# Analyzing and Interactive Visualization of Archival Tagging Data

## Documentation for package ‘RchivalTag’ version 0.1.9

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

abacus_plot | Abacus plot to illustrate the data coverage of different data products per tag throughout their deployment period.
bin_TempTS | bin depth-temperature time series data
classify_DayTime | Classifying the time period of the day
combine_histos | combine lists of TAD/TAT frequency data
dy_DepthTS | plot time series data via the dygraphs interactive time series plotting interface.
dy_TS | plot time series data via the dygraphs interactive time series plotting interface.
empty.plot_TS | plot time series data
empty.resample_TS | resample time series data at a lower resolution
get_DayTimeLimits | Estimating the timing of sunrise, sunset, astronomical and nautical twilight events
get_geopos | reads and plots geolocation estimates derived from archival tagging data
get_thermalstrat | estimate thermal stratification indices
ggboxplot_DepthTS_by_hour | Boxplot on hourly aggregated DepthTS records
ggplotly_geopos | Converts a ggplot2 object from ggplot_geopos() to plotly
ggplot_geopos | reads and plots geolocation estimates derived from archival tagging data
hist_tad | Time-at-Depth histogram
hist_tat | Time-at-Temperature histogram
image_TempDepthProfiles | plots interpolated daily temperature at depth profiles
interpolate_PDTs | interpolate daily temperature at depth profiles
interpolate_TempDepthProfiles | interpolate daily temperature at depth profiles
leaflet_geopos | reads and plots geolocation estimates derived from archival tagging data
merge_histos | merge and/or rebin TAD/TAT-frequency data
plot_data_coverage | Abacus plot to illustrate the data coverage of different data products per tag throughout their deployment period.
plot_DepthTempTS | plot Depth Temperature time series data
plot_DepthTempTS_resampled | plot Depth Temperature time series data
plot_DepthTempTS_resampled_PDT | plot Depth Temperature time series data
plot_DepthTS | plot time series data
plot_TS | plot time series data
RchivalTag | RchivalTag - Analyzing and Interactive Visualization of Archival Tagging Data
read_histos | reads a TAD/TAT-histogram file from archival tags
read_PDT | read PDT data from archival one or multiple tags
read_TS | reads Time Series Data from Archival Tags
rebin_histos | merge and/or rebin TAD/TAT-frequency data
resample_DepthTempTS | resample temperature at depth data from interpolated daily temperature at depth profiles or time series data
resample_PDT | resample temperature at depth data from interpolated daily temperature at depth profiles or time series data
resample_TS | resample time series data at a lower resolution
simulate_DepthTS | simulate depth time series data
ts2histos | convert depth and temperature time series data to discrete Time-at-Depth and Time-at-Temperature data (histogram data)
unmerge_histos | unmerge previously grouped or merged lists of TAD/TAT frequency data
update_leaflet_elementId | update elementID of the leaflet map to avoid rendering issues in RMarkdown