Primary Event Censored Distributions

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Documentation for package ‘primarycensored’ version 1.5.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

add_name_attribute	Helper method for custom distributions
check_dprimary	Check if a function is a valid bounded probability density function (PDF)
check_pdist	Check if a function is a valid cumulative distribution function (CDF)
check_truncation	Check if truncation time is appropriate relative to the maximum delay
ddiscretehazard	Hazard-parameterised piecewise-constant PMF
ddiscretestep	Step (piecewise-constant) PMF
dexpgrowth	Exponential growth distribution functions
discretehazard_start	Start values for the logit-hazard parameterisation
dpcens	Compute the primary event censored PMF for delays
dprimarycensored	Compute the primary event censored PMF for delays
expgrowth	Exponential growth distribution functions
fitdistdoublecens	Fit a distribution to doubly censored data
hazards_to_pmf	Convert discrete-time hazards to a PMF
new_pcens	S3 class for primary event censored distribution computation
pcd_as_stan_data	Prepare data for primarycensored Stan model
pcd_cmdstan_model	Create a CmdStanModel with primarycensored Stan functions
pcd_distributions	Supported delay distributions
pcd_dist_name	Get distribution function cdf or pdf name
pcd_load_stan_functions	Load Stan functions as a string
pcd_primary_distributions	Supported primary event distributions
pcd_stan_dist_id	Get distribution stan ID by name
pcd_stan_files	Get Stan files containing specified functions
pcd_stan_functions	Get Stan function names from Stan files
pcd_stan_function_deps	Get dependencies for a Stan function
pcd_stan_path	Get the path to the Stan code
pcens_cdf	Compute primary event censored CDF
pcens_cdf.default	Default method for computing primary event censored CDF
pcens_cdf.pcens_pdiscretehazard	Method for hazard CDF delay with general primary event distribution
pcens_cdf.pcens_pdiscretestep	Method for step CDF delay with general primary event distribution
pcens_cdf.pcens_pgamma_dunif	Method for Gamma delay with uniform primary
pcens_cdf.pcens_pgengamma.orig_dunif	Method for generalised gamma delay with uniform primary
pcens_cdf.pcens_pgengamma_dunif	Method for generalised gamma (Prentice parameterisation) delay with uniform primary
pcens_cdf.pcens_plnorm_dunif	Method for Log-Normal delay with uniform primary
pcens_cdf.pcens_pweibull_dunif	Method for Weibull delay with uniform primary
pcens_quantile	Compute primary event censored quantiles
pcens_quantile.default	Default method for computing primary event censored quantiles
pdiscretehazard	Hazard-parameterised piecewise-constant CDF
pdiscretestep	Step (piecewise-constant) CDF
pexpgrowth	Exponential growth distribution functions
pmf_to_hazards	Convert a PMF to discrete-time hazards
ppcens	Compute the primary event censored CDF for delays
pprimarycensored	Compute the primary event censored CDF for delays
qpcens	Compute quantiles corresponding to target probabilities for primary event censored delays
qprimarycensored	Compute quantiles corresponding to target probabilities for primary event censored delays
rdiscretehazard	Sample from a hazard-parameterised step distribution
rdiscretestep	Sample from a step distribution
rexpgrowth	Exponential growth distribution functions
rpcens	Generate random samples from a primary event censored distribution
rprimarycensored	Generate random samples from a primary event censored distribution