# Big Data Mapping

## Documentation for package ‘bigMap’ version 2.3.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

bdm.boxp | Clustering statistics box-plot.
bdm.cost | ptSNE cost & size plot.
bdm.dMap | Class density maps
bdm.dMap.plot | Class density maps plot.
bdm.example | Example dataset
bdm.fName | Default bdm file name
bdm.init | Create bdm instance
bdm.labels | Get data-point clustering labels.
bdm.local | Set/get default local machine name or IP address
bdm.merge.s2nr | Merging of clusters based on signal-to-noise-ratio.
bdm.mybdm | Set/get default path for mybdm
bdm.optk.plot | Plots the signal-to-nois-ratio as a function of the number of clusters.
bdm.optk.s2nr | Find optimal number of clusters based on signal-to-noise-ratio.
bdm.pakde | Perplexity-adaptive kernel density estimation
bdm.pakde.plot | Plot paKDE (density landscape)
bdm.ptsne | Parallelized t-SNE
bdm.ptsne.plot | Plot ptSNE (low-dimensional embedding)
bdm.qMap | ptSNE quantile-maps
bdm.save | Save bdm instance
bdm.scp | Transfer bdm instance to a remote machine.
bdm.wtt | Watertrack transform (WTT)
bdm.wtt.plot | Plot WTT (clustering)