4848d22eef65b5f2d *man/pred_mean.Rd
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b16bc18bec634174729c5d9805776236 *man/print.Rd
6e64aff136c4cdf96ab071ded7ac6d2a *man/prior_spec.Rd
d129107dc9e296b65e43c1990df8f0c0 *man/probe.Rd
d9ce6cf2a125ec39cd95cc1e8ecaabee *man/probe_match.Rd
975f999aa7bab726bae8d0ef154b49ff *man/proposals.Rd
523380e307fff1a0c534b47a53dd04f0 *man/resample.Rd
05d2e212a28acd74e61f4b35aa621d80 *man/ricker.Rd
533ee98e9b337a62e5b39f04ddb41300 *man/rinit.Rd
4b6a5794f522c0a6ebd15047fe7d73ee *man/rinit_spec.Rd
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5abd03f3c6a0a044f6e0f0e8ff7d9c70 *man/rprior.Rd
09c4aabb28622be0e92e3eeb2f70ebf9 *man/rprocess.Rd
03f6f0424a4f04dbefa78f76a7182154 *man/rprocess_spec.Rd
44b7e832b10407b538886575940eeb98 *man/rw2.Rd
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1cca9b665714c441fffc2624ee1710cd *man/simulate.Rd
cfbd539bfa59cd421d89957de6c51a94 *man/sir.Rd
3c354117496d1bf11e026c3a59607d36 *man/skeleton.Rd
503ead0f38ae7330fa7447340e390abd *man/skeleton_spec.Rd
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98e8abfbe6c4d7f549d52849d164d922 *man/wpfilter.Rd
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2a6f9e9e044a78154d3cfda5936d6f48 *src/Makevars
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7cd2b51c8831c2623cb6bd9fde2dd6a4 *src/dprior.c
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8dd0d7f7ae63c24ecdf541fb32a173d0 *src/emeasure.c
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d936e0b428e82c4f3a9d0b313f61b009 *src/init.c
0841b261a37a05a59898b3174b82c5ce *src/internal.h
4b34aa5336cd84ad9c03dca11fcfffd6 *src/logmeanexp.c
eca2d1bee73729509b361fe785ee0a3f *src/lookup_table.c
b747d8c64f5c3ad6c5e676d5ea1ba52f *src/mif2.c
27e711fe98e1de0c7b0f87bb38af424e *src/ou2.c
ec46e939c9111d38e1e0877dc4c2760a *src/partrans.c
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37967953c67598cd4e36b97666948e42 *src/pomp.h
1e4cd0d771a671b5bfba81f6f1946f0e *src/pomp_defines.h
3ef04240df81237bb5a80b6b74cac65f *src/pomp_fun.c
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0aca2f4d26e8ce0076969133174e287b *src/probe.c
e7a6d1c52a1214a00308a1c6104319ea *src/probe_acf.c
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19a17e08ca58f82c8e46319ff9eef80b *src/probe_nlar.c
aedc6518b0a0bc1d89aa785fc778b3b0 *src/resample.c
bdc747ae88849f4bd7e935d91c62145c *src/rinit.c
b6f2decd90197584dfa2b58dd2a7199b *src/rmeasure.c
f310c5afdae1ff18f3c93f042c9f063e *src/rprior.c
ae38dfd813c0f858ce41d1454e5d7fcc *src/rprocess.c
da6446a38bc0c8009fa11c9733d24d6c *src/simulate.c
b6fe5e10293ef4c75e98239d6b435d86 *src/skeleton.c
f59dd0059cdd443a58c43bf2755f66e5 *src/soboldata.h
a579079ce932aae31c893e25ce5aa4f4 *src/sobolseq.c
a8eb9d990e80344c36795376b473ad57 *src/ssa.c
6549ed53d24a9fbb89d11d410c31b2eb *src/synth_lik.c
f6dc8c641c8e675d11f7836954391702 *src/trajectory.c
f06c799ac06b81f8cfc55115ec895087 *src/transformations.c
7c4468db9a21a9105eb8ccda843f0fb1 *src/userdata.c
7d67a72ff41f6fa813abda669141d67f *src/vmeasure.c
083f4a7e4453fa20dfe58dd3a3e1d343 *src/wpfilter.c
