# A Modular Platform for Reproducible Modeling of Species Niches and Distributions

## Documentation for package ‘wallace’ version 2.2.1

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

create_module | Create a Wallace module
ecoClimate_getdata | ecoClimate_getdata
ecoClimate_select | ecoClimate_select
envs_ecoClimate | envs_ecoClimate Obtain ecoClimate variables
envs_userEnvs | envs_userEnvs
envs_worldclim | envs_worldclim Obtain WorldClim variables
espace_nicheOv | espace_nicheOv Niche Overlap
espace_occDens | Occurrence density grid
espace_pca | espace_pca Principal component analysis
model_bioclim | model_bioclim Generate Bioclim model
model_maxent | model_maxent Generate maxent.jar or maxnet model
occs_queryDb | occs_queryDb Query online database for species occurrence records.
occs_userOccs | occs_userOccs Loads user provided occurrence records
part_partitionOccs | part_partitionOccs Partition occurrence data
penvs_bgExtent | penvs_bgExtent Generate background extent
penvs_bgMask | penvs_bgMask Mask environmental data
penvs_bgSample | penvs_bgSample Sample background points
penvs_drawBgExtent | penvs_drawBgExtent: Draw background extent
penvs_userBgExtent | penvs_userBgExtent: user provided background extent
poccs_removeByID | poccs_removeByID Remove occurrence by ID
poccs_selectOccs | poccs_selectOccs Remove occurrences outside of polygon
poccs_thinOccs | poocs_thinOccs Thin occurrences
register_module | Register a Wallace module
run_wallace | Run _Wallace_ Application
vis_bioclimPlot | vis_bioclimPlot Visualize bivariate plot of BIOCLIM model
xfer_area | xfer_area Transfer model to a new area
xfer_draw | xfer_draw Draw extent of transfer
xfer_mess | xfer_mess generate MESS map for transferred raster
xfer_time | xfer_time Transfer model to a new time
xfer_userEnvs | xfer_userEnvs Transfer model to user specified area and time
xfer_userExtent | xfer_userExtent: user provided extent of transfer