ConDivSim               Null models for functional-phylogenetic
                        diversity
cc.manip                Manipulating and examining comparative.comm
                        objects
comparative.comm        Creates a community comparative ecology object,
                        the basis of all functions in pez
dist.xxx                Make co-existence matrices based on phylogeny
                        (and/or) traits, and community or environemntal
                        overlap
drop_tip                Trim a phylogeny
eco.scape               eco.space scape simulation with a
                        macro-ecological focus
eco.xxx.regression      eco.xxx.regression
eco.xxx.regression.list
                        List of eco.xxx.regressions
fibre.plot              'fibre.plot' (fibrously) plots a phylogeny
fingerprint.regression
                        Regress trait evolution against trait ecology
                        (following Cavender-Bares et al. 2004)
generic.metrics         Calculate any metric(s) (and compare with null
                        distributions)
laja                    Macroinvertebrate samples from the Rio Laja of
                        Mexico
pez                     Phylogenetics for the Environmental Sciences
pez.dispersion          Calculate (phylogenetic) dispersion: examine
                        assemblages in the context of a source pools
pez.dissimilarity       Calculate (phylogenetic) dissimilarity: compare
                        assemblages to one-another
pez.endemism            Calculate (phylogenetic) endemism
pez.evenness            Calculate (phylogenetic) evenness: examine
                        assemblage composition and abundance
pez.metrics             Phylogenetic and functional trait metrics
                        within pez
pez.shape               Calculate (phylogenetic) shape: examine
                        assemblage composition
pglmm                   Phylogenetic Generalised Linear Mixed Model for
                        Community Data
phy.build               Build a novel phylogeny from existing data
phy.signal              Calculate phylogenetic 'signal'
plot.comparative.comm   Dot-plots of community presence/absence or
                        abundance
scape                   Simulate phylogenetic community structure
                        across a landscape
sim.meta                Simulate a meta-community (and its phylogeny)
sim.phy                 Simulate phylogenies
trait.asm               Produces simulated communities based on species
                        attributes
traitgram.cc            Traitgram for comparative community object
