c34e8be585c8452c64706046a482599b *DESCRIPTION
334e1b89cc44b9723fef283c126a863e *NAMESPACE
ef98bb9410a3aa8dc626929de7225688 *R/CancelProgress.R
342402493b2fbec26f152394829e89a8 *R/CovariateResultReader.R
b6cc0be88a98a5c4e10c01fd448b41d1 *R/CovariateScenarioUtils.R
8808bf730695afff6672e141a24cd1b9 *R/CovariateSearchConfig.R
1f53646599684885fd5b9f93d82a59a6 *R/CovariateSearchLogic.R
ace2fca070519bd07145285f3b9adbd1 *R/FailProgress.R
7649cb5a84d9e2549711a24a2ad7f5f9 *R/OLDrunNLMEInitialRun.R
0a6bfc5538265ef9a589c4a895e3df77 *R/ReportProgress.R
baec5098bdbe399ea83ed997003866cb *R/UpdateMDLfrom_dmptxt.R
b665d25dae01a9d3443d4efb8cc29ac3 *R/UpdateProgress.R
d32212b3a014779d62e0e10305477ded *R/UpdateProgressMessages.R
b5af87eacdfd8b64fc45ef616625df86 *R/bootstrapShrinkage.R
a4ffade2ca29c42154d20c2dc80f69c9 *R/cat_filesWarnLong.R
e13876cd08c3efd71590ded1b39aa3bd *R/checkHostParams.R
98046df6975033233d2c1d9c8e3827b5 *R/collateTables.R
1f5a24361bf295a04db22f647c3a8cb6 *R/collectJobErrors.R
a12a17ee44aa994b08767ee035c955d0 *R/collectJobResults.R
a6f6151b761eb9ae5bbcff53f90a56ed *R/collectJobResultsGeneric.R
a6fb8e36ee38120e808205b3adb34f56 *R/concatenateInitEstimates.R
006eac66c32bf5bab99b66615a923cd3 *R/copy_InputFiles.R
416951cb4a01356424c4957ca26cbcb5 *R/copy_filesWarnLong.R
e49ef13cf4685505fa9dc194e7e031e9 *R/create_jobdirs.R
398c547f50fbf067cbf7af260a561862 *R/generateConvergenceFile.R
5f2099c7fac6dbcd557a4b3517084446 *R/generateEtaSpreadsheet.R
c475f1c23c63e668846de44bb5bc9adf *R/generateGenericTable.R
8ca961b7f941e9cc3d7d70de96164b58 *R/generateJobResults.R
07d890eca76087c9cd387220fcd17554 *R/generateNLMEScriptAndRun.R
4dad2caadeb0c71fec02e113bf1d45fa *R/generateNonparamSummary.R
a062a9fdc1ef275adda3c57d08d1ba57 *R/generateOmegaEtas.R
f8bb6ea9412c4e7819e5fcb4810d2d72 *R/generateOverallSummary.R
135f05045ccc0431b9d407ce54b01856 *R/generateResiduals.R
22a9ed6d2d0389309bee68f7b5d6cbe9 *R/generateSecondary.R
1fc8a0f7dc429e2d4250a9fd6f47b8a5 *R/generateStatusWindow.R
8cbffc5d5c654def09c81151bae9a14b *R/generateThetaCovCorFiles.R
781271f9c1534e9451081b37805827f4 *R/get_VIFs.R
df2a7caad38c29fe166e070103d26025 *R/get_bluptable.R
e7d5368a2f8f0f9692b8062f2f0db7ec *R/globals.R
029be22f9ab08959728c3ae392d9beca *R/gridSubmission.R
12d593fc848fb8f9bece77579c5c74b8 *R/moveStepwiseOutputFiles.R
452a57ecf7343dd7b77b3f12bb7e29b5 *R/mpiBatchPlanning.R
e3e22bba1426e9f5fc0c08cf1abe94b0 *R/multiCoreGeneric.R
dee76e776fdb07c14d58cfd8e0609a53 *R/parallel_utl.r
0823660a60aafe8d7607ea45784ba557 *R/parseShrinkageLines.R
9574edc6af5aeea7109080a68be90ab9 *R/parse_outputFile.R
ea605d4c98ae33064628ce02e92735e6 *R/performBootstrap.R
457e0c13fd2956afafae776a2d756a41 *R/performEstimationOnSortColumns.R
b2d0338dc732d349750b11c14d9a003f *R/performParallelNLMERun.R
b2e38b3eb15431f3d8dd525a6aba8822 *R/performProfileEstimation.R
34ee740b063816fb8e097d1c9f708285 *R/performShotgunCovarSearch.R
8d9005b45265a15ca5cbc7ec8783b2b2 *R/performStepwiseCovarSearch.R
53734b10eb21733dbd7caf27dd3a8536 *R/readEtaCovTxtFile.R
ca5ecc3c4228a4dfd336265b8646f9b7 *R/readProgressDotTxt.R
e48c2801e29dc2fc1e4ff486cf2c32b9 *R/readProgressUpdate.R
ffa557d254aac0e0540871b727c146cf *R/readStrCovTxtFile.R
098f448e2674be2749d7f00a7484c72b *R/reconnectGenericGridJob.R
36873d5d5163bc360400af73c1addabc *R/reconnectToBootstrapNLMERun.R
782d24b3825f5885633397f4879b8563 *R/reconnectToGenericNLMERun.R
7eb6b59a4948eb853ad94335b95164b6 *R/runNLMEGenericSample.R
cae4dbcbd8079a3ac7961cdf1963ca54 *R/runNLMEInitialRun.R
71ae9b04a0eb656758882ad715aded1a *R/runNLMESample.R
2c7b37cbc071d19c6e4947f13da383f6 *R/scmArchive.R
30d2347b1d560504fadd9b606682e02d *R/scmDmpNormalize.R
161bd826b0c943017c467f2012618280 *R/sortByColumnAndGenerateControlFile.R
f84afff5b0427dd6ffe2a8795afcf23a *R/startAndMonitorMulticoreJobs.R
ec972633bd639116dea7e5b1648ec59a *R/startGenericGridJob.R
4e8fee9caf719597da7460afe82440de *R/summarizeBootstrap.R
462a673e2142fabe177744da808e4d68 *R/summarizeCovarSearch.R
3803987ad5c587daea9b92853d8c71c1 *R/summarizeProfileEstimation.R
d4d44b75a0bb61615a8d14b8ef7f8268 *R/summarizeSimpleEstimation.R
ab6818062fa50aa647c8e4733180e767 *R/summarizeStepwiseCovarSearch.R
7e09cf6951ac48830c722ea044a96fda *R/tdl5_utils.R
fff1161ef5ddcb0a08e35bb77c2eadd8 *R/updateInitialStatus.R
d1e3d418093670fd1be38b946b338a8d *R/writeOutGlobals.R
0040c7bf441014c8f6a466c758faa75a *R/write_function_to_file.R
471860a778ebe6f62e71848a8d9ac517 *README.md
48384fe93094912a2eb71d441a4f5350 *inst/extdata/performBootstrap/cols1.txt
4de52aa0d28b0ceced4835ce828cd75d *inst/extdata/performBootstrap/data1.txt
12621ef263676d1aaa6335fc2ff37b70 *inst/extdata/performBootstrap/jobArgsCombined.txt
d5833e976c5a174266b54bb7c89b7495 *inst/extdata/performBootstrap/jobControlFile.txt
566dd5357bd154d1a6769fcd4a004f16 *inst/extdata/performBootstrap/out.expected
d5d237c45ab6c7289c877be08f4bbeaa *inst/extdata/performBootstrap/test.mdl
256d71bc0c9062605596934fb9eb6297 *inst/extdata/performEstimationOnSortColumns/Overall.expected
b9fd85e88578abbd80d506a5f1c2d8f0 *inst/extdata/performEstimationOnSortColumns/cols1.txt
794ba85168d772a4a9fc8ccaa5ab6053 *inst/extdata/performEstimationOnSortColumns/data1.txt
3873b6faa603d337a86d6686a4f6df44 *inst/extdata/performEstimationOnSortColumns/jobArgsCombined.txt
32cdc7c651de796442c88e29cb563c0f *inst/extdata/performEstimationOnSortColumns/jobControlFile.txt
9cb0dd0e2538dcdbac8fa72a16c0af62 *inst/extdata/performEstimationOnSortColumns/test.mdl
91b1b0c93386f38e88c6181757c7d900 *inst/extdata/performParallelNLMERun/Overall.expected
47771aac0560cad7832cff9d490696d0 *inst/extdata/performParallelNLMERun/cols1.txt
794ba85168d772a4a9fc8ccaa5ab6053 *inst/extdata/performParallelNLMERun/data1.txt
ec4ae3366f349f55a72ae674a2a4f357 *inst/extdata/performParallelNLMERun/jobArgsCombined.txt
72e1aa16fb95ff60b9aa7de6ee72d1ec *inst/extdata/performParallelNLMERun/jobControlFile.txt
ed2735e500c4783066f69f2477b7d825 *inst/extdata/performParallelNLMERun/multipleIds/EtaCov.expected
f5205a7890699b6b45336836765cd247 *inst/extdata/performParallelNLMERun/multipleIds/EtaCovariate.expected
c4b0cfd605f835cadb6ee8c26c50353a *inst/extdata/performParallelNLMERun/multipleIds/EtaCovariateCat.expected
d7598aa43a5bbddb6842b1934d4962e1 *inst/extdata/performParallelNLMERun/multipleIds/EtaEta.expected
4f14efb5f398529b27082e96e169a97e *inst/extdata/performParallelNLMERun/multipleIds/StrCovariate.expected
477cdceba488065ace0af342256145a8 *inst/extdata/performParallelNLMERun/multipleIds/StrCovariateCat.expected
01a84756c1a7004681fba5bf713ce16c *inst/extdata/performParallelNLMERun/multipleIds/cols1.txt
396fd2a5c75e7302fd7b5e668c0b9ac8 *inst/extdata/performParallelNLMERun/multipleIds/data1.txt
d5353af076e5cdf5940dc7f31d5dcfa5 *inst/extdata/performParallelNLMERun/multipleIds/jobArgsCombined.txt
b13f58781a0b7ad4ed0778d9157d688e *inst/extdata/performParallelNLMERun/multipleIds/jobControlFile.txt
7094838e6d0ee2d9c75366feacc544c5 *inst/extdata/performParallelNLMERun/multipleIds/nonParEtaResult.expected
4d3d8f2211a94f1e199fff40a907c98e *inst/extdata/performParallelNLMERun/multipleIds/test.mdl
a30c071906d388f09aefd4e2c1e9fc28 *inst/extdata/performParallelNLMERun/test.mdl
6046b31a49bc0ffc3499f48912efdf87 *inst/extdata/performProfileEstimation/Profile.expected
7c79f5d15446c3c79a53f5685b4a4fad *inst/extdata/performProfileEstimation/Profile.unix
7c79f5d15446c3c79a53f5685b4a4fad *inst/extdata/performProfileEstimation/Profile.windows
da63914d8923a5bd1e32f4bbca978891 *inst/extdata/performProfileEstimation/cols1.txt
a1c55f9ddc1ef91519248d9ccf4a0155 *inst/extdata/performProfileEstimation/data1.txt
b977ebb17e4d15d0c2810c193ab5cd33 *inst/extdata/performProfileEstimation/jobArgsCombined.txt
25b76fe4fdf69e8c9b780c4d07710e97 *inst/extdata/performProfileEstimation/jobControlFile.txt
6f46e43864a3a4fadf526362a264e90f *inst/extdata/performProfileEstimation/test.mdl
c0c13df8b50c17d5688679f3185d494a *inst/extdata/performShotgunCovarSearch/Overall.expected
471f10e16919ce37dbfa0ef6c38ac9a5 *inst/extdata/performShotgunCovarSearch/cols1.txt
794ba85168d772a4a9fc8ccaa5ab6053 *inst/extdata/performShotgunCovarSearch/data1.txt
e0ada1fdb9ab2cd1638225ffe77d9985 *inst/extdata/performShotgunCovarSearch/jobArgsCombined.txt
8f00dc40d5b3c5d9fcadebc15413ed3e *inst/extdata/performShotgunCovarSearch/newNlmeControlFile.txt
5b0a8c5d9a07f78dc7e17d22f86e1c3b *inst/extdata/performShotgunCovarSearch/newNlmeargsCombined.txt
1a77933417ac4b025c5f16926dd689e4 *inst/extdata/performShotgunCovarSearch/test.mdl
e0cbc8564f209db50e75aa752eae962d *inst/extdata/performStepwiseCovarSearch/Overall.expected
471f10e16919ce37dbfa0ef6c38ac9a5 *inst/extdata/performStepwiseCovarSearch/cols1.txt
794ba85168d772a4a9fc8ccaa5ab6053 *inst/extdata/performStepwiseCovarSearch/data1.txt
77568dd3e780616da0443c2c17ec0274 *inst/extdata/performStepwiseCovarSearch/jobArgsCombined.txt
d7315cdfdd5e261efbe0d38ded5219f6 *inst/extdata/performStepwiseCovarSearch/jobControlFile.txt
1a77933417ac4b025c5f16926dd689e4 *inst/extdata/performStepwiseCovarSearch/test.mdl
a4cff23c4e4b9343d5251927d36de0a7 *inst/extdata/performStepwiseCovarSearch_enable421/Overall.expected
a91ca65c30a85209ef5c95c1e16ec2de *inst/extdata/performStepwiseCovarSearch_enable421/Stepwise.expected
b26d701819308380bdea4695c0cbba1d *inst/extdata/performStepwiseCovarSearch_enable421/cols1.txt
ef459ab3e6f452115b3edfacaee8e683 *inst/extdata/performStepwiseCovarSearch_enable421/data1.txt
df915845aeca0a5c291b7ba993aba4e9 *inst/extdata/performStepwiseCovarSearch_enable421/nlmeargs.txt
f3293f3132486b96fa525e67cd19c9dd *inst/extdata/performStepwiseCovarSearch_enable421/test.mdl
47771aac0560cad7832cff9d490696d0 *inst/extdata/performVPC/cols1.txt
794ba85168d772a4a9fc8ccaa5ab6053 *inst/extdata/performVPC/data1.txt
a1a08fb4780205e2009b05a811295014 *inst/extdata/performVPC/jobArgsCombined.txt
0fb614df39998538eb42353b82c8dd1f *inst/extdata/performVPC/jobControlFile.txt
b66a97d9da660828c585c7c461903038 *inst/extdata/performVPC/predout.expected
a30c071906d388f09aefd4e2c1e9fc28 *inst/extdata/performVPC/test.mdl
27ef31476dc8a91350372e11a17e3f7a *inst/extdata/simIntegrationErrors/cols1.txt
88efc7dd27428bd5ec1e796ffcb9c332 *inst/extdata/simIntegrationErrors/data1.txt
55203805d03e1609a6058812df5f0c25 *inst/extdata/simIntegrationErrors/jobArgsCombined.txt
240033e5941fb405e825c6767bd0c21c *inst/extdata/simIntegrationErrors/jobControlFile.txt
43b702abe9832a75dfdd7dfc7e24b968 *inst/extdata/simIntegrationErrors/test.mdl
f277f79390897a1fa386d2b2707fbd1e *man/UpdateMDLfrom_dmptxt.Rd
0004fa90486076537cce1986ae9caf31 *man/checkGCC.Rd
b18c09d11e729f86060e858a997255aa *man/checkInstallDir.Rd
147deb237928edec32550e1b914cc880 *man/checkLicenseFile.Rd
e52f1e18bd708312e98a8708ce6ef852 *man/checkMPISettings.Rd
c6c3040cb368b1101667166f53566c34 *man/checkRootDir.Rd
01857875097a057a9c3f87de8537b132 *man/dot-planMpiBatch.Rd
7a59127b4331fd8c53a83431beb8c462 *man/generateTDL5ModelInfo.Rd
ff4ee243dc43d6e0ba90b96d8a3557e2 *man/getTableNames.Rd
ef640bb749002cffd513571a427a91bc *man/performBootstrap.Rd
d680e979bf9d67a43a6c2d255d32001b *man/performEstimationOnSortColumns.Rd
b042cf79436339c34a0ca0553deb6192 *man/performParallelNLMERun.Rd
97f7528d6a8e601ef5d92d8675a0927c *man/performProfileEstimation.Rd
aee28af2cf7aa8e241ef309e5a262e30 *man/performShotgunCovarSearch.Rd
ef10df50398376fcc2f3bb8bf1d0cd4d *man/performStepwiseCovarSearch.Rd
ebd547a4158597d9349ee8ab24054050 *man/readProgressDotTxt.Rd
cb3b1c35dc5839ffea8fd094ed5eb2c2 *man/reconnectToBootstrapNLMERun.Rd
6b375dd2a2177c384ef0fd48f96dcd54 *man/renderTDL5Override.Rd
66e5c249abfb5eb6ebdb6aaaf83e89be *tests/testthat.R
676e0e4f321697d8975d767e71035497 *tests/testthat/fixtures/grid-templates/batchtools.sge.tmpl
9df7443680d120e98a76b578f864386e *tests/testthat/fixtures/grid-templates/batchtools.slurm.tmpl
a07dcebb43bd933f2230e6d72c5c61e2 *tests/testthat/fixtures/grid-templates/batchtools.torque.tmpl
90e3b4fc4a622004a4b07407b60de9b0 *tests/testthat/helper-bootstrap.R
317fad05babec5aa329a83c43e96c0a7 *tests/testthat/test_VPC.r
1da5e2c56be45c7035b6d5214325ffca *tests/testthat/test_bootstrap.r
84410b0c4d022109816bedb838100637 *tests/testthat/test_bootstrap_summary_outputs.r
eefae444867dd2bd7547ae5c43331eee *tests/testthat/test_collectJobResults.r
4c86f3852c9c2e881417bd8ef079bc25 *tests/testthat/test_gridSubmission.r
be00ab09b14bfdf8238b3d1e4f535d80 *tests/testthat/test_mpiBatchPlanning.r
224561cc0bc9a3272e061985d0e91647 *tests/testthat/test_profile.r
29c5a9b43f1d7778d502c20485e95bf2 *tests/testthat/test_scm_archive_dmp_prune.r
62839d35eefa231560bf6fc828b01fc4 *tests/testthat/test_scm_archive_mdl.r
1e8237191d9958074104f8efa2fd2ddb *tests/testthat/test_scm_update_initials.r
bcd93028b38e3d2605d8075f9006b20d *tests/testthat/test_shotgun.r
b4ff9df4de115eaf5693325ca265de26 *tests/testthat/test_shotgun_scm_archive.r
d9accf5a1dbc56e0a539eec99f364644 *tests/testthat/test_simIntegrationErrors.r
82207310de21ac452ae18bb54a9f86cd *tests/testthat/test_simpleFit.r
6a92f28c75d3842b4c59ad9576fe667a *tests/testthat/test_simpleFitMultIds.R
8dd841ab38fa1d4c15470b37bf165851 *tests/testthat/test_sortFit.r
352526da199399451832f460c7cd3dee *tests/testthat/test_startGenericGridJob_expiry.R
8340fc7d431a4908bbd7db2a2aac1531 *tests/testthat/test_stepwise.r
8c3f106d73234ba8b6b7a0909ea94b53 *tests/testthat/test_stepwiseCompileCache.r
90a5f5ed4bcc2566cf74c89914122def *tests/testthat/test_stepwise_enable421.r
b3174ea2015e6c8a529ad025f06c7925 *tests/testthat/test_stepwise_scm_archive.r
03dbd5857a004ed4e6f640b520a2ed25 *tests/testthat/test_tdl5_resolve.r
